<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:03:23"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545473" ref_strand="+" ref_description="SGN-E545473 [TUS-68-F11]">
      <seq>ccaccatatgaatgaccaccaccaccatcatcatcatgaccatgaccataaccatgaggacacaaaagcgacatcatgggtaggagcagatgggaaagtataccatagtcatgatgggttggctcctcactctcatgaacctatttattcacctggctactttagcagaagggcacctccacttaatgacaggaatttcagtgaaagagcctttactattggaattggtggccctgttggtactgggaaaacagctctaatgctggcattatgtaaaatcttgagggaaaaatacagtcttgcagcagtaacaaatgatatattcacgaaagaagatggagagttcttaataaaacatggtgcattgccggaggaaaggattcgagcagtggagacaggaggatgcccacatgctgctattagggaagatataagcattaaccttggacctcttgaggagctttctaatttgtacaaagcagatatactactctgtgaatctggtggagacaacctagctgccaacttcagtagggaacttgctgactacataatctacataatagatgtatctgcgggtgacaaaattcctcgaaaaggaggtcccggaattacacaagcagatctccttgtgataaataagaccgacttggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="2594" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2294" g_stop="2238" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2237" i_stop="2154" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2153" g_stop="1965" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="246" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1964" i_stop="1462" i_length="503">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1461" g_stop="1401" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="307" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1400" i_stop="858" i_length="543">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="857" g_stop="656" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="509" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="655" i_stop="508" i_length="148">
            <donor d_prob="0.460" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="507" g_stop="386" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="631" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="385" i_stop="282" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="281" g_stop="258" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="655" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E545473" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2294" e_stop="2238"/>
          <exon e_start="2153" e_stop="1965"/>
          <exon e_start="1461" e_stop="1401"/>
          <exon e_start="857" e_stop="656"/>
          <exon e_start="507" e_stop="386"/>
          <exon e_start="281" e_stop="258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCATATGAATGACCACCACCACCATCATCATCATGACCATGACCATAACCATGAGTACAAACTTGCTCTGTCATTTTTTTAAATTTTTTGTTTTTGGGTTGATTCTTGATTAATTAGTTGACTTACTTTATGAATCAGGGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGGGTATTTCTTCTTTTCCCTCAATTTTTCTTAAATTTATGTCTTGGGATGTGTGTTCAAGTGAAAGGGTTTTCAGTATTTGAGAAGAAAAATTCAATCTTTGAGAAATGAAAGTAGAAGGGGGAGGATGATATTTAGTAGCTTTTGGTATCTGTTGTAAGTAGGATTTTCTTTTAGCTGCAGCAACCCAAGTAAGAAACAAAAGGGACCATTTTTATTGATAAAAAAATTGAATCTTTAGAACTCTGCATATAGGAACACAATTGTTCCATTAGACACATATCTGACTGTGTGAATGTGTGTATGAGTGTGCTAGAGCATTTTCCTTTTCAGTTCAAGGTTCATAATGTACTGGAGTGACTTCACAGGGTATGTTATTGTTTTTGTAGTATTAGTGTTTGCTTTTGCTTTTCCTCCAATCGCAGTTTCTTTCTTGTTTATTAGCTTGTAAAATTTTGGTTGAACATGTTGAGATTTTGAGGGACTAACTGTTCTTTTATATGCAGGAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCAGTATGTACCACCAAATGATTTCTTTCTTTTGCCATTGTGACATACTTACTTCATGAATAAGTTTAGTCTGCACAATTTTTTGGAACTGGTGGATTCACTTTTGTGGTTTGGAAAATGGAACTCAAGTTTATTGGTGGTTTTCATATCTTTCTCTGCCTCATCATTTGAAATTCTAGATGAAGATGGGTGTTACATGCAATTTTCCGTTTGATTGAGTCATTTCAAGTGGAATAACAACATTCTTTATACACAATTGCCTTTGGAGATTATCTCAATAGGTCATGTTCTTGTTTTTTAATCATTAAGGACTCCTTCCTAAACATCACATATTGGCATCTGCCAAAACTTCAAACCGAGGTTTTGGGAGTTTACTTGACGTTTGTTAGTTTGACAGGAAATACGTTATGTGCAAGCATGTATTTGGTGTTCTGGAATTCCGACGCTCTTTCATCACTTTCCAAGTCTATGATCTTGAAATCTTCACGTTTTTGTTCTAAGATGTAGAATGAATTAATGTCCATGTTAAGATGCATTTCTTTGTAGGTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAGGTAATTGGTCACAGAAACTGTTTGCAGACACAAACTAATAAGGATATTAAAGTTTATATTTTCAGTAAGATAATGACTGTCTTACATCACTGTATGATCAGATATTAACCCGTTTCAATTTTGGTTTAAGAAAAGTTCCTTATTGCAGACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTTGTATGTTTCTTATTTTGCACATTTTGACTTCCAAAATATATCAAGTGTAAACTTATGTCTGCACATGATCAAATTATTATATGATTGTTCATTCTTAAATTTAGGTGATAAATAAGACCGACTTGGCA</genome_strand>
        <mrna_strand>CCACCATATGAATGACCACCACCACCATCATCATCATGACCATGACCATAACCATGA....................................................................................GGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAG....................................................................................................................................................ACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTT........................................................................................................GTGATAAATAAGACCGACTTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366645" ref_strand="+" ref_description="SGN-E366645 [cLPT-17-O5]">
      <seq>ttttatctcccctgtacccttgagataccctctttgactctgagaatctccactcaaatggcttcttcagaccaccatatgcatgaccaccaccatcatgaccatgaccatgaccatgaccatacccatcaggacacaaaagcaacatcatgggtaggagcagatgggaaagtataccatagtcatgatgggttggctcctcactctcatgaacctatttattcacctggctactttagcagaagggcacctccacttaatgacaggaatttcagtgaaagagcctttactattggaattggtggccctgttggtactgggaaaacagctttaatgctggcattatgtaaagtcttgagggaaaaatacagtcttgcagcagtaacaaatgatatattcacgaaagaagatggagagttcttaataaaacatggtgcattgccggaggaaaggattcgagcagtggagacaggaggatgcccacatgctgctattagggaagatataagcattaaccttggacctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="2663" stop="412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2363" g_stop="2238" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.865"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2237" i_stop="2154" i_length="84">
            <donor d_prob="0.996" d_score="0.74"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2153" g_stop="1965" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="320" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1964" i_stop="1462" i_length="503">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1461" g_stop="1401" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="381" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1400" i_stop="858" i_length="543">
            <donor d_prob="0.939" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="857" g_stop="712" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="527" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E366645" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2363" e_stop="2238"/>
          <exon e_start="2153" e_stop="1965"/>
          <exon e_start="1461" e_stop="1401"/>
          <exon e_start="857" e_stop="712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCTCCCCTGTACCCTTGAGATACCCTCTGTGA--CTGAGAATCTCCACTCAAATGGCTTCTTCAGACCACCATATGAATGACCACCACCACCAT---CATCATCATGACCATGACCATAACCATGAGTACAAACTTGCTCTGTCATTTTTTTAAATTTTTTGTTTTTGGGTTGATTCTTGATTAATTAGTTGACTTACTTTATGAATCAGGGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGGGTATTTCTTCTTTTCCCTCAATTTTTCTTAAATTTATGTCTTGGGATGTGTGTTCAAGTGAAAGGGTTTTCAGTATTTGAGAAGAAAAATTCAATCTTTGAGAAATGAAAGTAGAAGGGGGAGGATGATATTTAGTAGCTTTTGGTATCTGTTGTAAGTAGGATTTTCTTTTAGCTGCAGCAACCCAAGTAAGAAACAAAAGGGACCATTTTTATTGATAAAAAAATTGAATCTTTAGAACTCTGCATATAGGAACACAATTGTTCCATTAGACACATATCTGACTGTGTGAATGTGTGTATGAGTGTGCTAGAGCATTTTCCTTTTCAGTTCAAGGTTCATAATGTACTGGAGTGACTTCACAGGGTATGTTATTGTTTTTGTAGTATTAGTGTTTGCTTTTGCTTTTCCTCCAATCGCAGTTTCTTTCTTGTTTATTAGCTTGTAAAATTTTGGTTGAACATGTTGAGATTTTGAGGGACTAACTGTTCTTTTATATGCAGGAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCAGTATGTACCACCAAATGATTTCTTTCTTTTGCCATTGTGACATACTTACTTCATGAATAAGTTTAGTCTGCACAATTTTTTGGAACTGGTGGATTCACTTTTGTGGTTTGGAAAATGGAACTCAAGTTTATTGGTGGTTTTCATATCTTTCTCTGCCTCATCATTTGAAATTCTAGATGAAGATGGGTGTTACATGCAATTTTCCGTTTGATTGAGTCATTTCAAGTGGAATAACAACATTCTTTATACACAATTGCCTTTGGAGATTATCTCAATAGGTCATGTTCTTGTTTTTTAATCATTAAGGACTCCTTCCTAAACATCACATATTGGCATCTGCCAAAACTTCAAACCGAGGTTTTGGGAGTTTACTTGACGTTTGTTAGTTTGACAGGAAATACGTTATGTGCAAGCATGTATTTGGTGTTCTGGAATTCCGACGCTCTTTCATCACTTTCCAAGTCTATGATCTTGAAATCTTCACGTTTTTGTTCTAAGATGTAGAATGAATTAATGTCCATGTTAAGATGCATTTCTTTGTAGGTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCT</genome_strand>
        <mrna_strand>TTTTATCTCCCCTGTACCCTTGAGATACCCTCTTTGACTCTGAGAATCTCCACTCAAATGGCTTCTTCAGACCACCATATGCATGACCACCACCATCATGACCATGACCATGACCATGACCATACCCATCA....................................................................................GGACACAAAAGCAACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAGCTTTAATGCTGGCATTATGTAAAGTCTTGAGGGAAAAATACAGTCTTGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341087" ref_strand="+" ref_description="SGN-E341087 [cTOE-22-E18]">
      <seq>ccaccatatgaatgaccaccaccaccatcatcatcatgaccatgaccataaccatgaggacacaaaagcgacatcatgggtaggagcagatgggaaagtataccatagtcatgatgggttggctcctcactctcatgaacctatttattcacctggctactttagcagaagggcacctccacttaatgacaggaatttcagtgaaagagcctttactattggaattggtggccctgttggtactgggaaaacagctctaatgctggcattatgtaaaatcttgagggaaaaatacagtcttgcagcagtaacaaatgatatattcacgaaagaagatggagagttcttaataaaacatggtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="2594" stop="501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2294" g_stop="2238" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2237" i_stop="2154" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2153" g_stop="1965" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="246" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1964" i_stop="1462" i_length="503">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1461" g_stop="1401" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="307" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1400" i_stop="858" i_length="543">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="857" g_stop="801" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="364" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E341087" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2294" e_stop="2238"/>
          <exon e_start="2153" e_stop="1965"/>
          <exon e_start="1461" e_stop="1401"/>
          <exon e_start="857" e_stop="801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCATATGAATGACCACCACCACCATCATCATCATGACCATGACCATAACCATGAGTACAAACTTGCTCTGTCATTTTTTTAAATTTTTTGTTTTTGGGTTGATTCTTGATTAATTAGTTGACTTACTTTATGAATCAGGGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGGGTATTTCTTCTTTTCCCTCAATTTTTCTTAAATTTATGTCTTGGGATGTGTGTTCAAGTGAAAGGGTTTTCAGTATTTGAGAAGAAAAATTCAATCTTTGAGAAATGAAAGTAGAAGGGGGAGGATGATATTTAGTAGCTTTTGGTATCTGTTGTAAGTAGGATTTTCTTTTAGCTGCAGCAACCCAAGTAAGAAACAAAAGGGACCATTTTTATTGATAAAAAAATTGAATCTTTAGAACTCTGCATATAGGAACACAATTGTTCCATTAGACACATATCTGACTGTGTGAATGTGTGTATGAGTGTGCTAGAGCATTTTCCTTTTCAGTTCAAGGTTCATAATGTACTGGAGTGACTTCACAGGGTATGTTATTGTTTTTGTAGTATTAGTGTTTGCTTTTGCTTTTCCTCCAATCGCAGTTTCTTTCTTGTTTATTAGCTTGTAAAATTTTGGTTGAACATGTTGAGATTTTGAGGGACTAACTGTTCTTTTATATGCAGGAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCAGTATGTACCACCAAATGATTTCTTTCTTTTGCCATTGTGACATACTTACTTCATGAATAAGTTTAGTCTGCACAATTTTTTGGAACTGGTGGATTCACTTTTGTGGTTTGGAAAATGGAACTCAAGTTTATTGGTGGTTTTCATATCTTTCTCTGCCTCATCATTTGAAATTCTAGATGAAGATGGGTGTTACATGCAATTTTCCGTTTGATTGAGTCATTTCAAGTGGAATAACAACATTCTTTATACACAATTGCCTTTGGAGATTATCTCAATAGGTCATGTTCTTGTTTTTTAATCATTAAGGACTCCTTCCTAAACATCACATATTGGCATCTGCCAAAACTTCAAACCGAGGTTTTGGGAGTTTACTTGACGTTTGTTAGTTTGACAGGAAATACGTTATGTGCAAGCATGTATTTGGTGTTCTGGAATTCCGACGCTCTTTCATCACTTTCCAAGTCTATGATCTTGAAATCTTCACGTTTTTGTTCTAAGATGTAGAATGAATTAATGTCCATGTTAAGATGCATTTCTTTGTAGGTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCA</genome_strand>
        <mrna_strand>CCACCATATGAATGACCACCACCACCATCATCATCATGACCATGACCATAACCATGA....................................................................................GGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310713" ref_strand="+" ref_description="SGN-E310713 [cLEZ-15-O13]">
      <seq>caccatatgaatgaccaccaccaccatcatcatcatgaccatgaccataaccatgaggacacaaaagcgacatcatgggtaggagcagatgggaaagtataccatagtcatgatgggttggctcctcactctcatgaacctatttattcacctggctactttagcagaagggcacctccacttaatgacaggaatttcagtgaaagagcctttactattggaattggtggccctgttggtactgggaaaacagctctaatgctggcattatgtaaaatcttgagggaaaaatacagtcttgcagcagtaacaaatgatatattcacgaaagaagatggagagttcttaataaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="2593" stop="506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2293" g_stop="2238" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2237" i_stop="2154" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2153" g_stop="1965" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="245" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1964" i_stop="1462" i_length="503">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1461" g_stop="1401" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="306" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1400" i_stop="858" i_length="543">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="857" g_stop="806" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="358" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E310713" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2293" e_stop="2238"/>
          <exon e_start="2153" e_stop="1965"/>
          <exon e_start="1461" e_stop="1401"/>
          <exon e_start="857" e_stop="806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATATGAATGACCACCACCACCATCATCATCATGACCATGACCATAACCATGAGTACAAACTTGCTCTGTCATTTTTTTAAATTTTTTGTTTTTGGGTTGATTCTTGATTAATTAGTTGACTTACTTTATGAATCAGGGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGGGTATTTCTTCTTTTCCCTCAATTTTTCTTAAATTTATGTCTTGGGATGTGTGTTCAAGTGAAAGGGTTTTCAGTATTTGAGAAGAAAAATTCAATCTTTGAGAAATGAAAGTAGAAGGGGGAGGATGATATTTAGTAGCTTTTGGTATCTGTTGTAAGTAGGATTTTCTTTTAGCTGCAGCAACCCAAGTAAGAAACAAAAGGGACCATTTTTATTGATAAAAAAATTGAATCTTTAGAACTCTGCATATAGGAACACAATTGTTCCATTAGACACATATCTGACTGTGTGAATGTGTGTATGAGTGTGCTAGAGCATTTTCCTTTTCAGTTCAAGGTTCATAATGTACTGGAGTGACTTCACAGGGTATGTTATTGTTTTTGTAGTATTAGTGTTTGCTTTTGCTTTTCCTCCAATCGCAGTTTCTTTCTTGTTTATTAGCTTGTAAAATTTTGGTTGAACATGTTGAGATTTTGAGGGACTAACTGTTCTTTTATATGCAGGAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCAGTATGTACCACCAAATGATTTCTTTCTTTTGCCATTGTGACATACTTACTTCATGAATAAGTTTAGTCTGCACAATTTTTTGGAACTGGTGGATTCACTTTTGTGGTTTGGAAAATGGAACTCAAGTTTATTGGTGGTTTTCATATCTTTCTCTGCCTCATCATTTGAAATTCTAGATGAAGATGGGTGTTACATGCAATTTTCCGTTTGATTGAGTCATTTCAAGTGGAATAACAACATTCTTTATACACAATTGCCTTTGGAGATTATCTCAATAGGTCATGTTCTTGTTTTTTAATCATTAAGGACTCCTTCCTAAACATCACATATTGGCATCTGCCAAAACTTCAAACCGAGGTTTTGGGAGTTTACTTGACGTTTGTTAGTTTGACAGGAAATACGTTATGTGCAAGCATGTATTTGGTGTTCTGGAATTCCGACGCTCTTTCATCACTTTCCAAGTCTATGATCTTGAAATCTTCACGTTTTTGTTCTAAGATGTAGAATGAATTAATGTCCATGTTAAGATGCATTTCTTTGTAGGTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATG</genome_strand>
        <mrna_strand>CACCATATGAATGACCACCACCACCATCATCATCATGACCATGACCATAACCATGA....................................................................................GGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266426" ref_strand="+" ref_description="SGN-E266426 [cLEI-3-L19]">
      <seq>agatgggaaagtataccatagtcatgatgggttggctcctcactctcatgaacctatttattcacctggctactttagcagaagggcacctccacttaatgacaggaatttcagtgaaagagcctttactattggaattggtggccctgttggtactgggaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="2423" stop="1662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2123" g_stop="1965" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E266426" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>159</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2123" e_stop="1965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGG</genome_strand>
        <mrna_strand>AGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354850" ref_strand="+" ref_description="SGN-E354850 [cTOS-19-N19]">
      <seq>aacatgttcctaaggtgaatcctcataggatatttgatattgaaattcatggaatattattatgggcttcaatgggattcttgatgccagctggaatactcacaataagactctccaatacagaagagtgtagcacaacaaaactcaaaattctcttctatgttcatggaactcttcaggtactctctgtggtgttggctactgctggagctgtgctatcaataaagagctttgaaaatttgttcaacaatactcaccaaagaataggcttagcactttatattgccgtctatgtccaattttttatgggatttcgaaggcctatgaggggaagtaaaggaagaagtgtgtggtactttttccattggctacttggaacaacaatatgtttggcaggaattatcaacacttacacaggcttaaatgcttacaatcaaagaacatcaaagccaataagcctttggacaataatttttacagctcaaatatcattcatgggattattctatcttttccaagacaaatgggaatatatacaaaagcaaggggtcattcttaacaacaatgaaactacaacacctcaagtggaaatagttgttcctcaaaatgatgaacaaaagatgataatgagaactgagtcaggaaggaaaagcaatgcacttggtactttcttttctagacataatgtcctaaacaaattatttcaacaaacttgaaatgttttcatgtttcttgtaaattactagtttctcgatacgcatgtgtattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="7994" stop="5061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7994" g_stop="7990" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="14" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7989" i_stop="7682" i_length="308">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7681" g_stop="7517" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="179" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7516" i_stop="6951" i_length="566">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6950" g_stop="6802" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="328" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6801" i_stop="5804" i_length="998">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5803" g_stop="5361" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="771" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E354850" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7994" e_stop="7990"/>
          <exon e_start="7681" e_stop="7517"/>
          <exon e_start="6950" e_stop="6802"/>
          <exon e_start="5803" e_stop="5361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGGTATGACCCCCCCCACCCCACCCCACCCCCCTACAAAATTGTTGTGTTTATGGAAGCACATTCAGAATTTAAATTTGATCTGTCGGGTTCATCCGAACCTAGGTTAAAATAATTTTTTATGTATATATAGCAGATGTCGAACTCCCTTCGATTTCTTCGTGTGTCTATTTTTCAGATTTTGAACCTCTTGTCAAAAATTCTGGCTCTGCTCCATAACATAGGAAGACATTTGCTTTCCCTTATTTAATTCGGTTTTTTTTTCCAAACAAGGGATGAGAATTTGACAACTAATGTTAAGTATTGTATAGGTGAATTCTCATAGGATATTTGATATTGAAATTCATGGAATATTATTATGGGCTTCAATGGGATTCTTGATGCCAGCTGGAATACTCACAATAAGATTCTCCAATACAGAAGAGTGTAGCACAACAAAACTCAAAATTCTCTTCTATGTTCATGGAACTCTTCAGGTAACTAACACTGTGTTTTTCTGGTTTCGATTTGATACGGAGTTTAAAAAAATAAAAAAAAATGTAACAAAATCTCCTTTGATACTGTGGTCTAATCTTTAAACACATGACACGTGTCACAAAAGAAAAGAGACATTCTTTTTTAAATAAACTAAAAAAGAAAAATAAAAGAAACAAACTGAAAAAGAAACAGAATGAAGATTTAGTTTCAAATTTTGAAAATGAATTTAAATTTTTAGTAAAGGGAAAAAAAAACTTTTTTGATATCTCCTTGATGAATGATAAATGTTTCTTTTGAGCCATGACAAGTAATGATCATAAATTGATCTTTACTTTAGGTGCACTTTTAATCATAGTAATGTTAAAAAAAGTTCAAAATTCATTTATGTGAGCCCACAGTTTGGTGGGAGTATAAGTAAAAACAGATTTGACTATGATTGTGTCCATTAATATGAGGATTTATTTAACTAATACTAGAAATTAAAAAAAAAAATTATGTTATTTCTTTTGTTTCTGGCTGTAATAATTGATCCTATTTTATTTTCTTTCTATTTTTATTTGTAAAGGTACTCTCTGTGGTGTTGGCTACTGCTGGAGCTGTGCTATCAATAAAGAGCTTTGAAAATTTGTTCAACAATACTCACCAAAGAATAGGCTTAGCACTTTATATTGCCGTCTATGTCCAATTTTTTATGGGATTTCGAAGGCCTATGAGGTAACTTGTCCTTTATTTTTTAAGCAATTACTTCATTCGTCCACTTTTATTTGTTATGAAAGTTAATTTGATTAATTTTCAAAGTTAAATTAGATTATATTAATTTGATATTTTAAACAAAAAATTTAGTTATTCAAAAATTATATGAAAAGTAGTACACCATATAAATTATTTGTATATCAATATGATGAAAAAATCAACCTTAAAATGTTAGACAAAGTTTTTATAGTTTGACTCTAAAAATAGAAACTATGACAATTAATAGTGGATGAAGAGAGTAATAATAGATATAGTGAAACTTTGCCTAGGTTGAATTGTAAAAAGAAAAAATCTTTTTGGCTAGAAAATTTGGCCAGAATTTAACCAGAATGGTATTTTACCTATGTTATTTTATCTTTTTGAATATTTTTACCATTTTAACTTTAATTACTTTAAATTAAAAAAATATTTAAAAAATTAATTTATTTTAAAATAAAAAGATATTATACGCTTTTAAAATTTTCTAACCAAATTTTGAGGTCACCCTTATAAAATATATGTAGGAAAAGCAGCACCTTGGCTTTCTAAAAGAAAATTGAATCCCGCGTACACGGGTCTTGAGATTTGTATTTTTGATACAGTCGTCTAAAATTAAGTATTAAGTAGCTTTACTCATACCCACTTGTTATTTTTGATTAATTCAAGTATTAAGTAGCTTTATTTTATTAGAATTTGAGCACTGATCTTTTTAACGATTTTCACCAATTTCATTCACACTATACTACACCTTTGAGCCTTTTGTACACGCACTTATAACTACAAGCATGATGTCAATATGAGTAATGCACATCTAGAGGCTTCTCTAGAATTATGTGTACATATATCAAAAACATGCATATAACTAAATCAAACTCGTTCTGAATCAACTTACTCTAAATTTTGGATTCATCTCGACTTAAACATATCTCTATGAAATTTAATTAAAGACTAACTTATTATTTAACTCTTTTGGACTATAGGGGAAGTAAAGGAAGAAGTGTGTGGTACTTTTTCCATTGGCTACTTGGAACAACAATATGTTTGGCAGGAATTATCAACACTTACACAGGCTTAAATGCTTACAATCAAAGAACATCAAAGCCAATAAGCCTTTGGACAATAATTTTTACAGCTCAAATATCATTCATGGGATTATTCTATCTTTTCCAAGACAAATGGGAATATATACAAAAGCAAGGGGTCATTCTTAACAACAATGAAACTACAACACCTCAAGTGGAAATAGTTGTTCCTCAAAATGATGAACAAAAGATGATAATGAGAACTGAGTCAGGAAGGAAAAGCAATGCACTTGGTACTTTCTTTTCTAGACATAATGTCCTAAACAAATTATTTCAACAAACTTGAAATGTTTTCATGTTTCTTGTAAATTACTAGTTTCTCGATACGCATGTGTATTTTG</genome_strand>
        <mrna_strand>CTAAG....................................................................................................................................................................................................................................................................................................................GTGAATCCTCATAGGATATTTGATATTGAAATTCATGGAATATTATTATGGGCTTCAATGGGATTCTTGATGCCAGCTGGAATACTCACAATAAGACTCTCCAATACAGAAGAGTGTAGCACAACAAAACTCAAAATTCTCTTCTATGTTCATGGAACTCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCTCTGTGGTGTTGGCTACTGCTGGAGCTGTGCTATCAATAAAGAGCTTTGAAAATTTGTTCAACAATACTCACCAAAGAATAGGCTTAGCACTTTATATTGCCGTCTATGTCCAATTTTTTATGGGATTTCGAAGGCCTATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGTAAAGGAAGAAGTGTGTGGTACTTTTTCCATTGGCTACTTGGAACAACAATATGTTTGGCAGGAATTATCAACACTTACACAGGCTTAAATGCTTACAATCAAAGAACATCAAAGCCAATAAGCCTTTGGACAATAATTTTTACAGCTCAAATATCATTCATGGGATTATTCTATCTTTTCCAAGACAAATGGGAATATATACAAAAGCAAGGGGTCATTCTTAACAACAATGAAACTACAACACCTCAAGTGGAAATAGTTGTTCCTCAAAATGATGAACAAAAGATGATAATGAGAACTGAGTCAGGAAGGAAAAGCAATGCACTTGGTACTTTCTTTTCTAGACATAATGTCCTAAACAAATTATTTCAACAAACTTGAAATGTTTTCATGTTTCTTGTAAATTACTAGTTTCTCGATACGCATGTGTATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450176" ref_strand="+" ref_description="SGN-E450176 [cSTS-8-J11]">
      <seq>caacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaactggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattcctgctaagctgtgcaagagggagagcactaagcagttccatgactccaagatcaagttcccgttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcattagttgagttgagttaagattcattgtgaaagagatataagttaaacctttttgttctactgaccaaatgatggtggttattagagtatttttaatgatggatttctatttgcttttatcgttgaagttcttgctaataaattttgttagcattggtggtaaatgtggggttgatttcgtttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="12633" stop="9980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12333" g_stop="12306" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10865" g_stop="10279" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="615" r_length="587" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E450176" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12333" e_stop="12306"/>
          <exon e_start="10865" e_stop="10279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGAATTCCTATTTGCTTTTATCGTTGAAGTTCTTGCCAATATATTTTGTTAGCA-TGGTAGTAAATGCGTGGCTGATTTTGTTTCATTC</genome_strand>
        <mrna_strand>CAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACTGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCTGCTAAGCTGTGCAAGAGGGAGAGCACTAAGCAGTTCCATGACTCCAAGATCAAGTTCCCGTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCATTAGTTGAGTTGAGTT-AAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCTACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATGATGGATTTCTATTTGCTTTTATCGTTGAAGTTCTTGCTAATAAATTTTGTTAGCATTGGTGGTAAATGTGGGGTTGATTTCGTTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452294" ref_strand="+" ref_description="SGN-E452294 [cSTS-16-G4]">
      <seq>ggaaagagagccttgccgaaatggtgacgtacaagttccatcagtaccaggttgtcgggagagctttgcccactgaaacagatgagcatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaactggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaagctgtgcaagagggagacactannaacagttccatgactccaagatcaagttcccgnttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcattagttgagttgagttaagattcattgtgaaagagatataagttaaacctttttgttctactgaccaatgatggtggttatttagagtatttttaatcatggatttctatttgctttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15765" stop="10047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12706" g_stop="12672" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="151" r_length="116" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="215" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10340" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="742" r_length="527" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E452294" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12706" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCAC-A-AAGCAGTTCCATGACTCCAAGATCAAGTTCCC-CTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTA-TTAGAGTATTTTTAATCATGAATTCCTATTTGCTTTTATCGTTGA</genome_strand>
        <mrna_strand>GGAAAGAGAGCCTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACTGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAGCTGTGCAAGAGGGAGA-CACTANNAACAGTTCCATGACTCCAAGATCAAGTTCCCGNTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCATTAGTTGAGTTGAGTT-AAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCTACTGACC-AATGATGGTGGTTATTTAGAGTATTTTTAATCATGGATTTCTATTTGCTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E461293" ref_strand="+" ref_description="SGN-E461293 [cPRO-7-N14]">
      <seq>aaacgtagtgcagagggaaagagagctttgccgaaatggtgacgtacaagttccatcagtaccaggttgtcgggagagccttgcccactgaaacagatgagcatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaactggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattcctgctaagctgtgcaagagggagagcactaagcagttccatgactccaagatcaagttcccgttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttggtcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcattagttgagttgagttaagattcattgtngaagagatataagttaaacctttttgttctactgaccaaatgatgggggttattagagtatttttaatgatggatttctatttgctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15780" stop="10047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12721" g_stop="12672" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="166" r_length="116" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="230" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10347" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="748" r_length="518" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E461293" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12721" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGAATTCCTATTTGCTTTTA</genome_strand>
        <mrna_strand>AAACGTAGTGCAGAGGGAAAGAGAGCTTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCCTTGCCCACTGAAACAGATGAGCATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACTGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCTGCTAAGCTGTGCAAGAGGGAGAGCACTAAGCAGTTCCATGACTCCAAGATCAAGTTCCCGTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGGTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCATTAGTTGAGTTGAGTT-AAGATTCATTGTNGAAGAGATATAAGTTAAACCTTTTTGTTCTACTGACCAAATGATGGGGGTTATTAGAGTATTTTTAATGATGGATTTCTATTTGCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346179" ref_strand="+" ref_description="SGN-E346179 [cTOF-23-A3]">
      <seq>cgcagtgcagaggaaaagagtgccttgccgaaatggtgacgtacaagttccatcagtatcaggttgtcgggagagctttgcccaccgaaacagatgaacatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgcgaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaattaagaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacattgagatggcttctcgccacagagttcgccatcactgcatccagatcataaagaccgcaaccattccggctaagctgtgcaagagggagagcacnanagcagttccatgactccaagatcaagttccccttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcagtagttgagttgagttaaagattcattgtgaaagagatataagttaaacctttttgttcgactgaccaatgatggtggttattagagtatttttaatcatgaattcctatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="13018" stop="10052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12718" g_stop="12672" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="163" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="227" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10352" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="741" r_length="514" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E346179" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12718" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCAC-AAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGAATTCCTATTTGC</genome_strand>
        <mrna_strand>CGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACATTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACNANAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACC-AATGATGGTGGTTATTAGAGTATTTTTAATCATGAATTCCTATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356357" ref_strand="+" ref_description="SGN-E356357 [cTOS-20-B7]">
      <seq>tttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaattaagaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacattgagatggcttctcgccacagagttcgccatcactgcatccagatcataaagaccgcaaccattccggctaagctgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccccttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcagtagttgagttgagttaaagattcattgtgaaagagatataagttaaacctttttgttcgactgaccaaatgatggtggttattagagtatttttaatcatgaattcctatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="12666" stop="10052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12366" g_stop="12306" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10865" g_stop="10352" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="575" r_length="514" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E356357" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12366" e_stop="12306"/>
          <exon e_start="10865" e_stop="10352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGAATTCCTATTTGC</genome_strand>
        <mrna_strand>TTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACATTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGAATTCCTATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465613" ref_strand="+" ref_description="SGN-E465613 [cPRO-21-N17]">
      <seq>aaacgtagtgcagagggaaagagagctttgccgaaatggtgacgtacaagttccatcagtaccaggttgtcgggagagccttgcccactgaaacagatgagcatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaactggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattcctgctaagctgtgcaagagggagagcactaagcagttccatgactccaagatcaagttcccgttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcattagttgagttgagttaagattcattgtgaaagagatataagttaaacctttttgttctactgaccaaatgatggtggttattagagtatttttaatgatggatttctatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15780" stop="10053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12721" g_stop="12672" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="166" r_length="116" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="230" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10353" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="742" r_length="512" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E465613" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12721" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGAATTCCTATTTG</genome_strand>
        <mrna_strand>AAACGTAGTGCAGAGGGAAAGAGAGCTTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCCTTGCCCACTGAAACAGATGAGCATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACTGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCTGCTAAGCTGTGCAAGAGGGAGAGCACTAAGCAGTTCCATGACTCCAAGATCAAGTTCCCGTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCATTAGTTGAGTTGAGTT-AAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCTACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATGATGGATTTCTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E558279" ref_strand="-" ref_description="SGN-E558279 [17594]">
      <seq>taaagagagcttgccgaaatggtgacgtacaagttccatcagtaccaggttgtcgggagagcttttgcccactgaaacagatgagcatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaactggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaagctgtgcaagagggagagcactaagcagttccatgactccaagatcaagttcccgttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcattagttgagttgagttaagattcattgtgaaagagatataagttaaacctttttgttcgactgaccaaatgatggtggttattagagtatttttaatcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15763" stop="10063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12705" g_stop="12672" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="150" r_length="117" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="214" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10355" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="724" r_length="510" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E558279" ref_strand="-">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558279" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12705" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGC-TTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGAATTCCTATT</genome_strand>
        <mrna_strand>TAAAGAGAGC-TTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCTTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACTGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAGCTGTGCAAGAGGGAGAGCACTAAGCAGTTCCATGACTCCAAGATCAAGTTCCCGTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCATTAGTTGAGTTGAGTT-AAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286010" ref_strand="+" ref_description="SGN-E286010 [cLES-13-J8]">
      <seq>gagagctttgcctaccgaaacagatgaacatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgcgaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaattaagaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacattgagatggcttctcgccacagagttcgccatcactgcatccagatcataaagaccgcaaccattccggctaagctgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccccttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcagtagttgagttgagttaaagattcattgtgaaagagatataagttaaacctttttgttcgactgaccaaatgatggtggttattagagtatttttaatcatgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="12854" stop="10063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12554" g_stop="12462" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="157" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10865" g_stop="10358" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="665" r_length="508" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E286010" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12554" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGAATTCCT</genome_strand>
        <mrna_strand>GAGAGCTTTGCCTACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACATTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349056" ref_strand="+" ref_description="SGN-E349056 [cTOS-2-A14]">
      <seq>ggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaattaagaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacattgagatggcttctcgccacagagttcgccatcactgcatccagatcataaagaccgcaaccattccggctaagctgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccccttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcagtagttgagttgagttaaagattcattgtgaaagagatataagttaaacctttttgttcgactgaccaaatgatggtggttattagagtatttttaatcatgaattcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="12658" stop="10057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12358" g_stop="12306" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10865" g_stop="10358" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="561" r_length="508" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="562" polyA_stop="572"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E349056" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12358" e_stop="12306"/>
          <exon e_start="10865" e_stop="10358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGAATTCCT</genome_strand>
        <mrna_strand>GGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACATTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGAATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352609" ref_strand="+" ref_description="SGN-E352609 [cTOS-9-N2]">
      <seq>ggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaattaagaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacattgagatggcttctcgccacagagttcgccatcactgcatccagatcataaagaccgcaaccattccggctaagctgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccccttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcagtagttgagttgagttaaagattcattgtgaaagagatataagttaaacctttttgttcgactgaccaaatgatggtggttattagagtatttttaatcatgaattcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="12658" stop="10057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12358" g_stop="12306" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10865" g_stop="10358" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="561" r_length="508" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="562" polyA_stop="571"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E352609" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12358" e_stop="12306"/>
          <exon e_start="10865" e_stop="10358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGAATTCCT</genome_strand>
        <mrna_strand>GGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACATTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGAATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356132" ref_strand="+" ref_description="SGN-E356132 [cTOS-20-E23]">
      <seq>ggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaattaagaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacattgagatggcttctcgccacagagttcgccatcactgcatccagatcataaagaccgcaaccattccggctaagctgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccccttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcagtagttgagttgagttaaagattcattgtgaaagagatataagttaaacctttttgttcgactgaccaaatgatggtggttattagagtatttttaatcatgaattcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="12658" stop="10057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12358" g_stop="12306" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10865" g_stop="10358" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="561" r_length="508" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="562" polyA_stop="572"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E356132" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12358" e_stop="12306"/>
          <exon e_start="10865" e_stop="10358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGAATTCCT</genome_strand>
        <mrna_strand>GGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACATTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGAATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E585208" ref_strand="+" ref_description="SGN-E585208 [66927]">
      <seq>ggagagctttgcccactgaaacagatgagcatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaatcaagaattatggtatttggctccgnttaccaaagtagaactggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaagctgtgcaagagggagagcactaagcagttccatgactccaagatcaagttcccgttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcattagttgagttgagttaagattcattgtgaaagagatataagttaaacctttttgttctactgaccaaatgatgggtggttattagagtattttaatcatggattcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15623" stop="10057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12555" g_stop="12462" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="158" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10865" g_stop="10361" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="663" r_length="505" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E585208" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12555" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCG-TTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGAT-GGTGGTTATTAGAGTATTTTTAATCATGAATT</genome_strand>
        <mrna_strand>GGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGNTTACCAAAGTAGAACTGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAGCTGTGCAAGAGGGAGAGCACTAAGCAGTTCCATGACTCCAAGATCAAGTTCCCGTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCATTAGTTGAGTTGAGTT-AAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCTACTGACCAAATGATGGGTGGTTATTAGAGTA-TTTTAATCATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711437" ref_strand="+" ref_description="SGN-E711437 [FB02AA08]">
      <seq>cggtgagctttgcccaccgaaacagatgaacatcccaagattcatcgtatgaagttgtgggctacaaatgaagttcgtgcgaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaattaagaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcatccagatcataaagaccgcaaccattccggctaagctgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccccttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcagtagttgagttgagttaaagattcattgtgaaagagatataagttaaacctttttgttcgactgaccaaatgatggtggttattagagtatttttaatcntgannaannaaaaaaaaaaaaaaaaaaaaaatttttggggggggggccgggaccccatttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="12855" stop="10064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12556" g_stop="12462" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="159" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10865" g_stop="10364" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="661" r_length="502" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="672" polyA_stop="690"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E711437" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12556" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGA</genome_strand>
        <mrna_strand>CGGTGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTCATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCNTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286247" ref_strand="-" ref_description="SGN-E286247 [cLES-11-J15]">
      <seq>ctattaatgagatcttcgagaagaacccaacatcaattaagaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacattgagatggcttctcgccacagagttcgccatcactgcatccagatcataaagaccgcaaccattccggttaagctgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccccttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgataagcaacttcagatttatgcaattttggtgcagtagttgagttgagttaaagattcattgtgaaagagatataagttaaacctttttgttcgactgaccaaatgatggtggttattagagtatttttaatcatgaaaaaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="11176" stop="10063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10865" g_stop="10364" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="513" r_length="502" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="514" polyA_stop="530"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E286247" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286247" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10865" e_stop="10364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGA</genome_strand>
        <mrna_strand>ATCTTCGAGAAGAACCCAACATCAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACATTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGTTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGATAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283346" ref_strand="-" ref_description="SGN-E283346 [cLER-12-E17]">
      <seq>ttaagaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacattgagatggcttctcgccacagagttcgccatcactgcatccagatcataaagaccgcaaccattccggntaagctgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccccttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcagtagttgagttgagttaaagattcattgtgaaagagatataagttaaacctttttgttcgactgaccaaatgatggtggttattagagtatttttaatcatgaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="11140" stop="10063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10840" g_stop="10364" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="478" polyA_stop="496"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E283346" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283346" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10840" e_stop="10364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGA</genome_strand>
        <mrna_strand>TTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACATTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGNTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227626" ref_strand="+" ref_description="SGN-E227626 [cLEL-30-I19](-)">
      <seq>agaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacattgagatggcttctcgccacagagttcgccatcactgcatccagatcataaagaccgcaaccattccggctaagctgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccccttggtgttcaagaaagtcaggccaccatctaggaaactcaaggccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagattttatgcaattttggtgcagtagttgagttgagttaaagattcattgtgaaagagatataagttaaacctttttgttcgactgaccaaatgatggtggttattagagtatttttaatcatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="11137" stop="10063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10837" g_stop="10364" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="476" polyA_stop="491"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E227626" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10837" e_stop="10364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGA-TTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGA</genome_strand>
        <mrna_strand>AGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACATTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGGCCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552916" ref_strand="+" ref_description="SGN-E552916 [cTSB-5-H12]">
      <seq>ttccggctaagctgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccccttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcagtagttgagttgagttaaagattcattgtgaaagagatataagttaaacctttttgttcgactgaccaaatgatggtggttattagagtatttttaatcatgaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="10969" stop="10063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10669" g_stop="10364" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="307" polyA_stop="333"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E552916" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10669" e_stop="10364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGA</genome_strand>
        <mrna_strand>TTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E616828" ref_strand="+" ref_description="SGN-E616828 [90299]">
      <seq>ctaagcagttccatgactccaagatcaagttcccgttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaagctactaagccccaacttgttcatgtaacttgtntggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcattagttgagttgagttaagattcattgtgaaagagatataagttaaacctttttgttctactgaccaaatgatggtggttattagagtatttttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="10939" stop="10063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10639" g_stop="10371" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="270" polyA_stop="291"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E616828" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10639" e_stop="10371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAG-CCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTA</genome_strand>
        <mrna_strand>CTAAGCAGTTCCATGACTCCAAGATCAAGTTCCCGTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAAGCTACTAAGCCCCAACTTGTTCATGTAACTTGTNTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCATTAGTTGAGTTGAGTT-AAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCTACTGACCAAATGATGGTGGTTATTAGAGTATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732797" ref_strand="+" ref_description="SGN-E732797 [LB03AG01]">
      <seq>cgcatacgcagtgcagaggaaaagagtgccttgccgaaatggtgacgtacaagttccatcagtatcaggttgtcgggagagctttgcccaccgaaacagatgaacatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgcgaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaattaagaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcatccagatcataaagaccgcaaccattccggctaagctgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccccttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcagtagttgagttgagttaaagattcattgtgaaagagatataagttaaacctttttgttcgactgaccaaatgatggtggttattagagtatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="13023" stop="10073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12724" g_stop="12672" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="169" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="233" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10373" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="726" r_length="493" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E732797" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12724" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTT</genome_strand>
        <mrna_strand>CGCATACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346905" ref_strand="+" ref_description="SGN-E346905 [cTOF-32-D5]">
      <seq>gcgcagtgcagaggaaaagagtgccttgccgaaatggtgacgtacaagttccatcagtatcaggttgtcgggagagctttgcccaccgaaacagatgaacatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgcgaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaattaagaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacattgagatggcttctcgccacagagttcgccatcactgcatccagatcataaagaccgcaaccattccggctaagctgtgcaagagggagagccaanagcagnnccatgactccaagatcaagttccccttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcagtagttgagttgagttaaagattcattgtgaaagagatataagttaaacctttttgttcgactgaccaaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="13018" stop="10092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12719" g_stop="12672" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="164" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="228" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10392" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="702" r_length="474" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E346905" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12719" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATG</genome_strand>
        <mrna_strand>GCGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACATTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCCAANAGCAGNNCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456805" ref_strand="+" ref_description="SGN-E456805 [cSTS-30-H17]">
      <seq>gggaaagagagccttgccgaaatggtgacgtacaagttccatcagtaccaggttgtcgggagagctttgcccactgaaacagatgagcatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaactggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaagctgtgcaagagggagagcactaagcagttccatgactccaagatcaagttcccgttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcattagttgagttgagttaagattcattgtgaaagagatataagttaaacctttttggtctactgaccaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15766" stop="10094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12707" g_stop="12672" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="152" r_length="116" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="216" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10394" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="687" r_length="471" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E456805" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12707" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGA</genome_strand>
        <mrna_strand>GGGAAAGAGAGCCTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACTGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAGCTGTGCAAGAGGGAGAGCACTAAGCAGTTCCATGACTCCAAGATCAAGTTCCCGTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCATTAGTTGAGTTGAGTT-AAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGGTCTACTGACCAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221085" ref_strand="+" ref_description="SGN-E221085 [cLEL-22-P22](-)">
      <seq>tggcttctcgccacagagttcgccatcactgcatccagatcataaagaccgcaaccattccggctaagctgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccccttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcagtagttgagttgagttaaagattcattgtgaaagagatataagttaaacctttttgttcggctgnccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="11026" stop="10097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10726" g_stop="10398" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="330" polyA_stop="344"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E221085" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10726" e_stop="10398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAA</genome_strand>
        <mrna_strand>TGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGGCTGNCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221232" ref_strand="+" ref_description="SGN-E221232 [cLEL-22-P10](-)">
      <seq>tgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccccttggtgttcaaaaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcagtagttgagttgagttaaagattcattgtgaaagagatataagttaaacctttttgttcgactgcccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="10957" stop="10097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10657" g_stop="10398" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="261" polyA_stop="275"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E221232" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10657" e_stop="10398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAA</genome_strand>
        <mrna_strand>TGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAAAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574367" ref_strand="+" ref_description="SGN-E574367 [33823]">
      <seq>aaagagagcttgccgaaatggtgacgtacaagttccatcagtaccaggttgtcgggagagccttgcccactgaaacagatgagcatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgctaagtcccaaattctgggtatttcttgaggaagcttaaaaaggtgaaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaactggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaagctgtgcaagagggagagcactaagcagttccatgactccaagatcaagttcccgttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcattagttgagttgagttaagattcattgtgaaagagatataagttaaaacctttttgttctactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15763" stop="10102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12704" g_stop="12672" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="150" r_length="118" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="215" r_length="65" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10402" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="679" r_length="464" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E574367" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12704" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGT-CCAAATTCT-GGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTG-AAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTT-AAACCTTTTTGTTCGACTGA</genome_strand>
        <mrna_strand>AAAGAGAG-CTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCCTTGCCCACTGAAACAGATGAGCATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCCAAATTCTGG............................................................................................GTATTTCTTGAGGAAGCTTAAAAAGGTGAAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACTGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAGCTGTGCAAGAGGGAGAGCACTAAGCAGTTCCATGACTCCAAGATCAAGTTCCCGTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCATTAGTTGAGTTGAGTT-AAGATTCATTGTGAAAGAGATATAAGTTAAAACCTTTTTGTTCTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452132" ref_strand="+" ref_description="SGN-E452132 [cSTS-15-D6]">
      <seq>ctctatgtaaagccacttctaacttgaacactttcttcttcttctctttactcacttcggcggcaaacgtagtgcagagggaaagagagctttgccgaaatggtgacgtacaagttccatcagtaccaggttgtcgggagagccttgcccactgaaacagatgagcatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaactggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattcctgctaagctgtgcaagagggagagcacttnaaagcagttccatgactccaagatcaagttcccgttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcattagttgagttgagttaagattcattgtgaaagagatataagttaaacctttttgttctactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15820" stop="10103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15517" g_stop="15431" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="114" r_length="85" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="230" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="294" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13620" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="524" r_length="230" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13619" i_stop="10639" i_length="2981">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10638" g_stop="10403" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="759" r_length="235" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E452132" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15517" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13620"/>
          <exon e_start="10638" e_stop="10403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTTCTTCTCTTTATTAATCTCACTTCGGCGGCAAACGCAGTGCAGAGGGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTTATCGTTCAAGTTCTTGCTAATATGATTCATTAAAAGATTCACAATCTTATTCCGGAGTTTTTAATTGTCCTCAATATAAGTTTAGAGATTTCTTTCGTTAAATTTGATATGAATTGTGTAGTATTTAATTCACTTAGCATAAGTTTGAGAGAATTTTAGTTCTTTTTGGTATACGCGTGATTATGCTAGATGCATTAGTTCTGTAGAAATTTAGTTATATTGTGAATACTAATATCTCTTGGTATAAGCTCTATTGTAAATAAAAATAAATTATGATTTGGTTTAGATTATGTAAGAATACATAAACATAAATTATATACATCTTATAGTTTTAATATGAAATTACAATTTATCCCTGATAAATTCTTAATTACATTAATTTTTTAAAATTTCTAAAAACCAAATACAATAATTGAACCTCGAATCGGATACAATAATATATAACTCAAATATATTAAAAAATAGCTCGAATAAAATAAATAATGACTCGATTACTTTATTCCGCGCAACCCAAAATTGGAGCATTAAGACATGGGCCGCCTCCGCTGTGTAGCCCAAATTAGGAGCTAGGGCTCATAAATTCTTTGAACTAAAATAACTTCTTCTTCTTCTTTTCTTCATACTCACTTCGGCGGCAAACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTG</genome_strand>
        <mrna_strand>ACTTTCTTCTTCT-TCTCTTTA-CTCACTTCGGCGGCAAACGTAGTGCAGAGGGAAAGAGAGCTTTGCCGAAATGGTGACGTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCCTTGCCCACTGAAACAGATGAGCATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACTGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCTGCTAAGCTGTGCAAGAGGGAGAGCACTTN.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCAGTTCCATGACTCCAAGATCAAGTTCCCGTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCATTAGTTGAGTTGAGTT-AAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451528" ref_strand="+" ref_description="SGN-E451528 [cSTS-13-B17]">
      <seq>ggaaagatcttaccgtccgaaatgggtgacgtacaagttccatcagtaccaggttgtcgggaagagccttgcccactgaaacagaatgaagcatcccaagactttatcgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaactggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattcctgctaagctgtgcaagagggagaacttaaagccagttccatgactccaagatcaagttcccgnttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgnttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcattagttgagttgagttaagattcattgtgaaagagatataagttaaacctttttgttctactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15650" stop="10103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12707" g_stop="12672" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.694"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="157" r_length="120" r_score="0.897"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="221" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10403" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="685" r_length="464" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E451528" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12707" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGAGTGCCTTGCCGAAATG-GTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGG-AGAGCTTTGCCCACCGAAACAG-ATGAA-CATCCCAAGA-TTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAG-CAGTTCCATGACTCCAAGATCAAGTTCCC-CTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTG</genome_strand>
        <mrna_strand>GGAAAGATCTTACCGTCCGAAATGGGTGACGTACAAG..............................................................................................TTCCATCAGTACCAGGTTGTCGGGAAGAGCCTTGCCCACTGAAACAGAATGAAGCATCCCAAGACTTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACTGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCTGCTAAGCTGTGCAAGAGGGAGAACTTAAAGCCAGTTCCATGACTCCAAGATCAAGTTCCCGNTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGNTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCATTAGTTGAGTTGAGTT-AAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396270" ref_strand="+" ref_description="SGN-E396270 [TUS-44-K1]">
      <seq>ctcacttcggcggcaaacgcagtgcagaggaaaagagtgccttgccgaaatggtgacgtacaagttccatcagtatcaggttgtcgggagagctttgcccaccgaaacagatgaacatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgcgaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaattaagaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacattgagatggcttctcgccacagagttcgccatcactgcatccagatcataaagaccgcaaccattccggctaagctgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccccttggtgttcaagaaagtcaggccaccatctaggatactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcagtagttgagttgagttaaagattcattgtgaaagagatataagttaaacctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="13035" stop="10113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12735" g_stop="12672" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="180" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="244" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10413" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="697" r_length="453" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E396270" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12735" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTTCGGCGGCAAACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTT</genome_strand>
        <mrna_strand>CTCACTTCGGCGGCAAACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACATTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGATACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354017" ref_strand="+" ref_description="SGN-E354017 [cTOS-16-K13]">
      <seq>tttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaattaagaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacattgagatggcttctcgccacagagttcgccatcactgcatccagatcataaagaccgcaaccattccggctaagctgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccccttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcagtagttgagttgagttaaagattcattgtgaaagagatataagttaaacctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="12666" stop="10113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12366" g_stop="12306" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10865" g_stop="10413" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="514" r_length="453" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E354017" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12366" e_stop="12306"/>
          <exon e_start="10865" e_stop="10413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTT</genome_strand>
        <mrna_strand>TTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACATTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559571" ref_strand="+" ref_description="SGN-E559571 [19089]">
      <seq>cggcggcaaacgtagtgcagagggaaagactaaagagagccttggccgaaatggtgacgtacaagttccatcagtaccaggttgtcgggagagctttgcccactgaaacagatgagcatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaactggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaagctgtgcaagagggagagcactaagcagttccatgactccaagatcaagttcccgttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaatttttggtgcattagttgagttgagttaagattcattgtgaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15787" stop="10131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15487" g_stop="15459" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15458" i_stop="12707" i_length="2752">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12706" g_stop="12672" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="65" r_length="36" r_score="0.857"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="181" r_length="116" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="245" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10865" g_stop="10431" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="680" r_length="435" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E559571" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15487" e_stop="15459"/>
          <exon e_start="12706" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGGCAAACGCAGTGCAGAGGGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTTATCGTTCAAGTTCTTGCTAATATGATTCATTAAAAGATTCACAATCTTATTCCGGAGTTTTTAATTGTCCTCAATATAAGTTTAGAGATTTCTTTCGTTAAATTTGATATGAATTGTGTAGTATTTAATTCACTTAGCATAAGTTTGAGAGAATTTTAGTTCTTTTTGGTATACGCGTGATTATGCTAGATGCATTAGTTCTGTAGAAATTTAGTTATATTGTGAATACTAATATCTCTTGGTATAAGCTCTATTGTAAATAAAAATAAATTATGATTTGGTTTAGATTATGTAAGAATACATAAACATAAATTATATACATCTTATAGTTTTAATATGAAATTACAATTTATCCCTGATAAATTCTTAATTACATTAATTTTTTAAAATTTCTAAAAACCAAATACAATAATTGAACCTCGAATCGGATACAATAATATATAACTCAAATATATTAAAAAATAGCTCGAATAAAATAAATAATGACTCGATTACTTTATTCCGCGCAACCCAAAATTGGAGCATTAAGACATGGGCCGCCTCCGCTGTGTAGCCCAAATTAGGAGCTAGGGCTCATAAATTCTTTGAACTAAAATAACTTCTTCTTCTTCTTTTCTTCATACTCACTTCGGCGGCAAACGCAGTGCAGAGGAAAAGAGTGCCTT-GCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAA-TTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAG</genome_strand>
        <mrna_strand>CGGCGGCAAACGTAGTGCAGAGGGAAAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAGAGAGCCTTGGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACTGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAGCTGTGCAAGAGGGAGAGCACTAAGCAGTTCCATGACTCCAAGATCAAGTTCCCGTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTTGGTGCATTAGTTGAGTTGAGTT-AAGATTCATTGTGAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574831" ref_strand="+" ref_description="SGN-E574831 [34360]">
      <seq>aaacgtagtgcagagggaaagagagctttgccgaaatggtgacgtacaagttccatcagtaccaggttgtcgggagagccttgcccactgaaacagatgagcatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaactggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattcctgctaagctgtgcaagagggagagcactaagcagttccatgactccaagatcaagttcccgttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaaagcaacttcagatttatgcaattttggtgccttagttgagttgagtttaagattcattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15780" stop="10138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12721" g_stop="12672" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="166" r_length="116" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="230" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10438" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="659" r_length="429" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E574831" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12721" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAG-AAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGT</genome_strand>
        <mrna_strand>AAACGTAGTGCAGAGGGAAAGAGAGCTTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCCTTGCCCACTGAAACAGATGAGCATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACTGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCTGCTAAGCTGTGCAAGAGGGAGAGCACTAAGCAGTTCCATGACTCCAAGATCAAGTTCCCGTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAAGCAACTTCAGATTTATGCAATTTTGGTGCCTTAGTTGAGTTGAGTTTAAGATTCATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E558974" ref_strand="+" ref_description="SGN-E558974 [18399]">
      <seq>ggaaagagagccttgccgaaatggtgacgtacaagttccatcagtaccaggttgtcgggagagctttgcgccactgaaacagatgagcatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaactggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaagctgtgcaagagggagagcactaagcagttccatgactccaagatcaagttcccgttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcattagttgagttgagttaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15765" stop="10145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12706" g_stop="12672" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="152" r_length="117" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="216" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10445" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="636" r_length="420" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E558974" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12706" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGC-CCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGAT</genome_strand>
        <mrna_strand>GGAAAGAGAGCCTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCGCCACTGAAACAGATGAGCATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACTGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAGCTGTGCAAGAGGGAGAGCACTAAGCAGTTCCATGACTCCAAGATCAAGTTCCCGTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCATTAGTTGAGTTGAGTT-AAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466037" ref_strand="+" ref_description="SGN-E466037 [cPRO-23-C5]">
      <seq>gtagtgcagagggaaagactaaagagagccttgccgaaatggtgacgtacaagttccatcagtaccaggttgtcgggagagctttgcccactgaaacagatgagcatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaactggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaagctgtgcaagagggagagcactaagcagttccatgactccaagatcaagttcccgttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcattagttgagttgagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15763" stop="10150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12724" g_stop="12672" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.717"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="0.74"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="169" r_length="116" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="233" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10450" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="649" r_length="416" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E466037" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12724" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTA</genome_strand>
        <mrna_strand>GTAGTGCAGAGGGAAAGACTAAAGAGAGCCTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACTGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAGCTGTGCAAGAGGGAGAGCACTAAGCAGTTCCATGACTCCAAGATCAAGTTCCCGTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCATTAGTTGAGTTGAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235339" ref_strand="+" ref_description="SGN-E235339 [cLED-11-B21]">
      <seq>tcacttcggcggcaaacgcagtgcagaggaaaagagtgccttgccgaaatggtgacgtacaagttccatcagtatcaggttgtcgggagagctttgcccaccgaaacagatgaacatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgcgaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaattaagaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacattgagatggcttctcgccacagagttcgccatcactgcatccagatcataaagaccgcaaccattccggctaagctgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccccttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaaacccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgcaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="13034" stop="10173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12734" g_stop="12672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="179" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="243" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10473" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="636" r_length="393" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E235339" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12734" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTCGGCGGCAAACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTT</genome_strand>
        <mrna_strand>TCACTTCGGCGGCAAACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACATTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAACCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235592" ref_strand="+" ref_description="SGN-E235592 [cLED-11-P4]">
      <seq>tcacttcggcggcaaacgcagtgcagaggaaaagagtgccttgccgaaatggtgacgtacaagttccatcagtatcaggttgtcgggagagctttgcccaccgaaacagatgaacatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgcgaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaattaagaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacattgagatggcttctcgccacagagttcgccatcactgcatccagatcataaagaccgcaaccattccggctaagctgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccccttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatatgtgcattgagaagcaacttcagatttatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="13034" stop="10179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12734" g_stop="12672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="179" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="243" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10479" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="630" r_length="387" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E235592" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12734" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTCGGCGGCAAACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGC</genome_strand>
        <mrna_strand>TCACTTCGGCGGCAAACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACATTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377095" ref_strand="+" ref_description="SGN-E377095 [TUS-21-K19]">
      <seq>tcacttcggcggcaaacgcagtgcagaggaaaagagtgccttgccgaaatggtgacgtacaagttccatcagtatcaggttgtcgggagagctttgcccaccgaaacagatgaacatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgcgaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaattaagaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacattgagatggcttctcgccacagagttcgccatcactgcatccagatcataaagaccgcaaccattccggctaagctgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccccttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="13034" stop="10225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12734" g_stop="12672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="179" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="243" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10525" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="584" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E377095" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12734" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTCGGCGGCAAACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTA</genome_strand>
        <mrna_strand>TCACTTCGGCGGCAAACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACATTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476274" ref_strand="+" ref_description="SGN-E476274 [cSTB-43-L16]">
      <seq>gaatagctgtgcaaaaatggtgaattacaagttccatcagtatcaggttgttgggagagctttgccatctgaatcagatgagcatcccaagatttatcgtatgaagctgtgggctaccaatgaagttcgtgctaagtccaagttctggtattttctgaggaaacttaagaaggtgaagaagagcaacgggcagatgctggctattaatgagatctttgagaagtacccaacaaaaatcaagaactatggtatttggctccgttaccaaagtagaacgggataccataacatgtacaaggagtaccgtgacaccacattgaatggtgctgtggagcagatgtacactgagatggcttctcgtcacagagttcgccatcactgcatccagatcataaagacggccaccattccagctaagctctgcaagagggagagcactaaacagttccacgactccaagatcaagttccccttggtgttcaagaaaatcaggccaccgagtaggaaactcaagaccacatacaaggcaactaagcccaacttgtttatgtaaaacatgttttagtcgtgtgttgagaagcaatttctaaattctgcagttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15652" stop="10224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12701" g_stop="12672" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.700"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="147" r_length="116" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="211" r_length="64" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10528" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="549" r_length="338" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E476274" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12701" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGCCT-TGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCAT</genome_strand>
        <mrna_strand>GAATAGCTGTGCAAAAATGGTGAATTACAAG..............................................................................................TTCCATCAGTATCAGGTTGTTGGGAGAGCTTTGCCATCTGAATCAGATGAGCATCCCAAGATTTATCGTATGAAGCTGTGGGCTACCAATGAAGTTCGTGCTAAGTCCAAGTTCTG............................................................................................GTATTTTCTGAGGAAACTTAAGAAGGTGAAGAAGAGCAACGGGCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGAGAAGTACCCAACAAAAATCAAGAACTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCATAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGCTGTGGAGCAGATGTACACTGAGATGGCTTCTCGTCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACGGCCACCATTCCAGCTAAGCTCTGCAAGAGGGAGAGCACTAAACAGTTCCACGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAATCAGGCCACCGAGTAGGAAACTCAAGACCACATACAAGGCAACTAAGCCCAACTTGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278950" ref_strand="+" ref_description="SGN-E278950 [cLER-2-O12]">
      <seq>gcagtgcagaggaaaagagtgccttgccgaaatggtgacgtacaagttccatcagtatcaggttgtcgggagagctttgcccaccgaaacagatgaacatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgcgaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaattaagaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacattgagatggcttctcgccacagagttcgccatcactgcatccagatcataaagaccgcaaccattccggctaagctgtgcaagagggagagcacnnaacagttccatgactccaagatcaagttccccttggtgttcaagaaagtcaggccaccatctaggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="13017" stop="10268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12717" g_stop="12672" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="162" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="226" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10568" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="524" r_length="298" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E278950" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12717" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAAC</genome_strand>
        <mrna_strand>GCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACATTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACNNAACAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300474" ref_strand="+" ref_description="SGN-E300474 [cLET-45-P15]">
      <seq>gaaaagagtgccttgccgaaatggtgacgtacaagttccatcagtatcaggttgtcgggagagctttgcccaccgaaacagatgaacatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgcgaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaattaagaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgggacaccacattgaatggtggtgtggagcagatgtacattgagatggcttgtcgccacagagttcgccatcactgcatccagatcataaagaccgcaaccattccggctaagctgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="13006" stop="10302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12706" g_stop="12672" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="151" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="215" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10602" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="479" r_length="264" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E300474" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12706" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTG</genome_strand>
        <mrna_strand>GAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGGGACACCACATTGAATGGTGGTGTGGAGCAGATGTACATTGAGATGGCTTGTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340355" ref_strand="+" ref_description="SGN-E340355 [cTOF-2-H17]">
      <seq>gagcattaagacatgggccgcctccgctgtgtagcccaaattaggagctagggctcataaattctttgaactaacataacttcttcttcttcttttcttcatactcacttcggcggcaaacgcagtgcagaggaaaagagtgccttgccgaaatggtgacgtacaagttccatcagtatcaggttgtcgggagagctttgcccaccgaaacagatgaacatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgcgaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaattaagaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacattgagatggcttctcgccacagagttcgccatcactgcatccagatcataaagaccgcaaccattccggctaagctgtgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="13138" stop="10350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12838" g_stop="12672" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="283" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="347" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10650" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="563" r_length="216" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E340355" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12838" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATTAAGACATGGGCCGCCTCCGCTGTGTAGCCCAAATTAGGAGCTAGGGCTCATAAATTCTTTGAACTAAAATAACTTCTTCTTCTTCTTTTCTTCATACTCACTTCGGCGGCAAACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAG</genome_strand>
        <mrna_strand>GAGCATTAAGACATGGGCCGCCTCCGCTGTGTAGCCCAAATTAGGAGCTAGGGCTCATAAATTCTTTGAACTAACATAACTTCTTCTTCTTCTTTTCTTCATACTCACTTCGGCGGCAAACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACATTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319896" ref_strand="+" ref_description="SGN-E319896 [cTOB-12-O10]">
      <seq>cttcaactttcttcatactcacttcggcggcaaacgcagtgcagaggaaaagagtgccttgccgaaatggtgacgtacaagttccatcagtatcaggttgtcgggagagctttgcccaccgaaacagatgaacatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgcgaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaattaagaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcaaatgtacattgagatggcttctcgccacagagttcgccatcactgcatccagatcataaagaccgcaaccattccggctaagctgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="13053" stop="10352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12753" g_stop="12672" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="197" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="261" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10652" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="475" r_length="214" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E319896" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12753" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTTTCTTCATACTCACTTCGGCGGCAAACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCA</genome_strand>
        <mrna_strand>CTTCAACTTT-CTTCATACTCACTTCGGCGGCAAACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAAATGTACATTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323712" ref_strand="+" ref_description="SGN-E323712 [cTOC-2-B16]">
      <seq>ataaattctttgaactaacataacttcttcttcttcttttcttcatactcacttcggcggcaaacgcagtgcagaggaaaagagtgccttgccgaaatggtgacgtacaagttccatcagtatcaggttgtcgggagagctttgcccaccgaaacagatgaacatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgcgaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaattaagaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacattgagatggcttctcgccacagagttcgccatcactgcatccagatcataaagaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="13082" stop="10376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12782" g_stop="12672" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="227" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="291" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10676" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="481" r_length="190" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E323712" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12782" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAATTCTTTGAACTAAAATAACTTCTTCTTCTTCTTTTCTTCATACTCACTTCGGCGGCAAACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCG</genome_strand>
        <mrna_strand>ATAAATTCTTTGAACTAACATAACTTCTTCTTCTTCTTTTCTTCATACTCACTTCGGCGGCAAACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACATTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201523" ref_strand="+" ref_description="SGN-E201523 [cLEC-4-L7]">
      <seq>cgcagtgcacaggaaaagagtgccttgccgaaatggtgacgtacaagttccatcagtatcaggttgtcgggagagctttgcccaccgaaacagatgaacatcccaagatttatcgcatgaagttgtgggctacaaatgaagttcgtgcgaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaattaanaattatggtatttggctccgttaccagagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="13018" stop="10448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12718" g_stop="12672" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="163" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="227" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10748" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="345" r_length="118" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E201523" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12718" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTG</genome_strand>
        <mrna_strand>CGCAGTGCACAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGCATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATTAANAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297398" ref_strand="+" ref_description="SGN-E297398 [cLEW-14-L16]">
      <seq>aggaaaagagtgccttgccgaaatggtgacgtacaagttccatcagtatcaggttgtcgggagagctttgcccaccgaaacagatgaacatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgcgaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaattaagaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="13008" stop="10530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12708" g_stop="12672" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="153" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="12306" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="217" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10865" g_stop="10830" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="253" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E297398" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12708" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="12306"/>
          <exon e_start="10865" e_stop="10830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTGAGATTGCATTTTCAATACCCATTCATCTATATTGCCCCGATAATGTGTTCTAGGTTCAATATGTGCTGGAATCAGTGCTAAGGGCACATCCAAACCCCGAAAACTTAATGCATATGATACAAACAGTTAACATCAACCCCTGTTAACTCCTCTCAAGTAATTAACACAGTTTTCCTCAAAGTGTAAAAGAGGAGATAAGAGGCGTGTCTCTTAGTGTTCAACAGGAATTTCTAGCTATGATATGAAGTTAGAAAATGCCGCAATATCTGGGAGAAGCCCTTTTATTTGAGTTGGTTAGAATGTTCAAATGAGCAATATTGGTCCCTCTTGGCAAATGTTTTAGCAGATAAAAATTTGATTGAGGCTATACCATCTAATTGAAGTTGAGGTCTAGTTGTACCTATGTCCAATTTATATTTTTTTTTAAATGTACATTGGTCCTTTTTTGCTTAGAGCTTTTCTTATCTTGTTAGTGATTTCTTTGTTAGAAGCAAATCTAGCTAACGTTAGTGTTGGAGAACATAACTGAATAGGCAAATGAAAAATTAATTCAAATAAAAAAAATTGGTGGGGATTCATATAGTTAGTCCAACTAGCTTGGGATTAAAGCTCTGTTGTTGTTGTTTTATCTTGTTTATTACTGGCAATTATGAAATGATGCTCTCGGTACGAGGTGTTCAGTTTCATGATTGTCAATAAACAAGACAAAAAACAAATCACTAGCATGATCAAAACGGCTAGTTTAAATCATGAAAGTGTTTAGTTTTATTGCGTTTATAATCCAATGATAGTCATTCTTGGTACCTGTGCATATTATTGAAATAGAATATTTTCCCTCCTATCCGTTTCAACTGTCGGTATGACCTTAATTTTGTTTGGTTATTGTGGCACTGCATCATGCACTAATCCCTGGTTGTTTCTCTGACTGCTGTGTTTAAATTGTTTGTGGAGATTTTATAAGATCTCGTTTTTTTCCCCTCATTTTTGTGATGTGTCTTTGTTACTCCATCAAACTAGGGCATTTCATTTCAGCAATTTTTTGGTTATTCAACTATAAATGCTTTGTTGAACCTACCTCCTAACTATAATGATTGTATGTTCCAACTTTTTAGATCTTCGAGAAGAACCCAACAACAATTAAGAATTAT</genome_strand>
        <mrna_strand>AGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATTAAGAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331609" ref_strand="+" ref_description="SGN-E331609 [cTOD-7-C9]">
      <seq>gtgcagaggaaaagagtgccttgccgaaatggtgacgtacaagttccatcagtatcaggttgtcgggagagctttgcccaccgaaacagatgaacatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgcgaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgaggtacgatgaagatccatttctctagtttatcttaactgagtgtattcttagattttgtattggaaatgttatgatcagtagttcaatgatagcaaattaggtgcatggtgtttcgtatttggtaagtagtttttttatttttattttatgtgcttttggataaacaaatgtaaatcctatgaagttttggttgcatatgtgaaatttgatgtatagtttatccaagtatggctttctttttgggctgtgattattgttggtgtaagtccatcatcaagataagttttgttctttatcaaaaaacttcatctcaaaagattggatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="13014" stop="11678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12714" g_stop="12672" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12577" g_stop="12462" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="159" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12369" g_stop="11978" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="551" r_length="392" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E331609" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12714" e_stop="12672"/>
          <exon e_start="12577" e_stop="12462"/>
          <exon e_start="12369" e_stop="11978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAGGTAAAGACTTTTTTTTCTTCACTGGGTTTCCATTTTTATTTGAATCTTTCAAGGTTTGATCAACAATGGTGTTTATCTTTTGTTGTTATTGCAGTTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCGTCTTGTTTATATATGCTGGTTAATGCTTATGCTAACTGGATTTTGTTTGATTTGATATAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTA-TTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTG</genome_strand>
        <mrna_strand>GTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAG..............................................................................................TTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTG............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATCCATTTCTCTAGTTTATCTTAACTGAGTGTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTTATTTTATGTGCTTTTGGATAAACAAATGTAAATCCTATGAAGTTTTGGTTGCATATGTGAAATTTGATGTATAGTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATC-AAAAAACTTCATCTCAAAAGATTGGATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553049" ref_strand="+" ref_description="SGN-E553049 [cTSB-5-N5]">
      <seq>ctggctattaatgagatttttgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaaactgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccctttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatgtgcattgagaagcactttagatttatggaattttggtgcattagttgagttaagttgagattcattacaagttaaaacctttttgttctactgaccaaatgatggtgtttttaatcatggatttctatttgcttttatcgttcaagttcttgctaatatgattcattaaaagattcacaatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="14160" stop="13009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13849" g_stop="13310" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="555" r_length="540" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="565"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E553049" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13849" e_stop="13310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTTATCGTTCAAGTTCTTGCTAATATGATTCATTAAAAGATTCACAATCTT</genome_strand>
        <mrna_strand>ATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTTATCGTTCAAGTTCTTGCTAATATGATTCATTAAAAGATTCACAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E555624" ref_strand="+" ref_description="SGN-E555624 [cTSC-6-G22]">
      <seq>atggctattaatgagatttttgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaaactgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccctttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatgtgcattgagaagcactttagatttatggaattttggtgcattagttgagttaagttgagattcattacaagttaaaacctttttgttctactgaccaaatgatggtgtttttaatcatggatttctatttgcttttatcgttcaagttcttgctaatatgattcattaaaagattcacaatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="14160" stop="13009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13849" g_stop="13310" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="555" r_length="540" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="565"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E555624" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13849" e_stop="13310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTTATCGTTCAAGTTCTTGCTAATATGATTCATTAAAAGATTCACAATCTT</genome_strand>
        <mrna_strand>ATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTTATCGTTCAAGTTCTTGCTAATATGATTCATTAAAAGATTCACAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E556305" ref_strand="+" ref_description="SGN-E556305 [cTSD-3-B10]">
      <seq>ctggctattaatgagatttttgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaaactgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccctttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatgtgcattgagaagcactttagatttatggaattttggtgcattagttgagttaagttgagattcattacaagttaaaacctttttgttctactgaccaaatgatggtgtttttaatcatggatttctatttgcttttatcgttcaagttcttgctaatatgattcattaaaagattcacaatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="14160" stop="13009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13849" g_stop="13310" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="555" r_length="540" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="565"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E556305" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13849" e_stop="13310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTTATCGTTCAAGTTCTTGCTAATATGATTCATTAAAAGATTCACAATCTT</genome_strand>
        <mrna_strand>ATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTTATCGTTCAAGTTCTTGCTAATATGATTCATTAAAAGATTCACAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228817" ref_strand="+" ref_description="SGN-E228817 [cLEL-29-P1](-)">
      <seq>gcacaaagcagttccatgactccaagatcaagttccctttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatgtgcattgagaagcactttagatttatggaattttggtgcattagttgagttaagttgagattcattacaagttaaaacctttttgttctactgaccaaatgatggtgtttttaatcatggatttctatttgcttttatcgttcaagttcttgctaatatgattcattaaaagattcacaatcttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="13926" stop="13009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13626" g_stop="13310" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="318" polyA_stop="337"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E228817" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13626" e_stop="13310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTTATCGTTCAAGTTCTTGCTAATATGATTCATTAAAAGATTCACAATCTT</genome_strand>
        <mrna_strand>GCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTTATCGTTCAAGTTCTTGCTAATATGATTCATTAAAAGATTCACAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229105" ref_strand="+" ref_description="SGN-E229105 [cLEL-29-P1](-)">
      <seq>aaagcagttccatgactccaagatcaagttccctttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatgtgcattgagaagcactttagatttatggaattttggtgcattagttgagttaagttgagattcattacaagttaaaacctttttgttctactgaccaaatgatggtgtttttaatcatggatttctatttgcttttatcgttcaagttcttgctaatatgattcattaaaagattcacaatcttcacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="13922" stop="13010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13622" g_stop="13310" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="315" polyA_stop="333"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E229105" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13622" e_stop="13310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTTATCGTTCAAGTTCTTGCTAATATGATTCATTAAAAGATTCACAATCTT</genome_strand>
        <mrna_strand>AAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTTATCGTTCAAGTTCTTGCTAATATGATTCATTAAAAGATTCACAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344416" ref_strand="+" ref_description="SGN-E344416 [cTOF-14-M15]">
      <seq>tccaagatcaagttccctttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatgtgcattgagaagcactttagatttatggaattttggtgcattagttgagttaagttgagattcattacaagttaaaacctttttgttctactgaccaaatgatggtgtttttaatcatggatttctatttgcttttatcgttcaagttcttgctaatatgattcattaaaagattcacaatcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="13906" stop="13009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13606" g_stop="13310" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="298" polyA_stop="315"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E344416" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13606" e_stop="13310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTTATCGTTCAAGTTCTTGCTAATATGATTCATTAAAAGATTCACAATCTT</genome_strand>
        <mrna_strand>TCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTTATCGTTCAAGTTCTTGCTAATATGATTCATTAAAAGATTCACAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712934" ref_strand="+" ref_description="SGN-E712934 [FB06AH11]">
      <seq>caaacgcagtgcagagggaaagaaagccttgccgaaatggtgacttacaagttccatcagtaccaggttgtcgggagagctttgcccactgaaacagatgagcatcccaagatttaccgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatttttgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaaactgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccctttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatgtgcattgagaagcactttagatttatggaattttggtgcattagttgagttaagttgagattcattacaagttaaaacctttttgttctactgaccaaatgatggtgtttttaatcatggatttctatttgcttttatcgttaaaaaaaaaaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15781" stop="13049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15481" g_stop="15431" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="167" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="231" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13349" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="732" r_length="501" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="733" polyA_stop="752"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E712934" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15481" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACGCAGTGCAGAGGGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTTATCGTTCAA</genome_strand>
        <mrna_strand>CAAACGCAGTGCAGAGGGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTTATCGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716101" ref_strand="+" ref_description="SGN-E716101 [FB16AE05]">
      <seq>cttgccgaaatggtgacttacaagttccatcagtaccaggttgtcgggagagctttgcccactgaaacagatgagcatcccaagatttaccgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatttttgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaaactgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccctttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatgtgcattgagaagcactttagatttatggaattttggtgcattagttgagttaagttgagattcattacaagttaaaacctttttgttctactgaccaaatgatggtgtttttaatcatggatttctatttgcttttatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15754" stop="13053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15454" g_stop="15431" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="140" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="204" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13353" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="701" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E716101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15454" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTTATCGT</genome_strand>
        <mrna_strand>CTTGCCGAAATGGTGACTTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTTATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690876" ref_strand="+" ref_description="SGN-E690876 [LH_Ea04K10]">
      <seq>tgagggaaagagagccttgccgaaatggtgacttacaagttccatcagtaccaggttgtcgggagagctttgcccactgaaacagatgagcatcccaagatttaccgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctagctattaatgagatctttgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaaactgtgcaagagggagagcacaaagcagttccatgactcgaagatcaagttccctttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatgtgcattgagaagcaacttcagatttatggaattttggtgcattagttgagttgggattcattataagttaaaacctttttgttctactccctaatgatggtgtttttaatcatggatttctatttgctttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15768" stop="13057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15469" g_stop="15431" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="155" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="219" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13358" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="706" r_length="487" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="707" polyA_stop="718"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E690876" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15469" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGC-ACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTT</genome_strand>
        <mrna_strand>TGAGGGAAAGAGAGCCTTGCCGAAATGGTGACTTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTAGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCGAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCAACTTCAGATTTATGGAATTTTGGTGCATTAGTTGAGTT--G--G-GATTCATTATAAGTTAAAACCTTTTTGTTCTACT-CCCTAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694716" ref_strand="+" ref_description="SGN-E694716 [LH_Ea04K10](-)">
      <seq>gagggaaagagagccttgcggaaatggtgacttacaagttccatcagtaccaggttgtcgggagagctttgcccactgaaacagatgagcatcccaagatttaccgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctagctattaatgagatctttgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaaactgtgcaagagggagagcacaaagcagttccatgactcgaagatcaagttccctttggtgttcaagaaagtcaggccaccatttaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatgtgcattgagaagcaacttcagatttatggaattttggtgcattagttgagttgggattcattataagttaaaacctttttgttctactccctaatgaaagggtttttaatcatggatttctatttgctttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15768" stop="13057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15468" g_stop="15431" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="154" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="218" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13358" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="705" r_length="487" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="706" polyA_stop="723"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E694716" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15468" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGC-ACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTT</genome_strand>
        <mrna_strand>GAGGGAAAGAGAGCCTTGCGGAAATGGTGACTTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTAGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCGAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATTTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCAACTTCAGATTTATGGAATTTTGGTGCATTAGTTGAGTT--G--G-GATTCATTATAAGTTAAAACCTTTTTGTTCTACT-CCCTAATGAAAGGGTTTTTAATCATGGATTTCTATTTGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711725" ref_strand="+" ref_description="SGN-E711725 [FB02DB11]">
      <seq>ccattatggctattaatgagatttttgagaagaacccaacaaccatcaagaattatggtatttggctccgttaccaaagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaaactgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccctttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatgtgcattgagaagcactttagatttatggaattttggtgcattagttgagttaagttgagattcattacaagttaaaacctttttgttctactgaccaaatgatggtgtttttaatcatggatttctatttgcttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="14160" stop="13057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13849" g_stop="13358" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="512" r_length="492" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="513" polyA_stop="526"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E711725" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13849" e_stop="13358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTT</genome_strand>
        <mrna_strand>ATTTTTGAGAAGAACCCAACAACCATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223490" ref_strand="+" ref_description="SGN-E223490 [cLEL-14-P2](-)">
      <seq>gttcgccatcactgcattcagatcataaagacagcaaccattccagctaaactgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccctttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatgtgcattgagaagcactttagatttatggaattttggtgcattagttgagttaagttgagattcattacaagttaaaacctttttgttctactgaccaaatgatggtgtttttaatcatggatttctatttgcttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="13993" stop="13057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13693" g_stop="13358" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="337" polyA_stop="354"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E223490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13693" e_stop="13358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTT</genome_strand>
        <mrna_strand>GTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227977" ref_strand="+" ref_description="SGN-E227977 [cLEL-39-L18](-)">
      <seq>gatcaagttccctttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatgtgcattgagaagcactttagatttatggaattttggtgcattagttgagttaagttgagattcattacaagttaaaacctttttgttctactgaccaaatgatggtgtttttaatcatggatttctatttgcttttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="13901" stop="13057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13601" g_stop="13358" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="245" polyA_stop="263"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E227977" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13601" e_stop="13358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTT</genome_strand>
        <mrna_strand>GATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222964" ref_strand="+" ref_description="SGN-E222964 [cLEL-14-P2](-)">
      <seq>cattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaaactgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccctttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatgtgcattgagaagcactttagatttatggaattttggtgcattagttgagttaagttgagattcattacaagttaaaacctttttgttctactgaccaaatgatggtgtttttaatcatggatttctatttgcttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="14046" stop="13060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13746" g_stop="13360" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="407"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E222964" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13746" e_stop="13360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTT</genome_strand>
        <mrna_strand>CATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342890" ref_strand="+" ref_description="SGN-E342890 [cTOF-11-G17]">
      <seq>acgcagtgcagatggaaagagatccttgccgaaatggtgacttacaagttccatcagtaccaggttgttgggagagctttgccctctgaaacagatgagcatcccaagatttaccgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatttttgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaaactgtgcaagagggagaacccnagaccaagtccatgactccaagatcaagttcccttttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatgtgcattgagaagcactttagatttatggaattttggtgcattagttgagttaagttgagattcattacaagttaaaccttttttgttctactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15778" stop="13101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15478" g_stop="15431" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="164" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="228" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13401" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="679" r_length="451" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E342890" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15478" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCAGTGCAGAGGGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAA-AGCAGTTCCATGACTCCAAGATCAAGTTCCC-TTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTG</genome_strand>
        <mrna_strand>ACGCAGTGCAGATGGAAAGAGATCCTTGCCGAAATGGTGACTTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTTGGGAGAGCTTTGCCCTCTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAACCCNAGACCAAGTCCATGACTCCAAGATCAAGTTCCCTTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAACCTTTTTTGTTCTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691915" ref_strand="+" ref_description="SGN-E691915 [LH_Ea07F17]">
      <seq>ccttttgaaagagagccttgccgaaatggtgacttacaagttccatcagtaccaggttgtcgggagagctttgcccactgaaacagatgagcatcccaagatttaccgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctagctattaatgagatctttgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaaactgtgcaagagggagagcacaaagcagttccatgactcgaagatcaagttccctttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatgtgcattgagaagcaacttcagatttatggaattttggtgcattagttgagttgggattcattataagttaaaacctttttgttctactccctaaatttcccccacgggccaaattcctgcaacccgggggatcccctaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15764" stop="13094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15470" g_stop="15431" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.850"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.85"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="156" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="220" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13402" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="664" r_length="444" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E691915" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15470" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGGGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGC-ACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACT</genome_strand>
        <mrna_strand>CCTTTTGAAAGAGAGCCTTGCCGAAATGGTGACTTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTAGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCGAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCAACTTCAGATTTATGGAATTTTGGTGCATTAGTTGAGTT--G--G-GATTCATTATAAGTTAAAACCTTTTTGTTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455645" ref_strand="+" ref_description="SGN-E455645 [cSTS-26-L10]">
      <seq>ctctatgtatagccacttttaacttgaacactctttcttcttctttttactcacttcggcggcaaacgtagtgcagagggaaagagagccttgccgaaatggtgacgtacaagttccatcagtaccaggttgtcgggagagctttgcccactgaaacagatgagcatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaactggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaagctgtgcaagagggagaccttnaggcagttccatgactccaagatcaagttcccgttggtgttcaagaaagtcaggccaccatctangaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgnttggtcatatgtgcattgagaagcaacttcagatttatgcaattttggtgcattagttgagttgagttaagattcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15842" stop="10140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15517" g_stop="15431" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="113" r_length="82" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="229" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="293" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13428" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="718" r_length="425" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E455645" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15517" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTTCTTCTCTTTATTAATCTCACTTCGGCGGCAAACGCAGTGCAGAGGGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTC--ATGTGCATTGAGAAGC-ACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATT</genome_strand>
        <mrna_strand>TCTTTCTTCTTCT-T-T-TT-A-CTCACTTCGGCGGCAAACGTAGTGCAGAGGGAAAGAGAGCCTTGCCGAAATGGTGACGTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACTGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAGCTGTGCAAGAGGGAGACCTTNAGGCAGTTCCATGACTCCAAGATCAAGTTCCCGTTGGTGTTCAAGAAAGTCAGGCCACCATCTANGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGNTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCATTAGTTGAGTTGAGTTAAGATTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336698" ref_strand="+" ref_description="SGN-E336698 [cTOE-5-K17]">
      <seq>gagagccttgccgaaatggtgacttacaagttccatcagtaccaggttgttgggagagctttgccctctgaaacagatgagcatcccaagatttaccgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatttttgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaaactgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccctttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatgtgcattgagaagcactttaaatttatggaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15760" stop="13161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15460" g_stop="15431" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="146" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="210" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13461" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="599" r_length="389" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E336698" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15460" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCCTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTT</genome_strand>
        <mrna_strand>GAGAGCCTTGCCGAAATGGTGACTTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTTGGGAGAGCTTTGCCCTCTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAAATTTATGGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341134" ref_strand="+" ref_description="SGN-E341134 [cTOE-22-L11]">
      <seq>gcagtgcagagggaaagagagccttgccgaaatggtgacttacaagttccatcagtaccaggttgttgggagagctttgccctctgaaacagatgagcatcccaagatttaccgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatttttgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaaactgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccctttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatgtgcattgagaagcacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15776" stop="13176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15476" g_stop="15431" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="162" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="226" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13476" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="600" r_length="374" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E341134" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15476" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTGCAGAGGGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTT</genome_strand>
        <mrna_strand>GCAGTGCAGAGGGAAAGAGAGCCTTGCCGAAATGGTGACTTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTTGGGAGAGCTTTGCCCTCTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286847" ref_strand="+" ref_description="SGN-E286847 [cLES-14-J19]">
      <seq>cgaaatggtgacttacaagttccatcagtaccaggttgttgggagagctttgccctctgaaacagatgagcatcccaagatttaccgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatttttgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaaactgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccctttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaactngtttggtcatgtgcattgagaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15749" stop="13180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15449" g_stop="15431" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="135" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="199" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13480" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="569" r_length="370" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E286847" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15449" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCA</genome_strand>
        <mrna_strand>CGAAATGGTGACTTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTTGGGAGAGCTTTGCCCTCTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTNGTTTGGTCATGTGCATTGAGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306743" ref_strand="+" ref_description="SGN-E306743 [cLEY-19-F21]">
      <seq>cgaaatggtgacttacaagttccatcagtaccaggttgttgggagagctttgccctctgaaacagatgagcatcccaagatttaccgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatttttgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaaactgtgcaagagggagagcacaaagcagttccatgactccaagatcaagttccctttggtgttcaagaaagtcaggccaccatctaggaaactcaagaccacatacaaggctactaagcccaacttgttcatgtaacttgtttggtcatgtgcattgagaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15749" stop="13181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15449" g_stop="15431" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="135" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="199" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13481" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="568" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E306743" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15449" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGC</genome_strand>
        <mrna_strand>CGAAATGGTGACTTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTTGGGAGAGCTTTGCCCTCTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451618" ref_strand="+" ref_description="SGN-E451618 [cSTS-13-B16]">
      <seq>ggaaagagagctttgccgaaatggtgacgtacaagttccatcagtaccaggttgtcgggagagccttgcccactgaaacagatgagcatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaactggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcacatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattcctgctaagctgtgcaagagggagagcactaagcagttccatgactccgagatcaagttcccgttggtgttcaagaaagtcacgccaccatctatgaaactcaagaccacatacaaagctactaagcccaacttgttcatgtaaacttgttggtcatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15765" stop="13192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15465" g_stop="15431" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="151" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="215" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13491" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="574" r_length="359" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E451618" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15465" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGC</genome_strand>
        <mrna_strand>GGAAAGAGAGCTTTGCCGAAATGGTGACGTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCCTTGCCCACTGAAACAGATGAGCATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACTGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCACATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCTGCTAAGCTGTGCAAGAGGGAGAGCACTAAGCAGTTCCATGACTCCGAGATCAAGTTCCCGTTGGTGTTCAAGAAAGTCACGCCACCATCTATGAAACTCAAGACCACATACAAAGCTACTAAGCCCAACTTGTTCATGTAAACTTGTTGGTCATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567471" ref_strand="+" ref_description="SGN-E567471 [11602]">
      <seq>gggaaagagagccttgccgaaatggtgacgtacaagattctatcagtaccaggttgtcgggagagctttgcccactgaaacagatgagcatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacattcaagaattatggtatttggctccgttaccaaagtagaactggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaagctgtgcaagagggagagcactaagcagttccatgactccaagatcaagttcccgttggtgttcaagaaagtcaggccaactaccaggaaactcaaggacaactacaaggccaccgaaactaacttgtttatgtaaaacgtgtcttgatcttctagtggattgagttgctctttcaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15766" stop="13208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15466" g_stop="15431" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="153" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="217" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13512" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="555" r_length="338" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E567471" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15466" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAG-GTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCAT</genome_strand>
        <mrna_strand>GGGAAAGAGAGCCTTGCCGAAATGGTGACGTACAAGA.....................................................................................TTCTATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACATTCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACTGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAGCTGTGCAAGAGGGAGAGCACTAAGCAGTTCCATGACTCCAAGATCAAGTTCCCGTTGGTGTTCAAGAAAGTCAGGCCAACTACCAGGAAACTCAAGGACAACTACAAGGCCACCGAAACTAACTTGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E267317" ref_strand="+" ref_description="SGN-E267317 [cLEI-17-I23]">
      <seq>cttgccgaaatggtgacttacaagttccatcagtaccaggttgttgggagagctttgccctctgaaacagatgagcatcccaagatttaccgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatttttgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaaactgtgcaagagggagagcaccaaagagttccatgactccaagatcaagttccctttggtgttcaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15754" stop="13274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15454" g_stop="15431" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="140" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="204" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13574" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="480" r_length="276" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E267317" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15454" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAA</genome_strand>
        <mrna_strand>CTTGCCGAAATGGTGACTTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTTGGGAGAGCTTTGCCCTCTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACCAAAGAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576040" ref_strand="+" ref_description="SGN-E576040 [59194]">
      <seq>gaacactttcttcttcttctctttactcacttcggcggcaaacgtagtgcagagggaaagagagctttgccgaaatggtgacgtacaagttccatcagtaccaggttgtcgggagagccttgcccactgaaacagatgagcatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaactggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattcctgctaagctgtgcaagagggagagcactaagcagttccatgagtccaagatcaagttcccgttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15820" stop="13284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15521" g_stop="15431" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="205" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="269" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13584" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="535" r_length="266" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E576040" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15521" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTTTCTTCTTCTCTTTATTAATCTCACTTCGGCGGCAAACGCAGTGCAGAGGGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGT</genome_strand>
        <mrna_strand>GAACACTTTCTTCTTCT-TCTCTTTA-CTCACTTCGGCGGCAAACGTAGTGCAGAGGGAAAGAGAGCTTTGCCGAAATGGTGACGTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCCTTGCCCACTGAAACAGATGAGCATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACTGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCTGCTAAGCTGTGCAAGAGGGAGAGCACTAAGCAGTTCCATGAGTCCAAGATCAAGTTCCCGTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473441" ref_strand="+" ref_description="SGN-E473441 [cSTB-32-K10]">
      <seq>gagagctttgccgaaatggtgacgtacaagttccatcagtaccaggttgtcgggagagccttgcccactgaaacagatgagcatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaactggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattcctgctaagctgtgcaagagggagagcactaagcagttccatgactccaagatcaagttcccgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15760" stop="13286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15460" g_stop="15431" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="146" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="210" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13586" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="474" r_length="264" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E473441" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15460" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCCTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTG</genome_strand>
        <mrna_strand>GAGAGCTTTGCCGAAATGGTGACGTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCCTTGCCCACTGAAACAGATGAGCATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACTGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCTGCTAAGCTGTGCAAGAGGGAGAGCACTAAGCAGTTCCATGACTCCAAGATCAAGTTCCCGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458459" ref_strand="+" ref_description="SGN-E458459 [cPRO-5-F8]">
      <seq>gtagtgcagagggaaagactaaagagagccttgccgaaatggtgacgtacaagttccatcagtaccaggttgtcgggagagctttgcccactgaaacagatgagcatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaactggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaagctgtgcaagagggagagcactaagcagttccatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15763" stop="13306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15459" g_stop="15431" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="53" r_length="29" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="169" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="233" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13606" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="477" r_length="244" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E458459" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15459" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCCTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACT</genome_strand>
        <mrna_strand>AGAGCCTTGCCGAAATGGTGACGTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACTGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAGCTGTGCAAGAGGGAGAGCACTAAGCAGTTCCATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E583513" ref_strand="+" ref_description="SGN-E583513 [9334]">
      <seq>ggcaaacgtagtgcagagggaaagagagccttgccgaaatggtgacgtacaagttccatcagtaccaggttgtcgggagagctttgcccactgaaacagatgagcatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatcttcgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaactggataccacaagcatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcggccacagagttcgccatcactgcgattcagatcataaagacagggagcattccagctaaagcttgtgcaagagggagagcactaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15783" stop="13317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15483" g_stop="15431" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="169" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="233" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13617" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="471" r_length="238" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E583513" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E583513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15483" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAACGCAGTGCAGAGGGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAA-CATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTC-GCCACAGAGTTCGCCATCACTGC-ATTCAGATCATAAAGACAGCAACCATTCCAGCTAAA-C-TGTGCAAGAGGGAGAGCACAAAGCA</genome_strand>
        <mrna_strand>GGCAAACGTAGTGCAGAGGGAAAGAGAGCCTTGCCGAAATGGTGACGTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACTGGATACCACAAGCATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGGCCACAGAGTTCGCCATCACTGCGATTCAGATCATAAAGACAGGGAGCATTCCAGCTAAAGCTTGTGCAAGAGGGAGAGCACTAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318742" ref_strand="+" ref_description="SGN-E318742 [cTOB-9-L16]">
      <seq>cttacaagttccatcagtaccaggttgttgggagagctttgccctctgaaacagatgagcatcccaagatttaccgtctgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttattgaggaagcttaagaaggtgaagaagagcaacggccagatgctggctattaatgagattgttgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaacgggataccacaacatgtacaaggagtaccgggacaccacattgaatggtggtgtggagcagatgtacactgatatgccttgtggccacagagttcgccatgactgcattcagatcataaagacagcatccattgcagctaaactgcgcaagagggagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15651" stop="13325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15438" g_stop="15431" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="124" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="188" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13625" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="413" r_length="225" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E318742" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15438" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGC</genome_strand>
        <mrna_strand>CTTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTTGGGAGAGCTTTGCCCTCTGAAACAGATGAGCATCCCAAGATTTACCGTCTGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTATTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGGGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGATATGCCTTGTGGCCACAGAGTTCGCCATGACTGCATTCAGATCATAAAGACAGCATCCATTGCAGCTAAACTGCGCAAGAGGGAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339741" ref_strand="+" ref_description="SGN-E339741 [cTOE-16-D17]">
      <seq>agtgcagagggaaagagagccttgccgaaatggtgacttacaagttccatcagtaccaggttgttgggagagctttgccctctgaaacagatgagcatcccaagatttaccgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatttttgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaaccattccagctaaactgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15774" stop="13338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15474" g_stop="15431" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="160" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="224" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13638" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="436" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E339741" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15474" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGCAGAGGGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTG</genome_strand>
        <mrna_strand>AGTGCAGAGGGAAAGAGAGCCTTGCCGAAATGGTGACTTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTTGGGAGAGCTTTGCCCTCTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338160" ref_strand="+" ref_description="SGN-E338160 [cTOE-13-L17]">
      <seq>agagggaaagagagccttgccgaaatggtgacttacaagttccatcagtaccaggttgttgggagagctttgccctctgaaacagatgagcatcccaagatttaccgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatttttgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15769" stop="13356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15469" g_stop="15431" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="155" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="219" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13656" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="413" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E338160" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15469" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAAC</genome_strand>
        <mrna_strand>AGAGGGAAAGAGAGCCTTGCCGAAATGGTGACTTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTTGGGAGAGCTTTGCCCTCTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292669" ref_strand="+" ref_description="SGN-E292669 [cLET-11-G22]">
      <seq>cagtgcagagggaaagagagccttgccgaaatggtgacttacaagttccatcagtaccaggttgttgggagagctttgccctctgaaacagatgagcatcccaagatttaccgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatttttgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaagacagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15775" stop="13358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15475" g_stop="15431" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="161" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="225" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13658" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="417" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E292669" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15475" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGCAGAGGGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCA</genome_strand>
        <mrna_strand>CAGTGCAGAGGGAAAGAGAGCCTTGCCGAAATGGTGACTTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTTGGGAGAGCTTTGCCCTCTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468429" ref_strand="+" ref_description="SGN-E468429 [cSTB-3-L23]">
      <seq>gggaaagtgagctttgccgtaatggcgacctacaactttcatcacagccagttcgtcgggagtgccttgcccactgaaacacattaccatcccatgatttatcgtatgatgttgtgggctacaaatgaagttcgtgctaagtccacattctggtatttcttgaggaagcttaagaaggtgaagaatagcaacggtcatatgctggctattaatgagatcttcgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaactggattccacaacatgtacaaggagtaccgtgacaccacatcgaatggtggtgtggagcagatgtacactgagatggcttctcgccacagagttcgccatcactgcattcagatcataaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15634" stop="13364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15466" g_stop="15431" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.806"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="152" r_length="116" r_score="0.871"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="216" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.929" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13664" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="402" r_length="186" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E468429" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15466" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAG</genome_strand>
        <mrna_strand>GGGAAAGTGAGCTTTGCCGTAATGGCGACCTACAAC.....................................................................................TTTCATCACAGCCAGTTCGTCGGGAGTGCCTTGCCCACTGAAACACATTACCATCCCATGATTTATCGTATGATGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCACATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAATAGCAACGGTCATATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACTGGATTCCACAACATGTACAAGGAGTACCGTGACACCACATCGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280073" ref_strand="-" ref_description="SGN-E280073 [cLEL-7-D20](-)">
      <seq>gcacgagggaaagagagccttgccgaaatggtgacttacaagttccatcagtaccaggttgttgggagagctttgccctctgaaacagatgagcatcccaagatttaccgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatttttgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaacgggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactgagatggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15771" stop="13405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15471" g_stop="15431" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="158" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="222" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13705" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="367" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E280073" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280073" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15471" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCA-GAGGGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTT</genome_strand>
        <mrna_strand>GCACGAGGGAAAGAGAGCCTTGCCGAAATGGTGACTTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTTGGGAGAGCTTTGCCCTCTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446314" ref_strand="+" ref_description="SGN-E446314 [cSTA-20-N23]">
      <seq>gtagtgcagagggaaagagagccttgccgaaatggtgacgtacaagttccatcagtaccaggttgtcgggagagccttgcccactgaaacagatgagcatcccaagatttatcgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagatctttgagaagaacccaacaacaatcaagaattatggtatttggctccgttaccaaagtagaactggataccacaacatgtacaaggagtaccgtgacaccacattgaatggtggtgtggagcagatgtacactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15776" stop="13414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15476" g_stop="15431" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="162" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="226" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13849" g_stop="13714" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="362" r_length="136" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E446314" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15476" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
          <exon e_start="13849" e_stop="13714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTGCAGAGGGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTATGATCATGATTCATTTATCTAGTTTATCTGGACTGAGTGCATTTTTAGATTATGTATTAGAAGTCTTATGATCAATAGTTCAATGATAACAATTTTTGGTGCATGCTGTTCAGTGTTTATTTTATTTTACGTATTGGTGTTCTAATTGATTTGCGCTTTTGAATAAGTAATGTAAATCGTATGAAAAATTCTGCGGGGCTGTTATTGTACACAAGAAGCACATTCAAACCCTGTCAACTTAATGCATATGATACAAAAAGTTAATGACAACTTAATGCATATAATACAAACAGTTAACAACAACCCCCTCAAGTACTTAACTCAGCTTTCCACCAAGTTTAAAAGAGGAGATAAGAAGTGGTGTCTTACTGTGCAACAGGAAATTGATGTGATGTTAGAAATTGCTGCAATATCTCGGTGAAGCCTCTTTTTTAAAATTGGTTAGAATGTTCAAATTTGAACAATATTTGTCCCTCTTGGCCAAATTGTTAGGAGAGAAAATTTTGATAGAGGCTGTACCATCTAATGGCAGTTGAGGTCTAGTTGTACCTATGTCCAATTTTTATTTTTTTTGAAAATGTACACTGGTCAATTTTTGCTTAGAGACTTTTTGATCTTGCTAGTGATTTGTTTGTTAGAAGCAATTCTAGCTAACTTTACTGTTGGAGAACATAACTCAATAGGCAAGTAAATTTGTTCAGATGGAACAAAATCAGCGGGGATTTATATAGTTAGTTCAGCTAGCTTTGGATTAAGGCTCTATTGTTGTTGTTGGTTGTCTTGTCTATTGGCAATCATGAAATGATGCTCTTTGTGCAGATGTTCAGTTTCATGGTTGTCGATAAACAATTAAATAATTAATCACTAGCAAGATCAAAACGGCTAGTTTAAATCATGGAAGTGTCCAGTTTTGTTGCCTGTTTATGAATCCAGTGATAGTCATTCCTGGTATCTGTGCTCATTTTTGCAAATAGAATATTTTCCCTCCAATTCCTTTCAACAATTTGTATGACGTTAGTGTTTTGGTTATTGTGGCACTACATCATGCACTAATCTCTGGTTGCTTCTGTATTGTTTGTGGAGATTTTATAAGATTTCCTTATTTTTTCTCATTTTCGTGATGTCTGTTCTATCAAACTAGGAGATTTCATTTCAGCAATATTTTTGTCTCTGTGTTGGAACCTCCTAACTGTAAAGATTTTATGTTCAACTTTTTAGATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTG</genome_strand>
        <mrna_strand>GTAGTGCAGAGGGAAAGAGAGCCTTGCCGAAATGGTGACGTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTCGGGAGAGCCTTGCCCACTGAAACAGATGAGCATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACTGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284098" ref_strand="+" ref_description="SGN-E284098 [cLER-13-D15]">
      <seq>ccgaaatggtgacttacaagttccatcagtaccaggttgttgggagagctttgccctctgaaacagatgagcatcccaagatttaccgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatttcttgaggaagcttaagaaggtgaagaagagcaacggtcagatgctggctattaatgagattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15750" stop="14767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15450" g_stop="15431" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="136" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15071" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="200" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E284098" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15450" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG</genome_strand>
        <mrna_strand>CCGAAATGGTGACTTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTTGGGAGAGCTTTGCCCTCTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293807" ref_strand="+" ref_description="SGN-E293807 [cLET-37-I4]">
      <seq>cagtgcagagggaaagagagccttgccgaaatggtgacttacaagttccatcagtaccaggttgttgggagagctttgccctctgaaacagatgagcatcccaagatttaccgtatgaagttgtgggctacaaatgaagttcgtgctaagtccaaattctggtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="15775" stop="14925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15475" g_stop="15431" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15345" g_stop="15230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="161" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15134" g_stop="15130" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="166" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E293807" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>166</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15475" e_stop="15431"/>
          <exon e_start="15345" e_stop="15230"/>
          <exon e_start="15134" e_stop="15130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGCAGAGGGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAGGTAAAGACTCTTCTTTTATCACTGGCTTTCCATTTTTATTTGAATCTTATCAACAACGGTGTTTATTTTTTCGTTGTTATTGCAGTTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTGGTATTTTACAACTTTTTCCCTATCGATCTTCTTCTTTATTTATGCTGGTTTATGCTTATGCTAACTGGGTTTTGTTTGATTTGGTTTGAAAAAAGGTATT</genome_strand>
        <mrna_strand>CAGTGCAGAGGGAAAGAGAGCCTTGCCGAAATGGTGACTTACAAG.....................................................................................TTCCATCAGTACCAGGTTGTTGGGAGAGCTTTGCCCTCTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG...............................................................................................GTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727430" ref_strand="+" ref_description="SGN-E727430 [LA14CF12]">
      <seq>cggatctctgtcgggggaaagtatgagcaaagaagaggggaagaacatggcctcttcggccaccggcgaacctttgccggcaaactattactacggtacatttcaaggagtagcaaatcatccgcctcctcctccacagtctcacccggtgttcggttttcctcagcccgttcctcctcctggtgtcgccggcgctcctcctcaatactatcctcagggttatcaaactgttcacggttatgctgttgctgaaggtagacctatgagggagcaccgtcttccttgctgtggtgtggggatcggctgggtcttgttcatctctggtttctttcttggtaccataccttggtatgttggagcttttcttcttttgtgtgtacggatcgattatagagagaaggctggccttatagcatgcacattaggggccatgcttgctttgattgctgtgacttttggtgtgacaaaggcaactcattcctggtgaggctatttaggctgcaatatctaaacatatcgtggcgatctccatagaaaaagggggaaagagagaaaggatagagcaacttaagtaattggtttttgtttgtgagatgtatccttttctcaatatgtatatcaaatattgacttgggtggttcttatgctaaacaggcactttcctttgtaatgtttatgctacttcttggttttgctcaaatagtgatgtatattttttgaaaattccccaaaatataagtgcagaaatatattcagctccattgtggggactttaccattttttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="21132" stop="16653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20834" g_stop="20599" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20598" i_stop="19709" i_length="890">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19708" g_stop="19633" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="312" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19632" i_stop="19237" i_length="396">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19236" g_stop="19122" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="427" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19121" i_stop="17317" i_length="1805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17316" g_stop="16954" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="790" r_length="363" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="791" polyA_stop="800"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E727430" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20834" e_stop="20599"/>
          <exon e_start="19708" e_stop="19633"/>
          <exon e_start="19236" e_stop="19122"/>
          <exon e_start="17316" e_stop="16954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATCTCTGTCGGGGGAAAGTATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACGGTGTGTTTTCCCACAATTATATATATCTACAGGCGCTTCTATGATTACTTTTTTCTACGCTTCTTGATGAATTCTTTTTGTTTCCGTCAATTAAGTTAAAATTTGGGAATTATTAATTCAACTTTTCATCCTGTCTTTTTTAAAATAACAACAACATAGCTAGCTTAATCCCATGACTGAGATCTGGGGAGGCTATAGTGTATGCAAACCTTATTGGGAAGTAGAGAGGCTATATTAAGTATATATAGCAGGATTCGTTAAGGTACAGCTTTTGCGTGCTAATAAGTTAATTCGGGACAGAATGCAGGGTATATAATCTTTTTGTTTATAGTGTATGATCGGATGGTTGTATGGTCTTGTCATTTAGGAATTACATTTAGGGGATTGATAATATGGAGAACGCGTAGGGAAGAAATTATAGCTGTTAAATTAGAACTCATCAAAATGCCATCTGAATTTTGTATAATGTGGTGAGCTCTATCCAAAGATTTAAACATAATGAAAGAAGCATGTAAGATATATGTCTTGTGATGATATCCATTTCTACTAATCATTAAAAGCTGCACATCCCATATAGCAAAATACTCCAGAAAAATTCAAGCTGTAGCATGAATCAACTCCTGTGTGAAATCTAGATTTTTTGAATGACTTCATAGATTTTCTTCAGTTTGAACAGGGGTTATAACTATGTAATTGGCAACTTTTGTTGCTGGGAAGTGACCTTTTTTGGTACAGTCCAGCGCGTTGTGCTTGGCTGCTTATGTTAATGTTAATAAAACAAAATGTTTTCTGCTCTAATTGGTAGTTTGAAAATATTTGATTGTTCAAAACATTATTTTAATGTCAGATGATATACACCATGTTCATTATGTTTCTTCACCATGCCTTAGGTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTTGTATGTTTCTATTCTTGTGCCTTTTCTTGAGCCCTTATTTTTAAATTTTCTTTATATATTGTGGTCAGATTGGTAAATATTTTGCTTTATGCAAAAAATATGATATAGGTAATCATGCTCTGGTTTCATTATTATTTTAGAGCTTTTTCATTGTCTTTAGAGTATTATTTATATTAAAATAAAGACTGCTAAGTTGGATATTGGGGAAACAATGTGAAGGCACACGGGAATAACAACTCAGCGGTCTCAAAAAGTGTGATGTCATAGTTGCTACTGGATTTACCTCTTTTTGGGGTTCAGTGACTAGATTTTCATAAACTCAATATTACTTCTGTAAAGAGTGATTAAGATTTTCAATTTTGGCTTACTTTCATTTTTTTCTGTTTTGTTTGCAAGGTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGGGTAATTTCTCTCTTTGTCTTTCTCAAATTACTATGTGGAAGATACTTTATATGCCTTGACTATGTTAGCCTCACACTTGTAATACTGGCTTAACGTCAGAAGTATGCTCTCATTTCTATCTACTGGCATTATGAGTGATCCTAAAACTGGGATTCCTTTCACATGTGCTATGACTCTCCGTTATATTCTCCAAAAGTTATATAGTCTGACAAAAAGAGAAAAGGATGAATACGATTATGAAGAAATAAGATTACCACTTACCAAGAGATGAAACGGAAAAAGAAAATAAGGAACAAACTTAAGCAGTGTGTGGACCACTTATTTCTTTTGTTGGGGTATACTGGAAGTGGAAGGTTAAATGAGAAGTTTGAATGCTATAGAAATTGTAGATTTAATTCTTGCAGCTTGGGTGAATTAGACAAAAGATGTTTCTAGTAAGTCCTCTCATTTTTGGGATGGATAATGTGCAGTAGCAATAGTTTGTTAAGTGCTTTGTTCTTTTTTCAATTGTATGGTTGATGATATCCCTTCTGTCTAAAATTCTTGGGCATAATATGCTTTTCAAGGAGTTGAGTTGAGCAATATTGTTGTTGGTACAATAGTCAGTTTCATGGGTTACAGAGTAAAGGAAAGACTATTGGCACATAGCAAAAGTACCCTTAGAACTTATCGTTTTTAACATGTTTTGTCACTTCTATGGATATAAAAGCATGTCATAAGAGTAAAATTTGATGTAAAAGTTGAAGAGTTCGCAAATATACATTGGTGTTATTCTTTCTTTTACAAACTAACAAAAGATGTGTCCATATAAAATAGAATAGTGTGAGTAATAACATTGGTTTGGGCAGCTATAAATTTTGAGAAGAATAGATGATTTGTACTTCTAGAGTATGTGGATTTGATATTGAATAACTATATTTTGTTCCACCCTGTGGGTGCTTACCCGCCTTATCTTGGAAATTACTTCATTTCACTTAGATATCCCTTTCTATTGATATTTACCTTATGCAAGAGCAGTCCTAAACATATATTGTAACTTGGCTTTTCTATGACCATATATTAGAGGAACACTAAAAGGATGGAAAATTAGACTAGTTTAAGAGATGGATTGCATTTGGATAATTAATTCTAAGACCAACTTCTTGTAGCTGCCCTTTTTATTTTTGGCACTATAGCTTTTAGCCCCTTTTCATGTCAAGTTTGATGTTCCTGGTCTGCCAGTTTAACCCAATCATCAAAATTGTCATTCCTATGAGTCTGTGAGGAAGCATTTCTCACAAATTATACTACAATACCCTTTATTCTTAATAGAGCCAAAGTCCTATCAGACTGCTACATGAGTTCTTGGCTTTATGTATTTATGTTACTTTTCCTTCTAGTGCAGACTGTGACTGATATTCCAGAAAGCTAGGGCTTAAGTCCTTGTGTACATGTGTTCAATCTTGTTCAATCTTCTTATTCTGATCGTGGATTTGTATCCAAATATTGTGCATTTTAATTCCTCTAAATTTGAATTGGAGTAACTTCTTAGCTGGTAGATAAAAGCCTTCCATGCAAGCAAATAAGCAAATCCTGCACTGGTACTCTTGCGCACTAATCTTGTTCTGCTTGCAGAGGAATACTCAAGTCATCTGTGTAACTGTGTAGTGTCAATCATACTCTTTTTGTGTTACAGTTAAAATACCCTCTTCTGCAGTACCCAATAGAGGCACAATATCAGCACATCACTTCATTACTTCATAATTTCTCAAATTTTTCTCTTACGATATCAGCCTCTGACTCTGTTTATTTGTTCGGTAAATCAGGCCATGCTTGCTTTGATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAACATATCGTGGCGATCTCCATAGAAAAAGGGGGAAAGAGAGAAAGGATAGAGCAACTTAAGTAATTGGTTTTTGTTTGTGAGATGTATCCTTTTCTCAATATGTATATCAAATATTGACTTGGGTGGTTCTTATGCTAAACAGGCACTTTCCTTTGTAATGTTTATGCTACTTCTTGGTTTTGCTCAAATAGTGATGTATATTTTTTGAAAATTCCCCAAAATATAAGTGCAGAAATATATTCAGCTCCATTGTGGGGACTTTACCATTTTTTTTAAGA</genome_strand>
        <mrna_strand>CGGATCTCTGTCGGGGGAAAGTATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTT............................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGCTTGCTTTGATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAACATATCGTGGCGATCTCCATAGAAAAAGGGGGAAAGAGAGAAAGGATAGAGCAACTTAAGTAATTGGTTTTTGTTTGTGAGATGTATCCTTTTCTCAATATGTATATCAAATATTGACTTGGGTGGTTCTTATGCTAAACAGGCACTTTCCTTTGTAATGTTTATGCTACTTCTTGGTTTTGCTCAAATAGTGATGTATATTTTTTGAAAATTCCCCAAAATATAAGTGCAGAAATATATTCAGCTCCATTGTGGGGACTTTACCATTTTTTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541665" ref_strand="+" ref_description="SGN-E541665 [TUS-62-J6](-)">
      <seq>gtcgggggaaagtatgagcaaagaagaggggaagaacatggcctcttcggccaccggcgaacctttgccggcaaactattactacggtacatttcaaggagtagcaaatcatccgcctcctcctccacagtctcacccggtgttcggttttcctcagcccgttcctcctcctggtgtcgccggcgctcctcctcaatactatcctcagggttatcaaactgttcacggttatgctgttgctgaaggtagacctatgagggagcaccgtcttccttgctgtggtgtggggatcggctgggtcttgttcatctctggtttctttcttggtaccataccttggtatgttggagcttttcttcttttgtgtgtacggatcgattatagagagaaggctggccttatagcatgcacattaggggccatgcttgctttaattgctgtgacttttggtgtgacaaaggcaactcattcctggtgaggctatttaggctgcaatatctaaacttatcgtggcgatctccatagaaaaggggggaaagagagaaaggatagagcaacttttgtaattggtttttgtttgtgagatgtgtccttttctcagtatgtatatcaaatattgacttgggtggttcttatgctaaacaggcactttcctttgtaatgtttatgctacttcttggttttgctcaaatagtgatgtatattttttgaaaattccccaaaatataagtgcagaaatatattcagctcaaaaaaaaaaaaaaaaaactcgaggggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="21125" stop="16683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20825" g_stop="20599" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20598" i_stop="19709" i_length="890">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19708" g_stop="19633" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="303" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19632" i_stop="19237" i_length="396">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19236" g_stop="19122" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="418" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19121" i_stop="17317" i_length="1805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17316" g_stop="16984" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="751" r_length="333" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="752" polyA_stop="769"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E541665" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20825" e_stop="20599"/>
          <exon e_start="19708" e_stop="19633"/>
          <exon e_start="19236" e_stop="19122"/>
          <exon e_start="17316" e_stop="16984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGGGGGAAAGTATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACGGTGTGTTTTCCCACAATTATATATATCTACAGGCGCTTCTATGATTACTTTTTTCTACGCTTCTTGATGAATTCTTTTTGTTTCCGTCAATTAAGTTAAAATTTGGGAATTATTAATTCAACTTTTCATCCTGTCTTTTTTAAAATAACAACAACATAGCTAGCTTAATCCCATGACTGAGATCTGGGGAGGCTATAGTGTATGCAAACCTTATTGGGAAGTAGAGAGGCTATATTAAGTATATATAGCAGGATTCGTTAAGGTACAGCTTTTGCGTGCTAATAAGTTAATTCGGGACAGAATGCAGGGTATATAATCTTTTTGTTTATAGTGTATGATCGGATGGTTGTATGGTCTTGTCATTTAGGAATTACATTTAGGGGATTGATAATATGGAGAACGCGTAGGGAAGAAATTATAGCTGTTAAATTAGAACTCATCAAAATGCCATCTGAATTTTGTATAATGTGGTGAGCTCTATCCAAAGATTTAAACATAATGAAAGAAGCATGTAAGATATATGTCTTGTGATGATATCCATTTCTACTAATCATTAAAAGCTGCACATCCCATATAGCAAAATACTCCAGAAAAATTCAAGCTGTAGCATGAATCAACTCCTGTGTGAAATCTAGATTTTTTGAATGACTTCATAGATTTTCTTCAGTTTGAACAGGGGTTATAACTATGTAATTGGCAACTTTTGTTGCTGGGAAGTGACCTTTTTTGGTACAGTCCAGCGCGTTGTGCTTGGCTGCTTATGTTAATGTTAATAAAACAAAATGTTTTCTGCTCTAATTGGTAGTTTGAAAATATTTGATTGTTCAAAACATTATTTTAATGTCAGATGATATACACCATGTTCATTATGTTTCTTCACCATGCCTTAGGTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTTGTATGTTTCTATTCTTGTGCCTTTTCTTGAGCCCTTATTTTTAAATTTTCTTTATATATTGTGGTCAGATTGGTAAATATTTTGCTTTATGCAAAAAATATGATATAGGTAATCATGCTCTGGTTTCATTATTATTTTAGAGCTTTTTCATTGTCTTTAGAGTATTATTTATATTAAAATAAAGACTGCTAAGTTGGATATTGGGGAAACAATGTGAAGGCACACGGGAATAACAACTCAGCGGTCTCAAAAAGTGTGATGTCATAGTTGCTACTGGATTTACCTCTTTTTGGGGTTCAGTGACTAGATTTTCATAAACTCAATATTACTTCTGTAAAGAGTGATTAAGATTTTCAATTTTGGCTTACTTTCATTTTTTTCTGTTTTGTTTGCAAGGTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGGGTAATTTCTCTCTTTGTCTTTCTCAAATTACTATGTGGAAGATACTTTATATGCCTTGACTATGTTAGCCTCACACTTGTAATACTGGCTTAACGTCAGAAGTATGCTCTCATTTCTATCTACTGGCATTATGAGTGATCCTAAAACTGGGATTCCTTTCACATGTGCTATGACTCTCCGTTATATTCTCCAAAAGTTATATAGTCTGACAAAAAGAGAAAAGGATGAATACGATTATGAAGAAATAAGATTACCACTTACCAAGAGATGAAACGGAAAAAGAAAATAAGGAACAAACTTAAGCAGTGTGTGGACCACTTATTTCTTTTGTTGGGGTATACTGGAAGTGGAAGGTTAAATGAGAAGTTTGAATGCTATAGAAATTGTAGATTTAATTCTTGCAGCTTGGGTGAATTAGACAAAAGATGTTTCTAGTAAGTCCTCTCATTTTTGGGATGGATAATGTGCAGTAGCAATAGTTTGTTAAGTGCTTTGTTCTTTTTTCAATTGTATGGTTGATGATATCCCTTCTGTCTAAAATTCTTGGGCATAATATGCTTTTCAAGGAGTTGAGTTGAGCAATATTGTTGTTGGTACAATAGTCAGTTTCATGGGTTACAGAGTAAAGGAAAGACTATTGGCACATAGCAAAAGTACCCTTAGAACTTATCGTTTTTAACATGTTTTGTCACTTCTATGGATATAAAAGCATGTCATAAGAGTAAAATTTGATGTAAAAGTTGAAGAGTTCGCAAATATACATTGGTGTTATTCTTTCTTTTACAAACTAACAAAAGATGTGTCCATATAAAATAGAATAGTGTGAGTAATAACATTGGTTTGGGCAGCTATAAATTTTGAGAAGAATAGATGATTTGTACTTCTAGAGTATGTGGATTTGATATTGAATAACTATATTTTGTTCCACCCTGTGGGTGCTTACCCGCCTTATCTTGGAAATTACTTCATTTCACTTAGATATCCCTTTCTATTGATATTTACCTTATGCAAGAGCAGTCCTAAACATATATTGTAACTTGGCTTTTCTATGACCATATATTAGAGGAACACTAAAAGGATGGAAAATTAGACTAGTTTAAGAGATGGATTGCATTTGGATAATTAATTCTAAGACCAACTTCTTGTAGCTGCCCTTTTTATTTTTGGCACTATAGCTTTTAGCCCCTTTTCATGTCAAGTTTGATGTTCCTGGTCTGCCAGTTTAACCCAATCATCAAAATTGTCATTCCTATGAGTCTGTGAGGAAGCATTTCTCACAAATTATACTACAATACCCTTTATTCTTAATAGAGCCAAAGTCCTATCAGACTGCTACATGAGTTCTTGGCTTTATGTATTTATGTTACTTTTCCTTCTAGTGCAGACTGTGACTGATATTCCAGAAAGCTAGGGCTTAAGTCCTTGTGTACATGTGTTCAATCTTGTTCAATCTTCTTATTCTGATCGTGGATTTGTATCCAAATATTGTGCATTTTAATTCCTCTAAATTTGAATTGGAGTAACTTCTTAGCTGGTAGATAAAAGCCTTCCATGCAAGCAAATAAGCAAATCCTGCACTGGTACTCTTGCGCACTAATCTTGTTCTGCTTGCAGAGGAATACTCAAGTCATCTGTGTAACTGTGTAGTGTCAATCATACTCTTTTTGTGTTACAGTTAAAATACCCTCTTCTGCAGTACCCAATAGAGGCACAATATCAGCACATCACTTCATTACTTCATAATTTCTCAAATTTTTCTCTTACGATATCAGCCTCTGACTCTGTTTATTTGTTCGGTAAATCAGGCCATGCTTGCTTTGATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAACATATCGTGGCGATCTCCATAGAAAAAGGGGGAAAGAGAGAAAGGATAGAGCAACTTAAGTAATTGGTTTTTGTTTGTGAGATGTATCCTTTTCTCAATATGTATATCAAATATTGACTTGGGTGGTTCTTATGCTAAACAGGCACTTTCCTTTGTAATGTTTATGCTACTTCTTGGTTTTGCTCAAATAGTGATGTATATTTTTTGAAAATTCCCCAAAATATAAGTGCAGAAATATATTCAGCTCC</genome_strand>
        <mrna_strand>GTCGGGGGAAAGTATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTT............................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGCTTGCTTTAATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAACTTATCGTGGCGATCTCCATAGAAAAGGGGGGAAAGAGAGAAAGGATAGAGCAACTTTTGTAATTGGTTTTTGTTTGTGAGATGTGTCCTTTTCTCAGTATGTATATCAAATATTGACTTGGGTGGTTCTTATGCTAAACAGGCACTTTCCTTTGTAATGTTTATGCTACTTCTTGGTTTTGCTCAAATAGTGATGTATATTTTTTGAAAATTCCCCAAAATATAAGTGCAGAAATATATTCAGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356225" ref_strand="+" ref_description="SGN-E356225 [cTOS-20-P11]">
      <seq>cttggtatgttggagcttttcttcttttgtgtgtacggatcgattatagagagaaggctggccttatagcatgcacattaggggccatgcttgctttaattgctgtgacttttggtgtgacaaaggcaactcattcctggtgaggctatttaggctgcaatatctaaacttatcgtggcgatctccatagaaaaggggggaaagagagaaaggatagagcaacttttgtaattggtttttgtttgtgagatgtgtccttttctcagtatgtatatcaaatattgacttgggtggttcttatgctaaacaggcactttcctttgtaatggttatgctacttcttggttttgctcaaataatgatgtatattttttgaaaattccccaaaatataagtgcagaaatatattcagctccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="19504" stop="16683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19204" g_stop="19122" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19121" i_stop="17317" i_length="1805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17316" g_stop="16984" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="416" r_length="333" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="428"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E356225" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19204" e_stop="19122"/>
          <exon e_start="17316" e_stop="16984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGGGTAATTTCTCTCTTTGTCTTTCTCAAATTACTATGTGGAAGATACTTTATATGCCTTGACTATGTTAGCCTCACACTTGTAATACTGGCTTAACGTCAGAAGTATGCTCTCATTTCTATCTACTGGCATTATGAGTGATCCTAAAACTGGGATTCCTTTCACATGTGCTATGACTCTCCGTTATATTCTCCAAAAGTTATATAGTCTGACAAAAAGAGAAAAGGATGAATACGATTATGAAGAAATAAGATTACCACTTACCAAGAGATGAAACGGAAAAAGAAAATAAGGAACAAACTTAAGCAGTGTGTGGACCACTTATTTCTTTTGTTGGGGTATACTGGAAGTGGAAGGTTAAATGAGAAGTTTGAATGCTATAGAAATTGTAGATTTAATTCTTGCAGCTTGGGTGAATTAGACAAAAGATGTTTCTAGTAAGTCCTCTCATTTTTGGGATGGATAATGTGCAGTAGCAATAGTTTGTTAAGTGCTTTGTTCTTTTTTCAATTGTATGGTTGATGATATCCCTTCTGTCTAAAATTCTTGGGCATAATATGCTTTTCAAGGAGTTGAGTTGAGCAATATTGTTGTTGGTACAATAGTCAGTTTCATGGGTTACAGAGTAAAGGAAAGACTATTGGCACATAGCAAAAGTACCCTTAGAACTTATCGTTTTTAACATGTTTTGTCACTTCTATGGATATAAAAGCATGTCATAAGAGTAAAATTTGATGTAAAAGTTGAAGAGTTCGCAAATATACATTGGTGTTATTCTTTCTTTTACAAACTAACAAAAGATGTGTCCATATAAAATAGAATAGTGTGAGTAATAACATTGGTTTGGGCAGCTATAAATTTTGAGAAGAATAGATGATTTGTACTTCTAGAGTATGTGGATTTGATATTGAATAACTATATTTTGTTCCACCCTGTGGGTGCTTACCCGCCTTATCTTGGAAATTACTTCATTTCACTTAGATATCCCTTTCTATTGATATTTACCTTATGCAAGAGCAGTCCTAAACATATATTGTAACTTGGCTTTTCTATGACCATATATTAGAGGAACACTAAAAGGATGGAAAATTAGACTAGTTTAAGAGATGGATTGCATTTGGATAATTAATTCTAAGACCAACTTCTTGTAGCTGCCCTTTTTATTTTTGGCACTATAGCTTTTAGCCCCTTTTCATGTCAAGTTTGATGTTCCTGGTCTGCCAGTTTAACCCAATCATCAAAATTGTCATTCCTATGAGTCTGTGAGGAAGCATTTCTCACAAATTATACTACAATACCCTTTATTCTTAATAGAGCCAAAGTCCTATCAGACTGCTACATGAGTTCTTGGCTTTATGTATTTATGTTACTTTTCCTTCTAGTGCAGACTGTGACTGATATTCCAGAAAGCTAGGGCTTAAGTCCTTGTGTACATGTGTTCAATCTTGTTCAATCTTCTTATTCTGATCGTGGATTTGTATCCAAATATTGTGCATTTTAATTCCTCTAAATTTGAATTGGAGTAACTTCTTAGCTGGTAGATAAAAGCCTTCCATGCAAGCAAATAAGCAAATCCTGCACTGGTACTCTTGCGCACTAATCTTGTTCTGCTTGCAGAGGAATACTCAAGTCATCTGTGTAACTGTGTAGTGTCAATCATACTCTTTTTGTGTTACAGTTAAAATACCCTCTTCTGCAGTACCCAATAGAGGCACAATATCAGCACATCACTTCATTACTTCATAATTTCTCAAATTTTTCTCTTACGATATCAGCCTCTGACTCTGTTTATTTGTTCGGTAAATCAGGCCATGCTTGCTTTGATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAACATATCGTGGCGATCTCCATAGAAAAAGGGGGAAAGAGAGAAAGGATAGAGCAACTTAAGTAATTGGTTTTTGTTTGTGAGATGTATCCTTTTCTCAATATGTATATCAAATATTGACTTGGGTGGTTCTTATGCTAAACAGGCACTTTCCTTTGTAATGTTTATGCTACTTCTTGGTTTTGCTCAAATAGTGATGTATATTTTTTGAAAATTCCCCAAAATATAAGTGCAGAAATATATTCAGCTCC</genome_strand>
        <mrna_strand>CTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGCTTGCTTTAATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAACTTATCGTGGCGATCTCCATAGAAAAGGGGGGAAAGAGAGAAAGGATAGAGCAACTTTTGTAATTGGTTTTTGTTTGTGAGATGTGTCCTTTTCTCAGTATGTATATCAAATATTGACTTGGGTGGTTCTTATGCTAAACAGGCACTTTCCTTTGTAATGGTTATGCTACTTCTTGGTTTTGCTCAAATAATGATGTATATTTTTTGAAAATTCCCCAAAATATAAGTGCAGAAATATATTCAGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352403" ref_strand="+" ref_description="SGN-E352403 [cTOS-9-N5]">
      <seq>cttggtatgttggagcttttcttcttttgtgtgtacggatcgattatagagagaaggctggccttatagcatgcacattaggggccatgcttgctttaattgctgtgacttttggtgtgacaaaggcaactcattcctggtgaggctatttaggctgcaatatctaaacttatcgtggcgatctccatagaaaaggggggaaagagagaaaggatagagcaacttttgtaattggtttttgtttgtgagatgtgtccttttctcagtatgtatatcaaatattgacttgggtggttcttatgctaaacaggcactttcctttgtaatgtttatgctacttcttggttttgctcaaatagtgatgtatattttttgaaaattccccaaaatataagtgcagaaatatattcagctccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="19504" stop="16683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19204" g_stop="19122" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19121" i_stop="17317" i_length="1805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17316" g_stop="16984" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="416" r_length="333" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="428"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E352403" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19204" e_stop="19122"/>
          <exon e_start="17316" e_stop="16984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGGGTAATTTCTCTCTTTGTCTTTCTCAAATTACTATGTGGAAGATACTTTATATGCCTTGACTATGTTAGCCTCACACTTGTAATACTGGCTTAACGTCAGAAGTATGCTCTCATTTCTATCTACTGGCATTATGAGTGATCCTAAAACTGGGATTCCTTTCACATGTGCTATGACTCTCCGTTATATTCTCCAAAAGTTATATAGTCTGACAAAAAGAGAAAAGGATGAATACGATTATGAAGAAATAAGATTACCACTTACCAAGAGATGAAACGGAAAAAGAAAATAAGGAACAAACTTAAGCAGTGTGTGGACCACTTATTTCTTTTGTTGGGGTATACTGGAAGTGGAAGGTTAAATGAGAAGTTTGAATGCTATAGAAATTGTAGATTTAATTCTTGCAGCTTGGGTGAATTAGACAAAAGATGTTTCTAGTAAGTCCTCTCATTTTTGGGATGGATAATGTGCAGTAGCAATAGTTTGTTAAGTGCTTTGTTCTTTTTTCAATTGTATGGTTGATGATATCCCTTCTGTCTAAAATTCTTGGGCATAATATGCTTTTCAAGGAGTTGAGTTGAGCAATATTGTTGTTGGTACAATAGTCAGTTTCATGGGTTACAGAGTAAAGGAAAGACTATTGGCACATAGCAAAAGTACCCTTAGAACTTATCGTTTTTAACATGTTTTGTCACTTCTATGGATATAAAAGCATGTCATAAGAGTAAAATTTGATGTAAAAGTTGAAGAGTTCGCAAATATACATTGGTGTTATTCTTTCTTTTACAAACTAACAAAAGATGTGTCCATATAAAATAGAATAGTGTGAGTAATAACATTGGTTTGGGCAGCTATAAATTTTGAGAAGAATAGATGATTTGTACTTCTAGAGTATGTGGATTTGATATTGAATAACTATATTTTGTTCCACCCTGTGGGTGCTTACCCGCCTTATCTTGGAAATTACTTCATTTCACTTAGATATCCCTTTCTATTGATATTTACCTTATGCAAGAGCAGTCCTAAACATATATTGTAACTTGGCTTTTCTATGACCATATATTAGAGGAACACTAAAAGGATGGAAAATTAGACTAGTTTAAGAGATGGATTGCATTTGGATAATTAATTCTAAGACCAACTTCTTGTAGCTGCCCTTTTTATTTTTGGCACTATAGCTTTTAGCCCCTTTTCATGTCAAGTTTGATGTTCCTGGTCTGCCAGTTTAACCCAATCATCAAAATTGTCATTCCTATGAGTCTGTGAGGAAGCATTTCTCACAAATTATACTACAATACCCTTTATTCTTAATAGAGCCAAAGTCCTATCAGACTGCTACATGAGTTCTTGGCTTTATGTATTTATGTTACTTTTCCTTCTAGTGCAGACTGTGACTGATATTCCAGAAAGCTAGGGCTTAAGTCCTTGTGTACATGTGTTCAATCTTGTTCAATCTTCTTATTCTGATCGTGGATTTGTATCCAAATATTGTGCATTTTAATTCCTCTAAATTTGAATTGGAGTAACTTCTTAGCTGGTAGATAAAAGCCTTCCATGCAAGCAAATAAGCAAATCCTGCACTGGTACTCTTGCGCACTAATCTTGTTCTGCTTGCAGAGGAATACTCAAGTCATCTGTGTAACTGTGTAGTGTCAATCATACTCTTTTTGTGTTACAGTTAAAATACCCTCTTCTGCAGTACCCAATAGAGGCACAATATCAGCACATCACTTCATTACTTCATAATTTCTCAAATTTTTCTCTTACGATATCAGCCTCTGACTCTGTTTATTTGTTCGGTAAATCAGGCCATGCTTGCTTTGATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAACATATCGTGGCGATCTCCATAGAAAAAGGGGGAAAGAGAGAAAGGATAGAGCAACTTAAGTAATTGGTTTTTGTTTGTGAGATGTATCCTTTTCTCAATATGTATATCAAATATTGACTTGGGTGGTTCTTATGCTAAACAGGCACTTTCCTTTGTAATGTTTATGCTACTTCTTGGTTTTGCTCAAATAGTGATGTATATTTTTTGAAAATTCCCCAAAATATAAGTGCAGAAATATATTCAGCTCC</genome_strand>
        <mrna_strand>CTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGCTTGCTTTAATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAACTTATCGTGGCGATCTCCATAGAAAAGGGGGGAAAGAGAGAAAGGATAGAGCAACTTTTGTAATTGGTTTTTGTTTGTGAGATGTGTCCTTTTCTCAGTATGTATATCAAATATTGACTTGGGTGGTTCTTATGCTAAACAGGCACTTTCCTTTGTAATGTTTATGCTACTTCTTGGTTTTGCTCAAATAGTGATGTATATTTTTTGAAAATTCCCCAAAATATAAGTGCAGAAATATATTCAGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354787" ref_strand="+" ref_description="SGN-E354787 [cTOS-19-O7]">
      <seq>cttggtatgttggagcttttcttcttttgtgtgtacggatcgattatagagagaaggctggccttatagcatgcacattaggggccatgcttgctttaattgctgtgacttttggtgtgacaaaggcaactcattcctggtgaggctatttaggctgcaatatctaaacttatcgtggcgatctccatagaaaaggggggaaagagagaaaggatagagcaacttttgtaattggtttttgtttgtgaaaagtgtccttttctcaatatgtatatcaaatattgacttgggtgggtcctatgctaaacaaggaccttcccttggaatggttatgccacctcctgggtttgctccaataatgaaggataatttttgaaaattcccccaaatattagtggcgaaatatattccacttccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="19504" stop="16683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19204" g_stop="19122" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19121" i_stop="17317" i_length="1805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17316" g_stop="16989" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="411" r_length="328" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="418" polyA_stop="428"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E354787" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19204" e_stop="19122"/>
          <exon e_start="17316" e_stop="16989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGGGTAATTTCTCTCTTTGTCTTTCTCAAATTACTATGTGGAAGATACTTTATATGCCTTGACTATGTTAGCCTCACACTTGTAATACTGGCTTAACGTCAGAAGTATGCTCTCATTTCTATCTACTGGCATTATGAGTGATCCTAAAACTGGGATTCCTTTCACATGTGCTATGACTCTCCGTTATATTCTCCAAAAGTTATATAGTCTGACAAAAAGAGAAAAGGATGAATACGATTATGAAGAAATAAGATTACCACTTACCAAGAGATGAAACGGAAAAAGAAAATAAGGAACAAACTTAAGCAGTGTGTGGACCACTTATTTCTTTTGTTGGGGTATACTGGAAGTGGAAGGTTAAATGAGAAGTTTGAATGCTATAGAAATTGTAGATTTAATTCTTGCAGCTTGGGTGAATTAGACAAAAGATGTTTCTAGTAAGTCCTCTCATTTTTGGGATGGATAATGTGCAGTAGCAATAGTTTGTTAAGTGCTTTGTTCTTTTTTCAATTGTATGGTTGATGATATCCCTTCTGTCTAAAATTCTTGGGCATAATATGCTTTTCAAGGAGTTGAGTTGAGCAATATTGTTGTTGGTACAATAGTCAGTTTCATGGGTTACAGAGTAAAGGAAAGACTATTGGCACATAGCAAAAGTACCCTTAGAACTTATCGTTTTTAACATGTTTTGTCACTTCTATGGATATAAAAGCATGTCATAAGAGTAAAATTTGATGTAAAAGTTGAAGAGTTCGCAAATATACATTGGTGTTATTCTTTCTTTTACAAACTAACAAAAGATGTGTCCATATAAAATAGAATAGTGTGAGTAATAACATTGGTTTGGGCAGCTATAAATTTTGAGAAGAATAGATGATTTGTACTTCTAGAGTATGTGGATTTGATATTGAATAACTATATTTTGTTCCACCCTGTGGGTGCTTACCCGCCTTATCTTGGAAATTACTTCATTTCACTTAGATATCCCTTTCTATTGATATTTACCTTATGCAAGAGCAGTCCTAAACATATATTGTAACTTGGCTTTTCTATGACCATATATTAGAGGAACACTAAAAGGATGGAAAATTAGACTAGTTTAAGAGATGGATTGCATTTGGATAATTAATTCTAAGACCAACTTCTTGTAGCTGCCCTTTTTATTTTTGGCACTATAGCTTTTAGCCCCTTTTCATGTCAAGTTTGATGTTCCTGGTCTGCCAGTTTAACCCAATCATCAAAATTGTCATTCCTATGAGTCTGTGAGGAAGCATTTCTCACAAATTATACTACAATACCCTTTATTCTTAATAGAGCCAAAGTCCTATCAGACTGCTACATGAGTTCTTGGCTTTATGTATTTATGTTACTTTTCCTTCTAGTGCAGACTGTGACTGATATTCCAGAAAGCTAGGGCTTAAGTCCTTGTGTACATGTGTTCAATCTTGTTCAATCTTCTTATTCTGATCGTGGATTTGTATCCAAATATTGTGCATTTTAATTCCTCTAAATTTGAATTGGAGTAACTTCTTAGCTGGTAGATAAAAGCCTTCCATGCAAGCAAATAAGCAAATCCTGCACTGGTACTCTTGCGCACTAATCTTGTTCTGCTTGCAGAGGAATACTCAAGTCATCTGTGTAACTGTGTAGTGTCAATCATACTCTTTTTGTGTTACAGTTAAAATACCCTCTTCTGCAGTACCCAATAGAGGCACAATATCAGCACATCACTTCATTACTTCATAATTTCTCAAATTTTTCTCTTACGATATCAGCCTCTGACTCTGTTTATTTGTTCGGTAAATCAGGCCATGCTTGCTTTGATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAACATATCGTGGCGATCTCCATAGAAAAAGGGGGAAAGAGAGAAAGGATAGAGCAACTTAAGTAATTGGTTTTTGTTTGTGAGATGTATCCTTTTCTCAATATGTATATCAAATATTGACTTGGGTGGTTCTTATGCTAAACAGGCACTTTCCTTTGTAATGTTTATGCTACTTCTTGGTTTTGCTCAAATAGTGATGTATATTTTTTGAAAATTCCCCAAAATATAAGTGCAGAAATATATTCA</genome_strand>
        <mrna_strand>CTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGCTTGCTTTAATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAACTTATCGTGGCGATCTCCATAGAAAAGGGGGGAAAGAGAGAAAGGATAGAGCAACTTTTGTAATTGGTTTTTGTTTGTGAAAAGTGTCCTTTTCTCAATATGTATATCAAATATTGACTTGGGTGGGTCCTATGCTAAACAAGGACCTTCCCTTGGAATGGTTATGCCACCTCCTGGGTTTGCTCCAATAATGAAGGATAATTTTTGAAAATTCCCCCAAATATTAGTGGCGAAATATATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E416777" ref_strand="-" ref_description="SGN-E416777 [STM-23-J13]">
      <seq>ggtacatttcaaggagtagccaatcatccgcctcctcctccacagtttcatcaagtgttcggttttcctcagcccgttcctccgcctggtgctgccggcgctcctcctcaatactatcctcatggttatcaaactgttcacggttatgctgttgctgaaggtagacctatgagggagcaccgtcttccttgctgtggtgtggggatcggctggttcttgttcatctctggtttctttcttggtaccataccttggtacgttggagcttttcttcttctgtgtgttcggattgattatagagagaaggctggccttatagcatgcacattaggggccatgcttgctttgattgctgtgacttttggtgtgacaaaggcaactcattcctggtgaggctatccaggctgcaatatgtgaacttatcgtggcaatctccatagaaaagggggaaagagagaaaggatagagcaacttaagtaattggtttttgtttgaaagatgtatccttttctcaatatgtatagcaaatattgacttgggtggttcttatactaaacaggcactttcctttgtaatgtttatggtacttcttggttttgctccaatagtgatgtatatttttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="21040" stop="16721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20740" g_stop="20599" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20598" i_stop="19709" i_length="890">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19708" g_stop="19633" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="218" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19632" i_stop="19237" i_length="396">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.772" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19236" g_stop="19122" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="333" r_length="115" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19121" i_stop="17317" i_length="1805">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17316" g_stop="17012" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="636" r_length="303" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E416777" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416777" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20740" e_stop="20599"/>
          <exon e_start="19708" e_stop="19633"/>
          <exon e_start="19236" e_stop="19122"/>
          <exon e_start="17316" e_stop="17012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACGGTGTGTTTTCCCACAATTATATATATCTACAGGCGCTTCTATGATTACTTTTTTCTACGCTTCTTGATGAATTCTTTTTGTTTCCGTCAATTAAGTTAAAATTTGGGAATTATTAATTCAACTTTTCATCCTGTCTTTTTTAAAATAACAACAACATAGCTAGCTTAATCCCATGACTGAGATCTGGGGAGGCTATAGTGTATGCAAACCTTATTGGGAAGTAGAGAGGCTATATTAAGTATATATAGCAGGATTCGTTAAGGTACAGCTTTTGCGTGCTAATAAGTTAATTCGGGACAGAATGCAGGGTATATAATCTTTTTGTTTATAGTGTATGATCGGATGGTTGTATGGTCTTGTCATTTAGGAATTACATTTAGGGGATTGATAATATGGAGAACGCGTAGGGAAGAAATTATAGCTGTTAAATTAGAACTCATCAAAATGCCATCTGAATTTTGTATAATGTGGTGAGCTCTATCCAAAGATTTAAACATAATGAAAGAAGCATGTAAGATATATGTCTTGTGATGATATCCATTTCTACTAATCATTAAAAGCTGCACATCCCATATAGCAAAATACTCCAGAAAAATTCAAGCTGTAGCATGAATCAACTCCTGTGTGAAATCTAGATTTTTTGAATGACTTCATAGATTTTCTTCAGTTTGAACAGGGGTTATAACTATGTAATTGGCAACTTTTGTTGCTGGGAAGTGACCTTTTTTGGTACAGTCCAGCGCGTTGTGCTTGGCTGCTTATGTTAATGTTAATAAAACAAAATGTTTTCTGCTCTAATTGGTAGTTTGAAAATATTTGATTGTTCAAAACATTATTTTAATGTCAGATGATATACACCATGTTCATTATGTTTCTTCACCATGCCTTAGGTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTTGTATGTTTCTATTCTTGTGCCTTTTCTTGAGCCCTTATTTTTAAATTTTCTTTATATATTGTGGTCAGATTGGTAAATATTTTGCTTTATGCAAAAAATATGATATAGGTAATCATGCTCTGGTTTCATTATTATTTTAGAGCTTTTTCATTGTCTTTAGAGTATTATTTATATTAAAATAAAGACTGCTAAGTTGGATATTGGGGAAACAATGTGAAGGCACACGGGAATAACAACTCAGCGGTCTCAAAAAGTGTGATGTCATAGTTGCTACTGGATTTACCTCTTTTTGGGGTTCAGTGACTAGATTTTCATAAACTCAATATTACTTCTGTAAAGAGTGATTAAGATTTTCAATTTTGGCTTACTTTCATTTTTTTCTGTTTTGTTTGCAAGGTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGGGTAATTTCTCTCTTTGTCTTTCTCAAATTACTATGTGGAAGATACTTTATATGCCTTGACTATGTTAGCCTCACACTTGTAATACTGGCTTAACGTCAGAAGTATGCTCTCATTTCTATCTACTGGCATTATGAGTGATCCTAAAACTGGGATTCCTTTCACATGTGCTATGACTCTCCGTTATATTCTCCAAAAGTTATATAGTCTGACAAAAAGAGAAAAGGATGAATACGATTATGAAGAAATAAGATTACCACTTACCAAGAGATGAAACGGAAAAAGAAAATAAGGAACAAACTTAAGCAGTGTGTGGACCACTTATTTCTTTTGTTGGGGTATACTGGAAGTGGAAGGTTAAATGAGAAGTTTGAATGCTATAGAAATTGTAGATTTAATTCTTGCAGCTTGGGTGAATTAGACAAAAGATGTTTCTAGTAAGTCCTCTCATTTTTGGGATGGATAATGTGCAGTAGCAATAGTTTGTTAAGTGCTTTGTTCTTTTTTCAATTGTATGGTTGATGATATCCCTTCTGTCTAAAATTCTTGGGCATAATATGCTTTTCAAGGAGTTGAGTTGAGCAATATTGTTGTTGGTACAATAGTCAGTTTCATGGGTTACAGAGTAAAGGAAAGACTATTGGCACATAGCAAAAGTACCCTTAGAACTTATCGTTTTTAACATGTTTTGTCACTTCTATGGATATAAAAGCATGTCATAAGAGTAAAATTTGATGTAAAAGTTGAAGAGTTCGCAAATATACATTGGTGTTATTCTTTCTTTTACAAACTAACAAAAGATGTGTCCATATAAAATAGAATAGTGTGAGTAATAACATTGGTTTGGGCAGCTATAAATTTTGAGAAGAATAGATGATTTGTACTTCTAGAGTATGTGGATTTGATATTGAATAACTATATTTTGTTCCACCCTGTGGGTGCTTACCCGCCTTATCTTGGAAATTACTTCATTTCACTTAGATATCCCTTTCTATTGATATTTACCTTATGCAAGAGCAGTCCTAAACATATATTGTAACTTGGCTTTTCTATGACCATATATTAGAGGAACACTAAAAGGATGGAAAATTAGACTAGTTTAAGAGATGGATTGCATTTGGATAATTAATTCTAAGACCAACTTCTTGTAGCTGCCCTTTTTATTTTTGGCACTATAGCTTTTAGCCCCTTTTCATGTCAAGTTTGATGTTCCTGGTCTGCCAGTTTAACCCAATCATCAAAATTGTCATTCCTATGAGTCTGTGAGGAAGCATTTCTCACAAATTATACTACAATACCCTTTATTCTTAATAGAGCCAAAGTCCTATCAGACTGCTACATGAGTTCTTGGCTTTATGTATTTATGTTACTTTTCCTTCTAGTGCAGACTGTGACTGATATTCCAGAAAGCTAGGGCTTAAGTCCTTGTGTACATGTGTTCAATCTTGTTCAATCTTCTTATTCTGATCGTGGATTTGTATCCAAATATTGTGCATTTTAATTCCTCTAAATTTGAATTGGAGTAACTTCTTAGCTGGTAGATAAAAGCCTTCCATGCAAGCAAATAAGCAAATCCTGCACTGGTACTCTTGCGCACTAATCTTGTTCTGCTTGCAGAGGAATACTCAAGTCATCTGTGTAACTGTGTAGTGTCAATCATACTCTTTTTGTGTTACAGTTAAAATACCCTCTTCTGCAGTACCCAATAGAGGCACAATATCAGCACATCACTTCATTACTTCATAATTTCTCAAATTTTTCTCTTACGATATCAGCCTCTGACTCTGTTTATTTGTTCGGTAAATCAGGCCATGCTTGCTTTGATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAACATATCGTGGCGATCTCCATAGAAAAAGGGGGAAAGAGAGAAAGGATAGAGCAACTTAAGTAATTGGTTTTTGTTTGTGAGATGTATCCTTTTCTCAATATGTATATCAAATATTGACTTGGGTGGTTCTTATGCTAAACAGGCACTTTCCTTTGTAATGTTTATGCTACTTCTTGGTTTTGCTCAAATAGTGATGTATATTTTTTGAAAATTCCCCAAA</genome_strand>
        <mrna_strand>GGTACATTTCAAGGAGTAGCCAATCATCCGCCTCCTCCTCCACAGTTTCATCAAGTGTTCGGTTTTCCTCAGCCCGTTCCTCCGCCTGGTGCTGCCGGCGCTCCTCCTCAATACTATCCTCATGGTTATCAAACTGTTCACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGTTCTT............................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTACGTTGGAGCTTTTCTTCTTCTGTGTGTTCGGATTGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGCTTGCTTTGATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATCCAGGCTGCAATATGTGAACTTATCGTGGCAATCTCCATAG-AAAAGGGGGAAAGAGAGAAAGGATAGAGCAACTTAAGTAATTGGTTTTTGTTTGAAAGATGTATCCTTTTCTCAATATGTATAGCAAATATTGACTTGGGTGGTTCTTATACTAAACAGGCACTTTCCTTTGTAATGTTTATGGTACTTCTTGGTTTTGCTCCAATAGTGATGTATA-TTTTTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342087" ref_strand="+" ref_description="SGN-E342087 [cTOF-10-N16]">
      <seq>tatgagcaaagaagaggggaagaacatggcctcttcggccaccggcgaacctttgccggcaaactattactacggtacatttcaaggagtagcaaatcatccgcctcctcctccacagtctcacccggtgttcggttttcctcagcccgttcctcctcctggtgtcgccggcgctcctcctcaatactatcctcagggttatcaaactgttcacggttatgctgttgctgaaggtagacctatgagggagcaccgtcttccttgctgtggtgtggggatcggctgggtcttgttcatctctggtttctttcttggtaccataccttggtatgttggagcttttcttcttttgtgtgtacggatcgattatagagagaaggctggccttatagcatgcacattaggggccatgcttgctttaattgctgtgacttttggtgtgacaaaggcaactcattcctggtgaggctatttaggctgcaatatctaaacttatcgtggcgatctccatagaaaaggggggaaagagagaaaggatagagcaacttttgtaattggtttttgtttgtgagatgtgtccttttctcagtatgtatatcaaatattgacttggggtggttcttatgctaaacaggcactttnctttgnaatgtttatgctacttcttgggttttgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="21113" stop="16747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20813" g_stop="20599" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20598" i_stop="19709" i_length="890">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19708" g_stop="19633" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="291" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19632" i_stop="19237" i_length="396">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19236" g_stop="19122" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="406" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19121" i_stop="17317" i_length="1805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17316" g_stop="17047" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="678" r_length="272" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E342087" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20813" e_stop="20599"/>
          <exon e_start="19708" e_stop="19633"/>
          <exon e_start="19236" e_stop="19122"/>
          <exon e_start="17316" e_stop="17047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACGGTGTGTTTTCCCACAATTATATATATCTACAGGCGCTTCTATGATTACTTTTTTCTACGCTTCTTGATGAATTCTTTTTGTTTCCGTCAATTAAGTTAAAATTTGGGAATTATTAATTCAACTTTTCATCCTGTCTTTTTTAAAATAACAACAACATAGCTAGCTTAATCCCATGACTGAGATCTGGGGAGGCTATAGTGTATGCAAACCTTATTGGGAAGTAGAGAGGCTATATTAAGTATATATAGCAGGATTCGTTAAGGTACAGCTTTTGCGTGCTAATAAGTTAATTCGGGACAGAATGCAGGGTATATAATCTTTTTGTTTATAGTGTATGATCGGATGGTTGTATGGTCTTGTCATTTAGGAATTACATTTAGGGGATTGATAATATGGAGAACGCGTAGGGAAGAAATTATAGCTGTTAAATTAGAACTCATCAAAATGCCATCTGAATTTTGTATAATGTGGTGAGCTCTATCCAAAGATTTAAACATAATGAAAGAAGCATGTAAGATATATGTCTTGTGATGATATCCATTTCTACTAATCATTAAAAGCTGCACATCCCATATAGCAAAATACTCCAGAAAAATTCAAGCTGTAGCATGAATCAACTCCTGTGTGAAATCTAGATTTTTTGAATGACTTCATAGATTTTCTTCAGTTTGAACAGGGGTTATAACTATGTAATTGGCAACTTTTGTTGCTGGGAAGTGACCTTTTTTGGTACAGTCCAGCGCGTTGTGCTTGGCTGCTTATGTTAATGTTAATAAAACAAAATGTTTTCTGCTCTAATTGGTAGTTTGAAAATATTTGATTGTTCAAAACATTATTTTAATGTCAGATGATATACACCATGTTCATTATGTTTCTTCACCATGCCTTAGGTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTTGTATGTTTCTATTCTTGTGCCTTTTCTTGAGCCCTTATTTTTAAATTTTCTTTATATATTGTGGTCAGATTGGTAAATATTTTGCTTTATGCAAAAAATATGATATAGGTAATCATGCTCTGGTTTCATTATTATTTTAGAGCTTTTTCATTGTCTTTAGAGTATTATTTATATTAAAATAAAGACTGCTAAGTTGGATATTGGGGAAACAATGTGAAGGCACACGGGAATAACAACTCAGCGGTCTCAAAAAGTGTGATGTCATAGTTGCTACTGGATTTACCTCTTTTTGGGGTTCAGTGACTAGATTTTCATAAACTCAATATTACTTCTGTAAAGAGTGATTAAGATTTTCAATTTTGGCTTACTTTCATTTTTTTCTGTTTTGTTTGCAAGGTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGGGTAATTTCTCTCTTTGTCTTTCTCAAATTACTATGTGGAAGATACTTTATATGCCTTGACTATGTTAGCCTCACACTTGTAATACTGGCTTAACGTCAGAAGTATGCTCTCATTTCTATCTACTGGCATTATGAGTGATCCTAAAACTGGGATTCCTTTCACATGTGCTATGACTCTCCGTTATATTCTCCAAAAGTTATATAGTCTGACAAAAAGAGAAAAGGATGAATACGATTATGAAGAAATAAGATTACCACTTACCAAGAGATGAAACGGAAAAAGAAAATAAGGAACAAACTTAAGCAGTGTGTGGACCACTTATTTCTTTTGTTGGGGTATACTGGAAGTGGAAGGTTAAATGAGAAGTTTGAATGCTATAGAAATTGTAGATTTAATTCTTGCAGCTTGGGTGAATTAGACAAAAGATGTTTCTAGTAAGTCCTCTCATTTTTGGGATGGATAATGTGCAGTAGCAATAGTTTGTTAAGTGCTTTGTTCTTTTTTCAATTGTATGGTTGATGATATCCCTTCTGTCTAAAATTCTTGGGCATAATATGCTTTTCAAGGAGTTGAGTTGAGCAATATTGTTGTTGGTACAATAGTCAGTTTCATGGGTTACAGAGTAAAGGAAAGACTATTGGCACATAGCAAAAGTACCCTTAGAACTTATCGTTTTTAACATGTTTTGTCACTTCTATGGATATAAAAGCATGTCATAAGAGTAAAATTTGATGTAAAAGTTGAAGAGTTCGCAAATATACATTGGTGTTATTCTTTCTTTTACAAACTAACAAAAGATGTGTCCATATAAAATAGAATAGTGTGAGTAATAACATTGGTTTGGGCAGCTATAAATTTTGAGAAGAATAGATGATTTGTACTTCTAGAGTATGTGGATTTGATATTGAATAACTATATTTTGTTCCACCCTGTGGGTGCTTACCCGCCTTATCTTGGAAATTACTTCATTTCACTTAGATATCCCTTTCTATTGATATTTACCTTATGCAAGAGCAGTCCTAAACATATATTGTAACTTGGCTTTTCTATGACCATATATTAGAGGAACACTAAAAGGATGGAAAATTAGACTAGTTTAAGAGATGGATTGCATTTGGATAATTAATTCTAAGACCAACTTCTTGTAGCTGCCCTTTTTATTTTTGGCACTATAGCTTTTAGCCCCTTTTCATGTCAAGTTTGATGTTCCTGGTCTGCCAGTTTAACCCAATCATCAAAATTGTCATTCCTATGAGTCTGTGAGGAAGCATTTCTCACAAATTATACTACAATACCCTTTATTCTTAATAGAGCCAAAGTCCTATCAGACTGCTACATGAGTTCTTGGCTTTATGTATTTATGTTACTTTTCCTTCTAGTGCAGACTGTGACTGATATTCCAGAAAGCTAGGGCTTAAGTCCTTGTGTACATGTGTTCAATCTTGTTCAATCTTCTTATTCTGATCGTGGATTTGTATCCAAATATTGTGCATTTTAATTCCTCTAAATTTGAATTGGAGTAACTTCTTAGCTGGTAGATAAAAGCCTTCCATGCAAGCAAATAAGCAAATCCTGCACTGGTACTCTTGCGCACTAATCTTGTTCTGCTTGCAGAGGAATACTCAAGTCATCTGTGTAACTGTGTAGTGTCAATCATACTCTTTTTGTGTTACAGTTAAAATACCCTCTTCTGCAGTACCCAATAGAGGCACAATATCAGCACATCACTTCATTACTTCATAATTTCTCAAATTTTTCTCTTACGATATCAGCCTCTGACTCTGTTTATTTGTTCGGTAAATCAGGCCATGCTTGCTTTGATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAACATATCGTGGCGATCTCCATAGAAAAAGGGGGAAAGAGAGAAAGGATAGAGCAACTTAAGTAATTGGTTTTTGTTTGTGAGATGTATCCTTTTCTCAATATGTATATCAAATATTGACTT-GGGTGGTTCTTATGCTAAACAGGCACTTTCCTTTGTAATGTTTATGCTACTTCTT-GGTTTTGCTC</genome_strand>
        <mrna_strand>TATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTT............................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGCTTGCTTTAATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAACTTATCGTGGCGATCTCCATAGAAAAGGGGGGAAAGAGAGAAAGGATAGAGCAACTTTTGTAATTGGTTTTTGTTTGTGAGATGTGTCCTTTTCTCAGTATGTATATCAAATATTGACTTGGGGTGGTTCTTATGCTAAACAGGCACTTTNCTTTGNAATGTTTATGCTACTTCTTGGGTTTTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541668" ref_strand="+" ref_description="SGN-E541668 [TUS-62-J6]">
      <seq>cgccgatcacgtagccgcgccgatctgattctgacaatcggcgtcaaaagcgatacgactattcgaatcaatcgcggtaaggctaaactgttactagatctctgtcgggggaaagtatgagcaaagaagaggggaagaacatggcctcttcggccaccggcgaacctttgccggcaaactattactacggtacatttcaaggagtagcaaatcatccgcctcctcctccacagtctcacccggtgttcggttttcctcagcccgttcctcctcctggtgtcgccggcgctcctcctcaatactatcctcagggttatcaaactgttcacggttatgctgttgctgaaggtagacctatgagggagcaccgtcttccttgctgtggtgtggggatcggctgggtcttgttcatctctggtttctttcttggtaccataccttggtatgttggagcttttcttcttttgtgtgtacggatcgattatagagagaaggctggccttatagcatgcacattaggggccatgcttgctttaattgctgtgacttttggtgtgacaaaggcaactcattcctggtgaggctatttaggctgcaatatctaaacttatcgtggcgatctccatagaanaggggggaaagagagaaaggatagagcaacttttgtaattggtttttgtttggtgagatgtgtccttttctcagtatgtatatcaaatattgacttgggtggttcttatgctaaacaggcactttcctttgtaatgtttatgctacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="21228" stop="16758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20928" g_stop="20599" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20598" i_stop="19709" i_length="890">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19708" g_stop="19633" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="406" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19632" i_stop="19237" i_length="396">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19236" g_stop="19122" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="521" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19121" i_stop="17317" i_length="1805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17316" g_stop="17058" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="781" r_length="260" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E541668" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20928" e_stop="20599"/>
          <exon e_start="19708" e_stop="19633"/>
          <exon e_start="19236" e_stop="19122"/>
          <exon e_start="17316" e_stop="17058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGATCACGTAGCCGCGCCGATCTGATTCTGACAATCGGCGTCAAAAGCGATACGACTATTCGAATCAATCGCGGTAAGGCTAAACTGTTACTAGATCTCTGTCGGGGGAAAGTATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACGGTGTGTTTTCCCACAATTATATATATCTACAGGCGCTTCTATGATTACTTTTTTCTACGCTTCTTGATGAATTCTTTTTGTTTCCGTCAATTAAGTTAAAATTTGGGAATTATTAATTCAACTTTTCATCCTGTCTTTTTTAAAATAACAACAACATAGCTAGCTTAATCCCATGACTGAGATCTGGGGAGGCTATAGTGTATGCAAACCTTATTGGGAAGTAGAGAGGCTATATTAAGTATATATAGCAGGATTCGTTAAGGTACAGCTTTTGCGTGCTAATAAGTTAATTCGGGACAGAATGCAGGGTATATAATCTTTTTGTTTATAGTGTATGATCGGATGGTTGTATGGTCTTGTCATTTAGGAATTACATTTAGGGGATTGATAATATGGAGAACGCGTAGGGAAGAAATTATAGCTGTTAAATTAGAACTCATCAAAATGCCATCTGAATTTTGTATAATGTGGTGAGCTCTATCCAAAGATTTAAACATAATGAAAGAAGCATGTAAGATATATGTCTTGTGATGATATCCATTTCTACTAATCATTAAAAGCTGCACATCCCATATAGCAAAATACTCCAGAAAAATTCAAGCTGTAGCATGAATCAACTCCTGTGTGAAATCTAGATTTTTTGAATGACTTCATAGATTTTCTTCAGTTTGAACAGGGGTTATAACTATGTAATTGGCAACTTTTGTTGCTGGGAAGTGACCTTTTTTGGTACAGTCCAGCGCGTTGTGCTTGGCTGCTTATGTTAATGTTAATAAAACAAAATGTTTTCTGCTCTAATTGGTAGTTTGAAAATATTTGATTGTTCAAAACATTATTTTAATGTCAGATGATATACACCATGTTCATTATGTTTCTTCACCATGCCTTAGGTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTTGTATGTTTCTATTCTTGTGCCTTTTCTTGAGCCCTTATTTTTAAATTTTCTTTATATATTGTGGTCAGATTGGTAAATATTTTGCTTTATGCAAAAAATATGATATAGGTAATCATGCTCTGGTTTCATTATTATTTTAGAGCTTTTTCATTGTCTTTAGAGTATTATTTATATTAAAATAAAGACTGCTAAGTTGGATATTGGGGAAACAATGTGAAGGCACACGGGAATAACAACTCAGCGGTCTCAAAAAGTGTGATGTCATAGTTGCTACTGGATTTACCTCTTTTTGGGGTTCAGTGACTAGATTTTCATAAACTCAATATTACTTCTGTAAAGAGTGATTAAGATTTTCAATTTTGGCTTACTTTCATTTTTTTCTGTTTTGTTTGCAAGGTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGGGTAATTTCTCTCTTTGTCTTTCTCAAATTACTATGTGGAAGATACTTTATATGCCTTGACTATGTTAGCCTCACACTTGTAATACTGGCTTAACGTCAGAAGTATGCTCTCATTTCTATCTACTGGCATTATGAGTGATCCTAAAACTGGGATTCCTTTCACATGTGCTATGACTCTCCGTTATATTCTCCAAAAGTTATATAGTCTGACAAAAAGAGAAAAGGATGAATACGATTATGAAGAAATAAGATTACCACTTACCAAGAGATGAAACGGAAAAAGAAAATAAGGAACAAACTTAAGCAGTGTGTGGACCACTTATTTCTTTTGTTGGGGTATACTGGAAGTGGAAGGTTAAATGAGAAGTTTGAATGCTATAGAAATTGTAGATTTAATTCTTGCAGCTTGGGTGAATTAGACAAAAGATGTTTCTAGTAAGTCCTCTCATTTTTGGGATGGATAATGTGCAGTAGCAATAGTTTGTTAAGTGCTTTGTTCTTTTTTCAATTGTATGGTTGATGATATCCCTTCTGTCTAAAATTCTTGGGCATAATATGCTTTTCAAGGAGTTGAGTTGAGCAATATTGTTGTTGGTACAATAGTCAGTTTCATGGGTTACAGAGTAAAGGAAAGACTATTGGCACATAGCAAAAGTACCCTTAGAACTTATCGTTTTTAACATGTTTTGTCACTTCTATGGATATAAAAGCATGTCATAAGAGTAAAATTTGATGTAAAAGTTGAAGAGTTCGCAAATATACATTGGTGTTATTCTTTCTTTTACAAACTAACAAAAGATGTGTCCATATAAAATAGAATAGTGTGAGTAATAACATTGGTTTGGGCAGCTATAAATTTTGAGAAGAATAGATGATTTGTACTTCTAGAGTATGTGGATTTGATATTGAATAACTATATTTTGTTCCACCCTGTGGGTGCTTACCCGCCTTATCTTGGAAATTACTTCATTTCACTTAGATATCCCTTTCTATTGATATTTACCTTATGCAAGAGCAGTCCTAAACATATATTGTAACTTGGCTTTTCTATGACCATATATTAGAGGAACACTAAAAGGATGGAAAATTAGACTAGTTTAAGAGATGGATTGCATTTGGATAATTAATTCTAAGACCAACTTCTTGTAGCTGCCCTTTTTATTTTTGGCACTATAGCTTTTAGCCCCTTTTCATGTCAAGTTTGATGTTCCTGGTCTGCCAGTTTAACCCAATCATCAAAATTGTCATTCCTATGAGTCTGTGAGGAAGCATTTCTCACAAATTATACTACAATACCCTTTATTCTTAATAGAGCCAAAGTCCTATCAGACTGCTACATGAGTTCTTGGCTTTATGTATTTATGTTACTTTTCCTTCTAGTGCAGACTGTGACTGATATTCCAGAAAGCTAGGGCTTAAGTCCTTGTGTACATGTGTTCAATCTTGTTCAATCTTCTTATTCTGATCGTGGATTTGTATCCAAATATTGTGCATTTTAATTCCTCTAAATTTGAATTGGAGTAACTTCTTAGCTGGTAGATAAAAGCCTTCCATGCAAGCAAATAAGCAAATCCTGCACTGGTACTCTTGCGCACTAATCTTGTTCTGCTTGCAGAGGAATACTCAAGTCATCTGTGTAACTGTGTAGTGTCAATCATACTCTTTTTGTGTTACAGTTAAAATACCCTCTTCTGCAGTACCCAATAGAGGCACAATATCAGCACATCACTTCATTACTTCATAATTTCTCAAATTTTTCTCTTACGATATCAGCCTCTGACTCTGTTTATTTGTTCGGTAAATCAGGCCATGCTTGCTTTGATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAACATATCGTGGCGATCTCCATAGAAAAAGGGGGAAAGAGAGAAAGGATAGAGCAACTTAAGTAATTGGTTTTTGTTT-GTGAGATGTATCCTTTTCTCAATATGTATATCAAATATTGACTTGGGTGGTTCTTATGCTAAACAGGCACTTTCCTTTGTAATGTTTATGCTACTTCT</genome_strand>
        <mrna_strand>CGCCGATCACGTAGCCGCGCCGATCTGATTCTGACAATCGGCGTCAAAAGCGATACGACTATTCGAATCAATCGCGGTAAGGCTAAACTGTTACTAGATCTCTGTCGGGGGAAAGTATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTT............................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGCTTGCTTTAATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAACTTATCGTGGCGATCTCCATAGAANAGGGGGGAAAGAGAGAAAGGATAGAGCAACTTTTGTAATTGGTTTTTGTTTGGTGAGATGTGTCCTTTTCTCAGTATGTATATCAAATATTGACTTGGGTGGTTCTTATGCTAAACAGGCACTTTCCTTTGTAATGTTTATGCTACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449874" ref_strand="+" ref_description="SGN-E449874 [cSTS-7-B24]">
      <seq>caaggagtagccaatcatccgcctcctcctccacagtctcatcaagtgttcggttttcctcagcccgttcctccgcctggtgctgccggcgctcctcctcaatactatcctcatggttatcaaactgttcacggttatgctgttgctgaaggtagacctatgagggagcaccgtcttccttgctgtggtgtggggatcggctggttcttgttcatctctggtttctttcttggtaccataccttggtacgttggagcttttcttcttctgtgtgttcggattgattatagagagaaggctggccttatagcatgcacattagggaccatgcttgctttgattgctgtgacttttggtgtgacaaaggcaactcattcctggtgaggctatccaggctgcaatatgtgaacttatcgtggcaatctccatagaaaagggggaaagagagaaaggatagagcaacttaagtaattggtttttgtttgaaagatgtatccttttctcaatatgtatagcaaatattgacttgngtggttcttatactaaacaggcactttcctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="21031" stop="16777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20731" g_stop="20599" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20598" i_stop="19709" i_length="890">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19708" g_stop="19633" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="209" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19632" i_stop="19237" i_length="396">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.772" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19236" g_stop="19122" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="324" r_length="115" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19121" i_stop="17317" i_length="1805">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17316" g_stop="17077" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="563" r_length="239" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E449874" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20731" e_stop="20599"/>
          <exon e_start="19708" e_stop="19633"/>
          <exon e_start="19236" e_stop="19122"/>
          <exon e_start="17316" e_stop="17077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACGGTGTGTTTTCCCACAATTATATATATCTACAGGCGCTTCTATGATTACTTTTTTCTACGCTTCTTGATGAATTCTTTTTGTTTCCGTCAATTAAGTTAAAATTTGGGAATTATTAATTCAACTTTTCATCCTGTCTTTTTTAAAATAACAACAACATAGCTAGCTTAATCCCATGACTGAGATCTGGGGAGGCTATAGTGTATGCAAACCTTATTGGGAAGTAGAGAGGCTATATTAAGTATATATAGCAGGATTCGTTAAGGTACAGCTTTTGCGTGCTAATAAGTTAATTCGGGACAGAATGCAGGGTATATAATCTTTTTGTTTATAGTGTATGATCGGATGGTTGTATGGTCTTGTCATTTAGGAATTACATTTAGGGGATTGATAATATGGAGAACGCGTAGGGAAGAAATTATAGCTGTTAAATTAGAACTCATCAAAATGCCATCTGAATTTTGTATAATGTGGTGAGCTCTATCCAAAGATTTAAACATAATGAAAGAAGCATGTAAGATATATGTCTTGTGATGATATCCATTTCTACTAATCATTAAAAGCTGCACATCCCATATAGCAAAATACTCCAGAAAAATTCAAGCTGTAGCATGAATCAACTCCTGTGTGAAATCTAGATTTTTTGAATGACTTCATAGATTTTCTTCAGTTTGAACAGGGGTTATAACTATGTAATTGGCAACTTTTGTTGCTGGGAAGTGACCTTTTTTGGTACAGTCCAGCGCGTTGTGCTTGGCTGCTTATGTTAATGTTAATAAAACAAAATGTTTTCTGCTCTAATTGGTAGTTTGAAAATATTTGATTGTTCAAAACATTATTTTAATGTCAGATGATATACACCATGTTCATTATGTTTCTTCACCATGCCTTAGGTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTTGTATGTTTCTATTCTTGTGCCTTTTCTTGAGCCCTTATTTTTAAATTTTCTTTATATATTGTGGTCAGATTGGTAAATATTTTGCTTTATGCAAAAAATATGATATAGGTAATCATGCTCTGGTTTCATTATTATTTTAGAGCTTTTTCATTGTCTTTAGAGTATTATTTATATTAAAATAAAGACTGCTAAGTTGGATATTGGGGAAACAATGTGAAGGCACACGGGAATAACAACTCAGCGGTCTCAAAAAGTGTGATGTCATAGTTGCTACTGGATTTACCTCTTTTTGGGGTTCAGTGACTAGATTTTCATAAACTCAATATTACTTCTGTAAAGAGTGATTAAGATTTTCAATTTTGGCTTACTTTCATTTTTTTCTGTTTTGTTTGCAAGGTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGGGTAATTTCTCTCTTTGTCTTTCTCAAATTACTATGTGGAAGATACTTTATATGCCTTGACTATGTTAGCCTCACACTTGTAATACTGGCTTAACGTCAGAAGTATGCTCTCATTTCTATCTACTGGCATTATGAGTGATCCTAAAACTGGGATTCCTTTCACATGTGCTATGACTCTCCGTTATATTCTCCAAAAGTTATATAGTCTGACAAAAAGAGAAAAGGATGAATACGATTATGAAGAAATAAGATTACCACTTACCAAGAGATGAAACGGAAAAAGAAAATAAGGAACAAACTTAAGCAGTGTGTGGACCACTTATTTCTTTTGTTGGGGTATACTGGAAGTGGAAGGTTAAATGAGAAGTTTGAATGCTATAGAAATTGTAGATTTAATTCTTGCAGCTTGGGTGAATTAGACAAAAGATGTTTCTAGTAAGTCCTCTCATTTTTGGGATGGATAATGTGCAGTAGCAATAGTTTGTTAAGTGCTTTGTTCTTTTTTCAATTGTATGGTTGATGATATCCCTTCTGTCTAAAATTCTTGGGCATAATATGCTTTTCAAGGAGTTGAGTTGAGCAATATTGTTGTTGGTACAATAGTCAGTTTCATGGGTTACAGAGTAAAGGAAAGACTATTGGCACATAGCAAAAGTACCCTTAGAACTTATCGTTTTTAACATGTTTTGTCACTTCTATGGATATAAAAGCATGTCATAAGAGTAAAATTTGATGTAAAAGTTGAAGAGTTCGCAAATATACATTGGTGTTATTCTTTCTTTTACAAACTAACAAAAGATGTGTCCATATAAAATAGAATAGTGTGAGTAATAACATTGGTTTGGGCAGCTATAAATTTTGAGAAGAATAGATGATTTGTACTTCTAGAGTATGTGGATTTGATATTGAATAACTATATTTTGTTCCACCCTGTGGGTGCTTACCCGCCTTATCTTGGAAATTACTTCATTTCACTTAGATATCCCTTTCTATTGATATTTACCTTATGCAAGAGCAGTCCTAAACATATATTGTAACTTGGCTTTTCTATGACCATATATTAGAGGAACACTAAAAGGATGGAAAATTAGACTAGTTTAAGAGATGGATTGCATTTGGATAATTAATTCTAAGACCAACTTCTTGTAGCTGCCCTTTTTATTTTTGGCACTATAGCTTTTAGCCCCTTTTCATGTCAAGTTTGATGTTCCTGGTCTGCCAGTTTAACCCAATCATCAAAATTGTCATTCCTATGAGTCTGTGAGGAAGCATTTCTCACAAATTATACTACAATACCCTTTATTCTTAATAGAGCCAAAGTCCTATCAGACTGCTACATGAGTTCTTGGCTTTATGTATTTATGTTACTTTTCCTTCTAGTGCAGACTGTGACTGATATTCCAGAAAGCTAGGGCTTAAGTCCTTGTGTACATGTGTTCAATCTTGTTCAATCTTCTTATTCTGATCGTGGATTTGTATCCAAATATTGTGCATTTTAATTCCTCTAAATTTGAATTGGAGTAACTTCTTAGCTGGTAGATAAAAGCCTTCCATGCAAGCAAATAAGCAAATCCTGCACTGGTACTCTTGCGCACTAATCTTGTTCTGCTTGCAGAGGAATACTCAAGTCATCTGTGTAACTGTGTAGTGTCAATCATACTCTTTTTGTGTTACAGTTAAAATACCCTCTTCTGCAGTACCCAATAGAGGCACAATATCAGCACATCACTTCATTACTTCATAATTTCTCAAATTTTTCTCTTACGATATCAGCCTCTGACTCTGTTTATTTGTTCGGTAAATCAGGCCATGCTTGCTTTGATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAACATATCGTGGCGATCTCCATAGAAAAAGGGGGAAAGAGAGAAAGGATAGAGCAACTTAAGTAATTGGTTTTTGTTTGTGAGATGTATCCTTTTCTCAATATGTATATCAAATATTGACTTGGGTGGTTCTTATGCTAAACAGGCACTTTCCTTTG</genome_strand>
        <mrna_strand>CAAGGAGTAGCCAATCATCCGCCTCCTCCTCCACAGTCTCATCAAGTGTTCGGTTTTCCTCAGCCCGTTCCTCCGCCTGGTGCTGCCGGCGCTCCTCCTCAATACTATCCTCATGGTTATCAAACTGTTCACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGTTCTT............................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTACGTTGGAGCTTTTCTTCTTCTGTGTGTTCGGATTGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATGCTTGCTTTGATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATCCAGGCTGCAATATGTGAACTTATCGTGGCAATCTCCATAG-AAAAGGGGGAAAGAGAGAAAGGATAGAGCAACTTAAGTAATTGGTTTTTGTTTGAAAGATGTATCCTTTTCTCAATATGTATAGCAAATATTGACTTGNGTGGTTCTTATACTAAACAGGCACTTTCCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448279" ref_strand="+" ref_description="SGN-E448279 [cSTS-2-B23]">
      <seq>cgaaatcgccgatcacgtagccgcgccgatctgattctgacaatcggcgtcagaaacattacgacttcgactcaatcccgaaaccctaaactgttactcgatctctatcaggggaagtatgagcaaagaagacgggaagaatagggcctcttcggccaccggcgaacccttgccggcaaactattactacggtacatttcaaggagtagccaatcatccgcctcctcctccacagtctcatcaagtgttcggttttcctcagcccgttcctccgcctggtgctgccggcgctcctcctcaatactatcctcatggttatcaaactgttcacggttatgctgttgctgaaggtagacctatgagggagcaccgtcttccttgctgtggtgtggggatcggctggttcttgttcatctctggtttctttcttggtaccataccttggtacgttggagcttttcttcttctgtgtgttcggattgattatagagagaaggctggccttatagcatgcacattaggggccatgcttgctttgattgctgtgacttttggtgtgacaaaggcaactcattcctggtgaggctatccaggctgcaatatgtgaacttatcgtggcaatctccatagaaaagggggaaagagagaaaggatagagcaacttaagtaattggtttttgtttgaaagatgtatccttttctcaatatgtatagcaaatattgacttgggtggttcttatactaaacaggcactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="21234" stop="16782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20934" g_stop="20599" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20598" i_stop="19709" i_length="890">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19708" g_stop="19633" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="408" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19632" i_stop="19237" i_length="396">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.772" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19236" g_stop="19122" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="523" r_length="115" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19121" i_stop="17317" i_length="1805">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17316" g_stop="17082" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="757" r_length="234" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E448279" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20934" e_stop="20599"/>
          <exon e_start="19708" e_stop="19633"/>
          <exon e_start="19236" e_stop="19122"/>
          <exon e_start="17316" e_stop="17082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATCGCCGATCACGTAGCCGCGCCGATCTGATTCTGACAATCGGCGTCAAAAGCGATACGACTATTCGAATCAATCGCGGTAAGGCTAAACTGTTACTAGATCTCTGTCGGGGGAAAGTATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACGGTGTGTTTTCCCACAATTATATATATCTACAGGCGCTTCTATGATTACTTTTTTCTACGCTTCTTGATGAATTCTTTTTGTTTCCGTCAATTAAGTTAAAATTTGGGAATTATTAATTCAACTTTTCATCCTGTCTTTTTTAAAATAACAACAACATAGCTAGCTTAATCCCATGACTGAGATCTGGGGAGGCTATAGTGTATGCAAACCTTATTGGGAAGTAGAGAGGCTATATTAAGTATATATAGCAGGATTCGTTAAGGTACAGCTTTTGCGTGCTAATAAGTTAATTCGGGACAGAATGCAGGGTATATAATCTTTTTGTTTATAGTGTATGATCGGATGGTTGTATGGTCTTGTCATTTAGGAATTACATTTAGGGGATTGATAATATGGAGAACGCGTAGGGAAGAAATTATAGCTGTTAAATTAGAACTCATCAAAATGCCATCTGAATTTTGTATAATGTGGTGAGCTCTATCCAAAGATTTAAACATAATGAAAGAAGCATGTAAGATATATGTCTTGTGATGATATCCATTTCTACTAATCATTAAAAGCTGCACATCCCATATAGCAAAATACTCCAGAAAAATTCAAGCTGTAGCATGAATCAACTCCTGTGTGAAATCTAGATTTTTTGAATGACTTCATAGATTTTCTTCAGTTTGAACAGGGGTTATAACTATGTAATTGGCAACTTTTGTTGCTGGGAAGTGACCTTTTTTGGTACAGTCCAGCGCGTTGTGCTTGGCTGCTTATGTTAATGTTAATAAAACAAAATGTTTTCTGCTCTAATTGGTAGTTTGAAAATATTTGATTGTTCAAAACATTATTTTAATGTCAGATGATATACACCATGTTCATTATGTTTCTTCACCATGCCTTAGGTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTTGTATGTTTCTATTCTTGTGCCTTTTCTTGAGCCCTTATTTTTAAATTTTCTTTATATATTGTGGTCAGATTGGTAAATATTTTGCTTTATGCAAAAAATATGATATAGGTAATCATGCTCTGGTTTCATTATTATTTTAGAGCTTTTTCATTGTCTTTAGAGTATTATTTATATTAAAATAAAGACTGCTAAGTTGGATATTGGGGAAACAATGTGAAGGCACACGGGAATAACAACTCAGCGGTCTCAAAAAGTGTGATGTCATAGTTGCTACTGGATTTACCTCTTTTTGGGGTTCAGTGACTAGATTTTCATAAACTCAATATTACTTCTGTAAAGAGTGATTAAGATTTTCAATTTTGGCTTACTTTCATTTTTTTCTGTTTTGTTTGCAAGGTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGGGTAATTTCTCTCTTTGTCTTTCTCAAATTACTATGTGGAAGATACTTTATATGCCTTGACTATGTTAGCCTCACACTTGTAATACTGGCTTAACGTCAGAAGTATGCTCTCATTTCTATCTACTGGCATTATGAGTGATCCTAAAACTGGGATTCCTTTCACATGTGCTATGACTCTCCGTTATATTCTCCAAAAGTTATATAGTCTGACAAAAAGAGAAAAGGATGAATACGATTATGAAGAAATAAGATTACCACTTACCAAGAGATGAAACGGAAAAAGAAAATAAGGAACAAACTTAAGCAGTGTGTGGACCACTTATTTCTTTTGTTGGGGTATACTGGAAGTGGAAGGTTAAATGAGAAGTTTGAATGCTATAGAAATTGTAGATTTAATTCTTGCAGCTTGGGTGAATTAGACAAAAGATGTTTCTAGTAAGTCCTCTCATTTTTGGGATGGATAATGTGCAGTAGCAATAGTTTGTTAAGTGCTTTGTTCTTTTTTCAATTGTATGGTTGATGATATCCCTTCTGTCTAAAATTCTTGGGCATAATATGCTTTTCAAGGAGTTGAGTTGAGCAATATTGTTGTTGGTACAATAGTCAGTTTCATGGGTTACAGAGTAAAGGAAAGACTATTGGCACATAGCAAAAGTACCCTTAGAACTTATCGTTTTTAACATGTTTTGTCACTTCTATGGATATAAAAGCATGTCATAAGAGTAAAATTTGATGTAAAAGTTGAAGAGTTCGCAAATATACATTGGTGTTATTCTTTCTTTTACAAACTAACAAAAGATGTGTCCATATAAAATAGAATAGTGTGAGTAATAACATTGGTTTGGGCAGCTATAAATTTTGAGAAGAATAGATGATTTGTACTTCTAGAGTATGTGGATTTGATATTGAATAACTATATTTTGTTCCACCCTGTGGGTGCTTACCCGCCTTATCTTGGAAATTACTTCATTTCACTTAGATATCCCTTTCTATTGATATTTACCTTATGCAAGAGCAGTCCTAAACATATATTGTAACTTGGCTTTTCTATGACCATATATTAGAGGAACACTAAAAGGATGGAAAATTAGACTAGTTTAAGAGATGGATTGCATTTGGATAATTAATTCTAAGACCAACTTCTTGTAGCTGCCCTTTTTATTTTTGGCACTATAGCTTTTAGCCCCTTTTCATGTCAAGTTTGATGTTCCTGGTCTGCCAGTTTAACCCAATCATCAAAATTGTCATTCCTATGAGTCTGTGAGGAAGCATTTCTCACAAATTATACTACAATACCCTTTATTCTTAATAGAGCCAAAGTCCTATCAGACTGCTACATGAGTTCTTGGCTTTATGTATTTATGTTACTTTTCCTTCTAGTGCAGACTGTGACTGATATTCCAGAAAGCTAGGGCTTAAGTCCTTGTGTACATGTGTTCAATCTTGTTCAATCTTCTTATTCTGATCGTGGATTTGTATCCAAATATTGTGCATTTTAATTCCTCTAAATTTGAATTGGAGTAACTTCTTAGCTGGTAGATAAAAGCCTTCCATGCAAGCAAATAAGCAAATCCTGCACTGGTACTCTTGCGCACTAATCTTGTTCTGCTTGCAGAGGAATACTCAAGTCATCTGTGTAACTGTGTAGTGTCAATCATACTCTTTTTGTGTTACAGTTAAAATACCCTCTTCTGCAGTACCCAATAGAGGCACAATATCAGCACATCACTTCATTACTTCATAATTTCTCAAATTTTTCTCTTACGATATCAGCCTCTGACTCTGTTTATTTGTTCGGTAAATCAGGCCATGCTTGCTTTGATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAACATATCGTGGCGATCTCCATAGAAAAAGGGGGAAAGAGAGAAAGGATAGAGCAACTTAAGTAATTGGTTTTTGTTTGTGAGATGTATCCTTTTCTCAATATGTATATCAAATATTGACTTGGGTGGTTCTTATGCTAAACAGGCACTTTC</genome_strand>
        <mrna_strand>CGAAATCGCCGATCACGTAGCCGCGCCGATCTGATTCTGACAATCGGCGTCAGAAACATTACGAC--TTCGACTCAATC-CCGAAACCCTAAACTGTTACTCGATCTCTATCAGGGG-AAGTATGAGCAAAGAAGACGGGAAGAATAGGGCCTCTTCGGCCACCGGCGAACCCTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCCAATCATCCGCCTCCTCCTCCACAGTCTCATCAAGTGTTCGGTTTTCCTCAGCCCGTTCCTCCGCCTGGTGCTGCCGGCGCTCCTCCTCAATACTATCCTCATGGTTATCAAACTGTTCACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGTTCTT............................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTACGTTGGAGCTTTTCTTCTTCTGTGTGTTCGGATTGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGCTTGCTTTGATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATCCAGGCTGCAATATGTGAACTTATCGTGGCAATCTCCATAG-AAAAGGGGGAAAGAGAGAAAGGATAGAGCAACTTAAGTAATTGGTTTTTGTTTGAAAGATGTATCCTTTTCTCAATATGTATAGCAAATATTGACTTGGGTGGTTCTTATACTAAACAGGCACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254719" ref_strand="+" ref_description="SGN-E254719 [cLEG-29-J20]">
      <seq>ccgccttctcctccacagtctcacccggtgttctgttttcctcaacccgttcctactcctggtgtcgccggcgctcctcctcaatactatcctcagggttatcaaactgttcacggctatgctgatgctgaaggtagacctatgagggagcaccgtcttccttgctgtggtgtggggatcggctgggtcttgttcatctctggtttctttcttggtaccataccttggtatgttggagctttccttcttttgtgtgtacggatcgattatagagagaaggctggccttatagcatgcacattaggggccatgcttgctctaatcgctgtgacttttggtgtgacaaaggcaactcattcctggtgaggctattcaagctgcaatatctaaacttatcgaggcgatctccatagaaaaggggggaaccagagaaaggatggagcaacttttgtaataggtttttgtttgtgagatgtgtccttttctcactatgtatatcacatattgacttgggtggttcttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="21013" stop="16798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20713" g_stop="20599" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20598" i_stop="19709" i_length="890">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19708" g_stop="19633" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="191" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19632" i_stop="19237" i_length="396">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19236" g_stop="19122" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="306" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19121" i_stop="17317" i_length="1805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17316" g_stop="17098" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="525" r_length="219" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E254719" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20713" e_stop="20599"/>
          <exon e_start="19708" e_stop="19633"/>
          <exon e_start="19236" e_stop="19122"/>
          <exon e_start="17316" e_stop="17098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACGGTGTGTTTTCCCACAATTATATATATCTACAGGCGCTTCTATGATTACTTTTTTCTACGCTTCTTGATGAATTCTTTTTGTTTCCGTCAATTAAGTTAAAATTTGGGAATTATTAATTCAACTTTTCATCCTGTCTTTTTTAAAATAACAACAACATAGCTAGCTTAATCCCATGACTGAGATCTGGGGAGGCTATAGTGTATGCAAACCTTATTGGGAAGTAGAGAGGCTATATTAAGTATATATAGCAGGATTCGTTAAGGTACAGCTTTTGCGTGCTAATAAGTTAATTCGGGACAGAATGCAGGGTATATAATCTTTTTGTTTATAGTGTATGATCGGATGGTTGTATGGTCTTGTCATTTAGGAATTACATTTAGGGGATTGATAATATGGAGAACGCGTAGGGAAGAAATTATAGCTGTTAAATTAGAACTCATCAAAATGCCATCTGAATTTTGTATAATGTGGTGAGCTCTATCCAAAGATTTAAACATAATGAAAGAAGCATGTAAGATATATGTCTTGTGATGATATCCATTTCTACTAATCATTAAAAGCTGCACATCCCATATAGCAAAATACTCCAGAAAAATTCAAGCTGTAGCATGAATCAACTCCTGTGTGAAATCTAGATTTTTTGAATGACTTCATAGATTTTCTTCAGTTTGAACAGGGGTTATAACTATGTAATTGGCAACTTTTGTTGCTGGGAAGTGACCTTTTTTGGTACAGTCCAGCGCGTTGTGCTTGGCTGCTTATGTTAATGTTAATAAAACAAAATGTTTTCTGCTCTAATTGGTAGTTTGAAAATATTTGATTGTTCAAAACATTATTTTAATGTCAGATGATATACACCATGTTCATTATGTTTCTTCACCATGCCTTAGGTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTTGTATGTTTCTATTCTTGTGCCTTTTCTTGAGCCCTTATTTTTAAATTTTCTTTATATATTGTGGTCAGATTGGTAAATATTTTGCTTTATGCAAAAAATATGATATAGGTAATCATGCTCTGGTTTCATTATTATTTTAGAGCTTTTTCATTGTCTTTAGAGTATTATTTATATTAAAATAAAGACTGCTAAGTTGGATATTGGGGAAACAATGTGAAGGCACACGGGAATAACAACTCAGCGGTCTCAAAAAGTGTGATGTCATAGTTGCTACTGGATTTACCTCTTTTTGGGGTTCAGTGACTAGATTTTCATAAACTCAATATTACTTCTGTAAAGAGTGATTAAGATTTTCAATTTTGGCTTACTTTCATTTTTTTCTGTTTTGTTTGCAAGGTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGGGTAATTTCTCTCTTTGTCTTTCTCAAATTACTATGTGGAAGATACTTTATATGCCTTGACTATGTTAGCCTCACACTTGTAATACTGGCTTAACGTCAGAAGTATGCTCTCATTTCTATCTACTGGCATTATGAGTGATCCTAAAACTGGGATTCCTTTCACATGTGCTATGACTCTCCGTTATATTCTCCAAAAGTTATATAGTCTGACAAAAAGAGAAAAGGATGAATACGATTATGAAGAAATAAGATTACCACTTACCAAGAGATGAAACGGAAAAAGAAAATAAGGAACAAACTTAAGCAGTGTGTGGACCACTTATTTCTTTTGTTGGGGTATACTGGAAGTGGAAGGTTAAATGAGAAGTTTGAATGCTATAGAAATTGTAGATTTAATTCTTGCAGCTTGGGTGAATTAGACAAAAGATGTTTCTAGTAAGTCCTCTCATTTTTGGGATGGATAATGTGCAGTAGCAATAGTTTGTTAAGTGCTTTGTTCTTTTTTCAATTGTATGGTTGATGATATCCCTTCTGTCTAAAATTCTTGGGCATAATATGCTTTTCAAGGAGTTGAGTTGAGCAATATTGTTGTTGGTACAATAGTCAGTTTCATGGGTTACAGAGTAAAGGAAAGACTATTGGCACATAGCAAAAGTACCCTTAGAACTTATCGTTTTTAACATGTTTTGTCACTTCTATGGATATAAAAGCATGTCATAAGAGTAAAATTTGATGTAAAAGTTGAAGAGTTCGCAAATATACATTGGTGTTATTCTTTCTTTTACAAACTAACAAAAGATGTGTCCATATAAAATAGAATAGTGTGAGTAATAACATTGGTTTGGGCAGCTATAAATTTTGAGAAGAATAGATGATTTGTACTTCTAGAGTATGTGGATTTGATATTGAATAACTATATTTTGTTCCACCCTGTGGGTGCTTACCCGCCTTATCTTGGAAATTACTTCATTTCACTTAGATATCCCTTTCTATTGATATTTACCTTATGCAAGAGCAGTCCTAAACATATATTGTAACTTGGCTTTTCTATGACCATATATTAGAGGAACACTAAAAGGATGGAAAATTAGACTAGTTTAAGAGATGGATTGCATTTGGATAATTAATTCTAAGACCAACTTCTTGTAGCTGCCCTTTTTATTTTTGGCACTATAGCTTTTAGCCCCTTTTCATGTCAAGTTTGATGTTCCTGGTCTGCCAGTTTAACCCAATCATCAAAATTGTCATTCCTATGAGTCTGTGAGGAAGCATTTCTCACAAATTATACTACAATACCCTTTATTCTTAATAGAGCCAAAGTCCTATCAGACTGCTACATGAGTTCTTGGCTTTATGTATTTATGTTACTTTTCCTTCTAGTGCAGACTGTGACTGATATTCCAGAAAGCTAGGGCTTAAGTCCTTGTGTACATGTGTTCAATCTTGTTCAATCTTCTTATTCTGATCGTGGATTTGTATCCAAATATTGTGCATTTTAATTCCTCTAAATTTGAATTGGAGTAACTTCTTAGCTGGTAGATAAAAGCCTTCCATGCAAGCAAATAAGCAAATCCTGCACTGGTACTCTTGCGCACTAATCTTGTTCTGCTTGCAGAGGAATACTCAAGTCATCTGTGTAACTGTGTAGTGTCAATCATACTCTTTTTGTGTTACAGTTAAAATACCCTCTTCTGCAGTACCCAATAGAGGCACAATATCAGCACATCACTTCATTACTTCATAATTTCTCAAATTTTTCTCTTACGATATCAGCCTCTGACTCTGTTTATTTGTTCGGTAAATCAGGCCATGCTTGCTTTGATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAACATATCGTGGCGATCTCCATAGAAAAAGGGGGAAAGAGAGAAAGGATAGAGCAACTTAAGTAATTGGTTTTTGTTTGTGAGATGTATCCTTTTCTCAATATGTATATCAAATATTGACTTGGGTGGTTCTTATG</genome_strand>
        <mrna_strand>CCGCCTTCTCCTCCACAGTCTCACCCGGTGTTCTGTTTTCCTCAACCCGTTCCTACTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGCTGATGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTT............................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTCCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGCTTGCTCTAATCGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTCAAGCTGCAATATCTAAACTTATCGAGGCGATCTCCATAGAAAAGGGGGGAACCAGAGAAAGGATGGAGCAACTTTTGTAATAGGTTTTTGTTTGTGAGATGTGTCCTTTTCTCACTATGTATATCACATATTGACTTGGGTGGTTCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477721" ref_strand="+" ref_description="SGN-E477721 [cSTD-1-F3]">
      <seq>ccgatctgattctgacaatcggcgtcagaaacattacgacttcaactcaatcccgaaaccctaaactgttactcgatctctatcaggggaagtatgagcaaagaagacgggaagaatagggcctcttcggccaccggcgaacccttgccggcaaactattactacggtacatttcaaggagtagccaatcatccgcctcctcctccacagtctcatcaagtgttcggttttcctcagcccgttcctccgcctggtgctgccggcgctcctcctcaatactatcctcatggttatcaaactgttcacggttatgctgttgctgaaggtagacctatgagggagcaccgtcttccttgctgtggtgtggggatcggctggttcttgttcatctctggtttctttcttggtaccataccttggtacgttggagcttttcttcttctgtgtgttcggattgattatagagagaaggctggccttatagcatgcacattaggggccatgcttgctttgattgctgtgactnttggtgtgacaaaggcaactcattcctggtgaggctatccaggctgcaatatgtgaacttatcgtggcaatctccatagaaaagggggaaagagagaaaggatagagcaccttaagtaattggttttttgtttgaaagatgtatccttttcttcatatgtatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="21180" stop="16826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20909" g_stop="20599" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20598" i_stop="19709" i_length="890">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19708" g_stop="19633" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="383" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19632" i_stop="19237" i_length="396">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.772" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19236" g_stop="19122" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="498" r_length="115" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19121" i_stop="17317" i_length="1805">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17316" g_stop="17125" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="690" r_length="192" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E477721" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20909" e_stop="20599"/>
          <exon e_start="19708" e_stop="19633"/>
          <exon e_start="19236" e_stop="19122"/>
          <exon e_start="17316" e_stop="17125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATCTGATTCTGACAATCGGCGTCAAAAGCGATACGACTATTCGAATCAATCGCGGTAAGGCTAAACTGTTACTAGATCTCTGTCGGGGGAAAGTATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACGGTGTGTTTTCCCACAATTATATATATCTACAGGCGCTTCTATGATTACTTTTTTCTACGCTTCTTGATGAATTCTTTTTGTTTCCGTCAATTAAGTTAAAATTTGGGAATTATTAATTCAACTTTTCATCCTGTCTTTTTTAAAATAACAACAACATAGCTAGCTTAATCCCATGACTGAGATCTGGGGAGGCTATAGTGTATGCAAACCTTATTGGGAAGTAGAGAGGCTATATTAAGTATATATAGCAGGATTCGTTAAGGTACAGCTTTTGCGTGCTAATAAGTTAATTCGGGACAGAATGCAGGGTATATAATCTTTTTGTTTATAGTGTATGATCGGATGGTTGTATGGTCTTGTCATTTAGGAATTACATTTAGGGGATTGATAATATGGAGAACGCGTAGGGAAGAAATTATAGCTGTTAAATTAGAACTCATCAAAATGCCATCTGAATTTTGTATAATGTGGTGAGCTCTATCCAAAGATTTAAACATAATGAAAGAAGCATGTAAGATATATGTCTTGTGATGATATCCATTTCTACTAATCATTAAAAGCTGCACATCCCATATAGCAAAATACTCCAGAAAAATTCAAGCTGTAGCATGAATCAACTCCTGTGTGAAATCTAGATTTTTTGAATGACTTCATAGATTTTCTTCAGTTTGAACAGGGGTTATAACTATGTAATTGGCAACTTTTGTTGCTGGGAAGTGACCTTTTTTGGTACAGTCCAGCGCGTTGTGCTTGGCTGCTTATGTTAATGTTAATAAAACAAAATGTTTTCTGCTCTAATTGGTAGTTTGAAAATATTTGATTGTTCAAAACATTATTTTAATGTCAGATGATATACACCATGTTCATTATGTTTCTTCACCATGCCTTAGGTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTTGTATGTTTCTATTCTTGTGCCTTTTCTTGAGCCCTTATTTTTAAATTTTCTTTATATATTGTGGTCAGATTGGTAAATATTTTGCTTTATGCAAAAAATATGATATAGGTAATCATGCTCTGGTTTCATTATTATTTTAGAGCTTTTTCATTGTCTTTAGAGTATTATTTATATTAAAATAAAGACTGCTAAGTTGGATATTGGGGAAACAATGTGAAGGCACACGGGAATAACAACTCAGCGGTCTCAAAAAGTGTGATGTCATAGTTGCTACTGGATTTACCTCTTTTTGGGGTTCAGTGACTAGATTTTCATAAACTCAATATTACTTCTGTAAAGAGTGATTAAGATTTTCAATTTTGGCTTACTTTCATTTTTTTCTGTTTTGTTTGCAAGGTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGGGTAATTTCTCTCTTTGTCTTTCTCAAATTACTATGTGGAAGATACTTTATATGCCTTGACTATGTTAGCCTCACACTTGTAATACTGGCTTAACGTCAGAAGTATGCTCTCATTTCTATCTACTGGCATTATGAGTGATCCTAAAACTGGGATTCCTTTCACATGTGCTATGACTCTCCGTTATATTCTCCAAAAGTTATATAGTCTGACAAAAAGAGAAAAGGATGAATACGATTATGAAGAAATAAGATTACCACTTACCAAGAGATGAAACGGAAAAAGAAAATAAGGAACAAACTTAAGCAGTGTGTGGACCACTTATTTCTTTTGTTGGGGTATACTGGAAGTGGAAGGTTAAATGAGAAGTTTGAATGCTATAGAAATTGTAGATTTAATTCTTGCAGCTTGGGTGAATTAGACAAAAGATGTTTCTAGTAAGTCCTCTCATTTTTGGGATGGATAATGTGCAGTAGCAATAGTTTGTTAAGTGCTTTGTTCTTTTTTCAATTGTATGGTTGATGATATCCCTTCTGTCTAAAATTCTTGGGCATAATATGCTTTTCAAGGAGTTGAGTTGAGCAATATTGTTGTTGGTACAATAGTCAGTTTCATGGGTTACAGAGTAAAGGAAAGACTATTGGCACATAGCAAAAGTACCCTTAGAACTTATCGTTTTTAACATGTTTTGTCACTTCTATGGATATAAAAGCATGTCATAAGAGTAAAATTTGATGTAAAAGTTGAAGAGTTCGCAAATATACATTGGTGTTATTCTTTCTTTTACAAACTAACAAAAGATGTGTCCATATAAAATAGAATAGTGTGAGTAATAACATTGGTTTGGGCAGCTATAAATTTTGAGAAGAATAGATGATTTGTACTTCTAGAGTATGTGGATTTGATATTGAATAACTATATTTTGTTCCACCCTGTGGGTGCTTACCCGCCTTATCTTGGAAATTACTTCATTTCACTTAGATATCCCTTTCTATTGATATTTACCTTATGCAAGAGCAGTCCTAAACATATATTGTAACTTGGCTTTTCTATGACCATATATTAGAGGAACACTAAAAGGATGGAAAATTAGACTAGTTTAAGAGATGGATTGCATTTGGATAATTAATTCTAAGACCAACTTCTTGTAGCTGCCCTTTTTATTTTTGGCACTATAGCTTTTAGCCCCTTTTCATGTCAAGTTTGATGTTCCTGGTCTGCCAGTTTAACCCAATCATCAAAATTGTCATTCCTATGAGTCTGTGAGGAAGCATTTCTCACAAATTATACTACAATACCCTTTATTCTTAATAGAGCCAAAGTCCTATCAGACTGCTACATGAGTTCTTGGCTTTATGTATTTATGTTACTTTTCCTTCTAGTGCAGACTGTGACTGATATTCCAGAAAGCTAGGGCTTAAGTCCTTGTGTACATGTGTTCAATCTTGTTCAATCTTCTTATTCTGATCGTGGATTTGTATCCAAATATTGTGCATTTTAATTCCTCTAAATTTGAATTGGAGTAACTTCTTAGCTGGTAGATAAAAGCCTTCCATGCAAGCAAATAAGCAAATCCTGCACTGGTACTCTTGCGCACTAATCTTGTTCTGCTTGCAGAGGAATACTCAAGTCATCTGTGTAACTGTGTAGTGTCAATCATACTCTTTTTGTGTTACAGTTAAAATACCCTCTTCTGCAGTACCCAATAGAGGCACAATATCAGCACATCACTTCATTACTTCATAATTTCTCAAATTTTTCTCTTACGATATCAGCCTCTGACTCTGTTTATTTGTTCGGTAAATCAGGCCATGCTTGCTTTGATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAACATATCGTGGCGATCTCCATAGAAAAAGGGGGAAAGAGAGAAAGGATAGAGCAACTTAAGTAATTGG-TTTTTGTTTGTGAGATGTATCCTTTTCTCAATATGTATAT</genome_strand>
        <mrna_strand>CCGATCTGATTCTGACAATCGGCGTCAGAAACATTACGAC--TTCAACTCAATC-CCGAAACCCTAAACTGTTACTCGATCTCTATCAGGGG-AAGTATGAGCAAAGAAGACGGGAAGAATAGGGCCTCTTCGGCCACCGGCGAACCCTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCCAATCATCCGCCTCCTCCTCCACAGTCTCATCAAGTGTTCGGTTTTCCTCAGCCCGTTCCTCCGCCTGGTGCTGCCGGCGCTCCTCCTCAATACTATCCTCATGGTTATCAAACTGTTCACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGTTCTT............................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTACGTTGGAGCTTTTCTTCTTCTGTGTGTTCGGATTGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGCTTGCTTTGATTGCTGTGACTNTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATCCAGGCTGCAATATGTGAACTTATCGTGGCAATCTCCATAG-AAAAGGGGGAAAGAGAGAAAGGATAGAGCACCTTAAGTAATTGGTTTTTTGTTTGAAAGATGTATCCTTTTCTTCATATGTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E697680" ref_strand="+" ref_description="SGN-E697680 [FA03DB10]">
      <seq>cggcgaaatcgccgatcacgtagccgcgccgatctgattctgacaatcggcgtcaaaagcgatacgactattcgaatcaatcgcggtaaggctaaactgttactagatctctgtcgggggaaagtatgagcaaagaagaggggaagaacatggcctcttcggccaccggcgaacctttgccggcaaactattactacggtacatttcaaggagtagcaaatcatccgcctcctcctccacagtctcacccggtgttcggttttcctcagcccgttcctcctcctggtgtcgccggcgctcctcctcaatactatcctcagggttatcaaactgttcacggttatgctgttgctgaaggtagacctatgagggagcaccgtcttccttgctgtggtgtggggatcggctgggtcttgttcatctctggtttctttcttggtaccataccttggtatgttggagcttttcttcttttgtgtgtacggatcgattatagagagaaggctggccttatagcatgcacattaggggccatgcttgctttgattgctgtgacttttggtgtgacaaaggcaactcattcctggtgaggctatttaggctgcaatatctaaacatatcgtggcgatctccatagaaaaagggggaaagagagacaggatagagcaacttaagtaattggtttttgtttgtgagatgtatccttttctcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="21237" stop="16832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20937" g_stop="20599" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20598" i_stop="19709" i_length="890">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19708" g_stop="19633" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="415" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19632" i_stop="19237" i_length="396">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19236" g_stop="19122" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="530" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19121" i_stop="17317" i_length="1805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17316" g_stop="17132" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="715" r_length="185" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E697680" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20937" e_stop="20599"/>
          <exon e_start="19708" e_stop="19633"/>
          <exon e_start="19236" e_stop="19122"/>
          <exon e_start="17316" e_stop="17132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCGAAATCGCCGATCACGTAGCCGCGCCGATCTGATTCTGACAATCGGCGTCAAAAGCGATACGACTATTCGAATCAATCGCGGTAAGGCTAAACTGTTACTAGATCTCTGTCGGGGGAAAGTATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACGGTGTGTTTTCCCACAATTATATATATCTACAGGCGCTTCTATGATTACTTTTTTCTACGCTTCTTGATGAATTCTTTTTGTTTCCGTCAATTAAGTTAAAATTTGGGAATTATTAATTCAACTTTTCATCCTGTCTTTTTTAAAATAACAACAACATAGCTAGCTTAATCCCATGACTGAGATCTGGGGAGGCTATAGTGTATGCAAACCTTATTGGGAAGTAGAGAGGCTATATTAAGTATATATAGCAGGATTCGTTAAGGTACAGCTTTTGCGTGCTAATAAGTTAATTCGGGACAGAATGCAGGGTATATAATCTTTTTGTTTATAGTGTATGATCGGATGGTTGTATGGTCTTGTCATTTAGGAATTACATTTAGGGGATTGATAATATGGAGAACGCGTAGGGAAGAAATTATAGCTGTTAAATTAGAACTCATCAAAATGCCATCTGAATTTTGTATAATGTGGTGAGCTCTATCCAAAGATTTAAACATAATGAAAGAAGCATGTAAGATATATGTCTTGTGATGATATCCATTTCTACTAATCATTAAAAGCTGCACATCCCATATAGCAAAATACTCCAGAAAAATTCAAGCTGTAGCATGAATCAACTCCTGTGTGAAATCTAGATTTTTTGAATGACTTCATAGATTTTCTTCAGTTTGAACAGGGGTTATAACTATGTAATTGGCAACTTTTGTTGCTGGGAAGTGACCTTTTTTGGTACAGTCCAGCGCGTTGTGCTTGGCTGCTTATGTTAATGTTAATAAAACAAAATGTTTTCTGCTCTAATTGGTAGTTTGAAAATATTTGATTGTTCAAAACATTATTTTAATGTCAGATGATATACACCATGTTCATTATGTTTCTTCACCATGCCTTAGGTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTTGTATGTTTCTATTCTTGTGCCTTTTCTTGAGCCCTTATTTTTAAATTTTCTTTATATATTGTGGTCAGATTGGTAAATATTTTGCTTTATGCAAAAAATATGATATAGGTAATCATGCTCTGGTTTCATTATTATTTTAGAGCTTTTTCATTGTCTTTAGAGTATTATTTATATTAAAATAAAGACTGCTAAGTTGGATATTGGGGAAACAATGTGAAGGCACACGGGAATAACAACTCAGCGGTCTCAAAAAGTGTGATGTCATAGTTGCTACTGGATTTACCTCTTTTTGGGGTTCAGTGACTAGATTTTCATAAACTCAATATTACTTCTGTAAAGAGTGATTAAGATTTTCAATTTTGGCTTACTTTCATTTTTTTCTGTTTTGTTTGCAAGGTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGGGTAATTTCTCTCTTTGTCTTTCTCAAATTACTATGTGGAAGATACTTTATATGCCTTGACTATGTTAGCCTCACACTTGTAATACTGGCTTAACGTCAGAAGTATGCTCTCATTTCTATCTACTGGCATTATGAGTGATCCTAAAACTGGGATTCCTTTCACATGTGCTATGACTCTCCGTTATATTCTCCAAAAGTTATATAGTCTGACAAAAAGAGAAAAGGATGAATACGATTATGAAGAAATAAGATTACCACTTACCAAGAGATGAAACGGAAAAAGAAAATAAGGAACAAACTTAAGCAGTGTGTGGACCACTTATTTCTTTTGTTGGGGTATACTGGAAGTGGAAGGTTAAATGAGAAGTTTGAATGCTATAGAAATTGTAGATTTAATTCTTGCAGCTTGGGTGAATTAGACAAAAGATGTTTCTAGTAAGTCCTCTCATTTTTGGGATGGATAATGTGCAGTAGCAATAGTTTGTTAAGTGCTTTGTTCTTTTTTCAATTGTATGGTTGATGATATCCCTTCTGTCTAAAATTCTTGGGCATAATATGCTTTTCAAGGAGTTGAGTTGAGCAATATTGTTGTTGGTACAATAGTCAGTTTCATGGGTTACAGAGTAAAGGAAAGACTATTGGCACATAGCAAAAGTACCCTTAGAACTTATCGTTTTTAACATGTTTTGTCACTTCTATGGATATAAAAGCATGTCATAAGAGTAAAATTTGATGTAAAAGTTGAAGAGTTCGCAAATATACATTGGTGTTATTCTTTCTTTTACAAACTAACAAAAGATGTGTCCATATAAAATAGAATAGTGTGAGTAATAACATTGGTTTGGGCAGCTATAAATTTTGAGAAGAATAGATGATTTGTACTTCTAGAGTATGTGGATTTGATATTGAATAACTATATTTTGTTCCACCCTGTGGGTGCTTACCCGCCTTATCTTGGAAATTACTTCATTTCACTTAGATATCCCTTTCTATTGATATTTACCTTATGCAAGAGCAGTCCTAAACATATATTGTAACTTGGCTTTTCTATGACCATATATTAGAGGAACACTAAAAGGATGGAAAATTAGACTAGTTTAAGAGATGGATTGCATTTGGATAATTAATTCTAAGACCAACTTCTTGTAGCTGCCCTTTTTATTTTTGGCACTATAGCTTTTAGCCCCTTTTCATGTCAAGTTTGATGTTCCTGGTCTGCCAGTTTAACCCAATCATCAAAATTGTCATTCCTATGAGTCTGTGAGGAAGCATTTCTCACAAATTATACTACAATACCCTTTATTCTTAATAGAGCCAAAGTCCTATCAGACTGCTACATGAGTTCTTGGCTTTATGTATTTATGTTACTTTTCCTTCTAGTGCAGACTGTGACTGATATTCCAGAAAGCTAGGGCTTAAGTCCTTGTGTACATGTGTTCAATCTTGTTCAATCTTCTTATTCTGATCGTGGATTTGTATCCAAATATTGTGCATTTTAATTCCTCTAAATTTGAATTGGAGTAACTTCTTAGCTGGTAGATAAAAGCCTTCCATGCAAGCAAATAAGCAAATCCTGCACTGGTACTCTTGCGCACTAATCTTGTTCTGCTTGCAGAGGAATACTCAAGTCATCTGTGTAACTGTGTAGTGTCAATCATACTCTTTTTGTGTTACAGTTAAAATACCCTCTTCTGCAGTACCCAATAGAGGCACAATATCAGCACATCACTTCATTACTTCATAATTTCTCAAATTTTTCTCTTACGATATCAGCCTCTGACTCTGTTTATTTGTTCGGTAAATCAGGCCATGCTTGCTTTGATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAACATATCGTGGCGATCTCCATAGAAAAAGGGGGAAAGAGAGAAAGGATAGAGCAACTTAAGTAATTGGTTTTTGTTTGTGAGATGTATCCTTTTCTCAATA</genome_strand>
        <mrna_strand>CGGCGAAATCGCCGATCACGTAGCCGCGCCGATCTGATTCTGACAATCGGCGTCAAAAGCGATACGACTATTCGAATCAATCGCGGTAAGGCTAAACTGTTACTAGATCTCTGTCGGGGGAAAGTATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTT............................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGCTTGCTTTGATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAACATATCGTGGCGATCTCCATAGAAAAAGGGGGAAAGAGAGACAGGATAGAGCAACTTAAGTAATTGGTTTTTGTTTGTGAGATGTATCCTTTTCTCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299227" ref_strand="+" ref_description="SGN-E299227 [cLET-43-K23]">
      <seq>gccgatcacgtagccgcgccgatctgattctgacaatcggcgtcaaaagcgatacgactattcgaatcaatcgcggtaaggctaaactgttactagatctctgtcgggggaaagtatgagcaaagaagaggggaagaacatggcctcttcggccaccggcgaacctttgccggcaaactattactacggtacatttcaaggagtagcaaatcatccgcctcctcctccacagtctcacccggtgttcggctttcctcagcccgttcctcctcctggtgtcgccggcgctcctcctcaatactatcctcagggttatcaaactgttcacggttatgctgttgctgaaggtagacctatgagggagcaccgtcttccttgctgtggtgtggggatcggctgggtcttgttcatctctggtttctttcttggtaccataccttggtatgttggagcttttcttcttttgtgtgtacggatcgattatagagagaaggctggccttatagcatgcacattaggggccatgcttgctttaattgctgtgacttttggtgtgacaaaggcaactcattcctggtgaggctatttaagctgcaatatctaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="21227" stop="16931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20927" g_stop="20599" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20598" i_stop="19709" i_length="890">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19708" g_stop="19633" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="405" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19632" i_stop="19237" i_length="396">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19236" g_stop="19122" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="520" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19121" i_stop="17317" i_length="1805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17316" g_stop="17231" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="606" r_length="86" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E299227" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20927" e_stop="20599"/>
          <exon e_start="19708" e_stop="19633"/>
          <exon e_start="19236" e_stop="19122"/>
          <exon e_start="17316" e_stop="17231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGATCACGTAGCCGCGCCGATCTGATTCTGACAATCGGCGTCAAAAGCGATACGACTATTCGAATCAATCGCGGTAAGGCTAAACTGTTACTAGATCTCTGTCGGGGGAAAGTATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACGGTGTGTTTTCCCACAATTATATATATCTACAGGCGCTTCTATGATTACTTTTTTCTACGCTTCTTGATGAATTCTTTTTGTTTCCGTCAATTAAGTTAAAATTTGGGAATTATTAATTCAACTTTTCATCCTGTCTTTTTTAAAATAACAACAACATAGCTAGCTTAATCCCATGACTGAGATCTGGGGAGGCTATAGTGTATGCAAACCTTATTGGGAAGTAGAGAGGCTATATTAAGTATATATAGCAGGATTCGTTAAGGTACAGCTTTTGCGTGCTAATAAGTTAATTCGGGACAGAATGCAGGGTATATAATCTTTTTGTTTATAGTGTATGATCGGATGGTTGTATGGTCTTGTCATTTAGGAATTACATTTAGGGGATTGATAATATGGAGAACGCGTAGGGAAGAAATTATAGCTGTTAAATTAGAACTCATCAAAATGCCATCTGAATTTTGTATAATGTGGTGAGCTCTATCCAAAGATTTAAACATAATGAAAGAAGCATGTAAGATATATGTCTTGTGATGATATCCATTTCTACTAATCATTAAAAGCTGCACATCCCATATAGCAAAATACTCCAGAAAAATTCAAGCTGTAGCATGAATCAACTCCTGTGTGAAATCTAGATTTTTTGAATGACTTCATAGATTTTCTTCAGTTTGAACAGGGGTTATAACTATGTAATTGGCAACTTTTGTTGCTGGGAAGTGACCTTTTTTGGTACAGTCCAGCGCGTTGTGCTTGGCTGCTTATGTTAATGTTAATAAAACAAAATGTTTTCTGCTCTAATTGGTAGTTTGAAAATATTTGATTGTTCAAAACATTATTTTAATGTCAGATGATATACACCATGTTCATTATGTTTCTTCACCATGCCTTAGGTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTTGTATGTTTCTATTCTTGTGCCTTTTCTTGAGCCCTTATTTTTAAATTTTCTTTATATATTGTGGTCAGATTGGTAAATATTTTGCTTTATGCAAAAAATATGATATAGGTAATCATGCTCTGGTTTCATTATTATTTTAGAGCTTTTTCATTGTCTTTAGAGTATTATTTATATTAAAATAAAGACTGCTAAGTTGGATATTGGGGAAACAATGTGAAGGCACACGGGAATAACAACTCAGCGGTCTCAAAAAGTGTGATGTCATAGTTGCTACTGGATTTACCTCTTTTTGGGGTTCAGTGACTAGATTTTCATAAACTCAATATTACTTCTGTAAAGAGTGATTAAGATTTTCAATTTTGGCTTACTTTCATTTTTTTCTGTTTTGTTTGCAAGGTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGGGTAATTTCTCTCTTTGTCTTTCTCAAATTACTATGTGGAAGATACTTTATATGCCTTGACTATGTTAGCCTCACACTTGTAATACTGGCTTAACGTCAGAAGTATGCTCTCATTTCTATCTACTGGCATTATGAGTGATCCTAAAACTGGGATTCCTTTCACATGTGCTATGACTCTCCGTTATATTCTCCAAAAGTTATATAGTCTGACAAAAAGAGAAAAGGATGAATACGATTATGAAGAAATAAGATTACCACTTACCAAGAGATGAAACGGAAAAAGAAAATAAGGAACAAACTTAAGCAGTGTGTGGACCACTTATTTCTTTTGTTGGGGTATACTGGAAGTGGAAGGTTAAATGAGAAGTTTGAATGCTATAGAAATTGTAGATTTAATTCTTGCAGCTTGGGTGAATTAGACAAAAGATGTTTCTAGTAAGTCCTCTCATTTTTGGGATGGATAATGTGCAGTAGCAATAGTTTGTTAAGTGCTTTGTTCTTTTTTCAATTGTATGGTTGATGATATCCCTTCTGTCTAAAATTCTTGGGCATAATATGCTTTTCAAGGAGTTGAGTTGAGCAATATTGTTGTTGGTACAATAGTCAGTTTCATGGGTTACAGAGTAAAGGAAAGACTATTGGCACATAGCAAAAGTACCCTTAGAACTTATCGTTTTTAACATGTTTTGTCACTTCTATGGATATAAAAGCATGTCATAAGAGTAAAATTTGATGTAAAAGTTGAAGAGTTCGCAAATATACATTGGTGTTATTCTTTCTTTTACAAACTAACAAAAGATGTGTCCATATAAAATAGAATAGTGTGAGTAATAACATTGGTTTGGGCAGCTATAAATTTTGAGAAGAATAGATGATTTGTACTTCTAGAGTATGTGGATTTGATATTGAATAACTATATTTTGTTCCACCCTGTGGGTGCTTACCCGCCTTATCTTGGAAATTACTTCATTTCACTTAGATATCCCTTTCTATTGATATTTACCTTATGCAAGAGCAGTCCTAAACATATATTGTAACTTGGCTTTTCTATGACCATATATTAGAGGAACACTAAAAGGATGGAAAATTAGACTAGTTTAAGAGATGGATTGCATTTGGATAATTAATTCTAAGACCAACTTCTTGTAGCTGCCCTTTTTATTTTTGGCACTATAGCTTTTAGCCCCTTTTCATGTCAAGTTTGATGTTCCTGGTCTGCCAGTTTAACCCAATCATCAAAATTGTCATTCCTATGAGTCTGTGAGGAAGCATTTCTCACAAATTATACTACAATACCCTTTATTCTTAATAGAGCCAAAGTCCTATCAGACTGCTACATGAGTTCTTGGCTTTATGTATTTATGTTACTTTTCCTTCTAGTGCAGACTGTGACTGATATTCCAGAAAGCTAGGGCTTAAGTCCTTGTGTACATGTGTTCAATCTTGTTCAATCTTCTTATTCTGATCGTGGATTTGTATCCAAATATTGTGCATTTTAATTCCTCTAAATTTGAATTGGAGTAACTTCTTAGCTGGTAGATAAAAGCCTTCCATGCAAGCAAATAAGCAAATCCTGCACTGGTACTCTTGCGCACTAATCTTGTTCTGCTTGCAGAGGAATACTCAAGTCATCTGTGTAACTGTGTAGTGTCAATCATACTCTTTTTGTGTTACAGTTAAAATACCCTCTTCTGCAGTACCCAATAGAGGCACAATATCAGCACATCACTTCATTACTTCATAATTTCTCAAATTTTTCTCTTACGATATCAGCCTCTGACTCTGTTTATTTGTTCGGTAAATCAGGCCATGCTTGCTTTGATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAAC</genome_strand>
        <mrna_strand>GCCGATCACGTAGCCGCGCCGATCTGATTCTGACAATCGGCGTCAAAAGCGATACGACTATTCGAATCAATCGCGGTAAGGCTAAACTGTTACTAGATCTCTGTCGGGGGAAAGTATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGCTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTT............................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGCTTGCTTTAATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAAGCTGCAATATCTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E568048" ref_strand="+" ref_description="SGN-E568048 [12270]">
      <seq>agaaacattacgacttcaactcaatccgaaacctaaatgttactcgatctctatcaggaagtatgagcaaagaagacgggaagaatagggcctcttcggcaccggggaaaccttgcccggaaactattactacggtacatttcaaggagtagccaatcatactgctcctcctccacagtctcatcaagtgttcggttttcctcagcccgttcctccgcctggtgctgcggggctcctcctcaatactatcctcatggttatcaaactgttcacggttatgctgttgctgaaggtagacctatgagggagcaccgtcttccttgctgtggtgtggggatcggtggttcttgttcatctctggtttctttcttggtaccataccttggtacgttggagcttttctttcttctgtgtgttcggattgattatagagagaaggctggcttatagcatgcacattagggggcatgcttggtttgattgctgtgacttttggtgtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="21119" stop="16979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20840" g_stop="20599" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="274" r_length="237" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20598" i_stop="19709" i_length="890">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19708" g_stop="19633" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="349" r_length="75" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19632" i_stop="19237" i_length="396">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.772" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19236" g_stop="19122" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="464" r_length="115" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19121" i_stop="17317" i_length="1805">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17316" g_stop="17279" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="502" r_length="38" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E568048" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20840" e_stop="20599"/>
          <exon e_start="19708" e_stop="19633"/>
          <exon e_start="19236" e_stop="19122"/>
          <exon e_start="17316" e_stop="17279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTACTAGATCTCTGTCGGGGGAAAGTATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACGGTGTGTTTTCCCACAATTATATATATCTACAGGCGCTTCTATGATTACTTTTTTCTACGCTTCTTGATGAATTCTTTTTGTTTCCGTCAATTAAGTTAAAATTTGGGAATTATTAATTCAACTTTTCATCCTGTCTTTTTTAAAATAACAACAACATAGCTAGCTTAATCCCATGACTGAGATCTGGGGAGGCTATAGTGTATGCAAACCTTATTGGGAAGTAGAGAGGCTATATTAAGTATATATAGCAGGATTCGTTAAGGTACAGCTTTTGCGTGCTAATAAGTTAATTCGGGACAGAATGCAGGGTATATAATCTTTTTGTTTATAGTGTATGATCGGATGGTTGTATGGTCTTGTCATTTAGGAATTACATTTAGGGGATTGATAATATGGAGAACGCGTAGGGAAGAAATTATAGCTGTTAAATTAGAACTCATCAAAATGCCATCTGAATTTTGTATAATGTGGTGAGCTCTATCCAAAGATTTAAACATAATGAAAGAAGCATGTAAGATATATGTCTTGTGATGATATCCATTTCTACTAATCATTAAAAGCTGCACATCCCATATAGCAAAATACTCCAGAAAAATTCAAGCTGTAGCATGAATCAACTCCTGTGTGAAATCTAGATTTTTTGAATGACTTCATAGATTTTCTTCAGTTTGAACAGGGGTTATAACTATGTAATTGGCAACTTTTGTTGCTGGGAAGTGACCTTTTTTGGTACAGTCCAGCGCGTTGTGCTTGGCTGCTTATGTTAATGTTAATAAAACAAAATGTTTTCTGCTCTAATTGGTAGTTTGAAAATATTTGATTGTTCAAAACATTATTTTAATGTCAGATGATATACACCATGTTCATTATGTTTCTTCACCATGCCTTAGGTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTTGTATGTTTCTATTCTTGTGCCTTTTCTTGAGCCCTTATTTTTAAATTTTCTTTATATATTGTGGTCAGATTGGTAAATATTTTGCTTTATGCAAAAAATATGATATAGGTAATCATGCTCTGGTTTCATTATTATTTTAGAGCTTTTTCATTGTCTTTAGAGTATTATTTATATTAAAATAAAGACTGCTAAGTTGGATATTGGGGAAACAATGTGAAGGCACACGGGAATAACAACTCAGCGGTCTCAAAAAGTGTGATGTCATAGTTGCTACTGGATTTACCTCTTTTTGGGGTTCAGTGACTAGATTTTCATAAACTCAATATTACTTCTGTAAAGAGTGATTAAGATTTTCAATTTTGGCTTACTTTCATTTTTTTCTGTTTTGTTTGCAAGGTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTC-TTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGGGTAATTTCTCTCTTTGTCTTTCTCAAATTACTATGTGGAAGATACTTTATATGCCTTGACTATGTTAGCCTCACACTTGTAATACTGGCTTAACGTCAGAAGTATGCTCTCATTTCTATCTACTGGCATTATGAGTGATCCTAAAACTGGGATTCCTTTCACATGTGCTATGACTCTCCGTTATATTCTCCAAAAGTTATATAGTCTGACAAAAAGAGAAAAGGATGAATACGATTATGAAGAAATAAGATTACCACTTACCAAGAGATGAAACGGAAAAAGAAAATAAGGAACAAACTTAAGCAGTGTGTGGACCACTTATTTCTTTTGTTGGGGTATACTGGAAGTGGAAGGTTAAATGAGAAGTTTGAATGCTATAGAAATTGTAGATTTAATTCTTGCAGCTTGGGTGAATTAGACAAAAGATGTTTCTAGTAAGTCCTCTCATTTTTGGGATGGATAATGTGCAGTAGCAATAGTTTGTTAAGTGCTTTGTTCTTTTTTCAATTGTATGGTTGATGATATCCCTTCTGTCTAAAATTCTTGGGCATAATATGCTTTTCAAGGAGTTGAGTTGAGCAATATTGTTGTTGGTACAATAGTCAGTTTCATGGGTTACAGAGTAAAGGAAAGACTATTGGCACATAGCAAAAGTACCCTTAGAACTTATCGTTTTTAACATGTTTTGTCACTTCTATGGATATAAAAGCATGTCATAAGAGTAAAATTTGATGTAAAAGTTGAAGAGTTCGCAAATATACATTGGTGTTATTCTTTCTTTTACAAACTAACAAAAGATGTGTCCATATAAAATAGAATAGTGTGAGTAATAACATTGGTTTGGGCAGCTATAAATTTTGAGAAGAATAGATGATTTGTACTTCTAGAGTATGTGGATTTGATATTGAATAACTATATTTTGTTCCACCCTGTGGGTGCTTACCCGCCTTATCTTGGAAATTACTTCATTTCACTTAGATATCCCTTTCTATTGATATTTACCTTATGCAAGAGCAGTCCTAAACATATATTGTAACTTGGCTTTTCTATGACCATATATTAGAGGAACACTAAAAGGATGGAAAATTAGACTAGTTTAAGAGATGGATTGCATTTGGATAATTAATTCTAAGACCAACTTCTTGTAGCTGCCCTTTTTATTTTTGGCACTATAGCTTTTAGCCCCTTTTCATGTCAAGTTTGATGTTCCTGGTCTGCCAGTTTAACCCAATCATCAAAATTGTCATTCCTATGAGTCTGTGAGGAAGCATTTCTCACAAATTATACTACAATACCCTTTATTCTTAATAGAGCCAAAGTCCTATCAGACTGCTACATGAGTTCTTGGCTTTATGTATTTATGTTACTTTTCCTTCTAGTGCAGACTGTGACTGATATTCCAGAAAGCTAGGGCTTAAGTCCTTGTGTACATGTGTTCAATCTTGTTCAATCTTCTTATTCTGATCGTGGATTTGTATCCAAATATTGTGCATTTTAATTCCTCTAAATTTGAATTGGAGTAACTTCTTAGCTGGTAGATAAAAGCCTTCCATGCAAGCAAATAAGCAAATCCTGCACTGGTACTCTTGCGCACTAATCTTGTTCTGCTTGCAGAGGAATACTCAAGTCATCTGTGTAACTGTGTAGTGTCAATCATACTCTTTTTGTGTTACAGTTAAAATACCCTCTTCTGCAGTACCCAATAGAGGCACAATATCAGCACATCACTTCATTACTTCATAATTTCTCAAATTTTTCTCTTACGATATCAGCCTCTGACTCTGTTTATTTGTTCGGTAAATCAGGCCATGCTTGCTTTGATTGCTGTGACTTTTGGTGTGAC</genome_strand>
        <mrna_strand>TGTTACTCGATCTCTATCAG--G-AAGTATGAGCAAAGAAGACGGGAAGAATAGGGCCTCTTCGG-CACCGGGGAAACCTTGCCCGGAAACTATTACTACGGTACATTTCAAGGAGTAGCCAATCATACTGCTCCTCCTCCACAGTCTCATCAAGTGTTCGGTTTTCCTCAGCCCGTTCCTCCGCCTGGTG-CTGCGGGGCTCCTCCTCAATACTATCCTCATGGTTATCAAACTGTTCACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGG-TGGTTCTT............................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTACGTTGGAGCTTTTCTTTCTTCTGTGTGTTCGGATTGATTATAGAGAGAAGGCTGG-CTTATAGCATGCACATTAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGCTTGGTTTGATTGCTGTGACTTTTGGTGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330484" ref_strand="+" ref_description="SGN-E330484 [cTOD-4-F8]">
      <seq>gtagccgcgccgatctgattctgacaatcggcgtcaaaagcgatacgactattcgaatcaatcgcggtaaggctaaactgttactagatctctgtcgggggaaagtatgagcaaagaagaggggaagaacatggcctcttcggccaccggcgaacctttgccggcaaactattactacggtacatttcaaggagtagcaaatcatccgcctcctcctccacagtctcacccggtgttcggttttcctcagcccgttcctcctcctggtgtcgccggcgctcctcctcaatactatcctcagggttatcaaactgttcacggttatgctgttgctgaaggtagacctatgagggagcaccgtcttccttgctgtggtgtggggatcggctgggtcttgttcatctctggtttctttcttggtaccataccttggtatgttggagcttttcttcttttgtgtgtacggatcgattatagagagaaggctggccttatagcatgcacattaggggccatgcttgctttaattgctgtgacttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="21218" stop="16986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20918" g_stop="20599" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20598" i_stop="19709" i_length="890">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19708" g_stop="19633" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="396" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19632" i_stop="19237" i_length="396">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19236" g_stop="19122" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="511" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19121" i_stop="17317" i_length="1805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17316" g_stop="17286" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="542" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E330484" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20918" e_stop="20599"/>
          <exon e_start="19708" e_stop="19633"/>
          <exon e_start="19236" e_stop="19122"/>
          <exon e_start="17316" e_stop="17286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCCGCGCCGATCTGATTCTGACAATCGGCGTCAAAAGCGATACGACTATTCGAATCAATCGCGGTAAGGCTAAACTGTTACTAGATCTCTGTCGGGGGAAAGTATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACGGTGTGTTTTCCCACAATTATATATATCTACAGGCGCTTCTATGATTACTTTTTTCTACGCTTCTTGATGAATTCTTTTTGTTTCCGTCAATTAAGTTAAAATTTGGGAATTATTAATTCAACTTTTCATCCTGTCTTTTTTAAAATAACAACAACATAGCTAGCTTAATCCCATGACTGAGATCTGGGGAGGCTATAGTGTATGCAAACCTTATTGGGAAGTAGAGAGGCTATATTAAGTATATATAGCAGGATTCGTTAAGGTACAGCTTTTGCGTGCTAATAAGTTAATTCGGGACAGAATGCAGGGTATATAATCTTTTTGTTTATAGTGTATGATCGGATGGTTGTATGGTCTTGTCATTTAGGAATTACATTTAGGGGATTGATAATATGGAGAACGCGTAGGGAAGAAATTATAGCTGTTAAATTAGAACTCATCAAAATGCCATCTGAATTTTGTATAATGTGGTGAGCTCTATCCAAAGATTTAAACATAATGAAAGAAGCATGTAAGATATATGTCTTGTGATGATATCCATTTCTACTAATCATTAAAAGCTGCACATCCCATATAGCAAAATACTCCAGAAAAATTCAAGCTGTAGCATGAATCAACTCCTGTGTGAAATCTAGATTTTTTGAATGACTTCATAGATTTTCTTCAGTTTGAACAGGGGTTATAACTATGTAATTGGCAACTTTTGTTGCTGGGAAGTGACCTTTTTTGGTACAGTCCAGCGCGTTGTGCTTGGCTGCTTATGTTAATGTTAATAAAACAAAATGTTTTCTGCTCTAATTGGTAGTTTGAAAATATTTGATTGTTCAAAACATTATTTTAATGTCAGATGATATACACCATGTTCATTATGTTTCTTCACCATGCCTTAGGTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTTGTATGTTTCTATTCTTGTGCCTTTTCTTGAGCCCTTATTTTTAAATTTTCTTTATATATTGTGGTCAGATTGGTAAATATTTTGCTTTATGCAAAAAATATGATATAGGTAATCATGCTCTGGTTTCATTATTATTTTAGAGCTTTTTCATTGTCTTTAGAGTATTATTTATATTAAAATAAAGACTGCTAAGTTGGATATTGGGGAAACAATGTGAAGGCACACGGGAATAACAACTCAGCGGTCTCAAAAAGTGTGATGTCATAGTTGCTACTGGATTTACCTCTTTTTGGGGTTCAGTGACTAGATTTTCATAAACTCAATATTACTTCTGTAAAGAGTGATTAAGATTTTCAATTTTGGCTTACTTTCATTTTTTTCTGTTTTGTTTGCAAGGTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGGGTAATTTCTCTCTTTGTCTTTCTCAAATTACTATGTGGAAGATACTTTATATGCCTTGACTATGTTAGCCTCACACTTGTAATACTGGCTTAACGTCAGAAGTATGCTCTCATTTCTATCTACTGGCATTATGAGTGATCCTAAAACTGGGATTCCTTTCACATGTGCTATGACTCTCCGTTATATTCTCCAAAAGTTATATAGTCTGACAAAAAGAGAAAAGGATGAATACGATTATGAAGAAATAAGATTACCACTTACCAAGAGATGAAACGGAAAAAGAAAATAAGGAACAAACTTAAGCAGTGTGTGGACCACTTATTTCTTTTGTTGGGGTATACTGGAAGTGGAAGGTTAAATGAGAAGTTTGAATGCTATAGAAATTGTAGATTTAATTCTTGCAGCTTGGGTGAATTAGACAAAAGATGTTTCTAGTAAGTCCTCTCATTTTTGGGATGGATAATGTGCAGTAGCAATAGTTTGTTAAGTGCTTTGTTCTTTTTTCAATTGTATGGTTGATGATATCCCTTCTGTCTAAAATTCTTGGGCATAATATGCTTTTCAAGGAGTTGAGTTGAGCAATATTGTTGTTGGTACAATAGTCAGTTTCATGGGTTACAGAGTAAAGGAAAGACTATTGGCACATAGCAAAAGTACCCTTAGAACTTATCGTTTTTAACATGTTTTGTCACTTCTATGGATATAAAAGCATGTCATAAGAGTAAAATTTGATGTAAAAGTTGAAGAGTTCGCAAATATACATTGGTGTTATTCTTTCTTTTACAAACTAACAAAAGATGTGTCCATATAAAATAGAATAGTGTGAGTAATAACATTGGTTTGGGCAGCTATAAATTTTGAGAAGAATAGATGATTTGTACTTCTAGAGTATGTGGATTTGATATTGAATAACTATATTTTGTTCCACCCTGTGGGTGCTTACCCGCCTTATCTTGGAAATTACTTCATTTCACTTAGATATCCCTTTCTATTGATATTTACCTTATGCAAGAGCAGTCCTAAACATATATTGTAACTTGGCTTTTCTATGACCATATATTAGAGGAACACTAAAAGGATGGAAAATTAGACTAGTTTAAGAGATGGATTGCATTTGGATAATTAATTCTAAGACCAACTTCTTGTAGCTGCCCTTTTTATTTTTGGCACTATAGCTTTTAGCCCCTTTTCATGTCAAGTTTGATGTTCCTGGTCTGCCAGTTTAACCCAATCATCAAAATTGTCATTCCTATGAGTCTGTGAGGAAGCATTTCTCACAAATTATACTACAATACCCTTTATTCTTAATAGAGCCAAAGTCCTATCAGACTGCTACATGAGTTCTTGGCTTTATGTATTTATGTTACTTTTCCTTCTAGTGCAGACTGTGACTGATATTCCAGAAAGCTAGGGCTTAAGTCCTTGTGTACATGTGTTCAATCTTGTTCAATCTTCTTATTCTGATCGTGGATTTGTATCCAAATATTGTGCATTTTAATTCCTCTAAATTTGAATTGGAGTAACTTCTTAGCTGGTAGATAAAAGCCTTCCATGCAAGCAAATAAGCAAATCCTGCACTGGTACTCTTGCGCACTAATCTTGTTCTGCTTGCAGAGGAATACTCAAGTCATCTGTGTAACTGTGTAGTGTCAATCATACTCTTTTTGTGTTACAGTTAAAATACCCTCTTCTGCAGTACCCAATAGAGGCACAATATCAGCACATCACTTCATTACTTCATAATTTCTCAAATTTTTCTCTTACGATATCAGCCTCTGACTCTGTTTATTTGTTCGGTAAATCAGGCCATGCTTGCTTTGATTGCTGTGACTTTTG</genome_strand>
        <mrna_strand>GTAGCCGCGCCGATCTGATTCTGACAATCGGCGTCAAAAGCGATACGACTATTCGAATCAATCGCGGTAAGGCTAAACTGTTACTAGATCTCTGTCGGGGGAAAGTATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTT............................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGCTTGCTTTAATTGCTGTGACTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E416776" ref_strand="+" ref_description="SGN-E416776 [STM-23-J13]">
      <seq>gcgaaatcgccgatcacgtagccgcgccgatctgattctgacaatcggcgtcagaaacattacgacttcaactcaatcccgaaaccctaaactgttactcgatctctatcaggggaagtatgagcaaagaagacgggaagaatagggcctcttcggccaccggcgaacccttgccggcaaactattactacggtacatttcaaggagtagccaatcatccgcctcctcctccacagtctcatcaagtgttcggttttcctcagcccgttcctccgcctggtgctgccggcgctcctcctcaatactatcctcatggttatcaaactgttcacggttatgctgttgctgaaggtagacctatgagggagcaccgtcttccttgctgtggtgtggggatcggctggttcttgttcatctctggtttctttcttggtaccataccttggtacgttggagcttttcttcttctgtgtgttcggattgattatagagagaaggctggccttatagcatgcacattangggccatgcttgctttgattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="21235" stop="16996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20935" g_stop="20599" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20598" i_stop="19709" i_length="890">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19708" g_stop="19633" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="409" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19632" i_stop="19237" i_length="396">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.772" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19236" g_stop="19122" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="524" r_length="115" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19121" i_stop="17317" i_length="1805">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17316" g_stop="17296" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="545" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E416776" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20935" e_stop="20599"/>
          <exon e_start="19708" e_stop="19633"/>
          <exon e_start="19236" e_stop="19122"/>
          <exon e_start="17316" e_stop="17296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAATCGCCGATCACGTAGCCGCGCCGATCTGATTCTGACAATCGGCGTCAAAAGCGATACGACTATTCGAATCAATCGCGGTAAGGCTAAACTGTTACTAGATCTCTGTCGGGGGAAAGTATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACGGTGTGTTTTCCCACAATTATATATATCTACAGGCGCTTCTATGATTACTTTTTTCTACGCTTCTTGATGAATTCTTTTTGTTTCCGTCAATTAAGTTAAAATTTGGGAATTATTAATTCAACTTTTCATCCTGTCTTTTTTAAAATAACAACAACATAGCTAGCTTAATCCCATGACTGAGATCTGGGGAGGCTATAGTGTATGCAAACCTTATTGGGAAGTAGAGAGGCTATATTAAGTATATATAGCAGGATTCGTTAAGGTACAGCTTTTGCGTGCTAATAAGTTAATTCGGGACAGAATGCAGGGTATATAATCTTTTTGTTTATAGTGTATGATCGGATGGTTGTATGGTCTTGTCATTTAGGAATTACATTTAGGGGATTGATAATATGGAGAACGCGTAGGGAAGAAATTATAGCTGTTAAATTAGAACTCATCAAAATGCCATCTGAATTTTGTATAATGTGGTGAGCTCTATCCAAAGATTTAAACATAATGAAAGAAGCATGTAAGATATATGTCTTGTGATGATATCCATTTCTACTAATCATTAAAAGCTGCACATCCCATATAGCAAAATACTCCAGAAAAATTCAAGCTGTAGCATGAATCAACTCCTGTGTGAAATCTAGATTTTTTGAATGACTTCATAGATTTTCTTCAGTTTGAACAGGGGTTATAACTATGTAATTGGCAACTTTTGTTGCTGGGAAGTGACCTTTTTTGGTACAGTCCAGCGCGTTGTGCTTGGCTGCTTATGTTAATGTTAATAAAACAAAATGTTTTCTGCTCTAATTGGTAGTTTGAAAATATTTGATTGTTCAAAACATTATTTTAATGTCAGATGATATACACCATGTTCATTATGTTTCTTCACCATGCCTTAGGTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTTGTATGTTTCTATTCTTGTGCCTTTTCTTGAGCCCTTATTTTTAAATTTTCTTTATATATTGTGGTCAGATTGGTAAATATTTTGCTTTATGCAAAAAATATGATATAGGTAATCATGCTCTGGTTTCATTATTATTTTAGAGCTTTTTCATTGTCTTTAGAGTATTATTTATATTAAAATAAAGACTGCTAAGTTGGATATTGGGGAAACAATGTGAAGGCACACGGGAATAACAACTCAGCGGTCTCAAAAAGTGTGATGTCATAGTTGCTACTGGATTTACCTCTTTTTGGGGTTCAGTGACTAGATTTTCATAAACTCAATATTACTTCTGTAAAGAGTGATTAAGATTTTCAATTTTGGCTTACTTTCATTTTTTTCTGTTTTGTTTGCAAGGTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGGGTAATTTCTCTCTTTGTCTTTCTCAAATTACTATGTGGAAGATACTTTATATGCCTTGACTATGTTAGCCTCACACTTGTAATACTGGCTTAACGTCAGAAGTATGCTCTCATTTCTATCTACTGGCATTATGAGTGATCCTAAAACTGGGATTCCTTTCACATGTGCTATGACTCTCCGTTATATTCTCCAAAAGTTATATAGTCTGACAAAAAGAGAAAAGGATGAATACGATTATGAAGAAATAAGATTACCACTTACCAAGAGATGAAACGGAAAAAGAAAATAAGGAACAAACTTAAGCAGTGTGTGGACCACTTATTTCTTTTGTTGGGGTATACTGGAAGTGGAAGGTTAAATGAGAAGTTTGAATGCTATAGAAATTGTAGATTTAATTCTTGCAGCTTGGGTGAATTAGACAAAAGATGTTTCTAGTAAGTCCTCTCATTTTTGGGATGGATAATGTGCAGTAGCAATAGTTTGTTAAGTGCTTTGTTCTTTTTTCAATTGTATGGTTGATGATATCCCTTCTGTCTAAAATTCTTGGGCATAATATGCTTTTCAAGGAGTTGAGTTGAGCAATATTGTTGTTGGTACAATAGTCAGTTTCATGGGTTACAGAGTAAAGGAAAGACTATTGGCACATAGCAAAAGTACCCTTAGAACTTATCGTTTTTAACATGTTTTGTCACTTCTATGGATATAAAAGCATGTCATAAGAGTAAAATTTGATGTAAAAGTTGAAGAGTTCGCAAATATACATTGGTGTTATTCTTTCTTTTACAAACTAACAAAAGATGTGTCCATATAAAATAGAATAGTGTGAGTAATAACATTGGTTTGGGCAGCTATAAATTTTGAGAAGAATAGATGATTTGTACTTCTAGAGTATGTGGATTTGATATTGAATAACTATATTTTGTTCCACCCTGTGGGTGCTTACCCGCCTTATCTTGGAAATTACTTCATTTCACTTAGATATCCCTTTCTATTGATATTTACCTTATGCAAGAGCAGTCCTAAACATATATTGTAACTTGGCTTTTCTATGACCATATATTAGAGGAACACTAAAAGGATGGAAAATTAGACTAGTTTAAGAGATGGATTGCATTTGGATAATTAATTCTAAGACCAACTTCTTGTAGCTGCCCTTTTTATTTTTGGCACTATAGCTTTTAGCCCCTTTTCATGTCAAGTTTGATGTTCCTGGTCTGCCAGTTTAACCCAATCATCAAAATTGTCATTCCTATGAGTCTGTGAGGAAGCATTTCTCACAAATTATACTACAATACCCTTTATTCTTAATAGAGCCAAAGTCCTATCAGACTGCTACATGAGTTCTTGGCTTTATGTATTTATGTTACTTTTCCTTCTAGTGCAGACTGTGACTGATATTCCAGAAAGCTAGGGCTTAAGTCCTTGTGTACATGTGTTCAATCTTGTTCAATCTTCTTATTCTGATCGTGGATTTGTATCCAAATATTGTGCATTTTAATTCCTCTAAATTTGAATTGGAGTAACTTCTTAGCTGGTAGATAAAAGCCTTCCATGCAAGCAAATAAGCAAATCCTGCACTGGTACTCTTGCGCACTAATCTTGTTCTGCTTGCAGAGGAATACTCAAGTCATCTGTGTAACTGTGTAGTGTCAATCATACTCTTTTTGTGTTACAGTTAAAATACCCTCTTCTGCAGTACCCAATAGAGGCACAATATCAGCACATCACTTCATTACTTCATAATTTCTCAAATTTTTCTCTTACGATATCAGCCTCTGACTCTGTTTATTTGTTCGGTAAATCAGGCCATGCTTGCTTTGATTGCT</genome_strand>
        <mrna_strand>GCGAAATCGCCGATCACGTAGCCGCGCCGATCTGATTCTGACAATCGGCGTCAGAAACATTACGAC--TTCAACTCAATCCC-GAAACCCTAAACTGTTACTCGATCTCTATCAGGGG-AAGTATGAGCAAAGAAGACGGGAAGAATAGGGCCTCTTCGGCCACCGGCGAACCCTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCCAATCATCCGCCTCCTCCTCCACAGTCTCATCAAGTGTTCGGTTTTCCTCAGCCCGTTCCTCCGCCTGGTGCTGCCGGCGCTCCTCCTCAATACTATCCTCATGGTTATCAAACTGTTCACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGTTCTT............................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTACGTTGGAGCTTTTCTTCTTCTGTGTGTTCGGATTGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTANGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGCTTGCTTTGATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E593301" ref_strand="+" ref_description="SGN-E593301 [36528]">
      <seq>cgatcacgtagccgcgccgatctgattctgacaatcggcgtcagaaacattacgacttcaactcaatcccgaaaccctaaactgttactcgatctctatcaggggaagtatgagcaaagaagacgggaagaatagggcctcttcggccaccggcgaacccttgccggcaaactattactacggtacatttcaaggagtagccaatcatccgcctcctcctccacagtctcatcaagtgttcggttttcctcagcccgttcctccgcctggtgctgccggcgctcctcctcaatactatcctcatggttatcaaactgttcacggttatgctgttgctgaaggtagacctatgagggagcaccgtcttccttgctgtggtgtggggatcggctggttcttgttcatctctggtttctttcttggtaccataccttggtacgttggagcttttcttcttctgtgtgttcggattgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="21225" stop="18860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20925" g_stop="20599" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20598" i_stop="19709" i_length="890">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19708" g_stop="19633" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="399" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19632" i_stop="19237" i_length="396">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.772" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19236" g_stop="19160" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="476" r_length="77" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E593301" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E593301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20925" e_stop="20599"/>
          <exon e_start="19708" e_stop="19633"/>
          <exon e_start="19236" e_stop="19160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCACGTAGCCGCGCCGATCTGATTCTGACAATCGGCGTCAAAAGCGATACGACTATTCGAATCAATCGCGGTAAGGCTAAACTGTTACTAGATCTCTGTCGGGGGAAAGTATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACGGTGTGTTTTCCCACAATTATATATATCTACAGGCGCTTCTATGATTACTTTTTTCTACGCTTCTTGATGAATTCTTTTTGTTTCCGTCAATTAAGTTAAAATTTGGGAATTATTAATTCAACTTTTCATCCTGTCTTTTTTAAAATAACAACAACATAGCTAGCTTAATCCCATGACTGAGATCTGGGGAGGCTATAGTGTATGCAAACCTTATTGGGAAGTAGAGAGGCTATATTAAGTATATATAGCAGGATTCGTTAAGGTACAGCTTTTGCGTGCTAATAAGTTAATTCGGGACAGAATGCAGGGTATATAATCTTTTTGTTTATAGTGTATGATCGGATGGTTGTATGGTCTTGTCATTTAGGAATTACATTTAGGGGATTGATAATATGGAGAACGCGTAGGGAAGAAATTATAGCTGTTAAATTAGAACTCATCAAAATGCCATCTGAATTTTGTATAATGTGGTGAGCTCTATCCAAAGATTTAAACATAATGAAAGAAGCATGTAAGATATATGTCTTGTGATGATATCCATTTCTACTAATCATTAAAAGCTGCACATCCCATATAGCAAAATACTCCAGAAAAATTCAAGCTGTAGCATGAATCAACTCCTGTGTGAAATCTAGATTTTTTGAATGACTTCATAGATTTTCTTCAGTTTGAACAGGGGTTATAACTATGTAATTGGCAACTTTTGTTGCTGGGAAGTGACCTTTTTTGGTACAGTCCAGCGCGTTGTGCTTGGCTGCTTATGTTAATGTTAATAAAACAAAATGTTTTCTGCTCTAATTGGTAGTTTGAAAATATTTGATTGTTCAAAACATTATTTTAATGTCAGATGATATACACCATGTTCATTATGTTTCTTCACCATGCCTTAGGTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTTGTATGTTTCTATTCTTGTGCCTTTTCTTGAGCCCTTATTTTTAAATTTTCTTTATATATTGTGGTCAGATTGGTAAATATTTTGCTTTATGCAAAAAATATGATATAGGTAATCATGCTCTGGTTTCATTATTATTTTAGAGCTTTTTCATTGTCTTTAGAGTATTATTTATATTAAAATAAAGACTGCTAAGTTGGATATTGGGGAAACAATGTGAAGGCACACGGGAATAACAACTCAGCGGTCTCAAAAAGTGTGATGTCATAGTTGCTACTGGATTTACCTCTTTTTGGGGTTCAGTGACTAGATTTTCATAAACTCAATATTACTTCTGTAAAGAGTGATTAAGATTTTCAATTTTGGCTTACTTTCATTTTTTTCTGTTTTGTTTGCAAGGTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATT</genome_strand>
        <mrna_strand>CGATCACGTAGCCGCGCCGATCTGATTCTGACAATCGGCGTCAGAAACATTACGAC--TTCAACTCAATC-CCGAAACCCTAAACTGTTACTCGATCTCTATCAGGGG-AAGTATGAGCAAAGAAGACGGGAAGAATAGGGCCTCTTCGGCCACCGGCGAACCCTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCCAATCATCCGCCTCCTCCTCCACAGTCTCATCAAGTGTTCGGTTTTCCTCAGCCCGTTCCTCCGCCTGGTGCTGCCGGCGCTCCTCCTCAATACTATCCTCATGGTTATCAAACTGTTCACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGTTCTT............................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTACGTTGGAGCTTTTCTTCTTCTGTGTGTTCGGATTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439391" ref_strand="+" ref_description="SGN-E439391 [cSTA-11-P12]">
      <seq>gcgaaatcgccgatcacgtagccgcgccgatctgattctgacaatcggcgtcagaaacattacgacttcaactcaatcccgaaaccctaaactgttactcgatctctatcaggggaagtatgagcaaagaagacgggaagaatagggcctcttcggccaccggcgaacccttgccggcaaactattactacggtacatttcaaggagtagccaatcatccgcctcctcctccacagtctcatcaagtgttcggttttcctcagcccgttcctccgcctggtgctgccggcgctcctcctcaatactatcctcatggttatcaaactgttcacgggtatgctgttgctgaaggtagacctatgagggagcaccgtcttccttgctgtggtgtggggatcggctggttcttgttcatctctggtttctttcttggtaccataccttggtacgttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="21235" stop="18890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20935" g_stop="20599" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20598" i_stop="19709" i_length="890">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19708" g_stop="19633" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="409" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19632" i_stop="19237" i_length="396">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.772" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19236" g_stop="19190" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="456" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E439391" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20935" e_stop="20599"/>
          <exon e_start="19708" e_stop="19633"/>
          <exon e_start="19236" e_stop="19190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAATCGCCGATCACGTAGCCGCGCCGATCTGATTCTGACAATCGGCGTCAAAAGCGATACGACTATTCGAATCAATCGCGGTAAGGCTAAACTGTTACTAGATCTCTGTCGGGGGAAAGTATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACGGTGTGTTTTCCCACAATTATATATATCTACAGGCGCTTCTATGATTACTTTTTTCTACGCTTCTTGATGAATTCTTTTTGTTTCCGTCAATTAAGTTAAAATTTGGGAATTATTAATTCAACTTTTCATCCTGTCTTTTTTAAAATAACAACAACATAGCTAGCTTAATCCCATGACTGAGATCTGGGGAGGCTATAGTGTATGCAAACCTTATTGGGAAGTAGAGAGGCTATATTAAGTATATATAGCAGGATTCGTTAAGGTACAGCTTTTGCGTGCTAATAAGTTAATTCGGGACAGAATGCAGGGTATATAATCTTTTTGTTTATAGTGTATGATCGGATGGTTGTATGGTCTTGTCATTTAGGAATTACATTTAGGGGATTGATAATATGGAGAACGCGTAGGGAAGAAATTATAGCTGTTAAATTAGAACTCATCAAAATGCCATCTGAATTTTGTATAATGTGGTGAGCTCTATCCAAAGATTTAAACATAATGAAAGAAGCATGTAAGATATATGTCTTGTGATGATATCCATTTCTACTAATCATTAAAAGCTGCACATCCCATATAGCAAAATACTCCAGAAAAATTCAAGCTGTAGCATGAATCAACTCCTGTGTGAAATCTAGATTTTTTGAATGACTTCATAGATTTTCTTCAGTTTGAACAGGGGTTATAACTATGTAATTGGCAACTTTTGTTGCTGGGAAGTGACCTTTTTTGGTACAGTCCAGCGCGTTGTGCTTGGCTGCTTATGTTAATGTTAATAAAACAAAATGTTTTCTGCTCTAATTGGTAGTTTGAAAATATTTGATTGTTCAAAACATTATTTTAATGTCAGATGATATACACCATGTTCATTATGTTTCTTCACCATGCCTTAGGTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTTGTATGTTTCTATTCTTGTGCCTTTTCTTGAGCCCTTATTTTTAAATTTTCTTTATATATTGTGGTCAGATTGGTAAATATTTTGCTTTATGCAAAAAATATGATATAGGTAATCATGCTCTGGTTTCATTATTATTTTAGAGCTTTTTCATTGTCTTTAGAGTATTATTTATATTAAAATAAAGACTGCTAAGTTGGATATTGGGGAAACAATGTGAAGGCACACGGGAATAACAACTCAGCGGTCTCAAAAAGTGTGATGTCATAGTTGCTACTGGATTTACCTCTTTTTGGGGTTCAGTGACTAGATTTTCATAAACTCAATATTACTTCTGTAAAGAGTGATTAAGATTTTCAATTTTGGCTTACTTTCATTTTTTTCTGTTTTGTTTGCAAGGTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAG</genome_strand>
        <mrna_strand>GCGAAATCGCCGATCACGTAGCCGCGCCGATCTGATTCTGACAATCGGCGTCAGAAACATTACGAC--TTCAACTCAATCCC-GAAACCCTAAACTGTTACTCGATCTCTATCAGGGG-AAGTATGAGCAAAGAAGACGGGAAGAATAGGGCCTCTTCGGCCACCGGCGAACCCTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCCAATCATCCGCCTCCTCCTCCACAGTCTCATCAAGTGTTCGGTTTTCCTCAGCCCGTTCCTCCGCCTGGTGCTGCCGGCGCTCCTCCTCAATACTATCCTCATGGTTATCAAACTGTTCACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGTTCTT............................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTACGTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360065" ref_strand="+" ref_description="SGN-E360065 [cLPP-9-P22]">
      <seq>cgaagaccacgaaatcgccgatcacgtagcgcgccgatctgattctgacaatcggcgtcaaaagcgatacgacttcgaatcaatcgcggtaacgctaagctgttactagatctctgtcaggggaaagtatgagcaaagaagaggggaagaacatggcctcttcggccaccggcgaacctttgccggcaaactattactacggtacatttcaaggagtagcaaatcatccgcctcctcctccacagtctcacccggtgttcggttttcctcagcccgttcctcctcctggtgccgccggcgctcctcctcaatactatcctcagggttatcaaactgttcacggttatgctgttgctgaaggtagacctatgagggagcaccgtcttccttgctgtggtgtggggatcggctgggtcttgttcatctctggtttctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="21243" stop="19311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20943" g_stop="20599" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20598" i_stop="19709" i_length="890">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19708" g_stop="19633" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="418" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E360065" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20943" e_stop="20599"/>
          <exon e_start="19708" e_stop="19633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGACCGCGAAATCGCCGATCACGTAGCCGCGCCGATCTGATTCTGACAATCGGCGTCAAAAGCGATACGACTATTCGAATCAATCGCGGTAAGGCTAAACTGTTACTAGATCTCTGTCGGGGGAAAGTATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACGGTGTGTTTTCCCACAATTATATATATCTACAGGCGCTTCTATGATTACTTTTTTCTACGCTTCTTGATGAATTCTTTTTGTTTCCGTCAATTAAGTTAAAATTTGGGAATTATTAATTCAACTTTTCATCCTGTCTTTTTTAAAATAACAACAACATAGCTAGCTTAATCCCATGACTGAGATCTGGGGAGGCTATAGTGTATGCAAACCTTATTGGGAAGTAGAGAGGCTATATTAAGTATATATAGCAGGATTCGTTAAGGTACAGCTTTTGCGTGCTAATAAGTTAATTCGGGACAGAATGCAGGGTATATAATCTTTTTGTTTATAGTGTATGATCGGATGGTTGTATGGTCTTGTCATTTAGGAATTACATTTAGGGGATTGATAATATGGAGAACGCGTAGGGAAGAAATTATAGCTGTTAAATTAGAACTCATCAAAATGCCATCTGAATTTTGTATAATGTGGTGAGCTCTATCCAAAGATTTAAACATAATGAAAGAAGCATGTAAGATATATGTCTTGTGATGATATCCATTTCTACTAATCATTAAAAGCTGCACATCCCATATAGCAAAATACTCCAGAAAAATTCAAGCTGTAGCATGAATCAACTCCTGTGTGAAATCTAGATTTTTTGAATGACTTCATAGATTTTCTTCAGTTTGAACAGGGGTTATAACTATGTAATTGGCAACTTTTGTTGCTGGGAAGTGACCTTTTTTGGTACAGTCCAGCGCGTTGTGCTTGGCTGCTTATGTTAATGTTAATAAAACAAAATGTTTTCTGCTCTAATTGGTAGTTTGAAAATATTTGATTGTTCAAAACATTATTTTAATGTCAGATGATATACACCATGTTCATTATGTTTCTTCACCATGCCTTAGGTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTT</genome_strand>
        <mrna_strand>CGAAGACCACGAAATCGCCGATCACGTAG-CGCGCCGATCTGATTCTGACAATCGGCGTCAAAAGCGATACGACT--TCGAATCAATCGCGGTAACGCTAAGCTGTTACTAGATCTCTGTCAGGGGAAAGTATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGCCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456737" ref_strand="+" ref_description="SGN-E456737 [cSTS-30-K12]">
      <seq>cccgtcagggactgcactttttggcgtctattggaatggcttttgatttccacataacgatttgttgattttgagaatcttttgtgtgggcataatgtatgcagtcccgaaccatgttgagatgtattcgagtaagagtgggaaatggaagaagctgaaaaatgagatgatttttcatattcttgagtttacttgcaatgtgattgttaaaggggtggcgtattggttggtttgtatgcctgataagttcggatcgcgtgctgtgtttgtgcgatttgatgtggggaaactagtttttgagaagttaccttcgataggaaggcgtaagaagcatcaatatcttgtggaattggagggttctctttgtatgttagactgggatcataaagatgattgtcatatggatgtttgggtaatggatgatgtagatggttggagtaagaaatacagtgttggaccgttagttgggtttgacctaatattgggctgtttgaggaatggtgacattgtagctaagaatgaaaatggagtgatattcttgtgtgatcccataactagttcaatcaaggaaaaattcagctttgataataataaggatggatcatatgtgattgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="+" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="27788" stop="29006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28088" g_stop="28706" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="+" ref_id="SGN-E456737" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28088" e_stop="28706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTCCAGGACTGCACTTTTTGACGTCTATTGGTATGGCTTTTGATTACCAACATAACGAATTGTTGATCTTGAGAATCTTTTGTGTGGGAATAATGTTTGAAGTCCCGAATCACGTTGAGGTGTATTCGAGTAAGAGTGGGAAATGGAAGAAGCTGAAAAATGAGATGATTTTTCATATTGTTGAGTTTACTTGCAATGTGATCGTTAAAGGGGTTGCATATTGGTTGGTTTGTATGCCTGATAAGTTCGGATCGCGTGCTGTGTTTGTGCGATTTGATGTGGGGAAACTAGTGTTTGAGAAGTTACCTTCGATAGGAAGGCGTAAGAAACATCAATATCTTGTGGAATTGGAGGGTTCTCTTTGTATGTTAGACTGGGATCATAAAGATGATTGTCATATGGATGTTTGGGTAATGGATGATGTTGATGGTTGGAGTAAGAAATACAGTGTTGGACCTTTAGTCGGATTTGACCGAATCTTGGGTTGTTTGAGGAATGGTGACATTGTAGTTAAGAATGAAAATGGAGTCATATTCATTTGTGATCCCATAACTAATTCAGTCAAGGAAAATTTCAGCATTGATAATAGTAAGGATGAATCATATGTGGTTGTTGA</genome_strand>
        <mrna_strand>CCCGTCAGGGACTGCACTTTTTGGCGTCTATTGGAATGGCTTTTGATTTCC-ACATAACGATTTGTTGATTTTGAGAATCTTTTGTGTGGGCATAATGTATGCAGTCCCGAACCATGTTGAGATGTATTCGAGTAAGAGTGGGAAATGGAAGAAGCTGAAAAATGAGATGATTTTTCATATTCTTGAGTTTACTTGCAATGTGATTGTTAAAGGGGTGGCGTATTGGTTGGTTTGTATGCCTGATAAGTTCGGATCGCGTGCTGTGTTTGTGCGATTTGATGTGGGGAAACTAGTTTTTGAGAAGTTACCTTCGATAGGAAGGCGTAAGAAGCATCAATATCTTGTGGAATTGGAGGGTTCTCTTTGTATGTTAGACTGGGATCATAAAGATGATTGTCATATGGATGTTTGGGTAATGGATGATGTAGATGGTTGGAGTAAGAAATACAGTGTTGGACCGTTAGTTGGGTTTGACCTAATATTGGGCTGTTTGAGGAATGGTGACATTGTAGCTAAGAATGAAAATGGAGTGATATTCTTGTGTGATCCCATAACTAGTTCAATCAAGGAAAAATTCAGCTTTGATAATAATAAGGATGGATCATATGTGATTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426394" ref_strand="+" ref_description="SGN-E426394 [STM-46-D5]">
      <seq>cccgtcagggactgcactttttggcgtctattggaatggcttttgatttccacataacgatttgttgattttgagaatcttttgtgtgggcataatgtatgcagtcccgaaccatgttgagatgtattcgagtaagagtgggaaatggaagaagctgaaaaatgagatgatttttcatattcttgagtttacttgcaatgtgattgttaaaggggtggcgtattggttggtttgtatgcctgataagttcggatcgcgtgctgtgtttgtgcgatttgatgtggggaaactagtttttgagaagttaccttcgataggaaggcgtaagaagcatcaatatcttgtggaattggagggttctctttgtatgttagactgggatcataaagatgattgtcatatggatgtttgggtaatggatgatgtagatggttggagtaagaaatacagtgttggaccgttagttgggtttgacctaatattgggctgtttgaggaatggtgacattgtagctaagaatgaaaatggagtgatattcttgtgtgatcccataactagttcaatcaaagaaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="+" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="27788" stop="28964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28088" g_stop="28664" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="+" ref_id="SGN-E426394" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28088" e_stop="28664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTCCAGGACTGCACTTTTTGACGTCTATTGGTATGGCTTTTGATTACCAACATAACGAATTGTTGATCTTGAGAATCTTTTGTGTGGGAATAATGTTTGAAGTCCCGAATCACGTTGAGGTGTATTCGAGTAAGAGTGGGAAATGGAAGAAGCTGAAAAATGAGATGATTTTTCATATTGTTGAGTTTACTTGCAATGTGATCGTTAAAGGGGTTGCATATTGGTTGGTTTGTATGCCTGATAAGTTCGGATCGCGTGCTGTGTTTGTGCGATTTGATGTGGGGAAACTAGTGTTTGAGAAGTTACCTTCGATAGGAAGGCGTAAGAAACATCAATATCTTGTGGAATTGGAGGGTTCTCTTTGTATGTTAGACTGGGATCATAAAGATGATTGTCATATGGATGTTTGGGTAATGGATGATGTTGATGGTTGGAGTAAGAAATACAGTGTTGGACCTTTAGTCGGATTTGACCGAATCTTGGGTTGTTTGAGGAATGGTGACATTGTAGTTAAGAATGAAAATGGAGTCATATTCATTTGTGATCCCATAACTAATTCAGTCAAGGAAAATTT</genome_strand>
        <mrna_strand>CCCGTCAGGGACTGCACTTTTTGGCGTCTATTGGAATGGCTTTTGATTTCC-ACATAACGATTTGTTGATTTTGAGAATCTTTTGTGTGGGCATAATGTATGCAGTCCCGAACCATGTTGAGATGTATTCGAGTAAGAGTGGGAAATGGAAGAAGCTGAAAAATGAGATGATTTTTCATATTCTTGAGTTTACTTGCAATGTGATTGTTAAAGGGGTGGCGTATTGGTTGGTTTGTATGCCTGATAAGTTCGGATCGCGTGCTGTGTTTGTGCGATTTGATGTGGGGAAACTAGTTTTTGAGAAGTTACCTTCGATAGGAAGGCGTAAGAAGCATCAATATCTTGTGGAATTGGAGGGTTCTCTTTGTATGTTAGACTGGGATCATAAAGATGATTGTCATATGGATGTTTGGGTAATGGATGATGTAGATGGTTGGAGTAAGAAATACAGTGTTGGACCGTTAGTTGGGTTTGACCTAATATTGGGCTGTTTGAGGAATGGTGACATTGTAGCTAAGAATGAAAATGGAGTGATATTCTTGTGTGATCCCATAACTAGTTCAATCAAAGAAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747669" ref_strand="+" ref_description="SGN-E747669 [GI|91204698]">
      <seq>gaagaagaagaagaagaagagagctatattgtacggtacttcatcacatggcatccatttggggtttgttatctccatggataccttatttcatttctttcatagcttttttacttcttcttgaacagatctcttacatcaagaagaagcgttttcttcctggcccaactcttgtattccccttccttggcaacgtaattcccttagtcacaaatccaactaaattctgggaccttcaatcagctttagctaagtctactagccatggtttttctgttaactacatcataggtaagttcattctttacatccactcaactgacctctctcataaggtctttgccaatgtccgccctgacgctttccatcttatcggtcacccttttgggaaaaagctattcggcgaacataacttgatttacatgtttgggcaagaacataaagaccttcgccgacgaattgccccaaattttacccctaaagctctgggaacttacactgatattcaacagaggattattatcaaacacttcaagtcctggttagatgaagcatccaaatcccctaacaccccaatcccgcttcgtctactttgcagggatatgaacttggatacttctcagactgtgttcgttggtccatacttggatggagaatcgagaaagagatttaatgttgattacaattacttcaatgttgggttaaggaaacttcctgttgatttaccgggttttgccttcagaaatgctagattagcagttgggagattagttgacaccctttcggtttgtgtggaacaaagcttaaacaagatgaaaaacgaagaagaacccacatgcttgattgatttctggatgcaggaaaatttaagagagattaacgaagctaagatcaatggattacaaaagccatttcagtacagtaacaaggaacttggaggttacctgttcgacttcctctttgctgctcaagatgcttctacttctgctctgttatgggcaatcgtgcttctagattctcacccacaagttctggagaaagttcggtcggatgtagcgagattctggtcgccagaatctgaggagccgctgacggcggaaatgctcacggaaatgaagtacctggaagcggtggcgcgtgagataatcagaatcagagctccggcgacaatggtgccacatattgccggcgaagaattccggttaaccgaagattacgttatcccaaaaggaacaattgtgttcccgtcggtttttgattcatcatttcagggttttcctgaaccggagaaatttgaaccggaccggttcatggaggagagacaagaggagcgggtttacaaaaagaactttctagcattaggtgctgggccccatgcgtgtgtcggacagaagtatgctattaaccacttgatgcttatcattgctatgtttacggctctgattgatttcaagagacacaaaaccgacggctgcgatgacatctcgtatattccaaccattgctccaaaggatgattgcaaagttttccttgcacacaggtgcacacgatgattgcccattttttaaaaaaataatcaatttggccccattttaattatttttctatttttttccttgttttttttttaattttaaattttagtgtgtgaatacacgtaacttgatcaaatgatcaagattcttttaaaatgtttgttggagcaattgatggagtgacaaatatttgggattgtgtggaagattaataaaagaaattccttttaagggccctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="39211" stop="36845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38911" g_stop="37146" g_length="1766"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1765" r_length="1765" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E747669" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1766</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38911" e_stop="37146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAGAAGAAGAAGAGAGCTATATTGTACGGTACTTCATCACATGGCATCCATTTGGGGTTTGTTATCTCCATGGATACCTTATTTCATTTCTTTCATAGCTTTTTTACTTCTTCTTGAACAGATCTCTTACATCAAGAAGAAGCGTTTTCTTCCTGGCCCAACTCTTGTATTCCCCTTCCTTGGCAACGTAATTCCCTTAGTCACAAATCCAACTAAATTCTGGGACCTTCAATCAGCTTTAGCTAAGTCTACTAGCCATGGTTTTTCTGTTAACTACATCATAGGTAAGTTCATTCTTTACATCCACTCAACTGACCTCTCTCATAAGGTCTTTGCCAATGTCCGCCCTGACGCTTTCCATCTTATCGGTCACCCTTTTGGGAAAAAGCTATTCGGCGAACATAACTTGATTTACATGTTTGGGCAAGAACATAAAGACCTTCGCCGACGAATTGCCCCAAATTTTACCCCTAAAGCTCTGGGAACTTACACTGATATTCAACAGAGGATTATTATCAAACACTTCAAGTCCTGGTTAGATGAAGCATCCAAATCCCCTAACACCCCAATCCCGCTTCGTCTACTTTGCAGGGATATGAACTTGGATACTTCTCAGACTGTGTTCGTTGGTCCATACTTGGATGGAGAATCGAGAAAGAGATTTAATGTTGATTACAATTACTTCAATGTTGGGTTAATGAAACTTCCTGTTGATTTACCGGGTTTTGCCTTCAGAAATGCTAGATTAGCAGTTGGGAGATTAGTTGACACCCTTTCGGTTTGTGTGGAACAAAGCTTAAACAAGATGAAAAACGAAGAAGAACCCACATGCTTGATTGATTTCTGGATGCAGGAAAATTTAAGAGAGATTAACGAAGCTAAGATCAATGGATTACAAAAGCCATTTCAGTACAGTAACAAGGAACTTGGAGGTTACCTGTTCGACTTCCTCTTTGCTGCTCAAGATGCTTCTACTTCTGCTCTGTTATGGGCAATCGTGCTTCTAGATTCTCACCCACAAGTTCTGGAGAAAGTTCGGTCGGATGTAGCGAGATTCTGGTCGCCAGAATCTGAGGAGCCGCTGACGGCGGAAATGCTCAGGGAAATGAAGTACCTGGAAGCGGTGGCGCGTGAGATAATCAGAATCAGAGCTCCGGCGACAATGGTGCCACATATTGCCGGCGAAGAATTCCGGTTAACCGAAGATTACGTTATCCCAAAAGGAACAATTGTGTTCCCGTCGGTTTTTGATTCATCATTTCAGGGTTTTCCTGAACCGGAGAAATTTGAACCGGACCGGTTCATGGAGGAGAGACAAGAGGAGCGGGTTTACAAAAAGAACTTTCTAGCATTTGGTGCTGGGCCCCATGCGTGTGTCGGCCAGAAGTATGCTATTAACCACTTGATGCTTTTCATTGCTATGTTTACGGCTCTGATTGATTTCAAGAGACACAAAACCGACGGCTGCGATGACATCTCGTATATTCCAACCATTGCTCCAAAGGATGATTGCAAAGTTTTCCTTGCACACAGGTGCACACGATGATTGCCCATTTTTTAAAAAAATAATCAATTTGGCCCCATTTTAATTATTTTTCTATTTTTTTCCTTGTTTTTTTTTTTAATTTTAAATTTTAGTGTGTGAATACACGTAACTTGATCAAATGATCAAGATTCTTTTAAAATGTTTGTTGGAGCAATTGATGGAGTGACAAATATTTGGGATTGTGTGGAAGATTAATAAAAGAAATTCCTTTTA</genome_strand>
        <mrna_strand>GAAGAAGAAGAAGAAGAAGAGAGCTATATTGTACGGTACTTCATCACATGGCATCCATTTGGGGTTTGTTATCTCCATGGATACCTTATTTCATTTCTTTCATAGCTTTTTTACTTCTTCTTGAACAGATCTCTTACATCAAGAAGAAGCGTTTTCTTCCTGGCCCAACTCTTGTATTCCCCTTCCTTGGCAACGTAATTCCCTTAGTCACAAATCCAACTAAATTCTGGGACCTTCAATCAGCTTTAGCTAAGTCTACTAGCCATGGTTTTTCTGTTAACTACATCATAGGTAAGTTCATTCTTTACATCCACTCAACTGACCTCTCTCATAAGGTCTTTGCCAATGTCCGCCCTGACGCTTTCCATCTTATCGGTCACCCTTTTGGGAAAAAGCTATTCGGCGAACATAACTTGATTTACATGTTTGGGCAAGAACATAAAGACCTTCGCCGACGAATTGCCCCAAATTTTACCCCTAAAGCTCTGGGAACTTACACTGATATTCAACAGAGGATTATTATCAAACACTTCAAGTCCTGGTTAGATGAAGCATCCAAATCCCCTAACACCCCAATCCCGCTTCGTCTACTTTGCAGGGATATGAACTTGGATACTTCTCAGACTGTGTTCGTTGGTCCATACTTGGATGGAGAATCGAGAAAGAGATTTAATGTTGATTACAATTACTTCAATGTTGGGTTAAGGAAACTTCCTGTTGATTTACCGGGTTTTGCCTTCAGAAATGCTAGATTAGCAGTTGGGAGATTAGTTGACACCCTTTCGGTTTGTGTGGAACAAAGCTTAAACAAGATGAAAAACGAAGAAGAACCCACATGCTTGATTGATTTCTGGATGCAGGAAAATTTAAGAGAGATTAACGAAGCTAAGATCAATGGATTACAAAAGCCATTTCAGTACAGTAACAAGGAACTTGGAGGTTACCTGTTCGACTTCCTCTTTGCTGCTCAAGATGCTTCTACTTCTGCTCTGTTATGGGCAATCGTGCTTCTAGATTCTCACCCACAAGTTCTGGAGAAAGTTCGGTCGGATGTAGCGAGATTCTGGTCGCCAGAATCTGAGGAGCCGCTGACGGCGGAAATGCTCACGGAAATGAAGTACCTGGAAGCGGTGGCGCGTGAGATAATCAGAATCAGAGCTCCGGCGACAATGGTGCCACATATTGCCGGCGAAGAATTCCGGTTAACCGAAGATTACGTTATCCCAAAAGGAACAATTGTGTTCCCGTCGGTTTTTGATTCATCATTTCAGGGTTTTCCTGAACCGGAGAAATTTGAACCGGACCGGTTCATGGAGGAGAGACAAGAGGAGCGGGTTTACAAAAAGAACTTTCTAGCATTAGGTGCTGGGCCCCATGCGTGTGTCGGACAGAAGTATGCTATTAACCACTTGATGCTTATCATTGCTATGTTTACGGCTCTGATTGATTTCAAGAGACACAAAACCGACGGCTGCGATGACATCTCGTATATTCCAACCATTGCTCCAAAGGATGATTGCAAAGTTTTCCTTGCACACAGGTGCACACGATGATTGCCCATTTTTTAAAAAAATAATCAATTTGGCCCCATTTTAATTATTTTTCTATTTTTTTCCTTG-TTTTTTTTTTAATTTTAAATTTTAGTGTGTGAATACACGTAACTTGATCAAATGATCAAGATTCTTTTAAAATGTTTGTTGGAGCAATTGATGGAGTGACAAATATTTGGGATTGTGTGGAAGATTAATAAAAGAAATTCCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391370" ref_strand="+" ref_description="SGN-E391370 [TUS-48-B9]">
      <seq>ggaacttggaggttacctgttctacttcctctttgctgctcgagatgcttctacttctgctctgttatgggcaatcgtgcttctagattctcacccacaagttctggagaaagttcggtcggatgtagcgagattctggtcgccataatctgaggagccgctgacggcggaaatgctcagggaaatgaagtacctggaagcggtggcgcgtgagataatcagaatcagagctccggcgacaatggtgccacatattgccggcgaagaattccggttaaccgaagattactttatcccaaaaggaacaattgtgttcccgtcggtttttgattcatcatttcaggggtttcctgaaccggagaaatttgaaccggaccggttcatggaggagagacaagaggagcgggtttacaaaaagaactttctagcatttggtgctgggccccatgcgtgtgtcggccagaagtatgctattaaccacttgatgcttttcattgctatgtttacggctgtgattgatttccagagacactaaaccgacggttgcgatgacatctcgtatattccaaccattgctccaaaggatgattggaaagttttccttgcacaaaggtgcacacgatgattggccctttttttaaaaaaataatcattttgggccccttttaattaattttaccattttttttccttggtttttttttatttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="38283" stop="36974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37983" g_stop="37274" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E391370" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37983" e_stop="37274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTTGGAGGTTACCTGTTCGACTTCCTCTTTGCTGCTCAAGATGCTTCTACTTCTGCTCTGTTATGGGCAATCGTGCTTCTAGATTCTCACCCACAAGTTCTGGAGAAAGTTCGGTCGGATGTAGCGAGATTCTGGTCGCCAGAATCTGAGGAGCCGCTGACGGCGGAAATGCTCAGGGAAATGAAGTACCTGGAAGCGGTGGCGCGTGAGATAATCAGAATCAGAGCTCCGGCGACAATGGTGCCACATATTGCCGGCGAAGAATTCCGGTTAACCGAAGATTACGTTATCCCAAAAGGAACAATTGTGTTCCCGTCGGTTTTTGATTCATCATTTCAGGGTTTTCCTGAACCGGAGAAATTTGAACCGGACCGGTTCATGGAGGAGAGACAAGAGGAGCGGGTTTACAAAAAGAACTTTCTAGCATTTGGTGCTGGGCCCCATGCGTGTGTCGGCCAGAAGTATGCTATTAACCACTTGATGCTTTTCATTGCTATGTTTACGGCTCTGATTGATTTCAAGAGACACAAAACCGACGGCTGCGATGACATCTCGTATATTCCAACCATTGCTCCAAAGGATGATTGCAAAGTTTTCCTTGCACACAGGTGCACACGATGATT-GCCCATTTTTTAAAAAAATAATCAATTTGGCCCCATTTTAATT-ATTTTTCTATTTTTTTCCTTGTTTTTTTTTTTAATTTTAA</genome_strand>
        <mrna_strand>GGAACTTGGAGGTTACCTGTTCTACTTCCTCTTTGCTGCTCGAGATGCTTCTACTTCTGCTCTGTTATGGGCAATCGTGCTTCTAGATTCTCACCCACAAGTTCTGGAGAAAGTTCGGTCGGATGTAGCGAGATTCTGGTCGCCATAATCTGAGGAGCCGCTGACGGCGGAAATGCTCAGGGAAATGAAGTACCTGGAAGCGGTGGCGCGTGAGATAATCAGAATCAGAGCTCCGGCGACAATGGTGCCACATATTGCCGGCGAAGAATTCCGGTTAACCGAAGATTACTTTATCCCAAAAGGAACAATTGTGTTCCCGTCGGTTTTTGATTCATCATTTCAGGGGTTTCCTGAACCGGAGAAATTTGAACCGGACCGGTTCATGGAGGAGAGACAAGAGGAGCGGGTTTACAAAAAGAACTTTCTAGCATTTGGTGCTGGGCCCCATGCGTGTGTCGGCCAGAAGTATGCTATTAACCACTTGATGCTTTTCATTGCTATGTTTACGGCTGTGATTGATTTCCAGAGACACTAAACCGACGGTTGCGATGACATCTCGTATATTCCAACCATTGCTCCAAAGGATGATTGGAAAGTTTTCCTTGCACAAAGGTGCACACGATGATTGGCCCTTTTTTTAAAAAAATAATCATTTTGGGCCCCTTTTAATTAATTTTACCATTTTTTTTCCTTGGTTTTTTTTTATTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291681" ref_strand="+" ref_description="SGN-E291681 [cLET-6-M23]">
      <seq>gaacttggaggttacctgttcgacttcctctttgctgctcaagatgcttctacttctgctctgttatgggcaatcgtgcttctagattctcacccacaagttctggagaaagttcggtcggatgtagcgagattctggtcgccagaatctgaggagccgctgacggcggaaatgctcacggaaatgaagtacctggaagcggtggcgcgtgagataatcagaatcagagctccggcgacaatggtgccacatattgccggcgaagaattccggttaaccgaagattacgttatcccaaaaggaacaattgtgttcccgtcggtttttgattcatcatttcagggttttcctgaaccggagaaatttgaaccggaccggttcatggaggagagacaagaggagcgggtttacaaaaagaactttctagcattaggtgctgggccccatgcgtgtgtcggacagaagtatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="38282" stop="37211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37982" g_stop="37511" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E291681" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37982" e_stop="37511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTGGAGGTTACCTGTTCGACTTCCTCTTTGCTGCTCAAGATGCTTCTACTTCTGCTCTGTTATGGGCAATCGTGCTTCTAGATTCTCACCCACAAGTTCTGGAGAAAGTTCGGTCGGATGTAGCGAGATTCTGGTCGCCAGAATCTGAGGAGCCGCTGACGGCGGAAATGCTCAGGGAAATGAAGTACCTGGAAGCGGTGGCGCGTGAGATAATCAGAATCAGAGCTCCGGCGACAATGGTGCCACATATTGCCGGCGAAGAATTCCGGTTAACCGAAGATTACGTTATCCCAAAAGGAACAATTGTGTTCCCGTCGGTTTTTGATTCATCATTTCAGGGTTTTCCTGAACCGGAGAAATTTGAACCGGACCGGTTCATGGAGGAGAGACAAGAGGAGCGGGTTTACAAAAAGAACTTTCTAGCATTTGGTGCTGGGCCCCATGCGTGTGTCGGCCAGAAGTATGCTA</genome_strand>
        <mrna_strand>GAACTTGGAGGTTACCTGTTCGACTTCCTCTTTGCTGCTCAAGATGCTTCTACTTCTGCTCTGTTATGGGCAATCGTGCTTCTAGATTCTCACCCACAAGTTCTGGAGAAAGTTCGGTCGGATGTAGCGAGATTCTGGTCGCCAGAATCTGAGGAGCCGCTGACGGCGGAAATGCTCACGGAAATGAAGTACCTGGAAGCGGTGGCGCGTGAGATAATCAGAATCAGAGCTCCGGCGACAATGGTGCCACATATTGCCGGCGAAGAATTCCGGTTAACCGAAGATTACGTTATCCCAAAAGGAACAATTGTGTTCCCGTCGGTTTTTGATTCATCATTTCAGGGTTTTCCTGAACCGGAGAAATTTGAACCGGACCGGTTCATGGAGGAGAGACAAGAGGAGCGGGTTTACAAAAAGAACTTTCTAGCATTAGGTGCTGGGCCCCATGCGTGTGTCGGACAGAAGTATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E593981" ref_strand="+" ref_description="SGN-E593981 [37223]">
      <seq>cttcggttaactggaattcttcgccggcaatatgtggcaccatagttgccggagctctgattctgattatctcacgcgccaccgcttccagggtacttcatttccctgagcatctccaccgtcagcggctcctcagattctggcgaccagaatttcgctacctccgaccgaactttctccagaacttgtgggtgagaatctaaaagcacgattgcccataacagagcagaagtagaagcatcttgagcagcaaagaggaagtcgaacaggtaacctccaagttccttgttagtgtactggaatggcttttgtaatccattgatcttagcttcgttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="+" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="37400" stop="38335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37700" g_stop="38034" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="337" polyA_stop="347"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="+" ref_id="SGN-E593981" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E593981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37700" e_stop="38034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGGTTAACCGGAATTCTTCGCCGGCAATATGTGGCACCATTGTCGCCGGAGCTCTGATTCTGATTATCTCACGCGCCACCGCTTCCA-GGTACTTCATTTCCCTGAGCATTTCCGCCGTCAGCGGCTCCTCAGATTCTGGCGACCAGAATCTCGCTACATCCGACCGAACTTTCTCCAGAACTTGTGGGTGAGAATCTAGAAGCACGATTGCCCATAACAGAGCAGAAGTAGAAGCATCTTGAGCAGCAAAGAGGAAGTCGAACAGGTAACCTCCAAGTTCCTTGTTACTGTACTGAAATGGCTTTTGTAATCCATTGATCTTAGCTTCGTTA</genome_strand>
        <mrna_strand>CTTCGGTTAACTGGAATTCTTCGCCGGCAATATGTGGCACCATAGTTGCCGGAGCTCTGATTCTGATTATCTCACGCGCCACCGCTTCCAGGGTACTTCATTTCCCTGAGCATCTCCACCGTCAGCGGCTCCTCAGATTCTGGCGACCAGAATTTCGCTACCTCCGACCGAACTTTCTCCAGAACTTGTGGGTGAGAATCTAAAAGCACGATTGCCCATAACAGAGCAGAAGTAGAAGCATCTTGAGCAGCAAAGAGGAAGTCGAACAGGTAACCTCCAAGTTCCTTGTTAGTGTACTGGAATGGCTTTTGTAATCCATTGATCTTAGCTTCGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325299" ref_strand="+" ref_description="SGN-E325299 [cTOC-1-J1]">
      <seq>tttgccaatgtccgccctgacgctttccatcttatcggtcacccttttgggaaaaagctattcggcgaacataacttgatttacatgtttgggcaagaacataaagaccttcgccgacgaattgccccaaattttacccctaaagctctgggaacttacactgatattcaacagaggattattatcaaacacttcaagtcctggttagatgaagcatccaaatcccctaacaccccaatcccgcttcgtctactttgcagggatatgaacttggatacttctcagactgtgttcgttggtccatacttggatggagaatcgagaaagagatttaatgttgattacaattacttcaatgttgggttaaggaaacttcctgttgatttaccgggttttgccttcagaaatgctagattagcagttgggagattagttgacaccctttcggtttgtgtggaacaaagcttaaacaagatgaaaaacgaagaagaacccacatgcttgattgatttctggatgcaggaaaatttaagagagattaacgaagctaagatcaatggattacaaaagccatttcagtacagtaacaaggaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="38873" stop="37677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38573" g_stop="37977" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E325299" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38573" e_stop="37977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCAATGTCCGCCCTGACGCTTTCCATCTTATCGGTCACCCTTTTGGGAAAAAGCTATTCGGCGAACATAACTTGATTTACATGTTTGGGCAAGAACATAAAGACCTTCGCCGACGAATTGCCCCAAATTTTACCCCTAAAGCTCTGGGAACTTACACTGATATTCAACAGAGGATTATTATCAAACACTTCAAGTCCTGGTTAGATGAAGCATCCAAATCCCCTAACACCCCAATCCCGCTTCGTCTACTTTGCAGGGATATGAACTTGGATACTTCTCAGACTGTGTTCGTTGGTCCATACTTGGATGGAGAATCGAGAAAGAGATTTAATGTTGATTACAATTACTTCAATGTTGGGTTAATGAAACTTCCTGTTGATTTACCGGGTTTTGCCTTCAGAAATGCTAGATTAGCAGTTGGGAGATTAGTTGACACCCTTTCGGTTTGTGTGGAACAAAGCTTAAACAAGATGAAAAACGAAGAAGAACCCACATGCTTGATTGATTTCTGGATGCAGGAAAATTTAAGAGAGATTAACGAAGCTAAGATCAATGGATTACAAAAGCCATTTCAGTACAGTAACAAGGAACTT</genome_strand>
        <mrna_strand>TTTGCCAATGTCCGCCCTGACGCTTTCCATCTTATCGGTCACCCTTTTGGGAAAAAGCTATTCGGCGAACATAACTTGATTTACATGTTTGGGCAAGAACATAAAGACCTTCGCCGACGAATTGCCCCAAATTTTACCCCTAAAGCTCTGGGAACTTACACTGATATTCAACAGAGGATTATTATCAAACACTTCAAGTCCTGGTTAGATGAAGCATCCAAATCCCCTAACACCCCAATCCCGCTTCGTCTACTTTGCAGGGATATGAACTTGGATACTTCTCAGACTGTGTTCGTTGGTCCATACTTGGATGGAGAATCGAGAAAGAGATTTAATGTTGATTACAATTACTTCAATGTTGGGTTAAGGAAACTTCCTGTTGATTTACCGGGTTTTGCCTTCAGAAATGCTAGATTAGCAGTTGGGAGATTAGTTGACACCCTTTCGGTTTGTGTGGAACAAAGCTTAAACAAGATGAAAAACGAAGAAGAACCCACATGCTTGATTGATTTCTGGATGCAGGAAAATTTAAGAGAGATTAACGAAGCTAAGATCAATGGATTACAAAAGCCATTTCAGTACAGTAACAAGGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330193" ref_strand="+" ref_description="SGN-E330193 [cTOD-4-E15]">
      <seq>aaccttcatatattgacccttcttccttcttccatcttactatataaaccctaaccacaccattcaaatccatattatcgaacagtttccggtggagggctaaggaagaagaagaagaagaagagagctatattgtacggtacttcatcacatggcatccatttggggtttgttatctccatggataccttatttcatttctttcatagcttttttacttcttcttgaacagatctcttacatcaagaagaagcgttttcttcctggcccaactcttgtattccccttccttggcaacgtaattcccttagtcacaaatccaactaaattctgggaccttcaatcagctttagctaagtctactagccatggtttttctgttaactacatcataggtaagttcattctttacatccactcaactgacctctctcataaggtctttgccaatgtccgccctgacgctttccatcttatcggtcacccttttgggaaaaagctattcggcgaacataacttgatttacatgtttgggcaagaacataaagaccttcgccgacgaattgccccaaattttacccctaaagctctgggaacttacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="39315" stop="38112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39015" g_stop="38412" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E330193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39015" e_stop="38412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTTCATATATTGACCCTTCTTCCTTCTTCCATCTTACTATATAAACCCTAACCACACCATTCAAATCCATATTATCGAACAGTTTCCGGTGGAGGGCTAAGGAAGAAGAAGAAGAAGAAGAGAGCTATATTGTACGGTACTTCATCACATGGCATCCATTTGGGGTTTGTTATCTCCATGGATACCTTATTTCATTTCTTTCATAGCTTTTTTACTTCTTCTTGAACAGATCTCTTACATCAAGAAGAAGCGTTTTCTTCCTGGCCCAACTCTTGTATTCCCCTTCCTTGGCAACGTAATTCCCTTAGTCACAAATCCAACTAAATTCTGGGACCTTCAATCAGCTTTAGCTAAGTCTACTAGCCATGGTTTTTCTGTTAACTACATCATAGGTAAGTTCATTCTTTACATCCACTCAACTGACCTCTCTCATAAGGTCTTTGCCAATGTCCGCCCTGACGCTTTCCATCTTATCGGTCACCCTTTTGGGAAAAAGCTATTCGGCGAACATAACTTGATTTACATGTTTGGGCAAGAACATAAAGACCTTCGCCGACGAATTGCCCCAAATTTTACCCCTAAAGCTCTGGGAACTTACACT</genome_strand>
        <mrna_strand>AACCTTCATATATTGACCCTTCTTCCTTCTTCCATCTTACTATATAAACCCTAACCACACCATTCAAATCCATATTATCGAACAGTTTCCGGTGGAGGGCTAAGGAAGAAGAAGAAGAAGAAGAGAGCTATATTGTACGGTACTTCATCACATGGCATCCATTTGGGGTTTGTTATCTCCATGGATACCTTATTTCATTTCTTTCATAGCTTTTTTACTTCTTCTTGAACAGATCTCTTACATCAAGAAGAAGCGTTTTCTTCCTGGCCCAACTCTTGTATTCCCCTTCCTTGGCAACGTAATTCCCTTAGTCACAAATCCAACTAAATTCTGGGACCTTCAATCAGCTTTAGCTAAGTCTACTAGCCATGGTTTTTCTGTTAACTACATCATAGGTAAGTTCATTCTTTACATCCACTCAACTGACCTCTCTCATAAGGTCTTTGCCAATGTCCGCCCTGACGCTTTCCATCTTATCGGTCACCCTTTTGGGAAAAAGCTATTCGGCGAACATAACTTGATTTACATGTTTGGGCAAGAACATAAAGACCTTCGCCGACGAATTGCCCCAAATTTTACCCCTAAAGCTCTGGGAACTTACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305316" ref_strand="+" ref_description="SGN-E305316 [cLEX-15-L1]">
      <seq>agaagaagaagaagaagagagctatattgtacggtacttcatcacatggcatccatttggggtttgttatctccatggataccttatttcatttctttcatagcttttttacttcttcttgaacagatctcttacatcaagaagaagcgttttcttcctggcccaactcttgtattccccttccttggcaacgtaattcccttagtcacaaatccaactaaattctgggaccttcaatcagctttagctaagtctactagccatggtttttctgttaactacatcataggtaagttcattctttacatccactcaactgacctctctcataaggtctttgccaatgtccgccctgacgctttccatcttatcggtcacccttttgggaaaaagctattcggcgaacataacttgatttacatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="39209" stop="38183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38909" g_stop="38483" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E305316" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38909" e_stop="38483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGAAGAAGAAGAGAGCTATATTGTACGGTACTTCATCACATGGCATCCATTTGGGGTTTGTTATCTCCATGGATACCTTATTTCATTTCTTTCATAGCTTTTTTACTTCTTCTTGAACAGATCTCTTACATCAAGAAGAAGCGTTTTCTTCCTGGCCCAACTCTTGTATTCCCCTTCCTTGGCAACGTAATTCCCTTAGTCACAAATCCAACTAAATTCTGGGACCTTCAATCAGCTTTAGCTAAGTCTACTAGCCATGGTTTTTCTGTTAACTACATCATAGGTAAGTTCATTCTTTACATCCACTCAACTGACCTCTCTCATAAGGTCTTTGCCAATGTCCGCCCTGACGCTTTCCATCTTATCGGTCACCCTTTTGGGAAAAAGCTATTCGGCGAACATAACTTGATTTACATGTTTG</genome_strand>
        <mrna_strand>AGAAGAAGAAGAAGAAGAGAGCTATATTGTACGGTACTTCATCACATGGCATCCATTTGGGGTTTGTTATCTCCATGGATACCTTATTTCATTTCTTTCATAGCTTTTTTACTTCTTCTTGAACAGATCTCTTACATCAAGAAGAAGCGTTTTCTTCCTGGCCCAACTCTTGTATTCCCCTTCCTTGGCAACGTAATTCCCTTAGTCACAAATCCAACTAAATTCTGGGACCTTCAATCAGCTTTAGCTAAGTCTACTAGCCATGGTTTTTCTGTTAACTACATCATAGGTAAGTTCATTCTTTACATCCACTCAACTGACCTCTCTCATAAGGTCTTTGCCAATGTCCGCCCTGACGCTTTCCATCTTATCGGTCACCCTTTTGGGAAAAAGCTATTCGGCGAACATAACTTGATTTACATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311773" ref_strand="+" ref_description="SGN-E311773 [cLEZ-9-K22]">
      <seq>tcaatcgattcgtttttccgctttccttatatcgaatataccacactttttcctcctccaaaagttgaaactacctgtaaagaggttaaatgagactctgtacaatctgaaatttctgcctaatataattcagatttggtctgtttggttttttcttcttccacgttttccaacttcttgcacaattttcactatattttttctctttcagttttcttgtttgacccaccaatccaaccttcatatattgacccttcttccttcttccatcttactatataaaccctaaccacaccattcaaatccatattatcgaacagtttccggtggagggctaaggaagaagaagaagaagaagagagctatattgtacggtacttcatcacatggcatccatttggggtttgttatctccatggataccttatttcatttctttcatagcttttttacttcttcttgaacagatctcttacatcaagaagaagcgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="39541" stop="38457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39241" g_stop="38757" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E311773" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39241" e_stop="38757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGATTCGTTTTTCCGCTTTCCTTATATCGAATATACCACACTTTCTCCTCCTCCAAAAGTTGAAACTACCTGTAAAGAGGTTAAATGAGACTCTG-A-AAT-T----T--CTGCCTAATATAATTCAGATTTGGTCTGTTTGGTTTTTTCTTCTTCCACGTTTTCCAACTTGTTGCACAATTTTCACTATATTTTTTCTCTTTCGGTTTTCTTGTTTGACCCACCAATCCAACCTTCATATATTGACCCTTCTTCCTTCTTCCATCTTACTATATAAACCCTAACCACACCATTCAAATCCATATTATCGAACAGTTTCCGGTGGAGGGCTAAGGAAGAAGAAGAAGAAGAAGAGAGCTATATTGTACGGTACTTCATCACATGGCATCCATTTGGGGTTTGTTATCTCCATGGATACCTTATTTCATTTCTTTCATAGCTTTTTTACTTCTTCTTGAACAGATCTCTTACATCAAGAAGAAGCGTTTT</genome_strand>
        <mrna_strand>TCAATCGATTCGTTTTTCCGCTTTCCTTATATCGAATATACCACACTTTTTCCTCCTCCAAAAGTTGAAACTACCTGTAAAGAGGTTAAATGAGACTCTGTACAATCTGAAATTTCTGCCTAATATAATTCAGATTTGGTCTGTTTGGTTTTTTCTTCTTCCACGTTTTCCAACTTCTTGCACAATTTTCACTATATTTTTTCTCTTTCAGTTTTCTTGTTTGACCCACCAATCCAACCTTCATATATTGACCCTTCTTCCTTCTTCCATCTTACTATATAAACCCTAACCACACCATTCAAATCCATATTATCGAACAGTTTCCGGTGGAGGGCTAAGGAAGAAGAAGAAGAAGAAGAGAGCTATATTGTACGGTACTTCATCACATGGCATCCATTTGGGGTTTGTTATCTCCATGGATACCTTATTTCATTTCTTTCATAGCTTTTTTACTTCTTCTTGAACAGATCTCTTACATCAAGAAGAAGCGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370678" ref_strand="+" ref_description="SGN-E370678 [TUS-28-B6](-)">
      <seq>ctcctccgtattcaacatcgccgtttcagcagaagtaacaaaaacaacaccatgtcgaagaggaggactagggagccaaaggaagagactgttactcttggtccttctgtgagagagggagagcttgtttttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctctcagggctcttgctcattcaggaatgaaaattggtcgtatagaggacgtgactccaattcctactgatagcactcgcagaaagggtggtaggagaggacgaaggctgtaaggttgcttgcttctcttgtcaagaaggagatgcagtttcttgttgagaatgctgcaggtgttatttttgatatggacttgaatcttattcacctctactatgtagttctactgatgttggctttgcctataaattttgcttcttttttcgtggttaaatttgtgaaacaattatgagaaatatgaattttagcctactatcattctgttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="43373" stop="39829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43073" g_stop="43020" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43019" i_stop="42218" i_length="802">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="174" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="220" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="306" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40587" g_stop="40354" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="541" r_length="235" r_score="0.735"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40353" i_stop="40302" i_length="52">
            <donor d_prob="0.000" d_score="0.50"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40301" g_stop="40129" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="714" r_length="173" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="715" polyA_stop="725"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E370678" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43073" e_stop="43020"/>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40354"/>
          <exon e_start="40301" e_stop="40129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATGGTAATGAAATCTATCGAATATAATAGTTTTCCTTGAATATTGTGGATGAATTTGAGGTTATTTGCTGCTTTTATCTTTAGGATAGCTTCAATTTAATCCATAGAGTTACCTGGGTATGCTTAGATTAGTTATTCTTCTAGATTTCTGAAAAAAAGATTATATCTTTCCTAGTGAATATCTGTTTATCCTCTGTTATTGTTTTGATCTTGCTTAAAGACATGGTCCCCATTGTTTCTATCTCTTGCTTATAACATTTAGATATCAGTAGTTTAGAACAATGATCGGTCGAATTGGAACATAACTCAGTAGACTATCTGGATACTTCACTTTGAAAAATGATACAAACTGGATACATCATATTTTAGCTGTAGATAATGGTTGATTAAAGTTTTGCTCTGTAAACCAAATTGTTGAAGCTTATGACTTCTAAATTAAAGAATTTGGACAAGCTGTAGTTGGTTTAGAAGTGATGCATGAACTCTATAAGTGAGCCTTGTTGAACCTTGTTACATAGTCAGATTGCTTAATCAGTATTTTAAGTTTATGGTTAAAGGCCAAAATCCATTTGGTTTAGTGGGTTCTTTATTGATTATTTATACATATTTAGTTCAACTTTTTTGACAGAGATATAGAGTGTTCTGGTGAACAGTTAGCTTCTATGGTGGATCTGCCCTTTGTTAGATTTACTTTTTAAAAGGAAATTGTTGTTTTGCTTTGTGGGATAAGTGAAGGAAAGAATGATCAGTGTTGAGCTTTCTTTCGATATCTATTTTGTTGTAATGTTAATTGCCTGGCCTTGCAGTCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGT-CAGCTAAGCCTTGTGAGAAACACT--TCAATGTTGATGATCAC-ATAACTTTG-TAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACTATCATTCTGTTA</genome_strand>
        <mrna_strand>CTCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCATTCAGGAATGAAAATTGGTCGTATAGAGGACG-TGA-CTCCAATTCCTACTGAT-AGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGTTGCTTGCTTCTCTTGTCAAGAAGGAGA-TGCAGTT....................................................TCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACTATCATTCTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711177" ref_strand="+" ref_description="SGN-E711177 [FB01AH08]">
      <seq>cattatcgccgtttcagcagaagtaacaaaaacaacaccatgtcgaagaggaggactagggagccaaaggaagagactgttactcttggtccttctgtgagagagggagagcttgtttttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctctcagggctcttgctcgttcaggaatgaaaattggtcgtatagaggacgtgactccaattcctactgatagcactcgcagaaagggtggtaggagaggacgaaggctgtaaggcttgttgagaatgctgcaggtgttatttttgatatggacttgaatcttattcacctctactatgtagttctactgatgttggctttgcctataaattttgcttcttttttcgtggttaaatttgtgaaacaattatgagaaatatgaattttagcctactatcattctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="43361" stop="39830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43061" g_stop="43020" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43019" i_stop="42218" i_length="802">
            <donor d_prob="0.993" d_score="0.95"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="162" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="208" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="294" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40587" g_stop="40458" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="424" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40457" i_stop="40371" i_length="87">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40370" g_stop="40130" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="665" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E711177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43061" e_stop="43020"/>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40458"/>
          <exon e_start="40370" e_stop="40130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATGGTAATGAAATCTATCGAATATAATAGTTTTCCTTGAATATTGTGGATGAATTTGAGGTTATTTGCTGCTTTTATCTTTAGGATAGCTTCAATTTAATCCATAGAGTTACCTGGGTATGCTTAGATTAGTTATTCTTCTAGATTTCTGAAAAAAAGATTATATCTTTCCTAGTGAATATCTGTTTATCCTCTGTTATTGTTTTGATCTTGCTTAAAGACATGGTCCCCATTGTTTCTATCTCTTGCTTATAACATTTAGATATCAGTAGTTTAGAACAATGATCGGTCGAATTGGAACATAACTCAGTAGACTATCTGGATACTTCACTTTGAAAAATGATACAAACTGGATACATCATATTTTAGCTGTAGATAATGGTTGATTAAAGTTTTGCTCTGTAAACCAAATTGTTGAAGCTTATGACTTCTAAATTAAAGAATTTGGACAAGCTGTAGTTGGTTTAGAAGTGATGCATGAACTCTATAAGTGAGCCTTGTTGAACCTTGTTACATAGTCAGATTGCTTAATCAGTATTTTAAGTTTATGGTTAAAGGCCAAAATCCATTTGGTTTAGTGGGTTCTTTATTGATTATTTATACATATTTAGTTCAACTTTTTTGACAGAGATATAGAGTGTTCTGGTGAACAGTTAGCTTCTATGGTGGATCTGCCCTTTGTTAGATTTACTTTTTAAAAGGAAATTGTTGTTTTGCTTTGTGGGATAAGTGAAGGAAAGAATGATCAGTGTTGAGCTTTCTTTCGATATCTATTTTGTTGTAATGTTAATTGCCTGGCCTTGCAGTCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGTCAGCTAAGCCTTGTGAGAAACACTTCAATGTTGATGATCACATAACTTTGTAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACTATCATTCTGTT</genome_strand>
        <mrna_strand>CATTATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAG.......................................................................................AGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACTATCATTCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732751" ref_strand="+" ref_description="SGN-E732751 [LB03AB05]">
      <seq>cgcatctgaatccaaatcgccttctctgaactcaatctcctccgtattcaacatcgccgtttcagcagaagtaacaaaaacaacaccatgtcgaagaggaggactagggagccaaaggaagagactgttactcttggtccttctgtgagagagggagagcttgtttttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctctcagggctcttgctcgttcaggaatgaaaattggtcgtatagaggacgtgactccaattcctactgatagcactcgcagaaagggtggtaggagaggacgaaggctgtaaggcttgttgagaatgctgcaggtgttatttttgatatggacttgaatcttattcacctctactatgtagttctactgatgttggctttgcctataaattttgcttcttttttcgtggttaaatttgtgaaacaattatgagaaatatgaattttagcctactatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="43408" stop="39837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43109" g_stop="43020" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43019" i_stop="42218" i_length="802">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="210" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="256" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="342" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40587" g_stop="40458" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="472" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40457" i_stop="40371" i_length="87">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40370" g_stop="40138" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="705" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="706" polyA_stop="722"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E732751" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43109" e_stop="43020"/>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40458"/>
          <exon e_start="40370" e_stop="40138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCTGAATCCAAATCGCCTTCTCTGAACTCAATCTCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATGGTAATGAAATCTATCGAATATAATAGTTTTCCTTGAATATTGTGGATGAATTTGAGGTTATTTGCTGCTTTTATCTTTAGGATAGCTTCAATTTAATCCATAGAGTTACCTGGGTATGCTTAGATTAGTTATTCTTCTAGATTTCTGAAAAAAAGATTATATCTTTCCTAGTGAATATCTGTTTATCCTCTGTTATTGTTTTGATCTTGCTTAAAGACATGGTCCCCATTGTTTCTATCTCTTGCTTATAACATTTAGATATCAGTAGTTTAGAACAATGATCGGTCGAATTGGAACATAACTCAGTAGACTATCTGGATACTTCACTTTGAAAAATGATACAAACTGGATACATCATATTTTAGCTGTAGATAATGGTTGATTAAAGTTTTGCTCTGTAAACCAAATTGTTGAAGCTTATGACTTCTAAATTAAAGAATTTGGACAAGCTGTAGTTGGTTTAGAAGTGATGCATGAACTCTATAAGTGAGCCTTGTTGAACCTTGTTACATAGTCAGATTGCTTAATCAGTATTTTAAGTTTATGGTTAAAGGCCAAAATCCATTTGGTTTAGTGGGTTCTTTATTGATTATTTATACATATTTAGTTCAACTTTTTTGACAGAGATATAGAGTGTTCTGGTGAACAGTTAGCTTCTATGGTGGATCTGCCCTTTGTTAGATTTACTTTTTAAAAGGAAATTGTTGTTTTGCTTTGTGGGATAAGTGAAGGAAAGAATGATCAGTGTTGAGCTTTCTTTCGATATCTATTTTGTTGTAATGTTAATTGCCTGGCCTTGCAGTCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGTCAGCTAAGCCTTGTGAGAAACACTTCAATGTTGATGATCACATAACTTTGTAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACTATC</genome_strand>
        <mrna_strand>CGCATCTGAATCCAAATCGCCTTCTCTGAACTCAATCTCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAG.......................................................................................AGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719861" ref_strand="+" ref_description="SGN-E719861 [FC09AD04]">
      <seq>aatcggccgaattggcagctgaatccaaatcgccttctctgaactcaatctcctccgtattcaacatcgccgtttcagcagaagtaacaaaaacaacaccatgtcgaagaggaggactagggagccaaaggaagagactgttactcttggtccttctgtgagagagggagagcttgtttttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctcaaagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctctcagggctcttgctcgttcaggaatgaaaattggtcgtatagaggacgtgactccaattcctactgatagcactcgcagaaagggtggtaggagaggacgaaggctgtaaggcttgttgagaatgctgcaggtgttatttttgatatggacttgaatcttattcacctctactatgtagttctactgatgttggctttgcctataaattttgcttcttttttcgtggttaaatttgtgaaacaattatgagaaatatgaattttagcctactntnnnaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="43408" stop="39839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43104" g_stop="43020" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="103" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43019" i_stop="42218" i_length="802">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="223" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="269" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="355" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40587" g_stop="40458" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="485" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40457" i_stop="40371" i_length="87">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40370" g_stop="40138" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="718" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="721" polyA_stop="743"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E719861" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43104" e_stop="43020"/>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40458"/>
          <exon e_start="40370" e_stop="40138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATCCAAATCGCCTTCTCTGAACTCAATCTCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATGGTAATGAAATCTATCGAATATAATAGTTTTCCTTGAATATTGTGGATGAATTTGAGGTTATTTGCTGCTTTTATCTTTAGGATAGCTTCAATTTAATCCATAGAGTTACCTGGGTATGCTTAGATTAGTTATTCTTCTAGATTTCTGAAAAAAAGATTATATCTTTCCTAGTGAATATCTGTTTATCCTCTGTTATTGTTTTGATCTTGCTTAAAGACATGGTCCCCATTGTTTCTATCTCTTGCTTATAACATTTAGATATCAGTAGTTTAGAACAATGATCGGTCGAATTGGAACATAACTCAGTAGACTATCTGGATACTTCACTTTGAAAAATGATACAAACTGGATACATCATATTTTAGCTGTAGATAATGGTTGATTAAAGTTTTGCTCTGTAAACCAAATTGTTGAAGCTTATGACTTCTAAATTAAAGAATTTGGACAAGCTGTAGTTGGTTTAGAAGTGATGCATGAACTCTATAAGTGAGCCTTGTTGAACCTTGTTACATAGTCAGATTGCTTAATCAGTATTTTAAGTTTATGGTTAAAGGCCAAAATCCATTTGGTTTAGTGGGTTCTTTATTGATTATTTATACATATTTAGTTCAACTTTTTTGACAGAGATATAGAGTGTTCTGGTGAACAGTTAGCTTCTATGGTGGATCTGCCCTTTGTTAGATTTACTTTTTAAAAGGAAATTGTTGTTTTGCTTTGTGGGATAAGTGAAGGAAAGAATGATCAGTGTTGAGCTTTCTTTCGATATCTATTTTGTTGTAATGTTAATTGCCTGGCCTTGCAGTCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGTCAGCTAAGCCTTGTGAGAAACACTTCAATGTTGATGATCACATAACTTTGTAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACTATC</genome_strand>
        <mrna_strand>CTGAATCCAAATCGCCTTCTCTGAACTCAATCTCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAAAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAG.......................................................................................AGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACTNTN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719676" ref_strand="+" ref_description="SGN-E719676 [FC08CC03]">
      <seq>ggcggccaaatcggccgaattgctctgaactcaatctcctccgtattcaacatcgccgtttcagcagaagtaacaaaaacaacaccatgtcgaaaaggaggactagggagccaaaggaagagactgttactcttggtccttctgtgagagagggagagcttgtttttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctcaaagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctctcagggctcttgctcgttcaggaatgaaaattggtcgtatagaggacgtgactccaattcctactgatagcactcgcaaaaagggtggtaggagaggacaaaggctgtaaggcttgttgagaatgctgcaggtgttatttttgatatggacttgaatcttattcacctctactatgtagttctactgatgttggctttgcctataaattttgcttcttttttcgtggttaaatttgtgaaacaattatgagaaatatgaattttagcctannaaanaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="43392" stop="39843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43086" g_stop="43020" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="89" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43019" i_stop="42218" i_length="802">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="209" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="255" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="341" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40587" g_stop="40458" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="471" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40457" i_stop="40371" i_length="87">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40370" g_stop="40141" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="701" r_length="230" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="702" polyA_stop="728"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E719676" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43086" e_stop="43020"/>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40458"/>
          <exon e_start="40370" e_stop="40141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGAACTCAATCTCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATGGTAATGAAATCTATCGAATATAATAGTTTTCCTTGAATATTGTGGATGAATTTGAGGTTATTTGCTGCTTTTATCTTTAGGATAGCTTCAATTTAATCCATAGAGTTACCTGGGTATGCTTAGATTAGTTATTCTTCTAGATTTCTGAAAAAAAGATTATATCTTTCCTAGTGAATATCTGTTTATCCTCTGTTATTGTTTTGATCTTGCTTAAAGACATGGTCCCCATTGTTTCTATCTCTTGCTTATAACATTTAGATATCAGTAGTTTAGAACAATGATCGGTCGAATTGGAACATAACTCAGTAGACTATCTGGATACTTCACTTTGAAAAATGATACAAACTGGATACATCATATTTTAGCTGTAGATAATGGTTGATTAAAGTTTTGCTCTGTAAACCAAATTGTTGAAGCTTATGACTTCTAAATTAAAGAATTTGGACAAGCTGTAGTTGGTTTAGAAGTGATGCATGAACTCTATAAGTGAGCCTTGTTGAACCTTGTTACATAGTCAGATTGCTTAATCAGTATTTTAAGTTTATGGTTAAAGGCCAAAATCCATTTGGTTTAGTGGGTTCTTTATTGATTATTTATACATATTTAGTTCAACTTTTTTGACAGAGATATAGAGTGTTCTGGTGAACAGTTAGCTTCTATGGTGGATCTGCCCTTTGTTAGATTTACTTTTTAAAAGGAAATTGTTGTTTTGCTTTGTGGGATAAGTGAAGGAAAGAATGATCAGTGTTGAGCTTTCTTTCGATATCTATTTTGTTGTAATGTTAATTGCCTGGCCTTGCAGTCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGTCAGCTAAGCCTTGTGAGAAACACTTCAATGTTGATGATCACATAACTTTGTAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACT</genome_strand>
        <mrna_strand>CTCTGAACTCAATCTCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAAAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAAAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAG.......................................................................................AGGACGTGACTCCAATTCCTACTGATAGCACTCGCAAAAAGGGTGGTAGGAGAGGACAAAGGCTGTAAGGCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTANN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347910" ref_strand="+" ref_description="SGN-E347910 [cTOF-31-K8]">
      <seq>aatctcctccgtattcaacatcgccgtttcagcagaagtaacaaaaacaacaccatgtcgaagaggaggactagggagccaaaggaagagactgttactcttggtccttctgtgagagagggagagcttgtttttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctctcagggctcttgctcgttcaggaatgaaaattggtcgtatagaggacgtgactccaattcctactgatagcactcgcagaaagggtggtaggagaggacgaaggctgtaaggttgcttgcttctcttgtcaagaaggagatgcagtttcttgttgagaatgctgcaggtgttatttttgatatggacttgaatcttattcacctctactatgtagttctactgatgttggctttgcctataaattttgcttcttttttcgtggttaaatttgtgaaacaattatgagaaatatgaattttagcctactaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="43376" stop="39840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43076" g_stop="43020" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43019" i_stop="42218" i_length="802">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="177" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="223" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="309" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40587" g_stop="40354" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="544" r_length="235" r_score="0.739"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40353" i_stop="40302" i_length="52">
            <donor d_prob="0.000" d_score="0.50"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40301" g_stop="40141" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="705" r_length="161" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="706" polyA_stop="716"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E347910" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43076" e_stop="43020"/>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40354"/>
          <exon e_start="40301" e_stop="40141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATGGTAATGAAATCTATCGAATATAATAGTTTTCCTTGAATATTGTGGATGAATTTGAGGTTATTTGCTGCTTTTATCTTTAGGATAGCTTCAATTTAATCCATAGAGTTACCTGGGTATGCTTAGATTAGTTATTCTTCTAGATTTCTGAAAAAAAGATTATATCTTTCCTAGTGAATATCTGTTTATCCTCTGTTATTGTTTTGATCTTGCTTAAAGACATGGTCCCCATTGTTTCTATCTCTTGCTTATAACATTTAGATATCAGTAGTTTAGAACAATGATCGGTCGAATTGGAACATAACTCAGTAGACTATCTGGATACTTCACTTTGAAAAATGATACAAACTGGATACATCATATTTTAGCTGTAGATAATGGTTGATTAAAGTTTTGCTCTGTAAACCAAATTGTTGAAGCTTATGACTTCTAAATTAAAGAATTTGGACAAGCTGTAGTTGGTTTAGAAGTGATGCATGAACTCTATAAGTGAGCCTTGTTGAACCTTGTTACATAGTCAGATTGCTTAATCAGTATTTTAAGTTTATGGTTAAAGGCCAAAATCCATTTGGTTTAGTGGGTTCTTTATTGATTATTTATACATATTTAGTTCAACTTTTTTGACAGAGATATAGAGTGTTCTGGTGAACAGTTAGCTTCTATGGTGGATCTGCCCTTTGTTAGATTTACTTTTTAAAAGGAAATTGTTGTTTTGCTTTGTGGGATAAGTGAAGGAAAGAATGATCAGTGTTGAGCTTTCTTTCGATATCTATTTTGTTGTAATGTTAATTGCCTGGCCTTGCAGTCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGT-CAGCTAAGCCTTGTGAGAAACACT--TCAATGTTGATGATCAC-ATAACTTTG-TAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACT</genome_strand>
        <mrna_strand>AATCTCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGAGGACG-TGA-CTCCAATTCCTACTGAT-AGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGTTGCTTGCTTCTCTTGTCAAGAAGGAGA-TGCAGTT....................................................TCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733734" ref_strand="+" ref_description="SGN-E733734 [LB10DC01]">
      <seq>cgctccgtattcaacatcgccgtttcagcagaagtaacaaaaacaacaccatgtcgaagaggaggactagggagccaaaggaagagactgttactcttggtccttctgtgagagagggagagcttgtttttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctctcagggctcttgctcgttcaggaatgaaaattggtcgtatagaggacgtgactccaattcctactgatagcactcgcagaaagggtggtaggagaggacgaaggctgtaaggcttgttgagaatgctgcaggtgttatttttgatatggacttgaatcttattcacctctactatgtagttctactgatgttggctttgcctataaattttgcttcttttttcgtggttaaatttgtgaaacaattatgagaaatatgaattttagcctactaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="43370" stop="39840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43072" g_stop="43020" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43019" i_stop="42218" i_length="802">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="173" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="219" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="305" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40587" g_stop="40458" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="435" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40457" i_stop="40371" i_length="87">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40370" g_stop="40141" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="665" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="666" polyA_stop="680"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E733734" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43072" e_stop="43020"/>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40458"/>
          <exon e_start="40370" e_stop="40141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATGGTAATGAAATCTATCGAATATAATAGTTTTCCTTGAATATTGTGGATGAATTTGAGGTTATTTGCTGCTTTTATCTTTAGGATAGCTTCAATTTAATCCATAGAGTTACCTGGGTATGCTTAGATTAGTTATTCTTCTAGATTTCTGAAAAAAAGATTATATCTTTCCTAGTGAATATCTGTTTATCCTCTGTTATTGTTTTGATCTTGCTTAAAGACATGGTCCCCATTGTTTCTATCTCTTGCTTATAACATTTAGATATCAGTAGTTTAGAACAATGATCGGTCGAATTGGAACATAACTCAGTAGACTATCTGGATACTTCACTTTGAAAAATGATACAAACTGGATACATCATATTTTAGCTGTAGATAATGGTTGATTAAAGTTTTGCTCTGTAAACCAAATTGTTGAAGCTTATGACTTCTAAATTAAAGAATTTGGACAAGCTGTAGTTGGTTTAGAAGTGATGCATGAACTCTATAAGTGAGCCTTGTTGAACCTTGTTACATAGTCAGATTGCTTAATCAGTATTTTAAGTTTATGGTTAAAGGCCAAAATCCATTTGGTTTAGTGGGTTCTTTATTGATTATTTATACATATTTAGTTCAACTTTTTTGACAGAGATATAGAGTGTTCTGGTGAACAGTTAGCTTCTATGGTGGATCTGCCCTTTGTTAGATTTACTTTTTAAAAGGAAATTGTTGTTTTGCTTTGTGGGATAAGTGAAGGAAAGAATGATCAGTGTTGAGCTTTCTTTCGATATCTATTTTGTTGTAATGTTAATTGCCTGGCCTTGCAGTCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGTCAGCTAAGCCTTGTGAGAAACACTTCAATGTTGATGATCACATAACTTTGTAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACT</genome_strand>
        <mrna_strand>CGCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAG.......................................................................................AGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733620" ref_strand="+" ref_description="SGN-E733620 [LB10CA06]">
      <seq>ctccgtattcaacatcgccgtttcagcagaagtaacaaaaacaacaccatgtcgaagaggaggactagggagccaaaggaagagactgttactcttggtccttctgtgagagagggagagcttgtttttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctctcagggctcttgctcgttcaggaatgaaaattggtcgtatagaggacgtgactccaattcctactgatagcactcgcagaaagggtggtaggagaggacgaaggctgtaaggcttgttgagaatgctgcaggtgttatttttgatatggacttgaatcttattcacctctactatgtagttctactgatgttggctttgcctataaattttgcttcttttttcgtggttaaatttgtgaaacaattatgagaaatatgaattttagcctactaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="43370" stop="39840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43070" g_stop="43020" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43019" i_stop="42218" i_length="802">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="171" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="217" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="303" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40587" g_stop="40458" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="433" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40457" i_stop="40371" i_length="87">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40370" g_stop="40141" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="663" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="664" polyA_stop="678"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E733620" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43070" e_stop="43020"/>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40458"/>
          <exon e_start="40370" e_stop="40141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATGGTAATGAAATCTATCGAATATAATAGTTTTCCTTGAATATTGTGGATGAATTTGAGGTTATTTGCTGCTTTTATCTTTAGGATAGCTTCAATTTAATCCATAGAGTTACCTGGGTATGCTTAGATTAGTTATTCTTCTAGATTTCTGAAAAAAAGATTATATCTTTCCTAGTGAATATCTGTTTATCCTCTGTTATTGTTTTGATCTTGCTTAAAGACATGGTCCCCATTGTTTCTATCTCTTGCTTATAACATTTAGATATCAGTAGTTTAGAACAATGATCGGTCGAATTGGAACATAACTCAGTAGACTATCTGGATACTTCACTTTGAAAAATGATACAAACTGGATACATCATATTTTAGCTGTAGATAATGGTTGATTAAAGTTTTGCTCTGTAAACCAAATTGTTGAAGCTTATGACTTCTAAATTAAAGAATTTGGACAAGCTGTAGTTGGTTTAGAAGTGATGCATGAACTCTATAAGTGAGCCTTGTTGAACCTTGTTACATAGTCAGATTGCTTAATCAGTATTTTAAGTTTATGGTTAAAGGCCAAAATCCATTTGGTTTAGTGGGTTCTTTATTGATTATTTATACATATTTAGTTCAACTTTTTTGACAGAGATATAGAGTGTTCTGGTGAACAGTTAGCTTCTATGGTGGATCTGCCCTTTGTTAGATTTACTTTTTAAAAGGAAATTGTTGTTTTGCTTTGTGGGATAAGTGAAGGAAAGAATGATCAGTGTTGAGCTTTCTTTCGATATCTATTTTGTTGTAATGTTAATTGCCTGGCCTTGCAGTCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGTCAGCTAAGCCTTGTGAGAAACACTTCAATGTTGATGATCACATAACTTTGTAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACT</genome_strand>
        <mrna_strand>CTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAG.......................................................................................AGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733132" ref_strand="+" ref_description="SGN-E733132 [LB04AC04]">
      <seq>cagtagtaacaaaaacaacaccatgtcgaagaggaggactagggagccaaaggaagagactgttactcttggtccttctgtgagagagggagagcttgtttttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctctcagggctcttgctcgttcaggaatgaaaattggtcgtatagaggacgtgactccaattcctactgatagcactcgcagaaagggtggtaggagaggacgaaggctgtaaggcttgttgagaatgctgcaggtgttatttttgatatggacttgaatcttattcacctctactatgtagttctactgatgttggctttgcctataaattttgcttcttttttcgtggttaaatttgtgaaacaattatgagaaatatgaattttagcctactaaaaannaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="43344" stop="39840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43044" g_stop="43020" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43019" i_stop="42218" i_length="802">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="145" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="191" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="277" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40587" g_stop="40458" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="407" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40457" i_stop="40371" i_length="87">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40370" g_stop="40141" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="637" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="645" polyA_stop="659"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E733132" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43044" e_stop="43020"/>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40458"/>
          <exon e_start="40370" e_stop="40141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGTAACAAAAACAACACCATGGTAATGAAATCTATCGAATATAATAGTTTTCCTTGAATATTGTGGATGAATTTGAGGTTATTTGCTGCTTTTATCTTTAGGATAGCTTCAATTTAATCCATAGAGTTACCTGGGTATGCTTAGATTAGTTATTCTTCTAGATTTCTGAAAAAAAGATTATATCTTTCCTAGTGAATATCTGTTTATCCTCTGTTATTGTTTTGATCTTGCTTAAAGACATGGTCCCCATTGTTTCTATCTCTTGCTTATAACATTTAGATATCAGTAGTTTAGAACAATGATCGGTCGAATTGGAACATAACTCAGTAGACTATCTGGATACTTCACTTTGAAAAATGATACAAACTGGATACATCATATTTTAGCTGTAGATAATGGTTGATTAAAGTTTTGCTCTGTAAACCAAATTGTTGAAGCTTATGACTTCTAAATTAAAGAATTTGGACAAGCTGTAGTTGGTTTAGAAGTGATGCATGAACTCTATAAGTGAGCCTTGTTGAACCTTGTTACATAGTCAGATTGCTTAATCAGTATTTTAAGTTTATGGTTAAAGGCCAAAATCCATTTGGTTTAGTGGGTTCTTTATTGATTATTTATACATATTTAGTTCAACTTTTTTGACAGAGATATAGAGTGTTCTGGTGAACAGTTAGCTTCTATGGTGGATCTGCCCTTTGTTAGATTTACTTTTTAAAAGGAAATTGTTGTTTTGCTTTGTGGGATAAGTGAAGGAAAGAATGATCAGTGTTGAGCTTTCTTTCGATATCTATTTTGTTGTAATGTTAATTGCCTGGCCTTGCAGTCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGTCAGCTAAGCCTTGTGAGAAACACTTCAATGTTGATGATCACATAACTTTGTAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACT</genome_strand>
        <mrna_strand>CAGTAGTAACAAAAACAACACCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAG.......................................................................................AGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713722" ref_strand="+" ref_description="SGN-E713722 [FB09BH03]">
      <seq>caaaaacaacaccatgtcgaagaggaggactagggagccaaaggaagagactgttactcttggtccttctgtgagagagggagagcttgtttttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctctcagggctcttgctcgttcaggaatgaaaattggtcgtatagaggacgtgactccaattcctactgatagcactcgcagaaagggtggtaggagaggacgaaggctgtaaggcttgttgagaatgctgcaggtgttatttttgatatggacttgaatcttattcacctctactatgtagttctactgatgttggctttgcctataaattttgcttcttttttcgtggttaaatttgtgaaacaattatgagaaatatgaattttagcctactaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="42520" stop="39840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="136" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="182" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="268" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40587" g_stop="40458" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="398" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40457" i_stop="40371" i_length="87">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40370" g_stop="40141" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="628" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="629" polyA_stop="643"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E713722" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40458"/>
          <exon e_start="40370" e_stop="40141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGTCAGCTAAGCCTTGTGAGAAACACTTCAATGTTGATGATCACATAACTTTGTAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACT</genome_strand>
        <mrna_strand>TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAG.......................................................................................AGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370679" ref_strand="+" ref_description="SGN-E370679 [TUS-28-B6]">
      <seq>tcctccgtattcaacatcgccgtttcagcagaagtaacaaaaacaacaccatgtcgaagaggaggactagggagccaaaggaagagactgttactcttggtccttctgtgagagagggagagcttgtttttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctctcagggctcttgctcattcaggaatgaaaattggtcgtatagaggacgtgactccaattcctactgatagcactcgcagaaagggtggtaggagaggacgaaggctgtaaggttgcttgcttctcttgtcaagaaggagatgcagtttcttgttgagaatgctgcaggtgttatttttgatatggacttgaatcttattcacctctactatgtagttctactgatgttggctttgcctataaattttgcttcttttttcgtggttaaattgtgaaacaattatgagaaatatgaattttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="43372" stop="39847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43072" g_stop="43020" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43019" i_stop="42218" i_length="802">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="173" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="219" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="305" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40587" g_stop="40354" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="540" r_length="235" r_score="0.735"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40353" i_stop="40302" i_length="52">
            <donor d_prob="0.000" d_score="0.50"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40301" g_stop="40147" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="694" r_length="154" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E370679" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43072" e_stop="43020"/>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40354"/>
          <exon e_start="40301" e_stop="40147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATGGTAATGAAATCTATCGAATATAATAGTTTTCCTTGAATATTGTGGATGAATTTGAGGTTATTTGCTGCTTTTATCTTTAGGATAGCTTCAATTTAATCCATAGAGTTACCTGGGTATGCTTAGATTAGTTATTCTTCTAGATTTCTGAAAAAAAGATTATATCTTTCCTAGTGAATATCTGTTTATCCTCTGTTATTGTTTTGATCTTGCTTAAAGACATGGTCCCCATTGTTTCTATCTCTTGCTTATAACATTTAGATATCAGTAGTTTAGAACAATGATCGGTCGAATTGGAACATAACTCAGTAGACTATCTGGATACTTCACTTTGAAAAATGATACAAACTGGATACATCATATTTTAGCTGTAGATAATGGTTGATTAAAGTTTTGCTCTGTAAACCAAATTGTTGAAGCTTATGACTTCTAAATTAAAGAATTTGGACAAGCTGTAGTTGGTTTAGAAGTGATGCATGAACTCTATAAGTGAGCCTTGTTGAACCTTGTTACATAGTCAGATTGCTTAATCAGTATTTTAAGTTTATGGTTAAAGGCCAAAATCCATTTGGTTTAGTGGGTTCTTTATTGATTATTTATACATATTTAGTTCAACTTTTTTGACAGAGATATAGAGTGTTCTGGTGAACAGTTAGCTTCTATGGTGGATCTGCCCTTTGTTAGATTTACTTTTTAAAAGGAAATTGTTGTTTTGCTTTGTGGGATAAGTGAAGGAAAGAATGATCAGTGTTGAGCTTTCTTTCGATATCTATTTTGTTGTAATGTTAATTGCCTGGCCTTGCAGTCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGT-CAGCTAAGCCTTGTGAGAAACACT--TCAATGTTGATGATCAC-ATAACTTTG-TAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAG</genome_strand>
        <mrna_strand>TCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCATTCAGGAATGAAAATTGGTCGTATAGAGGACG-TGA-CTCCAATTCCTACTGAT-AGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGTTGCTTGCTTCTCTTGTCAAGAAGGAGA-TGCAGTT....................................................TCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAA-TTGTGAAACAATTATGAGAAATATGAATTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711516" ref_strand="+" ref_description="SGN-E711516 [FB02AH05]">
      <seq>ccataaacacaccatgtcgaagaggaggactagggagccaacggaagagactgttactcttggtccttctgtgagagagggagagcttgtttttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctctcagggctcttgctcgttcaggaatgaaaattggtcgtatagaggacgtgactccaattcctactgatagcactcgcagaaagggtggtaggagaggacgaaggctgtaaggcttgttgagaatgctgcaggtgttatttttgatatggacttgaatcttattcacctctactatgtagttctactgatgttggctttgcctataaattttgcttcttttttcgtggttaaatttgtgaaacaattatgagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="42520" stop="39853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="136" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="182" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="268" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40587" g_stop="40458" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="398" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40457" i_stop="40371" i_length="87">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40370" g_stop="40152" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="617" r_length="219" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E711516" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40458"/>
          <exon e_start="40370" e_stop="40152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGTCAGCTAAGCCTTGTGAGAAACACTTCAATGTTGATGATCACATAACTTTGTAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAAT</genome_strand>
        <mrna_strand>TCGAAGAGGAGGACTAGGGAGCCAACGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAG.......................................................................................AGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E584122" ref_strand="+" ref_description="SGN-E584122 [9943]">
      <seq>aagagaccgtcactcttggtccttctgtgagagagggagagcttgttttcggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtgggatgaaggtctgagctgatagggatgaatcttccccatatgctgctatgcttgctgcaacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaatacatctggacctggtgctcagtctgctctcagggctcttgctcgttcaggaatgaaaattggtcgtatagaggacgtgactccaattcctactgatatcactcgcagaaagggtggtaggagaggaagaaggctgtaagcttgctgcttttgtccagaatcaaatgcgggttcttgttgagaatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="42489" stop="39994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42189" g_stop="42098" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="138" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="225" r_length="87" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40587" g_stop="40458" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="355" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40457" i_stop="40371" i_length="87">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40370" g_stop="40282" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="442" r_length="87" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E584122" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42189" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40458"/>
          <exon e_start="40370" e_stop="40282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGC-ACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGTCAGCTAAGCCTTGTGAGAAACACTTCAATGTTGATGATCACATAACTTTGTAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAGAATGCTGCAG</genome_strand>
        <mrna_strand>AAGAGACCGTCACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTCGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGATGAAGGTCTGAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCTGCAACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAATACATCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAG.......................................................................................AGGACGTGACTCCAATTCCTACTGATATCACTCGCAGAAAGGGTGGTAGGAGAGGAAGAAGGCTGTAA-GCTTGCTGCTTTTG-TCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340574" ref_strand="+" ref_description="SGN-E340574 [cTOF-1-E9]">
      <seq>ccatgtcgaagaggaggactagggagccaaaggaagagactgttactcttggtccttctgtgagagagggagagcttgtgtttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctctcagggctcttgctcgttcaggaatgaaaattggtcgtatagaggacgtgactccaattcctactgattgcactcgcagaaagggtggtaggagaggaccaaggctgtaaggttgcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="42520" stop="39994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="125" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="171" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="257" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40587" g_stop="40458" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="387" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40457" i_stop="40371" i_length="87">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40370" g_stop="40292" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="466" r_length="79" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E340574" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40458"/>
          <exon e_start="40370" e_stop="40292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGTCAGCTAAGCCTTGTGAGAAACACTTCAATGTTGATGATCACATAACTTTGTAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAG</genome_strand>
        <mrna_strand>TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTGTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAG.......................................................................................AGGACGTGACTCCAATTCCTACTGATTGCACTCGCAGAAAGGGTGGTAGGAGAGGACCAAGGCTGTAAGGTTGCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466925" ref_strand="+" ref_description="SGN-E466925 [cPRO-26-D1]">
      <seq>tttcagcagaagtctcatcagcaacaacaccatgtcgaagaggagaactagggagccaaaggaagagaccgtcactcttggtccttctgtgagagagggagagcttgttttcggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtgggatgaaggtcaaagctgacagggatgaatcttccccatatgctgctatgcttgctgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctctcagggctcttgctcgttcaggaatgaaaattggtcgtatagaggacgtgactccaattcctactgatagcactcgcagaaagggtggtangagaggaagaaggctgtaagcttgctgcttttgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="42520" stop="39994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="154" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="200" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="286" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40587" g_stop="40458" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="416" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40457" i_stop="40371" i_length="87">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40370" g_stop="40302" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="485" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E466925" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40458"/>
          <exon e_start="40370" e_stop="40302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGTCAGCTAAGCCTTGTGAGAAACACTTCAATGTTGATGATCACATAACTTTGTAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAG</genome_strand>
        <mrna_strand>TCGAAGAGGAGAACTAGGGAGCCAAAGGAAGAGACCGTCACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTCGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGATGAAGGTCAAAGCTGACAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCTGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAG.......................................................................................AGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTANGAGAGGAAGAAGGCTGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293600" ref_strand="+" ref_description="SGN-E293600 [cLET-15-B22]">
      <seq>gcagctgaatccaaatcgccttctctgaactcaatctcctccgtattcaacatcgccgtttcagcagaagtaacaaaaacaacaccatgtcgaagaggaggactagggagccaaaggaagagactgttactcttggtccttctgtgagagagggagagcttgtttttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctctcagggctcttgctcgttcaggaatgaaaattggtcgtatagaggacgtgactccaattcctactgatagcactcgcagaaagggtggtaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="43408" stop="40019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43108" g_stop="43020" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43019" i_stop="42218" i_length="802">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="209" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="255" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="341" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40587" g_stop="40458" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="471" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40457" i_stop="40371" i_length="87">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40370" g_stop="40319" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="523" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E293600" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43108" e_stop="43020"/>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40458"/>
          <exon e_start="40370" e_stop="40319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTGAATCCAAATCGCCTTCTCTGAACTCAATCTCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATGGTAATGAAATCTATCGAATATAATAGTTTTCCTTGAATATTGTGGATGAATTTGAGGTTATTTGCTGCTTTTATCTTTAGGATAGCTTCAATTTAATCCATAGAGTTACCTGGGTATGCTTAGATTAGTTATTCTTCTAGATTTCTGAAAAAAAGATTATATCTTTCCTAGTGAATATCTGTTTATCCTCTGTTATTGTTTTGATCTTGCTTAAAGACATGGTCCCCATTGTTTCTATCTCTTGCTTATAACATTTAGATATCAGTAGTTTAGAACAATGATCGGTCGAATTGGAACATAACTCAGTAGACTATCTGGATACTTCACTTTGAAAAATGATACAAACTGGATACATCATATTTTAGCTGTAGATAATGGTTGATTAAAGTTTTGCTCTGTAAACCAAATTGTTGAAGCTTATGACTTCTAAATTAAAGAATTTGGACAAGCTGTAGTTGGTTTAGAAGTGATGCATGAACTCTATAAGTGAGCCTTGTTGAACCTTGTTACATAGTCAGATTGCTTAATCAGTATTTTAAGTTTATGGTTAAAGGCCAAAATCCATTTGGTTTAGTGGGTTCTTTATTGATTATTTATACATATTTAGTTCAACTTTTTTGACAGAGATATAGAGTGTTCTGGTGAACAGTTAGCTTCTATGGTGGATCTGCCCTTTGTTAGATTTACTTTTTAAAAGGAAATTGTTGTTTTGCTTTGTGGGATAAGTGAAGGAAAGAATGATCAGTGTTGAGCTTTCTTTCGATATCTATTTTGTTGTAATGTTAATTGCCTGGCCTTGCAGTCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGTCAGCTAAGCCTTGTGAGAAACACTTCAATGTTGATGATCACATAACTTTGTAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAG</genome_strand>
        <mrna_strand>GCAGCTGAATCCAAATCGCCTTCTCTGAACTCAATCTCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAG.......................................................................................AGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336564" ref_strand="+" ref_description="SGN-E336564 [cTOE-4-K17]">
      <seq>aacatcgccgtttcagcagaagtaacaaaaacaacaccatgtcgaagaggaggactagggagccaaaggaagagactgttactcttggtccttctgtgagagagggagagcttgtttttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctctcagggctcttgctcgttcaggaatgaaaattggtcgtatagaggacgtgactccaattcctactgatagcactcgcagaaagggtggtaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="43360" stop="40019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43060" g_stop="43020" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43019" i_stop="42218" i_length="802">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="161" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="207" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="293" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40587" g_stop="40458" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="423" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40457" i_stop="40371" i_length="87">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40370" g_stop="40319" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="475" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E336564" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43060" e_stop="43020"/>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40458"/>
          <exon e_start="40370" e_stop="40319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATGGTAATGAAATCTATCGAATATAATAGTTTTCCTTGAATATTGTGGATGAATTTGAGGTTATTTGCTGCTTTTATCTTTAGGATAGCTTCAATTTAATCCATAGAGTTACCTGGGTATGCTTAGATTAGTTATTCTTCTAGATTTCTGAAAAAAAGATTATATCTTTCCTAGTGAATATCTGTTTATCCTCTGTTATTGTTTTGATCTTGCTTAAAGACATGGTCCCCATTGTTTCTATCTCTTGCTTATAACATTTAGATATCAGTAGTTTAGAACAATGATCGGTCGAATTGGAACATAACTCAGTAGACTATCTGGATACTTCACTTTGAAAAATGATACAAACTGGATACATCATATTTTAGCTGTAGATAATGGTTGATTAAAGTTTTGCTCTGTAAACCAAATTGTTGAAGCTTATGACTTCTAAATTAAAGAATTTGGACAAGCTGTAGTTGGTTTAGAAGTGATGCATGAACTCTATAAGTGAGCCTTGTTGAACCTTGTTACATAGTCAGATTGCTTAATCAGTATTTTAAGTTTATGGTTAAAGGCCAAAATCCATTTGGTTTAGTGGGTTCTTTATTGATTATTTATACATATTTAGTTCAACTTTTTTGACAGAGATATAGAGTGTTCTGGTGAACAGTTAGCTTCTATGGTGGATCTGCCCTTTGTTAGATTTACTTTTTAAAAGGAAATTGTTGTTTTGCTTTGTGGGATAAGTGAAGGAAAGAATGATCAGTGTTGAGCTTTCTTTCGATATCTATTTTGTTGTAATGTTAATTGCCTGGCCTTGCAGTCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGTCAGCTAAGCCTTGTGAGAAACACTTCAATGTTGATGATCACATAACTTTGTAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAG</genome_strand>
        <mrna_strand>AACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAG.......................................................................................AGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E584231" ref_strand="+" ref_description="SGN-E584231 [10052]">
      <seq>tccgaattgaacaccgccgtttcagcagaagtctcatcagcaacaacaccatgtcgaagaggagaactagggagccaaaggaagagaccgtcactcttggtccttctgtgagagagggagagcttgttttcggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtgggatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgctgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctctcagggctcttgctcgttcaggaatgaaaattggtcgtatagaggacgtgactccaattcctactgataggcactcgcagaacagggtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="43369" stop="40024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43069" g_stop="43020" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.760"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43019" i_stop="42218" i_length="802">
            <donor d_prob="0.993" d_score="0.74"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="173" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="219" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="305" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40587" g_stop="40458" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="435" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40457" i_stop="40371" i_length="87">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40370" g_stop="40324" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="484" r_length="49" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E584231" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43069" e_stop="43020"/>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40458"/>
          <exon e_start="40370" e_stop="40324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTATTCAACATCGCCGTTTCAGCAGAAG--TAA-CAAAAACAACACCATGGTAATGAAATCTATCGAATATAATAGTTTTCCTTGAATATTGTGGATGAATTTGAGGTTATTTGCTGCTTTTATCTTTAGGATAGCTTCAATTTAATCCATAGAGTTACCTGGGTATGCTTAGATTAGTTATTCTTCTAGATTTCTGAAAAAAAGATTATATCTTTCCTAGTGAATATCTGTTTATCCTCTGTTATTGTTTTGATCTTGCTTAAAGACATGGTCCCCATTGTTTCTATCTCTTGCTTATAACATTTAGATATCAGTAGTTTAGAACAATGATCGGTCGAATTGGAACATAACTCAGTAGACTATCTGGATACTTCACTTTGAAAAATGATACAAACTGGATACATCATATTTTAGCTGTAGATAATGGTTGATTAAAGTTTTGCTCTGTAAACCAAATTGTTGAAGCTTATGACTTCTAAATTAAAGAATTTGGACAAGCTGTAGTTGGTTTAGAAGTGATGCATGAACTCTATAAGTGAGCCTTGTTGAACCTTGTTACATAGTCAGATTGCTTAATCAGTATTTTAAGTTTATGGTTAAAGGCCAAAATCCATTTGGTTTAGTGGGTTCTTTATTGATTATTTATACATATTTAGTTCAACTTTTTTGACAGAGATATAGAGTGTTCTGGTGAACAGTTAGCTTCTATGGTGGATCTGCCCTTTGTTAGATTTACTTTTTAAAAGGAAATTGTTGTTTTGCTTTGTGGGATAAGTGAAGGAAAGAATGATCAGTGTTGAGCTTTCTTTCGATATCTATTTTGTTGTAATGTTAATTGCCTGGCCTTGCAGTCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGTCAGCTAAGCCTTGTGAGAAACACTTCAATGTTGATGATCACATAACTTTGTAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATA-GCACTCGCAGAA-AGGGTGGT</genome_strand>
        <mrna_strand>TCCGAATTGAACACCGCCGTTTCAGCAGAAGTCTCATCAGCAACAACACCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGAGGAGAACTAGGGAGCCAAAGGAAGAGACCGTCACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTCGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCTGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAG.......................................................................................AGGACGTGACTCCAATTCCTACTGATAGGCACTCGCAGAACAGGGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304615" ref_strand="+" ref_description="SGN-E304615 [cLEX-11-J14]">
      <seq>aacatcgccgtttcagcagaagtaacaaaaacaacaccatgtcgaagaggaggactagggagccaaaggaagagactgttactcttggtccttctgtgagagagggagagcttgtttttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctctcagggctcttgctcgttcaggaatgaaaattggtcgtatagaggacgtgactccaattcctactgatagcactcgcagaaagggtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="43360" stop="40024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43060" g_stop="43020" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43019" i_stop="42218" i_length="802">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="161" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="207" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="293" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40587" g_stop="40458" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="423" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40457" i_stop="40371" i_length="87">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40370" g_stop="40324" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="470" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E304615" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43060" e_stop="43020"/>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40458"/>
          <exon e_start="40370" e_stop="40324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATGGTAATGAAATCTATCGAATATAATAGTTTTCCTTGAATATTGTGGATGAATTTGAGGTTATTTGCTGCTTTTATCTTTAGGATAGCTTCAATTTAATCCATAGAGTTACCTGGGTATGCTTAGATTAGTTATTCTTCTAGATTTCTGAAAAAAAGATTATATCTTTCCTAGTGAATATCTGTTTATCCTCTGTTATTGTTTTGATCTTGCTTAAAGACATGGTCCCCATTGTTTCTATCTCTTGCTTATAACATTTAGATATCAGTAGTTTAGAACAATGATCGGTCGAATTGGAACATAACTCAGTAGACTATCTGGATACTTCACTTTGAAAAATGATACAAACTGGATACATCATATTTTAGCTGTAGATAATGGTTGATTAAAGTTTTGCTCTGTAAACCAAATTGTTGAAGCTTATGACTTCTAAATTAAAGAATTTGGACAAGCTGTAGTTGGTTTAGAAGTGATGCATGAACTCTATAAGTGAGCCTTGTTGAACCTTGTTACATAGTCAGATTGCTTAATCAGTATTTTAAGTTTATGGTTAAAGGCCAAAATCCATTTGGTTTAGTGGGTTCTTTATTGATTATTTATACATATTTAGTTCAACTTTTTTGACAGAGATATAGAGTGTTCTGGTGAACAGTTAGCTTCTATGGTGGATCTGCCCTTTGTTAGATTTACTTTTTAAAAGGAAATTGTTGTTTTGCTTTGTGGGATAAGTGAAGGAAAGAATGATCAGTGTTGAGCTTTCTTTCGATATCTATTTTGTTGTAATGTTAATTGCCTGGCCTTGCAGTCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGTCAGCTAAGCCTTGTGAGAAACACTTCAATGTTGATGATCACATAACTTTGTAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGT</genome_strand>
        <mrna_strand>AACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAG.......................................................................................AGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310551" ref_strand="+" ref_description="SGN-E310551 [cLEZ-19-G20]">
      <seq>aacatcgccgtttcaccaggggtgacggaaacaacaccgtgtcgaagaggangactagggagccaaaggaagagactgttactcttggtccttctgtgagagagggagagcttgtttttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagctttgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctctcagggctcttgctcgttcaggaatgaaaattggtcgtatagaggacgtgactccaattcctactgatagcactcgcagaaagggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="42518" stop="40025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="161" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="207" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="293" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40587" g_stop="40458" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="423" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40457" i_stop="40371" i_length="87">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40370" g_stop="40325" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="469" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E310551" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40458"/>
          <exon e_start="40370" e_stop="40325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGTCAGCTAAGCCTTGTGAGAAACACTTCAATGTTGATGATCACATAACTTTGTAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGG</genome_strand>
        <mrna_strand>TCGAAGAGGANGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTTGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAG.......................................................................................AGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339768" ref_strand="+" ref_description="SGN-E339768 [cTOE-16-B22]">
      <seq>ctgaatccaaatcgccttctctgaactcaatctcctccgtattcaacatcgccgtttcagcagaagtaacaaaaacaacaccatgtcgaagaggaggactagggagccaaaggaagagactgttactcttggtccttctgtgagagagggagagcttgtttttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctctcagggctcttgctcgttcaggaatgaaaattggtcgtatagaggacgtgactccaattcctactgatagcactcgcagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="43404" stop="40032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43104" g_stop="43020" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43019" i_stop="42218" i_length="802">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="205" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="251" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="337" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40587" g_stop="40458" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="467" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40457" i_stop="40371" i_length="87">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40370" g_stop="40332" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="506" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E339768" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43104" e_stop="43020"/>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40458"/>
          <exon e_start="40370" e_stop="40332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATCCAAATCGCCTTCTCTGAACTCAATCTCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATGGTAATGAAATCTATCGAATATAATAGTTTTCCTTGAATATTGTGGATGAATTTGAGGTTATTTGCTGCTTTTATCTTTAGGATAGCTTCAATTTAATCCATAGAGTTACCTGGGTATGCTTAGATTAGTTATTCTTCTAGATTTCTGAAAAAAAGATTATATCTTTCCTAGTGAATATCTGTTTATCCTCTGTTATTGTTTTGATCTTGCTTAAAGACATGGTCCCCATTGTTTCTATCTCTTGCTTATAACATTTAGATATCAGTAGTTTAGAACAATGATCGGTCGAATTGGAACATAACTCAGTAGACTATCTGGATACTTCACTTTGAAAAATGATACAAACTGGATACATCATATTTTAGCTGTAGATAATGGTTGATTAAAGTTTTGCTCTGTAAACCAAATTGTTGAAGCTTATGACTTCTAAATTAAAGAATTTGGACAAGCTGTAGTTGGTTTAGAAGTGATGCATGAACTCTATAAGTGAGCCTTGTTGAACCTTGTTACATAGTCAGATTGCTTAATCAGTATTTTAAGTTTATGGTTAAAGGCCAAAATCCATTTGGTTTAGTGGGTTCTTTATTGATTATTTATACATATTTAGTTCAACTTTTTTGACAGAGATATAGAGTGTTCTGGTGAACAGTTAGCTTCTATGGTGGATCTGCCCTTTGTTAGATTTACTTTTTAAAAGGAAATTGTTGTTTTGCTTTGTGGGATAAGTGAAGGAAAGAATGATCAGTGTTGAGCTTTCTTTCGATATCTATTTTGTTGTAATGTTAATTGCCTGGCCTTGCAGTCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGTCAGCTAAGCCTTGTGAGAAACACTTCAATGTTGATGATCACATAACTTTGTAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAA</genome_strand>
        <mrna_strand>CTGAATCCAAATCGCCTTCTCTGAACTCAATCTCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAG.......................................................................................AGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274353" ref_strand="+" ref_description="SGN-E274353 [cLEN-15-J22]">
      <seq>tttttgagttcaggagcttggcatcaatgcacttcacatgaagcttcgagccactggtggaaacaaccaccaaaacacctggacctggtgctcagtctgctctcagggctcttgctcgttcaggaatgaaaattggtcgcataggtaatgattagcttttgtgtgtcagctaagccttgtgagaaacacttcaatgttgatgatcacataactttgtaaattatcttgcagaggacgtgactccaattcctactgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="40900" stop="40044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40600" g_stop="40344" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E274353" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40600" e_stop="40344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAA-GACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGTCAGCTAAGCCTTGTGAGAAACACTTCAATGTTGATGATCACATAACTTTGTAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATA</genome_strand>
        <mrna_strand>TTTTTGAGTTCAGGAGCTTGGCATCAATGCACTTCACATGAAGCTTCGAGCCACTGGTGGAAACAACCACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGCATAGGTAATGATTAGCTTTTGTGTGTCAGCTAAGCCTTGTGAGAAACACTTCAATGTTGATGATCACATAACTTTGTAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445628" ref_strand="+" ref_description="SGN-E445628 [cSTA-16-D6]">
      <seq>cgccgtttcagcagaagtctcatcagcaacaacaccatgtcgaagaggagaactagggagccaaaggaagagaccgtcactcttggtccttctgtgagagagggagagcttgttttcggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtgggatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgctgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctctcagggctcttgctcgttcaggaatgaaaattggtcgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="43355" stop="40160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43055" g_stop="43020" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43019" i_stop="42218" i_length="802">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="159" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="205" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="291" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40587" g_stop="40460" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="419" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E445628" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43055" e_stop="43020"/>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGTTTCAGCAGAAG--T-AACAAAAACAACACCATGGTAATGAAATCTATCGAATATAATAGTTTTCCTTGAATATTGTGGATGAATTTGAGGTTATTTGCTGCTTTTATCTTTAGGATAGCTTCAATTTAATCCATAGAGTTACCTGGGTATGCTTAGATTAGTTATTCTTCTAGATTTCTGAAAAAAAGATTATATCTTTCCTAGTGAATATCTGTTTATCCTCTGTTATTGTTTTGATCTTGCTTAAAGACATGGTCCCCATTGTTTCTATCTCTTGCTTATAACATTTAGATATCAGTAGTTTAGAACAATGATCGGTCGAATTGGAACATAACTCAGTAGACTATCTGGATACTTCACTTTGAAAAATGATACAAACTGGATACATCATATTTTAGCTGTAGATAATGGTTGATTAAAGTTTTGCTCTGTAAACCAAATTGTTGAAGCTTATGACTTCTAAATTAAAGAATTTGGACAAGCTGTAGTTGGTTTAGAAGTGATGCATGAACTCTATAAGTGAGCCTTGTTGAACCTTGTTACATAGTCAGATTGCTTAATCAGTATTTTAAGTTTATGGTTAAAGGCCAAAATCCATTTGGTTTAGTGGGTTCTTTATTGATTATTTATACATATTTAGTTCAACTTTTTTGACAGAGATATAGAGTGTTCTGGTGAACAGTTAGCTTCTATGGTGGATCTGCCCTTTGTTAGATTTACTTTTTAAAAGGAAATTGTTGTTTTGCTTTGTGGGATAAGTGAAGGAAAGAATGATCAGTGTTGAGCTTTCTTTCGATATCTATTTTGTTGTAATGTTAATTGCCTGGCCTTGCAGTCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTAT</genome_strand>
        <mrna_strand>CGCCGTTTCAGCAGAAGTCTCATCAGCAACAACACCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGAGGAGAACTAGGGAGCCAAAGGAAGAGACCGTCACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTCGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCTGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239914" ref_strand="+" ref_description="SGN-E239914 [cLED-29-K15]">
      <seq>aatcgccttctctgaactcaatctcctccgtattcaacatcgccgtttcagcagaagtaacaaaaacaacaccatgtcgaagaggaggactagggagccaaaggaagagactgttactcttggtccttctgtgagagagggagagcttgtttttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctctcaaggctcttgctcgttcaggaatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="43395" stop="40170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43095" g_stop="43020" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43019" i_stop="42218" i_length="802">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="196" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="242" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="328" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40587" g_stop="40470" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="446" r_length="118" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E239914" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43095" e_stop="43020"/>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGCCTTCTCTGAACTCAATCTCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATGGTAATGAAATCTATCGAATATAATAGTTTTCCTTGAATATTGTGGATGAATTTGAGGTTATTTGCTGCTTTTATCTTTAGGATAGCTTCAATTTAATCCATAGAGTTACCTGGGTATGCTTAGATTAGTTATTCTTCTAGATTTCTGAAAAAAAGATTATATCTTTCCTAGTGAATATCTGTTTATCCTCTGTTATTGTTTTGATCTTGCTTAAAGACATGGTCCCCATTGTTTCTATCTCTTGCTTATAACATTTAGATATCAGTAGTTTAGAACAATGATCGGTCGAATTGGAACATAACTCAGTAGACTATCTGGATACTTCACTTTGAAAAATGATACAAACTGGATACATCATATTTTAGCTGTAGATAATGGTTGATTAAAGTTTTGCTCTGTAAACCAAATTGTTGAAGCTTATGACTTCTAAATTAAAGAATTTGGACAAGCTGTAGTTGGTTTAGAAGTGATGCATGAACTCTATAAGTGAGCCTTGTTGAACCTTGTTACATAGTCAGATTGCTTAATCAGTATTTTAAGTTTATGGTTAAAGGCCAAAATCCATTTGGTTTAGTGGGTTCTTTATTGATTATTTATACATATTTAGTTCAACTTTTTTGACAGAGATATAGAGTGTTCTGGTGAACAGTTAGCTTCTATGGTGGATCTGCCCTTTGTTAGATTTACTTTTTAAAAGGAAATTGTTGTTTTGCTTTGTGGGATAAGTGAAGGAAAGAATGATCAGTGTTGAGCTTTCTTTCGATATCTATTTTGTTGTAATGTTAATTGCCTGGCCTTGCAGTCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAA</genome_strand>
        <mrna_strand>AATCGCCTTCTCTGAACTCAATCTCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAAGGCTCTTGCTCGTTCAGGAATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337471" ref_strand="+" ref_description="SGN-E337471 [cTOE-11-D13]">
      <seq>agacatagtaaggattgacagactgttactcttggtccttctgtgagagagggagagcttgtttttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctggtgctcagtctgctcttagggctcttgctcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="42488" stop="40183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42186" g_stop="42098" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="108" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="154" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="240" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40587" g_stop="40483" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="345" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E337471" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42186" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGT</genome_strand>
        <mrna_strand>AGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTTAGGGCTCTTGCTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299115" ref_strand="+" ref_description="SGN-E299115 [cLET-42-O14]">
      <seq>cgtattcaacatcgccgtttcagcagaagtaacaaaaacaacaccatgtcgaagaggaggactagggagccaaaggaagagactgttactcttggtccttctgtgagagagggagagcttgtttttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaagaccaaaacacctggacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="43367" stop="40215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43067" g_stop="43020" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43019" i_stop="42218" i_length="802">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="168" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="214" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="300" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40587" g_stop="40515" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="373" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E299115" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43067" e_stop="43020"/>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATGGTAATGAAATCTATCGAATATAATAGTTTTCCTTGAATATTGTGGATGAATTTGAGGTTATTTGCTGCTTTTATCTTTAGGATAGCTTCAATTTAATCCATAGAGTTACCTGGGTATGCTTAGATTAGTTATTCTTCTAGATTTCTGAAAAAAAGATTATATCTTTCCTAGTGAATATCTGTTTATCCTCTGTTATTGTTTTGATCTTGCTTAAAGACATGGTCCCCATTGTTTCTATCTCTTGCTTATAACATTTAGATATCAGTAGTTTAGAACAATGATCGGTCGAATTGGAACATAACTCAGTAGACTATCTGGATACTTCACTTTGAAAAATGATACAAACTGGATACATCATATTTTAGCTGTAGATAATGGTTGATTAAAGTTTTGCTCTGTAAACCAAATTGTTGAAGCTTATGACTTCTAAATTAAAGAATTTGGACAAGCTGTAGTTGGTTTAGAAGTGATGCATGAACTCTATAAGTGAGCCTTGTTGAACCTTGTTACATAGTCAGATTGCTTAATCAGTATTTTAAGTTTATGGTTAAAGGCCAAAATCCATTTGGTTTAGTGGGTTCTTTATTGATTATTTATACATATTTAGTTCAACTTTTTTGACAGAGATATAGAGTGTTCTGGTGAACAGTTAGCTTCTATGGTGGATCTGCCCTTTGTTAGATTTACTTTTTAAAAGGAAATTGTTGTTTTGCTTTGTGGGATAAGTGAAGGAAAGAATGATCAGTGTTGAGCTTTCTTTCGATATCTATTTTGTTGTAATGTTAATTGCCTGGCCTTGCAGTCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTG</genome_strand>
        <mrna_strand>CGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E582287" ref_strand="+" ref_description="SGN-E582287 [7920]">
      <seq>catttttgcatcattcaatgacactttcattcacgtgactgatttgtctggcacgggaaacaatggttcgtattactggtgggatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgctgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactggtggaaacaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="42428" stop="40233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42128" g_stop="42098" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="78" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="164" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40587" g_stop="40533" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="219" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E582287" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E582287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42128" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGG-ACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGA</genome_strand>
        <mrna_strand>CATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGCACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCTGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340573" ref_strand="+" ref_description="SGN-E340573 [cTOF-1-E7]">
      <seq>cgtattcaacatcgccgtttcagcagaagtaacaaaaacaacaccatgtcgaagaggaggactagggagccaaaggaagagactgttactcttggtccttctgtgagagagggagagcttgtttttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctcagagatgcaaggagcttggcatcaatgcacttcacatcaagcttcgagccactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="43367" stop="40244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43067" g_stop="43020" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43019" i_stop="42218" i_length="802">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="168" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="214" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40775" g_stop="40690" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="300" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40587" g_stop="40544" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="344" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E340573" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43067" e_stop="43020"/>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40690"/>
          <exon e_start="40587" e_stop="40544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATGGTAATGAAATCTATCGAATATAATAGTTTTCCTTGAATATTGTGGATGAATTTGAGGTTATTTGCTGCTTTTATCTTTAGGATAGCTTCAATTTAATCCATAGAGTTACCTGGGTATGCTTAGATTAGTTATTCTTCTAGATTTCTGAAAAAAAGATTATATCTTTCCTAGTGAATATCTGTTTATCCTCTGTTATTGTTTTGATCTTGCTTAAAGACATGGTCCCCATTGTTTCTATCTCTTGCTTATAACATTTAGATATCAGTAGTTTAGAACAATGATCGGTCGAATTGGAACATAACTCAGTAGACTATCTGGATACTTCACTTTGAAAAATGATACAAACTGGATACATCATATTTTAGCTGTAGATAATGGTTGATTAAAGTTTTGCTCTGTAAACCAAATTGTTGAAGCTTATGACTTCTAAATTAAAGAATTTGGACAAGCTGTAGTTGGTTTAGAAGTGATGCATGAACTCTATAAGTGAGCCTTGTTGAACCTTGTTACATAGTCAGATTGCTTAATCAGTATTTTAAGTTTATGGTTAAAGGCCAAAATCCATTTGGTTTAGTGGGTTCTTTATTGATTATTTATACATATTTAGTTCAACTTTTTTGACAGAGATATAGAGTGTTCTGGTGAACAGTTAGCTTCTATGGTGGATCTGCCCTTTGTTAGATTTACTTTTTAAAAGGAAATTGTTGTTTTGCTTTGTGGGATAAGTGAAGGAAAGAATGATCAGTGTTGAGCTTTCTTTCGATATCTATTTTGTTGTAATGTTAATTGCCTGGCCTTGCAGTCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAGGTTGTAGCTTATATTTAGTTCTCATTCCAATACCATCGACCATCAGTTGAGTAATGTGTTTCATTCTGCTCACTCTTTTGGGTCTTGTCTTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGG</genome_strand>
        <mrna_strand>CGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAG......................................................................................................GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270666" ref_strand="+" ref_description="SGN-E270666 [cLEM-6-C12]">
      <seq>tcctccgtattcaacatcgccgtttcagcagaagtaacaaaaacaacaccatgtcgaagaggaggactagggagccaaaggaagagactgttactcttggtccttctgtgagagagggagagcttgtttttggtgtcgctcacatttttgcatcattcaatgacactttcattcacgtgactgatttgtctggacgggaaacaatggttcgtattactggtggaatgaaggtcaaagctgatagggatgaatcttccccatatgctgctatgcttgccgcacaagatgtttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="43372" stop="40401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43072" g_stop="43020" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43019" i_stop="42218" i_length="802">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42217" g_stop="42098" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="173" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42012" g_stop="41967" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="219" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40775" g_stop="40701" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="294" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E270666" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43072" e_stop="43020"/>
          <exon e_start="42217" e_stop="42098"/>
          <exon e_start="42012" e_stop="41967"/>
          <exon e_start="40775" e_stop="40701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATGGTAATGAAATCTATCGAATATAATAGTTTTCCTTGAATATTGTGGATGAATTTGAGGTTATTTGCTGCTTTTATCTTTAGGATAGCTTCAATTTAATCCATAGAGTTACCTGGGTATGCTTAGATTAGTTATTCTTCTAGATTTCTGAAAAAAAGATTATATCTTTCCTAGTGAATATCTGTTTATCCTCTGTTATTGTTTTGATCTTGCTTAAAGACATGGTCCCCATTGTTTCTATCTCTTGCTTATAACATTTAGATATCAGTAGTTTAGAACAATGATCGGTCGAATTGGAACATAACTCAGTAGACTATCTGGATACTTCACTTTGAAAAATGATACAAACTGGATACATCATATTTTAGCTGTAGATAATGGTTGATTAAAGTTTTGCTCTGTAAACCAAATTGTTGAAGCTTATGACTTCTAAATTAAAGAATTTGGACAAGCTGTAGTTGGTTTAGAAGTGATGCATGAACTCTATAAGTGAGCCTTGTTGAACCTTGTTACATAGTCAGATTGCTTAATCAGTATTTTAAGTTTATGGTTAAAGGCCAAAATCCATTTGGTTTAGTGGGTTCTTTATTGATTATTTATACATATTTAGTTCAACTTTTTTGACAGAGATATAGAGTGTTCTGGTGAACAGTTAGCTTCTATGGTGGATCTGCCCTTTGTTAGATTTACTTTTTAAAAGGAAATTGTTGTTTTGCTTTGTGGGATAAGTGAAGGAAAGAATGATCAGTGTTGAGCTTTCTTTCGATATCTATTTTGTTGTAATGTTAATTGCCTGGCCTTGCAGTCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATTGTATGTGGTAACCAATGTATCCATTATTATTTATTGTCTCAGTAAGTTGTCTCAACTAGTTACATACTTTGTTTTTGGACTGCAGCACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTGGTAAGGACTACATCTTTTTACAGAGTAGGCTTACATAAATTTGATTATCTTGGTACATGGCGTATATGTTGAGGGGTTGATAAATTAAGGGATCAAATTTTACATAATCTGGCTTTTACTTGCCTTTTATTCATGTAGAGTTACGACATGCAATTGTAAGCTCTATTTTGACAACAAAAAAGCCATCTGAGTGACATCTTTTCCATTTTTTCCCTTATATTATTTGATTTGTACCTTAATGCAATCACGTAACATGAGAAAGCACATGTTATTATTGTGATTGCACTGGATAATGTTGTATACCTTAATGCTATCCTTGCTGGGCATGGCAGAGTCACGTTTTGGGTTTCAGTGGGAGTTAGGTTGCATTGGTTTCACTTATAATTACTGTCACATTTTATCAGAGAATTGTTTAATTTAAAATAGTCTATAATGTGTTACTATGCTCTAGTTGATGTTCACGACATTTCTAGGTTTGGTGTTAGTTCTTGGCTTCTACTGCTAGTTTCAAGCATCATGCGCCATAGTGCTATGTTATGTTCGGAAATTGAATAGATATCACTGGTTATGTTGAACATCACAAGTTCTTTTGTTTTGCCTAATTGTTTTTGTCTTCGCACTTCTTTTTATCTTTTTGTCTAGTAGCCTGTTATCTTTGATTCATTAGCTACTGAATTTGCGCTACTTAAATCCTGATTCTTCCTTGCATACACCCTTTATATCTTCAATATAGATATGTTTATTCCCATAATTCTCTTCTACTGAAGCTCATTTTTGGTGATTAGCTTTTGTATTCTTTTACCTAGTATCAGGACGTCAAAGCTTTTATCTATTGAATTTCAGCAATTTCTGGATTATAAGCCCTGTTATTATTGTAACCATTTGAGCTCTACTTCAAATTCTTTATAACATTTCTAAACAATACCATATGGTAAATTTCTATTTGATCAAATTTGTGCTGTTACTTTCTTTGTCATTGCAGCCCTATTTAAATTTCTTGTGGACATTAAGAACTTTTGCTTTCTAAATGTCAATACTGGTGCACCAATTATCCAACTTGAGAAGTTGCTAGGTTTTCTGTTGATGTTTTAACGATTCCAAAGCTCATCTATATTCCTGCTCTTTACCCTTGTCTTAGTTGTTTATTGGGAAGAGTTGTAATAAATTTCCGGTGTCACCTGTTTCTAATAGGTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTC</genome_strand>
        <mrna_strand>TCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT.....................................................................................CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546021" ref_strand="-" ref_description="SGN-E546021 [TUS-69-C18]">
      <seq>gcatgaaaacagtggttcccctacccgcgcctcttggcctcatatgccttggaagactctatccttttttaacttcgttttgctttgcttccatggctaatggaattaatctcactgacggtcttgatggattggctggaggaacagccacattggcgttcattgcaatggctattgcagtgcttcctatatgttctgagctttccatatttggagcatctatggcaggagcctgtgcaggttttcttctgcacaaccggtacaaagcatcaatatttatgggtgatacaggagctttagccttagggggtgctctagcttctatggctgcatgtacgggaatgttctttccattgttcatctcatctggtgtttttgtcctcgaagcactatcagttatactgcaggtttccttcttcaagacaacgaaacacttcctaggaactggaccccgcttgtttcgaatggcaccattacatcacccccttgaattatgtggagtaaaagaacctgtcattgttgctggtgcatatgttttttcttgcattttggccttgactgctggatatgtgggactggcttcagtataacctcaactcatggactctgtagttgacaagtttaagtcactttcctgcaaattttctcttttgcgttcaaacttagagaacagattgaagaaactgtttttttttcaaaaaaaaatatgtagttattttggtctacctctgtaacttaactaggaatagttgctattctaatacttgagaatctttaaattaaaaaaaaaaaaaaaaaaaaaaaaaacttcggactagtctcttctctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="45752" stop="6724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45452" g_stop="45255" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45254" i_stop="45047" i_length="208">
            <donor d_prob="0.780" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45046" g_stop="44838" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="407" r_length="209" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44837" i_stop="43957" i_length="881">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43956" g_stop="43591" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="779" r_length="372" r_score="0.858"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43590" i_stop="43307" i_length="284">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43306" g_stop="43254" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="831" r_length="52" r_score="0.566"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E546021" ref_strand="-">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546021" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45452" e_stop="45255"/>
          <exon e_start="45046" e_stop="44838"/>
          <exon e_start="43956" e_stop="43591"/>
          <exon e_start="43306" e_stop="43254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGAAAACAGTGGTTCCCCTACCCGCGCCTCTTGGGCTCATATGCCTTGGAAGACTCTATCCTTTTTTAACTTCGTTTTGCTTTGCTTCCATGGCTAATGGAATTAATCTTACTGACGGTCTCGACGGATTGGCTGGAGGAACAGCCACATTGGCGTTCATTGCAATGGCTATTGCAGTGCTTCCTATATGTTCTGGTCAGTGCGTGAACTGTTGATCCTTGTGGTGTTAATTGCAATTCAACTGTACTGACTTCGTTGTCTTACTTAGTCCAATAGTGTTCATGCAAATTTTTGTGATGAAAAAAGGTTTCATTTTAATTTCCTAGAGAAGCTGTATCTTGAAACTTGCATTTTCTGAATGTCCATGATTCTTGCTGAGTATGGGTTTCTATGTCCAAAACAGAGCTTTCCATATTTGGAGCATCTATGGCAGGAGCCTGTGCAGGTTTTCTTCTGCACAACCGCTACAAAGCATCAATATTTATGGGTGATACAGGAGCTTTAGCCTTAGGGGGTGCTCTAGCTTCTATGGCTGCATGTACGGGGATGTTCTTTCCATTGTTCATCTCATCTGGTGTTTTTGTCCTCGAAGCACTATCAGTTATACTGCAGGTAACTTGTTAACTATTCTGTAAGTGTAATCCTTTATCTCTTTCTCAAAAATTCTGGATAATTATCAGTTTGTTTGCAAATAGGAAATTATTAGCTTTTCTCATTCTGGTAACTCTATCCTTTGCTCTGGTATGCTTTACTTGAGCCTAGGGTCTTTTGCGAACAATTGTTCTACCCCTAGGAGGTAGGAGTACCGTCGTCCCCCACCCATGGGATTACCCTGTATATGTTTTTGTAGGTAACTTTATCTATTCTGGATTTCTTGTTTGAACTATGCAATATAGAGATGCTTCTATAGTCTACTTGTCGGTGTTTGAGAATTTGGAAGTGGAATTCATTGCTCTCTTTAGCCCCTTTCATCTTTAGTTTGAACTTCTAATAATGTGGTCAGTTCCCCTTCCCTCCCTATCAACCTACCTACCTCACAATGCAACTTAGGCTTCTTACATTGTATATGTTTTCCTTCTCTTGCTTTCACCTGATCGTCCATGTGAACTTCTCTTCAGAGATGTAGTTATGAAGGGAATTAAGGAGAAACAAATGTGTTTTTTGTAGTTTGAGAAGTTTGCATCACTCTACTCAAATTTGCTTCCTTATTGCTTTACGAATCTTTCACTGTGCAAATGTAATTAACTAATCAAGCTGCCTTCTCCACTCTCGTAAGTTCAGCTAAGGTTGCTTGGGATGGTCCTTGTTCTTGGACCTGTGTTGATGTTGAGTTTTTGCTGCATCTATGTGAAAATGAAATTAATGTCTAGTTCATATACAACCTCTGCCTTGATTGTCCTAACCTATTTCTTAACAATGTTGCATCGAATTATCTCCACGATATGTTTGCACATTTTTTAGATTCAACTGACACAGTCTTACCTGTGTCTCAGGTTTCCTTCTTCAAGACAACGAAACACTTCCTAGGAACTGGACACCGCTTGTTTCGAATGGCACCATTACATCACCACCTTGAATTATGTGGAGTAAAAGAACCTGTCATTGTTGCTGGTGCATATGTTTTTTCTTGCATTTTGGCCTTGACTGCTGGATATGTGGGACTGGCTTCAGTATAACCTC-A--C-----CTC---A--TG--AAGTTCAAGTCAC-TTCCTGCAAATTTTCTCTTTTGCGTTCAAACTTAGACAACAGATTGAAGAAACTGTTTTTTTTTTCCTTTCCAAAAAAAAAAATGTAGTTATTTTGATCTACCTCTGTAACTTAACTAGGAATAGTTGTTACTATCCAAATACTTGAGAATCGTAAAATAACCCTATTACTGGCTTCTTTGTATCGCCCGTCTCAAATTCGGATAAAGGAGAAAGATTATCGAGAATCAAATAGACATATATATATTTGATACACATTTTAAACATATAATTATATTTGATACATTTATAAATGTATCCAGAAATTCATTATGATTTTATTTCTATAATCTTATAATTGATTTGATTAAATTCAACTCAAACAACCATTAATATGTATTTGACGCATCTAGTCGAATCTTATCATCTTAAACACGTTATCGTAACAAATAATCTTCTCTTTTTTAAAAATAAATAAATAAGACAAGATAATTTGAGGTAGAAAGGGTAGTTTTTG</genome_strand>
        <mrna_strand>GCATGAAAACAGTGGTTCCCCTACCCGCGCCTCTTGGCCTCATATGCCTTGGAAGACTCTATCCTTTTTTAACTTCGTTTTGCTTTGCTTCCATGGCTAATGGAATTAATCTCACTGACGGTCTTGATGGATTGGCTGGAGGAACAGCCACATTGGCGTTCATTGCAATGGCTATTGCAGTGCTTCCTATATGTTCTG................................................................................................................................................................................................................AGCTTTCCATATTTGGAGCATCTATGGCAGGAGCCTGTGCAGGTTTTCTTCTGCACAACCGGTACAAAGCATCAATATTTATGGGTGATACAGGAGCTTTAGCCTTAGGGGGTGCTCTAGCTTCTATGGCTGCATGTACGGGAATGTTCTTTCCATTGTTCATCTCATCTGGTGTTTTTGTCCTCGAAGCACTATCAGTTATACTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCTTCTTCAAGACAACGAAACACTTCCTAGGAACTGGACCCCGCTTGTTTCGAATGGCACCATTACATCACCCCCTTGAATTATGTGGAGTAAAAGAACCTGTCATTGTTGCTGGTGCATATGTTTTTTCTTGCATTTTGGCCTTGACTGCTGGATATGTGGGACTGGCTTCAGTATAACCTCAACTCATGGACTCTGTAGTTGACAAGTTTAAGTCACTTTCCTGCAAATTTTCTCTTTTGCGTTCAAACTTAGAGAACAGATTGAAGAAACTG----TTTTTT--TTT-CAAAAAAAAATATGTAGTTATTTTGGTCTACCTCTGTAACTTAACTAGGAATAGTTG---CTATTCTAATACTTGAGAATCTTTAAA............................................................................................................................................................................................................................................................................................TTAAAAAAAAAAAAAAAAAAAAAAAAAACTT-CGGACTAGTCTCTTCTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262222" ref_strand="-" ref_description="SGN-E262222 [cLEG-56-E19]">
      <seq>ttttaacttcgttttgctttgctcccatggctaatggaattaatctacntgacggtctcgacggatggctgaggggaacagccacatnnggcgttcattgcaatggctattgcagtgcttcctatatgttctgagctttccatatttggagcatctatggcaggagcctgtgcaggttttcttctgcacaaccgctacaaagcatcaatatttatgggtgatacaggagctttagccttagggggtgctctagcttctatggctgcatgtacggggatgttctttccattgttcatctcatctggtgtttttgtcctcgaagcactatcagttatactgcaggtttccttcttcaagacaacgaaacacttcctaggaactggacaccgcttgtttcgaatggcaccattacatcaccaccttgaattatgtggagtaaaagaacctgtcattgttgctggtgcatatgttttttcttgcattttggccttgactgctggatatgtgggactggcttcagtataacctcacctcatgaagttcaagtcacttcctgcaaattttctcttttgcgttcaaacttagacaacagattgaagaaactgtttttttttcctttccaaaaaaaaaaatgtagttattttggtctacctctgtaacttaactaggaatagttgttactatccaaatacttgagaatcgtaaaataaccctattactggcttcttcgtatcgcccgtctcaaattcggataaaggagaaagattatcgagaatcaaatagacatatatatatttgatacacattttaaacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="45686" stop="43179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45386" g_stop="45255" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45254" i_stop="45047" i_length="208">
            <donor d_prob="0.780" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45046" g_stop="44838" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="342" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44837" i_stop="43957" i_length="881">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43956" g_stop="43477" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="821" r_length="479" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E262222" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262222" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45386" e_stop="45255"/>
          <exon e_start="45046" e_stop="44838"/>
          <exon e_start="43956" e_stop="43477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAACTTCGTTTTGCTTTGCTTCCATGGCTAATGGAATTAATCTTACTGACGGTCTCGACGGATTGGCTG-GAGGAACAGCCACATT-GGCGTTCATTGCAATGGCTATTGCAGTGCTTCCTATATGTTCTGGTCAGTGCGTGAACTGTTGATCCTTGTGGTGTTAATTGCAATTCAACTGTACTGACTTCGTTGTCTTACTTAGTCCAATAGTGTTCATGCAAATTTTTGTGATGAAAAAAGGTTTCATTTTAATTTCCTAGAGAAGCTGTATCTTGAAACTTGCATTTTCTGAATGTCCATGATTCTTGCTGAGTATGGGTTTCTATGTCCAAAACAGAGCTTTCCATATTTGGAGCATCTATGGCAGGAGCCTGTGCAGGTTTTCTTCTGCACAACCGCTACAAAGCATCAATATTTATGGGTGATACAGGAGCTTTAGCCTTAGGGGGTGCTCTAGCTTCTATGGCTGCATGTACGGGGATGTTCTTTCCATTGTTCATCTCATCTGGTGTTTTTGTCCTCGAAGCACTATCAGTTATACTGCAGGTAACTTGTTAACTATTCTGTAAGTGTAATCCTTTATCTCTTTCTCAAAAATTCTGGATAATTATCAGTTTGTTTGCAAATAGGAAATTATTAGCTTTTCTCATTCTGGTAACTCTATCCTTTGCTCTGGTATGCTTTACTTGAGCCTAGGGTCTTTTGCGAACAATTGTTCTACCCCTAGGAGGTAGGAGTACCGTCGTCCCCCACCCATGGGATTACCCTGTATATGTTTTTGTAGGTAACTTTATCTATTCTGGATTTCTTGTTTGAACTATGCAATATAGAGATGCTTCTATAGTCTACTTGTCGGTGTTTGAGAATTTGGAAGTGGAATTCATTGCTCTCTTTAGCCCCTTTCATCTTTAGTTTGAACTTCTAATAATGTGGTCAGTTCCCCTTCCCTCCCTATCAACCTACCTACCTCACAATGCAACTTAGGCTTCTTACATTGTATATGTTTTCCTTCTCTTGCTTTCACCTGATCGTCCATGTGAACTTCTCTTCAGAGATGTAGTTATGAAGGGAATTAAGGAGAAACAAATGTGTTTTTTGTAGTTTGAGAAGTTTGCATCACTCTACTCAAATTTGCTTCCTTATTGCTTTACGAATCTTTCACTGTGCAAATGTAATTAACTAATCAAGCTGCCTTCTCCACTCTCGTAAGTTCAGCTAAGGTTGCTTGGGATGGTCCTTGTTCTTGGACCTGTGTTGATGTTGAGTTTTTGCTGCATCTATGTGAAAATGAAATTAATGTCTAGTTCATATACAACCTCTGCCTTGATTGTCCTAACCTATTTCTTAACAATGTTGCATCGAATTATCTCCACGATATGTTTGCACATTTTTTAGATTCAACTGACACAGTCTTACCTGTGTCTCAGGTTTCCTTCTTCAAGACAACGAAACACTTCCTAGGAACTGGACACCGCTTGTTTCGAATGGCACCATTACATCACCACCTTGAATTATGTGGAGTAAAAGAACCTGTCATTGTTGCTGGTGCATATGTTTTTTCTTGCATTTTGGCCTTGACTGCTGGATATGTGGGACTGGCTTCAGTATAACCTCACCTCATGAAGTTCAAGTCACTTCCTGCAAATTTTCTCTTTTGCGTTCAAACTTAGACAACAGATTGAAGAAACTGTTTTTTTTTTCCTTTCCAAAAAAAAAAATGTAGTTATTTTGATCTACCTCTGTAACTTAACTAGGAATAGTTGTTACTATCCAAATACTTGAGAATCGTAAAATAACCCTATTACTGGCTTCTTTGTATCGCCCGTCTCAAATTCGGATAAAGGAGAAAGATTATCGAGAATCAAATAGACATATATATATTTGATACACATTTTAAACATATAATT</genome_strand>
        <mrna_strand>TTTTAACTTCGTTTTGCTTTGCTCCCATGGCTAATGGAATTAATCTACNTGACGGTCTCGACGGA-TGGCTGAGGGGAACAGCCACATNNGGCGTTCATTGCAATGGCTATTGCAGTGCTTCCTATATGTTCTG................................................................................................................................................................................................................AGCTTTCCATATTTGGAGCATCTATGGCAGGAGCCTGTGCAGGTTTTCTTCTGCACAACCGCTACAAAGCATCAATATTTATGGGTGATACAGGAGCTTTAGCCTTAGGGGGTGCTCTAGCTTCTATGGCTGCATGTACGGGGATGTTCTTTCCATTGTTCATCTCATCTGGTGTTTTTGTCCTCGAAGCACTATCAGTTATACTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCTTCTTCAAGACAACGAAACACTTCCTAGGAACTGGACACCGCTTGTTTCGAATGGCACCATTACATCACCACCTTGAATTATGTGGAGTAAAAGAACCTGTCATTGTTGCTGGTGCATATGTTTTTTCTTGCATTTTGGCCTTGACTGCTGGATATGTGGGACTGGCTTCAGTATAACCTCACCTCATGAAGTTCAAGTCACTTCCTGCAAATTTTCTCTTTTGCGTTCAAACTTAGACAACAGATTGAAGAAACTG-TTTTTTTTTCCTTTCCAAAAAAAAAAATGTAGTTATTTTGGTCTACCTCTGTAACTTAACTAGGAATAGTTGTTACTATCCAAATACTTGAGAATCGTAAAATAACCCTATTACTGGCTTCTTCGTATCGCCCGTCTCAAATTCGGATAAAGGAGAAAGATTATCGAGAATCAAATAGACATATATATATTTGATACACATTTTAAACAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261140" ref_strand="+" ref_description="SGN-E261140 [cLEG-65-N1]">
      <seq>ttttttttgtttaaaatgtgtatcaaatatatatatgtctatttgattctcgataatctttctcctttatccgaatttgagacgggcgatacgaagaagccagtaatagggttattttacgattctcaagtatttggatagtaacaactattcctagttaagttacagaggtagaccaaaataactacatttttttttttggaaaggaaaaaaaaacagtttcttcaatctgttgtctaagtttgaacgcaaaagagaaaatttgcaggaagtgacttgaacttcatgaggtgaggttatactgaagccagtcccacatatccagcagtcaaggccaaaatgcaagaaaaaacatatgcaccagcaacaatgacaggttcttttactccacataattcaaggtggtgatgtaatggtgccattcgaaacaagcggtgtccagttcctaggaagtgtttcgttgtcttgaagaaggaaacctgcagtataactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="+" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="43179" stop="44269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43477" g_stop="43967" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="+" ref_id="SGN-E261140" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43477" e_stop="43967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATATGTTTAAAATGTGTATCAAATATATATATGTCTATTTGATTCTCGATAATCTTTCTCCTTTATCCGAATTTGAGACGGGCGATACAAAGAAGCCAGTAATAGGGTTATTTTACGATTCTCAAGTATTTGGATAGTAACAACTATTCCTAGTTAAGTTACAGAGGTAGATCAAAATAACTACATTTTTTTTTTTGGAAAGGAAAAAAAAAACAGTTTCTTCAATCTGTTGTCTAAGTTTGAACGCAAAAGAGAAAATTTGCAGGAAGTGACTTGAACTTCATGAGGTGAGGTTATACTGAAGCCAGTCCCACATATCCAGCAGTCAAGGCCAAAATGCAAGAAAAAACATATGCACCAGCAACAATGACAGGTTCTTTTACTCCACATAATTCAAGGTGGTGATGTAATGGTGCCATTCGAAACAAGCGGTGTCCAGTTCCTAGGAAGTGTTTCGTTGTCTTGAAGAAGGAAACCTGAGACACAG</genome_strand>
        <mrna_strand>TTTTTTTTGTTTAAAATGTGTATCAAATATATATATGTCTATTTGATTCTCGATAATCTTTCTCCTTTATCCGAATTTGAGACGGGCGATACGAAGAAGCCAGTAATAGGGTTATTTTACGATTCTCAAGTATTTGGATAGTAACAACTATTCCTAGTTAAGTTACAGAGGTAGACCAAAATAACTACATTTTTTTTTTTGGAAAGG-AAAAAAAAACAGTTTCTTCAATCTGTTGTCTAAGTTTGAACGCAAAAGAGAAAATTTGCAGGAAGTGACTTGAACTTCATGAGGTGAGGTTATACTGAAGCCAGTCCCACATATCCAGCAGTCAAGGCCAAAATGCAAGAAAAAACATATGCACCAGCAACAATGACAGGTTCTTTTACTCCACATAATTCAAGGTGGTGATGTAATGGTGCCATTCGAAACAAGCGGTGTCCAGTTCCTAGGAAGTGTTTCGTTGTCTTGAAGAAGGAAACCTGCAGTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705475" ref_strand="+" ref_description="SGN-E705475 [FA27BA09]">
      <seq>ggctcatatgccttggaagactctatccttttttaacttcgttttgctttgcttccatggctaatggaattaatcttactgacggtctcgacggattggctggaggaacagccacattggcgttcattgcaatggctattgcagtgcttcctatatgttctgagctttccatatttggagcatctatggcaggagcctgtgcaggttttcttctgcacaaccgctacaaagcatcaatatttatgggtgatacaggagctttagccttagggggtgctctagcttctatggctgcatgtacggggatgttctttccattgttcatctcatctggtgtttttgtcctcgaagcactatcagttatactgcaggtttccttcttcaagacaacgaaacacttcctaggaactggacaccgcttgtttcgaatggcaccattacatcaccaccttgaattatgtggagtaaaagaacctgtcattgttgctggtgcatatgttttttcttgcattttggccttgactgctggatatgtgggactggcttcagtataacctcacctcatgaagttcaagtcacttcctgcaaattttctcttttgcgttcaaacttagacaacagattgaagaaactgttttttttttcctttccaaaaaaaaaaatgtagttattttgatctacctctgaaacttaactaggaatagttgttactatccaaatacttgagaatcgtaaaataaccctattactggcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="45716" stop="43271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45416" g_stop="45255" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45254" i_stop="45047" i_length="208">
            <donor d_prob="0.780" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45046" g_stop="44838" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="371" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44837" i_stop="43957" i_length="881">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43956" g_stop="43571" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="757" r_length="386" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E705475" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45416" e_stop="45255"/>
          <exon e_start="45046" e_stop="44838"/>
          <exon e_start="43956" e_stop="43571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCATATGCCTTGGAAGACTCTATCCTTTTTTAACTTCGTTTTGCTTTGCTTCCATGGCTAATGGAATTAATCTTACTGACGGTCTCGACGGATTGGCTGGAGGAACAGCCACATTGGCGTTCATTGCAATGGCTATTGCAGTGCTTCCTATATGTTCTGGTCAGTGCGTGAACTGTTGATCCTTGTGGTGTTAATTGCAATTCAACTGTACTGACTTCGTTGTCTTACTTAGTCCAATAGTGTTCATGCAAATTTTTGTGATGAAAAAAGGTTTCATTTTAATTTCCTAGAGAAGCTGTATCTTGAAACTTGCATTTTCTGAATGTCCATGATTCTTGCTGAGTATGGGTTTCTATGTCCAAAACAGAGCTTTCCATATTTGGAGCATCTATGGCAGGAGCCTGTGCAGGTTTTCTTCTGCACAACCGCTACAAAGCATCAATATTTATGGGTGATACAGGAGCTTTAGCCTTAGGGGGTGCTCTAGCTTCTATGGCTGCATGTACGGGGATGTTCTTTCCATTGTTCATCTCATCTGGTGTTTTTGTCCTCGAAGCACTATCAGTTATACTGCAGGTAACTTGTTAACTATTCTGTAAGTGTAATCCTTTATCTCTTTCTCAAAAATTCTGGATAATTATCAGTTTGTTTGCAAATAGGAAATTATTAGCTTTTCTCATTCTGGTAACTCTATCCTTTGCTCTGGTATGCTTTACTTGAGCCTAGGGTCTTTTGCGAACAATTGTTCTACCCCTAGGAGGTAGGAGTACCGTCGTCCCCCACCCATGGGATTACCCTGTATATGTTTTTGTAGGTAACTTTATCTATTCTGGATTTCTTGTTTGAACTATGCAATATAGAGATGCTTCTATAGTCTACTTGTCGGTGTTTGAGAATTTGGAAGTGGAATTCATTGCTCTCTTTAGCCCCTTTCATCTTTAGTTTGAACTTCTAATAATGTGGTCAGTTCCCCTTCCCTCCCTATCAACCTACCTACCTCACAATGCAACTTAGGCTTCTTACATTGTATATGTTTTCCTTCTCTTGCTTTCACCTGATCGTCCATGTGAACTTCTCTTCAGAGATGTAGTTATGAAGGGAATTAAGGAGAAACAAATGTGTTTTTTGTAGTTTGAGAAGTTTGCATCACTCTACTCAAATTTGCTTCCTTATTGCTTTACGAATCTTTCACTGTGCAAATGTAATTAACTAATCAAGCTGCCTTCTCCACTCTCGTAAGTTCAGCTAAGGTTGCTTGGGATGGTCCTTGTTCTTGGACCTGTGTTGATGTTGAGTTTTTGCTGCATCTATGTGAAAATGAAATTAATGTCTAGTTCATATACAACCTCTGCCTTGATTGTCCTAACCTATTTCTTAACAATGTTGCATCGAATTATCTCCACGATATGTTTGCACATTTTTTAGATTCAACTGACACAGTCTTACCTGTGTCTCAGGTTTCCTTCTTCAAGACAACGAAACACTTCCTAGGAACTGGACACCGCTTGTTTCGAATGGCACCATTACATCACCACCTTGAATTATGTGGAGTAAAAGAACCTGTCATTGTTGCTGGTGCATATGTTTTTTCTTGCATTTTGGCCTTGACTGCTGGATATGTGGGACTGGCTTCAGTATAACCTCACCTCATGAAGTTCAAGTCACTTCCTGCAAATTTTCTCTTTTGCGTTCAAACTTAGACAACAGATTGAAGAAACTGTTTTTTTTTTCCTTTCCAAAAAAAAAAATGTAGTTATTTTGATCTACCTCTGTAACTTAACTAGGAATAGTTGTTACTATCCAAATACTTGAGAATCGTAAAATAACCCTATTACTGGCTTCT</genome_strand>
        <mrna_strand>GGCTCATATGCCTTGGAAGACTCTATCCTTTTTTAACTTCGTTTTGCTTTGCTTCCATGGCTAATGGAATTAATCTTACTGACGGTCTCGACGGATTGGCTGGAGGAACAGCCACATTGGCGTTCATTGCAATGGCTATTGCAGTGCTTCCTATATGTTCTG................................................................................................................................................................................................................AGCTTTCCATATTTGGAGCATCTATGGCAGGAGCCTGTGCAGGTTTTCTTCTGCACAACCGCTACAAAGCATCAATATTTATGGGTGATACAGGAGCTTTAGCCTTAGGGGGTGCTCTAGCTTCTATGGCTGCATGTACGGGGATGTTCTTTCCATTGTTCATCTCATCTGGTGTTTTTGTCCTCGAAGCACTATCAGTTATACTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCTTCTTCAAGACAACGAAACACTTCCTAGGAACTGGACACCGCTTGTTTCGAATGGCACCATTACATCACCACCTTGAATTATGTGGAGTAAAAGAACCTGTCATTGTTGCTGGTGCATATGTTTTTTCTTGCATTTTGGCCTTGACTGCTGGATATGTGGGACTGGCTTCAGTATAACCTCACCTCATGAAGTTCAAGTCACTTCCTGCAAATTTTCTCTTTTGCGTTCAAACTTAGACAACAGATTGAAGAAACTGTTTTTTTTTTCCTTTCCAAAAAAAAAAATGTAGTTATTTTGATCTACCTCTGAAACTTAACTAGGAATAGTTGTTACTATCCAAATACTTGAGAATCGTAAAATAACCCTATTACTGGCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288458" ref_strand="+" ref_description="SGN-E288458 [cLES-16-P4]">
      <seq>acggattggctggaggaacaaccacattggcgttcattgcaatggctattgcagtgcttcctatatgttctgagctttccatatttggagcatctatggcaggagcctgtgcaggttttcttctgcacaaccgctacaaagcatcaatatttatgggtgatacaggagctttagccttagggggtgctctagcttctatggctgcatgtacggggatgttctttccattgctcatctcatctggtgtttttgtcctcgaagcactatcagttatactgcatgtttccttcttcaagacaacgaaacacttcctaggaactggacaccgcttgtttcgaatggcaccattacatcaccaccttgaattatgtggagtaaaagaacctgtcattgttgctggtgcatatgttttttcttgcattttggccttgactgctggatatgtgggactggcttcagtataacctcacctcatgaagttcaaggcacttcctgcaaattttctcttttgcgttcaaacttagacaacagattgaagaaactgtttttttttcctttccaaaaaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="45626" stop="43365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45326" g_stop="45255" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45254" i_stop="45047" i_length="208">
            <donor d_prob="0.780" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45046" g_stop="44838" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="281" r_length="209" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44837" i_stop="43957" i_length="881">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43956" g_stop="43665" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="572" r_length="291" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E288458" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45326" e_stop="45255"/>
          <exon e_start="45046" e_stop="44838"/>
          <exon e_start="43956" e_stop="43665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGATTGGCTGGAGGAACAGCCACATTGGCGTTCATTGCAATGGCTATTGCAGTGCTTCCTATATGTTCTGGTCAGTGCGTGAACTGTTGATCCTTGTGGTGTTAATTGCAATTCAACTGTACTGACTTCGTTGTCTTACTTAGTCCAATAGTGTTCATGCAAATTTTTGTGATGAAAAAAGGTTTCATTTTAATTTCCTAGAGAAGCTGTATCTTGAAACTTGCATTTTCTGAATGTCCATGATTCTTGCTGAGTATGGGTTTCTATGTCCAAAACAGAGCTTTCCATATTTGGAGCATCTATGGCAGGAGCCTGTGCAGGTTTTCTTCTGCACAACCGCTACAAAGCATCAATATTTATGGGTGATACAGGAGCTTTAGCCTTAGGGGGTGCTCTAGCTTCTATGGCTGCATGTACGGGGATGTTCTTTCCATTGTTCATCTCATCTGGTGTTTTTGTCCTCGAAGCACTATCAGTTATACTGCAGGTAACTTGTTAACTATTCTGTAAGTGTAATCCTTTATCTCTTTCTCAAAAATTCTGGATAATTATCAGTTTGTTTGCAAATAGGAAATTATTAGCTTTTCTCATTCTGGTAACTCTATCCTTTGCTCTGGTATGCTTTACTTGAGCCTAGGGTCTTTTGCGAACAATTGTTCTACCCCTAGGAGGTAGGAGTACCGTCGTCCCCCACCCATGGGATTACCCTGTATATGTTTTTGTAGGTAACTTTATCTATTCTGGATTTCTTGTTTGAACTATGCAATATAGAGATGCTTCTATAGTCTACTTGTCGGTGTTTGAGAATTTGGAAGTGGAATTCATTGCTCTCTTTAGCCCCTTTCATCTTTAGTTTGAACTTCTAATAATGTGGTCAGTTCCCCTTCCCTCCCTATCAACCTACCTACCTCACAATGCAACTTAGGCTTCTTACATTGTATATGTTTTCCTTCTCTTGCTTTCACCTGATCGTCCATGTGAACTTCTCTTCAGAGATGTAGTTATGAAGGGAATTAAGGAGAAACAAATGTGTTTTTTGTAGTTTGAGAAGTTTGCATCACTCTACTCAAATTTGCTTCCTTATTGCTTTACGAATCTTTCACTGTGCAAATGTAATTAACTAATCAAGCTGCCTTCTCCACTCTCGTAAGTTCAGCTAAGGTTGCTTGGGATGGTCCTTGTTCTTGGACCTGTGTTGATGTTGAGTTTTTGCTGCATCTATGTGAAAATGAAATTAATGTCTAGTTCATATACAACCTCTGCCTTGATTGTCCTAACCTATTTCTTAACAATGTTGCATCGAATTATCTCCACGATATGTTTGCACATTTTTTAGATTCAACTGACACAGTCTTACCTGTGTCTCAGGTTTCCTTCTTCAAGACAACGAAACACTTCCTAGGAACTGGACACCGCTTGTTTCGAATGGCACCATTACATCACCACCTTGAATTATGTGGAGTAAAAGAACCTGTCATTGTTGCTGGTGCATATGTTTTTTCTTGCATTTTGGCCTTGACTGCTGGATATGTGGGACTGGCTTCAGTATAACCTCACCTCATGAAGTTCAAGTCACTTCCTGCAAATTTTCTCTTTTGCGTTCAAACTTAGACAACAGATTGAAGAAACTGTTTTTTTTTTCCTTTCCAAAAAAAAAAAT</genome_strand>
        <mrna_strand>ACGGATTGGCTGGAGGAACAACCACATTGGCGTTCATTGCAATGGCTATTGCAGTGCTTCCTATATGTTCTG................................................................................................................................................................................................................AGCTTTCCATATTTGGAGCATCTATGGCAGGAGCCTGTGCAGGTTTTCTTCTGCACAACCGCTACAAAGCATCAATATTTATGGGTGATACAGGAGCTTTAGCCTTAGGGGGTGCTCTAGCTTCTATGGCTGCATGTACGGGGATGTTCTTTCCATTGCTCATCTCATCTGGTGTTTTTGTCCTCGAAGCACTATCAGTTATACTGCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCTTCTTCAAGACAACGAAACACTTCCTAGGAACTGGACACCGCTTGTTTCGAATGGCACCATTACATCACCACCTTGAATTATGTGGAGTAAAAGAACCTGTCATTGTTGCTGGTGCATATGTTTTTTCTTGCATTTTGGCCTTGACTGCTGGATATGTGGGACTGGCTTCAGTATAACCTCACCTCATGAAGTTCAAGGCACTTCCTGCAAATTTTCTCTTTTGCGTTCAAACTTAGACAACAGATTGAAGAAACTG-TTTTTTTTTCCTTTCCAAAAAAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318790" ref_strand="+" ref_description="SGN-E318790 [cTOB-11-D23]">
      <seq>tcatctccgcagtggcagtgtcttgtgtaggttatgtctgtgtcccgttatttcgtagtttgaaactccactctgtaatcaggaaggaggggcctgctcggcactctagtaagaaaggcactgctacaatgggcggattgtattttattccaattggagtaattgttgctgaaattattgttggattttcttctctggaagttcttggagcttctgcagcaactttaacttttgcagcaattggattacttgatgatttgataagtatgaggaataataatgttggcttgtctgctcgatttcggatcatgttggaggttgctgctgggacatttttctccttttggctgtatgcgtcggacatatcgtcaccctacagcatgaaaacagtggttcccctacccgcgcctcttgggctcatatgccttggaagactctatccttttttaacttcgttttgctttgcttccatggctaatggaattaatcttactgacggtctcgacggattggctggaggaacagccacattggcgttcattgcaatggctattgcagtgcttcctatatgttctgagctttccatatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="46918" stop="44939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46618" g_stop="46302" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46301" i_stop="46210" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46209" g_stop="46145" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="382" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46144" i_stop="45449" i_length="696">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45448" g_stop="45255" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="576" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45254" i_stop="45047" i_length="208">
            <donor d_prob="0.780" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45046" g_stop="45030" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="593" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E318790" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46618" e_stop="46302"/>
          <exon e_start="46209" e_stop="46145"/>
          <exon e_start="45448" e_stop="45255"/>
          <exon e_start="45046" e_stop="45030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCCGCAGTGGCAGTGTCTTGTGTAGGTTATGTCTGTGTCCCGTTATTTCGTAGTTTGAAACTCCACTCTGTAATCAGGAAGGAGGGGCCTGCTCGGCACTCTAGTAAGAAAGGCACTGCTACAATGGGCGGATTGTATTTTATTCCAATTGGAGTAATTGTTGCTGAAATTATTGTTGGATTTTCTTCTCTGGAAGTTCTTGGAGCTTCTGCAGCAACTTTAACTTTTGCAGCAATTGGATTACTTGATGATTTGATAAGTATGAGGAATAATAATGTTGGCTTGTCTGCTCGATTTCGGATCATGTTGGAGGTGAGCCTTTTTTCCTTTTTTTGTACTTTTTGCAAATCATACTTTTGCTTCTTGTTTCTCTGGAGTTGATGGTACTCCTCTCTGGTACACAGGTTGCTGCTGGGACATTTTTCTCCTTTTGGCTGTATGCGTCGGACATATCGTCACCCTACAGCATGTATACATTCTTGTAACTAATTTCATCAACCTTTTTATGATGGTAACTCACAAATCTATTTTAAATTGACAACTAGTTTTTCTTATTCAGTATATCAACAAAATTTAAGCTCATGTATTCTCACCCTTCAAATTGATGTTTCTTAATGAACTGGATTAGTCCCTAGTTTGCCTTTGGTCCTAACAAATTTGTATCCTGAATTTTCTAATTGGTCAATGCCGCATTTTGAATTTTGTAGCATTCCATAGTTGGATTAAAACTCTCTTACTTAAGGTTGCGACTAACTCAGGGGGCATATAAGAATGACAGGGGTGACCTATACCAAAAAAAAAAGGATGATAGGAATTACTGATCTTGATGACTTCCTAGCAGCATATACAAATGCTGGATGTTTTAGATACAACACTAATCTTCATTCTGTTTTATAGATCAGTTTCTTGCACATCTTCTAAAAAATTACAGTTCGGCTTTAGAATACAAAAATAAGAACGAATAAAGAATTCAAAGCCTATAGCCTTGCTTGACTCTTAGAGCTCACTTGGATATTCTGCTACAGAAGATGCAAACATGCTTCCTGTAGGCAGTATATAATGACAGAAATCTGTTCTTTCTCAGCTAGTTATTAAATCCAATGTGGTATATCATAAAAAATTGGTTCTGTATCACTTAAGGTTCATATCTTCTGTGTGCATGCAGGAAAACAGTGGTTCCCCTACCCGCGCCTCTTGGGCTCATATGCCTTGGAAGACTCTATCCTTTTTTAACTTCGTTTTGCTTTGCTTCCATGGCTAATGGAATTAATCTTACTGACGGTCTCGACGGATTGGCTGGAGGAACAGCCACATTGGCGTTCATTGCAATGGCTATTGCAGTGCTTCCTATATGTTCTGGTCAGTGCGTGAACTGTTGATCCTTGTGGTGTTAATTGCAATTCAACTGTACTGACTTCGTTGTCTTACTTAGTCCAATAGTGTTCATGCAAATTTTTGTGATGAAAAAAGGTTTCATTTTAATTTCCTAGAGAAGCTGTATCTTGAAACTTGCATTTTCTGAATGTCCATGATTCTTGCTGAGTATGGGTTTCTATGTCCAAAACAGAGCTTTCCATATTTGGA</genome_strand>
        <mrna_strand>TCATCTCCGCAGTGGCAGTGTCTTGTGTAGGTTATGTCTGTGTCCCGTTATTTCGTAGTTTGAAACTCCACTCTGTAATCAGGAAGGAGGGGCCTGCTCGGCACTCTAGTAAGAAAGGCACTGCTACAATGGGCGGATTGTATTTTATTCCAATTGGAGTAATTGTTGCTGAAATTATTGTTGGATTTTCTTCTCTGGAAGTTCTTGGAGCTTCTGCAGCAACTTTAACTTTTGCAGCAATTGGATTACTTGATGATTTGATAAGTATGAGGAATAATAATGTTGGCTTGTCTGCTCGATTTCGGATCATGTTGGAG............................................................................................GTTGCTGCTGGGACATTTTTCTCCTTTTGGCTGTATGCGTCGGACATATCGTCACCCTACAGCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAGTGGTTCCCCTACCCGCGCCTCTTGGGCTCATATGCCTTGGAAGACTCTATCCTTTTTTAACTTCGTTTTGCTTTGCTTCCATGGCTAATGGAATTAATCTTACTGACGGTCTCGACGGATTGGCTGGAGGAACAGCCACATTGGCGTTCATTGCAATGGCTATTGCAGTGCTTCCTATATGTTCTG................................................................................................................................................................................................................AGCTTTCCATATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572779" ref_strand="+" ref_description="SGN-E572779 [31986]">
      <seq>ctcttgtggattgttgtgcatggaaaattgttagattgcccctggctccactttacctgatgcgtccctttctcatctccgcagtggcagtgtcttgtgtaggttatgtctgtgtccctttatttcgtagtttgaaactccactctgtaatcaggaaggaggggcctgctcggcactctagtaagaagggaactgctacaatgggtggattgtattttattccaattggagtaattgttgctgaaattattgttgggttttcttctctggaagttcttggagcttctgcagcaactttaacttttgcagcaattggattacttgatgatttgataagtatgaggaataataatgttggcttatccgctcgatttcgaatcatgtcggaggtgagccttttttcctttttttttgtactttcggcaaatcatacttttgcttcttgtttctctggagttgacggtactcctctctggcacacaggtagctgctgggacatttttctccttttggctgtatgcatcagacatatcgtcaccctacagcatgtatacattcttgtaactaatttcatcaacctttttatgatggtaactcacaaatctatcttatattaacaactagtttttcttattcagtacatcaacaaaatttaagttcatgttttctcagtcttcacaattgatgtttctaaatgaactggattcatccctagtttggctttggtcctaaacaaattgtgtatccttgtaattttcctaacttgggtccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="46990" stop="45628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46690" g_stop="45955" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E572779" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46690" e_stop="45955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTGTGGATTGCTGTGCATGGAAAATTGTTAGATTGCCACTGGCTCCACTTTACCTAATGCGTCCCTTTCTCATCTCCGCAGTGGCAGTGTCTTGTGTAGGTTATGTCTGTGTCCCGTTATTTCGTAGTTTGAAACTCCACTCTGTAATCAGGAAGGAGGGGCCTGCTCGGCACTCTAGTAAGAAAGGCACTGCTACAATGGGCGGATTGTATTTTATTCCAATTGGAGTAATTGTTGCTGAAATTATTGTTGGATTTTCTTCTCTGGAAGTTCTTGGAGCTTCTGCAGCAACTTTAACTTTTGCAGCAATTGGATTACTTGATGATTTGATAAGTATGAGGAATAATAATGTTGGCTTGTCTGCTCGATTTCGGATCATGTTGGAGGTGAGCCTTTTTTCC--TTTTTTTGTACTTTTTGCAAATCATACTTTTGCTTCTTGTTTCTCTGGAGTTGATGGTACTCCTCTCTGGTACACAGGTTGCTGCTGGGACATTTTTCTCCTTTTGGCTGTATGCGTCGGACATATCGTCACCCTACAGCATGTATACATTCTTGTAACTAATTTCATCAACCTTTTTATGATGGTAACTCACAAATCTATTTTAAATTGACAACTAGTTTTTCTTATTCAGTATATCAACAAAATTTAAGCTCATGTATTCTCACCCTTCA-AATTGATGTTTCTTAATGAACTGGATTAGTCCCTAGTTTGCCTTTGGTCCTAACAAATTT</genome_strand>
        <mrna_strand>CTCTTGTGGATTGTTGTGCATGGAAAATTGTTAGATTGCCCCTGGCTCCACTTTACCTGATGCGTCCCTTTCTCATCTCCGCAGTGGCAGTGTCTTGTGTAGGTTATGTCTGTGTCCCTTTATTTCGTAGTTTGAAACTCCACTCTGTAATCAGGAAGGAGGGGCCTGCTCGGCACTCTAGTAAGAAGGGAACTGCTACAATGGGTGGATTGTATTTTATTCCAATTGGAGTAATTGTTGCTGAAATTATTGTTGGGTTTTCTTCTCTGGAAGTTCTTGGAGCTTCTGCAGCAACTTTAACTTTTGCAGCAATTGGATTACTTGATGATTTGATAAGTATGAGGAATAATAATGTTGGCTTATCCGCTCGATTTCGAATCATGTCGGAGGTGAGCCTTTTTTCCTTTTTTTTTGTACTTTCGGCAAATCATACTTTTGCTTCTTGTTTCTCTGGAGTTGACGGTACTCCTCTCTGGCACACAGGTAGCTGCTGGGACATTTTTCTCCTTTTGGCTGTATGCATCAGACATATCGTCACCCTACAGCATGTATACATTCTTGTAACTAATTTCATCAACCTTTTTATGATGGTAACTCACAAATCTATCTTATATTAACAACTAGTTTTTCTTATTCAGTACATCAACAAAATTTAAGTTCATGTTTTCTCAGTCTTCACAATTGATGTTTCTAAATGAACTGGATTCATCCCTAGTTTGGCTTTGGTCCTAAACAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546020" ref_strand="-" ref_description="SGN-E546020 [TUS-69-C18](-)">
      <seq>cgggcccccctcgagttttttttttccctctttcgccattcttctttgaactcagtatattcctttattcttctctctttctacaaaatcaaaccaattttcatacatatgtttgtttaatggagttgatgttcatgtgaatcggataattcttttgattttacactttgaaaaatgttagtcatgcgatctcaatcttgtggttcaaatttggatttgaattctgatttctatcgacttggggtttctcaatttcgaaaagggtctctgaatctgaaatttcagcgtttattgatcaattttcatcatctccgattaagctctcattttcctgtgaagatccgtagatcaagtgctaggcgttatgggttctgttcgcctcctaggcttcttcaagttcgagcaatggatgatgatgttggggtctcttcgtttcatgactggggagataataatggagcagtcgaatataggttctcatcaagtgaaggtgaagacagtgatggagatattttactacagccaatcacagatgttgatttgcctacctccaaggagcagctttattctgctgatgacaccgtaagaactcaccagctaacaatgcttggcagagcgtacaagagaaaaaggataaagtatggcattctaaacaacataggtctcataatgttctcgacggtgcttctgtctcttgtggattgctgtgcatggaaaattgttagattgccactggctccactttacctaatgcgtccctttctcatctccgcagtggcagtgtcttgtgtaggttatgtctgtgtcccattatttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="48665" stop="46263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48360" g_stop="48035" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="339" r_length="325" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48034" i_stop="47918" i_length="117">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47917" g_stop="47843" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="414" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47842" i_stop="47165" i_length="678">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47164" g_stop="46947" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="632" r_length="218" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46946" i_stop="46750" i_length="197">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46749" g_stop="46563" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="819" r_length="187" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E546020" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546020" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48360" e_stop="48035"/>
          <exon e_start="47917" e_stop="47843"/>
          <exon e_start="47164" e_stop="46947"/>
          <exon e_start="46749" e_stop="46563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATTTTTTTCCCTCTTTCCCCATTCTTCTTTGAACTCAGTATATTCCTTTATTCTTCTCTCTTTCTGCAAAATCAAACCAATTTTCATACATATGTTTGTTTAATGGAGTTGACGTTCATGTGAATCGGATAATCCTTTTGATTTTACACTTTGAAAAATGTTAGTCATGCGATCTCAATCTTGTGGTTCAAATTTGGATTTGAATTCTGATTTCTATCGACTTGGGGTTTCTCAATTTCGAAAAGGGTCTCTGAATCTGAAATTTCAGCGTTTATTGATCAATTTTCATCATCTCCGATTAAGCTCTCATTTTCCTGTGAAGGTAATACTGTGAATAGTCTTTGCAAAATACTATTATCGTTTTCGTACCTTTCAAGTGGGTTATTGATTAATTTGACTTTTTCTCTTTGTTTTTGGTTGCAATTTGTTTTTGATAAAGATCCGTAGATCAAGTGCTAGGCGTTATGGGTTCTGTTTGCCTCCTAGGCTTTTTCAAGTTCGAGCAATGGATGATGTAATTCTTCGCTACCTTTTTTTTTTATTGTTGTTATTCGTATTGTGTATTGCTGCTTTTTTCATTTAAGCTATGAGAAGATAGACTGTCTGATTTTCTAAACCAATTTTAGACATACTTATTAGTTTACTGTTCTATTTGGTAGGATGTAGAATTTCATTATCGGAAAATTTTGTTTCATGAAAGACGTTTTACCTAAAAAATTCATGTTTTAAAGTCATTTCTGTGTATACATTACGTCAGTGAAATATCGTGTTGGTGGAGGGAGGAAAGGTGTGAGGATGATTACCAGTAGCAAGGAATGAAAATATTGTTTCATGTTGGTTGGACAAGTGCTATGAAGTATGAAGAACAGAGTAGATACTGACAACAAGAGAACTAGTTTGGCTTAGGAAACTATTTTCCTCGAGAAAAACCTTTTCAAAAAATTCATCCACCAAAACAATGCTCAATTGGAGTTCTTCTTCGATGGGAATTATCAGGATTCTAATTGCTAAGACAGATTGAAGTGAGACCTGTCAGGTGTCCACTAAAAATATGTTTAGGCAACAGGAAAGAGGTGTACAAGAATGAGGATAAATGAAACAATATTCTATATAGATTTCACCCTGCTGCTATGGATCAAACCTAATACTAGTTCATTCTGTTGTATATGTCTTTTTCTTTTTTCTTATGTAGGATGTTGGGGTCTCTTCGTTTCATGACTGGGGAGATAATAATGGAGCAGTTGAATATAGGTTCTCATCAAGTGAAGGTGAAGACAGTGATGGAGATATTTTACTACAGCCAATCACGGATGTTGATTTGCCTACCTCCAAGGAGCAGCTTTATTCTGCTGACGACACCGTAAGAACTCACCAGCTAACAATGCTTGGCAGAGCGTACAAGAGAAAAAGGTAGATCTACTTCTACCAGTATAACTGGTACCTGTATATCTTTATATATGTTCAATGTGCCATATACTTTGCTGCTATTAAATTATTGTACTGATGAACTTAAAGGAGTGAAGATTGTCTGTTTAGCATTACTCTGGGGAGGTTGTTTTTCTTAATTTCTCCATTCTCTAAGTGCCTTTCAAACCCCATATATGCAGGATAAAATATGGCATTCTAAACAACATAGGTCTCATAATGTTCTCGACGGTGCTTCTGTCTCTTGTGGATTGCTGTGCATGGAAAATTGTTAGATTGCCACTGGCTCCACTTTACCTAATGCGTCCCTTTCTCATCTCCGCAGTGGCAGTGTCTTGTGTAGGTTATGTCTGTGTCCCGTTATTTCGT</genome_strand>
        <mrna_strand>G-TTTTTTTTTTCCCTCTTTCGCCATTCTTCTTTGAACTCAGTATATTCCTTTATTCTTCTCTCTTTCTACAAAATCAAACCAATTTTCATACATATGTTTGTTTAATGGAGTTGATGTTCATGTGAATCGGATAATTCTTTTGATTTTACACTTTGAAAAATGTTAGTCATGCGATCTCAATCTTGTGGTTCAAATTTGGATTTGAATTCTGATTTCTATCGACTTGGGGTTTCTCAATTTCGAAAAGGGTCTCTGAATCTGAAATTTCAGCGTTTATTGATCAATTTTCATCATCTCCGATTAAGCTCTCATTTTCCTGTGAAG.....................................................................................................................ATCCGTAGATCAAGTGCTAGGCGTTATGGGTTCTGTTCGCCTCCTAGGCTTCTTCAAGTTCGAGCAATGGATGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGGGGTCTCTTCGTTTCATGACTGGGGAGATAATAATGGAGCAGTCGAATATAGGTTCTCATCAAGTGAAGGTGAAGACAGTGATGGAGATATTTTACTACAGCCAATCACAGATGTTGATTTGCCTACCTCCAAGGAGCAGCTTTATTCTGCTGATGACACCGTAAGAACTCACCAGCTAACAATGCTTGGCAGAGCGTACAAGAGAAAAAG.....................................................................................................................................................................................................GATAAAGTATGGCATTCTAAACAACATAGGTCTCATAATGTTCTCGACGGTGCTTCTGTCTCTTGTGGATTGCTGTGCATGGAAAATTGTTAGATTGCCACTGGCTCCACTTTACCTAATGCGTCCCTTTCTCATCTCCGCAGTGGCAGTGTCTTGTGTAGGTTATGTCTGTGTCCCATTATTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546027" ref_strand="-" ref_description="SGN-E546027 [TUS-69-C22](-)">
      <seq>tcttctttgaactcagtatattcctttattcttctctctttctacaaaatcaaaccaattttcatacatatgtttgtttaatggagttgatgttcatgtgaatcggataattcttttgattttacactttgaaaaatgttagtcatgcgatctcaatcttgtggttcaaatttggatttgaattctgatttctatcgacttggggtttctcaatttcgaaaagggtctctgaatctgaaatttcagcgtttattgatcaattttcatcatctccgattaagctctcattttcctgtgaagatccgtagatcaagtgctaggcgttatgggttctgttcgcctcctaggcttcttcaagttcgagcaatggatgatgatgttggggtctcttcgtttcatgactggggagataataatggagcagtcgaatataggttctcatcaagtgaaggtgaagacagtgatggagatattttactacagccaatcacagatgttgatttgcctacctccaaggagcagctttattctgctgatgacaccgtaagaactcaccagctaacaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="48634" stop="46672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48334" g_stop="48035" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48034" i_stop="47918" i_length="117">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47917" g_stop="47843" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="375" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47842" i_stop="47165" i_length="678">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47164" g_stop="46972" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="568" r_length="193" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E546027" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546027" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48334" e_stop="48035"/>
          <exon e_start="47917" e_stop="47843"/>
          <exon e_start="47164" e_stop="46972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTTGAACTCAGTATATTCCTTTATTCTTCTCTCTTTCTGCAAAATCAAACCAATTTTCATACATATGTTTGTTTAATGGAGTTGACGTTCATGTGAATCGGATAATCCTTTTGATTTTACACTTTGAAAAATGTTAGTCATGCGATCTCAATCTTGTGGTTCAAATTTGGATTTGAATTCTGATTTCTATCGACTTGGGGTTTCTCAATTTCGAAAAGGGTCTCTGAATCTGAAATTTCAGCGTTTATTGATCAATTTTCATCATCTCCGATTAAGCTCTCATTTTCCTGTGAAGGTAATACTGTGAATAGTCTTTGCAAAATACTATTATCGTTTTCGTACCTTTCAAGTGGGTTATTGATTAATTTGACTTTTTCTCTTTGTTTTTGGTTGCAATTTGTTTTTGATAAAGATCCGTAGATCAAGTGCTAGGCGTTATGGGTTCTGTTTGCCTCCTAGGCTTTTTCAAGTTCGAGCAATGGATGATGTAATTCTTCGCTACCTTTTTTTTTTATTGTTGTTATTCGTATTGTGTATTGCTGCTTTTTTCATTTAAGCTATGAGAAGATAGACTGTCTGATTTTCTAAACCAATTTTAGACATACTTATTAGTTTACTGTTCTATTTGGTAGGATGTAGAATTTCATTATCGGAAAATTTTGTTTCATGAAAGACGTTTTACCTAAAAAATTCATGTTTTAAAGTCATTTCTGTGTATACATTACGTCAGTGAAATATCGTGTTGGTGGAGGGAGGAAAGGTGTGAGGATGATTACCAGTAGCAAGGAATGAAAATATTGTTTCATGTTGGTTGGACAAGTGCTATGAAGTATGAAGAACAGAGTAGATACTGACAACAAGAGAACTAGTTTGGCTTAGGAAACTATTTTCCTCGAGAAAAACCTTTTCAAAAAATTCATCCACCAAAACAATGCTCAATTGGAGTTCTTCTTCGATGGGAATTATCAGGATTCTAATTGCTAAGACAGATTGAAGTGAGACCTGTCAGGTGTCCACTAAAAATATGTTTAGGCAACAGGAAAGAGGTGTACAAGAATGAGGATAAATGAAACAATATTCTATATAGATTTCACCCTGCTGCTATGGATCAAACCTAATACTAGTTCATTCTGTTGTATATGTCTTTTTCTTTTTTCTTATGTAGGATGTTGGGGTCTCTTCGTTTCATGACTGGGGAGATAATAATGGAGCAGTTGAATATAGGTTCTCATCAAGTGAAGGTGAAGACAGTGATGGAGATATTTTACTACAGCCAATCACGGATGTTGATTTGCCTACCTCCAAGGAGCAGCTTTATTCTGCTGACGACACCGTAAGAACTCACCAGCTAACAATGC</genome_strand>
        <mrna_strand>TCTTCTTTGAACTCAGTATATTCCTTTATTCTTCTCTCTTTCTACAAAATCAAACCAATTTTCATACATATGTTTGTTTAATGGAGTTGATGTTCATGTGAATCGGATAATTCTTTTGATTTTACACTTTGAAAAATGTTAGTCATGCGATCTCAATCTTGTGGTTCAAATTTGGATTTGAATTCTGATTTCTATCGACTTGGGGTTTCTCAATTTCGAAAAGGGTCTCTGAATCTGAAATTTCAGCGTTTATTGATCAATTTTCATCATCTCCGATTAAGCTCTCATTTTCCTGTGAAG.....................................................................................................................ATCCGTAGATCAAGTGCTAGGCGTTATGGGTTCTGTTCGCCTCCTAGGCTTCTTCAAGTTCGAGCAATGGATGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGGGGTCTCTTCGTTTCATGACTGGGGAGATAATAATGGAGCAGTCGAATATAGGTTCTCATCAAGTGAAGGTGAAGACAGTGATGGAGATATTTTACTACAGCCAATCACAGATGTTGATTTGCCTACCTCCAAGGAGCAGCTTTATTCTGCTGATGACACCGTAAGAACTCACCAGCTAACAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716394" ref_strand="+" ref_description="SGN-E716394 [FB16DG03]">
      <seq>tgcgagtcaagcttctcaagaaaataaacaagcctggccaaagcaagaaaggttggagagatccagattctgataggaataacaatatccaagcatctgatccggcagttaatgaggaacacaattcaagtgagcatcgtgttgattcacaagacgaagaggagggtgaccatctatcaaaggagaccattggtgagcatgcacaaaaggagaaaaatgggcccagggtgccaaccagaaatcgaggccgtggaaggagaaacaagcgtggcacaaatggacatggccatggaactacttcgtccactcatttggttgaaccctcaaaacctcctcctggtccaagaatgcccgatggaaccagaggatttgctatgggaagaggccgacctctttcttcatctccaagctaatgatgtcttgttaagtgtgttttactgcaaatataatcttatgttttgaggattgtgttgctatgtgaaaaatgcttggatgatgaatttcaatggttggtgctttgaaatgtactcatgtgttatagaattgtgggttcctggagacagcggtatataacattgtactattgtgccattatgttattaaagaccattttttttgtttggccacttgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="52119" stop="49054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51819" g_stop="51794" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51793" i_stop="51699" i_length="95">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51698" g_stop="51564" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="161" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51563" i_stop="49911" i_length="1653">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49910" g_stop="49787" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="285" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49786" i_stop="49700" i_length="87">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49699" g_stop="49355" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="630" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="631" polyA_stop="644"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E716394" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51819" e_stop="51794"/>
          <exon e_start="51698" e_stop="51564"/>
          <exon e_start="49910" e_stop="49787"/>
          <exon e_start="49699" e_stop="49355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGAGTCAAGCTTCTCAAGAAAATAGTAATTTGTTTTGTCTCCTTATCTTCCTTTCCTTAATCATCGAATAATATTGTCATTGGTGTATGCTTGTATAACATGTTATATTAACTCTTCAGAACAAGCCTGGCCAAAGCAAGAAAGGTTGGAGAGATCCAGATTCTGATAGGAATAACAATATCCAAGCATCTGATCCGGCAGTTAATGAGGAACACAATTCAAGTGAGCATCGTGTTGATTCACAAGACGAAGAGGTTAATCATTATTACTTTGCAATCTTTAGATTTATGTCTAAATATAGTTGTTTAGTATATTCGCTTTAGTGGCTAGAAAACAGAAGAGTAATGCCTACTTTATTATGGATATTTTCCAAGTTTTGATTAACATACCTTAAGAAATAGGGTGAAGTGGATAACAAAAGAAGAAAAAAGTTGATGAAAACTGATGGATGGAAGTCAGGAAGTTGTTGAAAGTTGATAAAATAATTAAAGAGCCATCTTGTATGCTGTTATGGCTGGAACAGAATTCAAAATTTCTTTCTCCCAAAGAGAAAATATTCTCAATCATTTTCCATACCTTCACATATGGCAACTGGCACATACAGAATCAACCTCATTTTAGACACACTTCCCATGAAACATAACTCCACCCTTGCTCTTCTCAAAGATTTTTCTTAGGGAGCTCACCGAGAAGCATATTTCAGTAACACTCTATCCCCCTCAATCATTATCACGCCTTGAAACCACAGAATCCCAAAATCATCTCCTCACTCCACCAGTGCACTCCCTTCTTCCTCCTTTTCTCACTATTCCCTCTTTCATCAATGTGGCAATTCATATTTCATCTCATCTACTCGTACATCACTCACATCCATTGTAGAAAATCCCACTAACACCTCTAACTCTTCTTGTTTTTTACACTTTTCATTCACAAAATACTTGACCAAAAGCTTAGTCTGTAAAATCCAAAAAAGAGCCCAGCTGGAAATGTCAACTGACATAACAAAAAGCTTTATCCTCTCCATTTTTTGGTTCAATCAACGTCTATGGTTCTTTTCCAATTCCTCATCAAAGCCTTATCAAGGTTTGAGAGAGGGAAAAGGGTTGGATTGAGTTGAAAATTTTAGGTCATGGCTTGGGAAGTTTTTCTTAAAAAAGAGAGGGAGGTAAAAAAAGATCATTAAAGATATCTGTATTTCAGGGCTCAGTTCCTTTATGCTGGAAAAGAGTGAGGGAAATAATAATGGGGAACAGAGGAAAGTGGGTCTAAATAACACTTGAAATGCTTTTATAAACCCCTAGTCTATCAAGTCACCACACTGGGTAGTGTGAGACGCATTTTGAGAAAGTACTGTGTCTGGGGAAATATTAGGTGCAAAGTTTTATATGTTATTGATAATTCGGATCAAGAGGGGAAGTTGTGTATTCTCCCAAAATATTTTCTTTCACACGAGACACATCTGCCAAATGGATTTAGGGTGTTTATTCTTTAAAAAAAGTATGAAAAGGTGAACAAAGAGATAAATGTTCAAACTTGTTTGATTAGGAAAGGAGTATTATAGTCATCGTTATGCAAGAAAGTTCAAACAGTACCTTGTTGTTTACTCCCTGTCTTTATAGTTCGTGGTATGGTTATCCACCAATCACTCGATTGTCAGTCCAGTTTCTTTTCGATTGTGCCAATTGTCAAGTCAATCAACTTTTTACTCATTCTTGAACTGTCTTCTTATGTCGTACACTAGACAAATAATTGTCTAGCTGCCATGTTCACTGATGGCAATAGTAAAACTCTGCAGTTCATGGTTTCGTAAGGATCAATGAAAGCGAAATTTCAGGATTAGTGGAGTACATTATCACATTATCAATATCTCTTGCATATTGTTGATACATGTATTTTTTGCATTTCAGGAGGGTGACCATCTATCAAAGGAGACCATTGGTGAGCATGCACAAAAGGAGAAAAATGGGCCCAGGGTGCCAACCAGAAATCGAGGCCGTGGAAGGAGAAACAAGCGTGGCACAAATGGACATGGTAGATCTCCGGAAACTGCTTATTCTCTCCCTCTTGCTTCTCCTTATTCTCTTGAATTTAATGATATTTTTGTTTAAACATCACCAGGCCATGGAACTACTTCGTCCACTCATTTGGTTGAACCCTCAAAACCTCCTCCTGGTCCAAGAATGCCCGATGGAACCAGAGGATTTGCTATGGGAAGAGGCCGACCTCTTTCTTCATCTCCAAGCTAATGATGTCTTGTTAAGTGTGTTTTACTGCAAATATAATCTTATGTTTTGAGGATTGTGTTGCTATGTGAAAAATGCTTGGATGATGAATTTCAATGGTTGGTGCTTTGAAATGTACTCATGTGTTATAGAATTGTGGGTTCCTGGAGACAGCGGTATATAACATTGTACTATTGTGCCATTATGTTATTAAAGACCATTTTTTTTGTTTGGCCACTTG</genome_strand>
        <mrna_strand>TGCGAGTCAAGCTTCTCAAGAAAATA...............................................................................................AACAAGCCTGGCCAAAGCAAGAAAGGTTGGAGAGATCCAGATTCTGATAGGAATAACAATATCCAAGCATCTGATCCGGCAGTTAATGAGGAACACAATTCAAGTGAGCATCGTGTTGATTCACAAGACGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTGACCATCTATCAAAGGAGACCATTGGTGAGCATGCACAAAAGGAGAAAAATGGGCCCAGGGTGCCAACCAGAAATCGAGGCCGTGGAAGGAGAAACAAGCGTGGCACAAATGGACATG.......................................................................................GCCATGGAACTACTTCGTCCACTCATTTGGTTGAACCCTCAAAACCTCCTCCTGGTCCAAGAATGCCCGATGGAACCAGAGGATTTGCTATGGGAAGAGGCCGACCTCTTTCTTCATCTCCAAGCTAATGATGTCTTGTTAAGTGTGTTTTACTGCAAATATAATCTTATGTTTTGAGGATTGTGTTGCTATGTGAAAAATGCTTGGATGATGAATTTCAATGGTTGGTGCTTTGAAATGTACTCATGTGTTATAGAATTGTGGGTTCCTGGAGACAGCGGTATATAACATTGTACTATTGTGCCATTATGTTATTAAAGACCATTTTTTTTGTTTGGCCACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710518" ref_strand="+" ref_description="SGN-E710518 [FA55CG06]">
      <seq>agacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgagattaaagatcccaaggtttgtactgtattggtggaaaatttacctgaggatcattcagtgaacaaccttcggagcatatttggccaggctggaaatgtgaagcatattaccattcgtgatccacacactgaaagagatcccagaaaatgcacaactgcagagaagctgctcagtggtaagttgcatgctctcgtggaatataacacagtggaagctgctgaaaaagctgtgaccattttgaatgatgaacaggattggagatttggcttgcgagtcaagcttctcaagaaaataaacaagcctggccaaagcaagaaaggttggagagatccagattctgataggaataacaatatccaagcatctgatccggcagttaatgaggaacacaattcaagtgagcatcgtgttgattcacaagacgaagaggagggtgaccatctatcaaaggagaccattggtgagcatgcacaaaaggagaaaaatgggcccagggtgccaaccagaaatcgaggccgtggaaggagaaacaagcgtggcacaaatggacatggccatggaactacttcgtccactcatttggttgaaccctcaaaacctcctcctggtccaagaatgcccgatggaaccagaggatttgctatgggaagaggccgacctctttcttcatctccaagctaatgatgtcttgttaagtgtgttttactgcaaatataatcttatgttttgaggattgtgttgctatgtgaaaaatgcttggatgatgaatttcaatggttggggctttgaaatgtactcctgtgttataaaaattgggggttccttgaaaacagcggtatataacattgtactattggggcattaatggtaataaagaacattttttttgtttggcccaccttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="53145" stop="49054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52845" g_stop="52802" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="116" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52517" g_stop="52438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="196" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52344" g_stop="52260" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="281" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52259" i_stop="51990" i_length="270">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51989" g_stop="51942" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="329" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51941" i_stop="51860" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51859" g_stop="51794" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="395" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51793" i_stop="51699" i_length="95">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51698" g_stop="51564" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="530" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="51563" i_stop="49911" i_length="1653">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="49910" g_stop="49787" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="654" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="49786" i_stop="49700" i_length="87">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="49699" g_stop="49363" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="994" r_length="340" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1004" polyA_stop="1017"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E710518" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>991</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52845" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52438"/>
          <exon e_start="52344" e_stop="52260"/>
          <exon e_start="51989" e_stop="51942"/>
          <exon e_start="51859" e_stop="51794"/>
          <exon e_start="51698" e_stop="51564"/>
          <exon e_start="49910" e_stop="49787"/>
          <exon e_start="49699" e_stop="49363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAGGTATGTAATTACAGCTCCTACATCAGAGCATCTGTAGACCTGACTAGTGTGAAGCATGGGATGGGTCTCAAAACTGTTTACTTACATTTAGAATTTTGGTTTTCCTAGTTGTTCATGAGAAGTATCATCACGTTTGGCATCTGACTGGCCATGCTGTTTAGTTTGCATCTAACCACATTGAAGAGCATATGAGAAATTTTGAAGTGGTTGGATTATATTATTTCTTCATGTATGCTTTGGTTATTTCTTCTTCGTTTTTTCTTATTATAGTTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTGAAAAAGCTGTGAGTGTTAATACAGGTTCCTATTCATTTTGGCTGTGTCATTTCATAAAATCTGTTGTTCATTTTGTTGGTGTCTTTTCAGGTGACCATTTTGAATGATGAACAGGATTGGAGATTTGGCTTGCGAGTCAAGCTTCTCAAGAAAATAGTAATTTGTTTTGTCTCCTTATCTTCCTTTCCTTAATCATCGAATAATATTGTCATTGGTGTATGCTTGTATAACATGTTATATTAACTCTTCAGAACAAGCCTGGCCAAAGCAAGAAAGGTTGGAGAGATCCAGATTCTGATAGGAATAACAATATCCAAGCATCTGATCCGGCAGTTAATGAGGAACACAATTCAAGTGAGCATCGTGTTGATTCACAAGACGAAGAGGTTAATCATTATTACTTTGCAATCTTTAGATTTATGTCTAAATATAGTTGTTTAGTATATTCGCTTTAGTGGCTAGAAAACAGAAGAGTAATGCCTACTTTATTATGGATATTTTCCAAGTTTTGATTAACATACCTTAAGAAATAGGGTGAAGTGGATAACAAAAGAAGAAAAAAGTTGATGAAAACTGATGGATGGAAGTCAGGAAGTTGTTGAAAGTTGATAAAATAATTAAAGAGCCATCTTGTATGCTGTTATGGCTGGAACAGAATTCAAAATTTCTTTCTCCCAAAGAGAAAATATTCTCAATCATTTTCCATACCTTCACATATGGCAACTGGCACATACAGAATCAACCTCATTTTAGACACACTTCCCATGAAACATAACTCCACCCTTGCTCTTCTCAAAGATTTTTCTTAGGGAGCTCACCGAGAAGCATATTTCAGTAACACTCTATCCCCCTCAATCATTATCACGCCTTGAAACCACAGAATCCCAAAATCATCTCCTCACTCCACCAGTGCACTCCCTTCTTCCTCCTTTTCTCACTATTCCCTCTTTCATCAATGTGGCAATTCATATTTCATCTCATCTACTCGTACATCACTCACATCCATTGTAGAAAATCCCACTAACACCTCTAACTCTTCTTGTTTTTTACACTTTTCATTCACAAAATACTTGACCAAAAGCTTAGTCTGTAAAATCCAAAAAAGAGCCCAGCTGGAAATGTCAACTGACATAACAAAAAGCTTTATCCTCTCCATTTTTTGGTTCAATCAACGTCTATGGTTCTTTTCCAATTCCTCATCAAAGCCTTATCAAGGTTTGAGAGAGGGAAAAGGGTTGGATTGAGTTGAAAATTTTAGGTCATGGCTTGGGAAGTTTTTCTTAAAAAAGAGAGGGAGGTAAAAAAAGATCATTAAAGATATCTGTATTTCAGGGCTCAGTTCCTTTATGCTGGAAAAGAGTGAGGGAAATAATAATGGGGAACAGAGGAAAGTGGGTCTAAATAACACTTGAAATGCTTTTATAAACCCCTAGTCTATCAAGTCACCACACTGGGTAGTGTGAGACGCATTTTGAGAAAGTACTGTGTCTGGGGAAATATTAGGTGCAAAGTTTTATATGTTATTGATAATTCGGATCAAGAGGGGAAGTTGTGTATTCTCCCAAAATATTTTCTTTCACACGAGACACATCTGCCAAATGGATTTAGGGTGTTTATTCTTTAAAAAAAGTATGAAAAGGTGAACAAAGAGATAAATGTTCAAACTTGTTTGATTAGGAAAGGAGTATTATAGTCATCGTTATGCAAGAAAGTTCAAACAGTACCTTGTTGTTTACTCCCTGTCTTTATAGTTCGTGGTATGGTTATCCACCAATCACTCGATTGTCAGTCCAGTTTCTTTTCGATTGTGCCAATTGTCAAGTCAATCAACTTTTTACTCATTCTTGAACTGTCTTCTTATGTCGTACACTAGACAAATAATTGTCTAGCTGCCATGTTCACTGATGGCAATAGTAAAACTCTGCAGTTCATGGTTTCGTAAGGATCAATGAAAGCGAAATTTCAGGATTAGTGGAGTACATTATCACATTATCAATATCTCTTGCATATTGTTGATACATGTATTTTTTGCATTTCAGGAGGGTGACCATCTATCAAAGGAGACCATTGGTGAGCATGCACAAAAGGAGAAAAATGGGCCCAGGGTGCCAACCAGAAATCGAGGCCGTGGAAGGAGAAACAAGCGTGGCACAAATGGACATGGTAGATCTCCGGAAACTGCTTATTCTCTCCCTCTTGCTTCTCCTTATTCTCTTGAATTTAATGATATTTTTGTTTAAACATCACCAGGCCATGGAACTACTTCGTCCACTCATTTGGTTGAACCCTCAAAACCTCCTCCTGGTCCAAGAATGCCCGATGGAACCAGAGGATTTGCTATGGGAAGAGGCCGACCTCTTTCTTCATCTCCAAGCTAATGATGTCTTGTTAAGTGTGTTTTACTGCAAATATAATCTTATGTTTTGAGGATTGTGTTGCTATGTGAAAAATGCTTGGATGATGAATTTCAATGGTTGGTGCTTTGAAATGTACTCATGTGTTAT-AGAATTGTGGGTTCC-TGGAGACAGCGGTATATAACATTGTACTATTGTGCCATT-ATGTTATTAAAGACCATTTTTTTTGTTTG</genome_strand>
        <mrna_strand>AGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAA.............................................................................................TGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAG..............................................................................................................................................................................................................................................................................TTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTGAAAAAGCT..................................................................................GTGACCATTTTGAATGATGAACAGGATTGGAGATTTGGCTTGCGAGTCAAGCTTCTCAAGAAAATA...............................................................................................AACAAGCCTGGCCAAAGCAAGAAAGGTTGGAGAGATCCAGATTCTGATAGGAATAACAATATCCAAGCATCTGATCCGGCAGTTAATGAGGAACACAATTCAAGTGAGCATCGTGTTGATTCACAAGACGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTGACCATCTATCAAAGGAGACCATTGGTGAGCATGCACAAAAGGAGAAAAATGGGCCCAGGGTGCCAACCAGAAATCGAGGCCGTGGAAGGAGAAACAAGCGTGGCACAAATGGACATG.......................................................................................GCCATGGAACTACTTCGTCCACTCATTTGGTTGAACCCTCAAAACCTCCTCCTGGTCCAAGAATGCCCGATGGAACCAGAGGATTTGCTATGGGAAGAGGCCGACCTCTTTCTTCATCTCCAAGCTAATGATGTCTTGTTAAGTGTGTTTTACTGCAAATATAATCTTATGTTTTGAGGATTGTGTTGCTATGTGAAAAATGCTTGGATGATGAATTTCAATGGTTGGGGCTTTGAAATGTACTCCTGTGTTATAAAAATTGGGGGTTCCTTGAAAACAGCGGTATATAACATTGTACTATTGGGGCATTAATGGTAATAAAGAACATTTTTTTTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350635" ref_strand="-" ref_description="SGN-E350635 [cTOS-5-P24]">
      <seq>caaaaggagaaaaatgggcccagggtgccaaccagaaatcgaggccgtggaaggagaaacaagcgtggcacaaatggacatggccatggaactacttcgtccactcatttggttgaaccctcaaaacctcctcctggtccaagaatgcccgatggaaccagaggatttgctatgggaagaggccgacctctttcttcatctccaagctaatgatgtcttgttaagtgtgttttactgcaaatataatcttatgtttcgaggattgtgttgctatgtgaaaaatgcttggatgatgaatttcaatggttggtgctttgaaatgtactcatgtgttatagaattgtgggttcctggagacagcggtatataacattgtactattgtgccattatgttattaaagaccattttttttgttaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="50168" stop="49065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49868" g_stop="49787" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49786" i_stop="49700" i_length="87">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49699" g_stop="49368" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="414" r_length="332" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="418" polyA_stop="443"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E350635" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350635" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49868" e_stop="49787"/>
          <exon e_start="49699" e_stop="49368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGGAGAAAAATGGGCCCAGGGTGCCAACCAGAAATCGAGGCCGTGGAAGGAGAAACAAGCGTGGCACAAATGGACATGGTAGATCTCCGGAAACTGCTTATTCTCTCCCTCTTGCTTCTCCTTATTCTCTTGAATTTAATGATATTTTTGTTTAAACATCACCAGGCCATGGAACTACTTCGTCCACTCATTTGGTTGAACCCTCAAAACCTCCTCCTGGTCCAAGAATGCCCGATGGAACCAGAGGATTTGCTATGGGAAGAGGCCGACCTCTTTCTTCATCTCCAAGCTAATGATGTCTTGTTAAGTGTGTTTTACTGCAAATATAATCTTATGTTTTGAGGATTGTGTTGCTATGTGAAAAATGCTTGGATGATGAATTTCAATGGTTGGTGCTTTGAAATGTACTCATGTGTTATAGAATTGTGGGTTCCTGGAGACAGCGGTATATAACATTGTACTATTGTGCCATTATGTTATTAAAGACCATTTTTTTT</genome_strand>
        <mrna_strand>CAAAAGGAGAAAAATGGGCCCAGGGTGCCAACCAGAAATCGAGGCCGTGGAAGGAGAAACAAGCGTGGCACAAATGGACATG.......................................................................................GCCATGGAACTACTTCGTCCACTCATTTGGTTGAACCCTCAAAACCTCCTCCTGGTCCAAGAATGCCCGATGGAACCAGAGGATTTGCTATGGGAAGAGGCCGACCTCTTTCTTCATCTCCAAGCTAATGATGTCTTGTTAAGTGTGTTTTACTGCAAATATAATCTTATGTTTCGAGGATTGTGTTGCTATGTGAAAAATGCTTGGATGATGAATTTCAATGGTTGGTGCTTTGAAATGTACTCATGTGTTATAGAATTGTGGGTTCCTGGAGACAGCGGTATATAACATTGTACTATTGTGCCATTATGTTATTAAAGACCATTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701992" ref_strand="+" ref_description="SGN-E701992 [FA17CA09]">
      <seq>agaaaggtgaagcgacttcatcctcttccattaagtgagattaaagatcccaaggtttgtactgtattggtggaaaatttacctgaggatcattcagtgaacaaccttcggagcatatttggccaggctggaaatgtgaagcatattaccattcgtgatccacacactgaaagagatcccagaaaatgcacaactgcagagaagctgctcagtggtaagttgcatgctctcgtggaatataacacagtggaagctgctgaaaaagctgtgaccattttgaatgatgaacaggattggagatttggcttgcgagtcaagcttctcaagaaaataaacaagcctggccaaagcaagaaaggttggagagatccagattctgataggaataacaagatccaagcatctgatccggcagttaatgaggaacacaattcaagtgagcatcgtgttgattcacaagacgaagaggagggtgaccatctatcaaaggagaccattggtgagcatgcacaaaaggagaaaaatgggcccagggtgccaaccagaaatcgaggccgtggaaggagaaacaagcgtggcacaaatggacatggccatggaactacttcgtccactcatttggttgaaccctcaaaacctcctcctggtccaagaatgcccgatggaaccagaggatttgctatgggaagaggccgacctctttcttcatctccaagctaatgatgtcttgttaagtgtgttttactgcaaatataatcttatgttttgaggattgtgttgctatgtgaaaaatgcttggatgatgaatttcaatggttggtgctttngaatgtactcatgtgttatagaattgtgggttcctggagacagcggtatataacattgtactattgtgccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="52955" stop="49092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52655" g_stop="52602" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52517" g_stop="52438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="134" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52344" g_stop="52260" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="219" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52259" i_stop="51990" i_length="270">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51989" g_stop="51942" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="267" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51941" i_stop="51860" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51859" g_stop="51794" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="333" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51793" i_stop="51699" i_length="95">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51698" g_stop="51564" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="468" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51563" i_stop="49911" i_length="1653">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49910" g_stop="49787" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="592" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="49786" i_stop="49700" i_length="87">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="49699" g_stop="49392" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="900" r_length="308" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E701992" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52655" e_stop="52602"/>
          <exon e_start="52517" e_stop="52438"/>
          <exon e_start="52344" e_stop="52260"/>
          <exon e_start="51989" e_stop="51942"/>
          <exon e_start="51859" e_stop="51794"/>
          <exon e_start="51698" e_stop="51564"/>
          <exon e_start="49910" e_stop="49787"/>
          <exon e_start="49699" e_stop="49392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAGGTATGTAATTACAGCTCCTACATCAGAGCATCTGTAGACCTGACTAGTGTGAAGCATGGGATGGGTCTCAAAACTGTTTACTTACATTTAGAATTTTGGTTTTCCTAGTTGTTCATGAGAAGTATCATCACGTTTGGCATCTGACTGGCCATGCTGTTTAGTTTGCATCTAACCACATTGAAGAGCATATGAGAAATTTTGAAGTGGTTGGATTATATTATTTCTTCATGTATGCTTTGGTTATTTCTTCTTCGTTTTTTCTTATTATAGTTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTGAAAAAGCTGTGAGTGTTAATACAGGTTCCTATTCATTTTGGCTGTGTCATTTCATAAAATCTGTTGTTCATTTTGTTGGTGTCTTTTCAGGTGACCATTTTGAATGATGAACAGGATTGGAGATTTGGCTTGCGAGTCAAGCTTCTCAAGAAAATAGTAATTTGTTTTGTCTCCTTATCTTCCTTTCCTTAATCATCGAATAATATTGTCATTGGTGTATGCTTGTATAACATGTTATATTAACTCTTCAGAACAAGCCTGGCCAAAGCAAGAAAGGTTGGAGAGATCCAGATTCTGATAGGAATAACAATATCCAAGCATCTGATCCGGCAGTTAATGAGGAACACAATTCAAGTGAGCATCGTGTTGATTCACAAGACGAAGAGGTTAATCATTATTACTTTGCAATCTTTAGATTTATGTCTAAATATAGTTGTTTAGTATATTCGCTTTAGTGGCTAGAAAACAGAAGAGTAATGCCTACTTTATTATGGATATTTTCCAAGTTTTGATTAACATACCTTAAGAAATAGGGTGAAGTGGATAACAAAAGAAGAAAAAAGTTGATGAAAACTGATGGATGGAAGTCAGGAAGTTGTTGAAAGTTGATAAAATAATTAAAGAGCCATCTTGTATGCTGTTATGGCTGGAACAGAATTCAAAATTTCTTTCTCCCAAAGAGAAAATATTCTCAATCATTTTCCATACCTTCACATATGGCAACTGGCACATACAGAATCAACCTCATTTTAGACACACTTCCCATGAAACATAACTCCACCCTTGCTCTTCTCAAAGATTTTTCTTAGGGAGCTCACCGAGAAGCATATTTCAGTAACACTCTATCCCCCTCAATCATTATCACGCCTTGAAACCACAGAATCCCAAAATCATCTCCTCACTCCACCAGTGCACTCCCTTCTTCCTCCTTTTCTCACTATTCCCTCTTTCATCAATGTGGCAATTCATATTTCATCTCATCTACTCGTACATCACTCACATCCATTGTAGAAAATCCCACTAACACCTCTAACTCTTCTTGTTTTTTACACTTTTCATTCACAAAATACTTGACCAAAAGCTTAGTCTGTAAAATCCAAAAAAGAGCCCAGCTGGAAATGTCAACTGACATAACAAAAAGCTTTATCCTCTCCATTTTTTGGTTCAATCAACGTCTATGGTTCTTTTCCAATTCCTCATCAAAGCCTTATCAAGGTTTGAGAGAGGGAAAAGGGTTGGATTGAGTTGAAAATTTTAGGTCATGGCTTGGGAAGTTTTTCTTAAAAAAGAGAGGGAGGTAAAAAAAGATCATTAAAGATATCTGTATTTCAGGGCTCAGTTCCTTTATGCTGGAAAAGAGTGAGGGAAATAATAATGGGGAACAGAGGAAAGTGGGTCTAAATAACACTTGAAATGCTTTTATAAACCCCTAGTCTATCAAGTCACCACACTGGGTAGTGTGAGACGCATTTTGAGAAAGTACTGTGTCTGGGGAAATATTAGGTGCAAAGTTTTATATGTTATTGATAATTCGGATCAAGAGGGGAAGTTGTGTATTCTCCCAAAATATTTTCTTTCACACGAGACACATCTGCCAAATGGATTTAGGGTGTTTATTCTTTAAAAAAAGTATGAAAAGGTGAACAAAGAGATAAATGTTCAAACTTGTTTGATTAGGAAAGGAGTATTATAGTCATCGTTATGCAAGAAAGTTCAAACAGTACCTTGTTGTTTACTCCCTGTCTTTATAGTTCGTGGTATGGTTATCCACCAATCACTCGATTGTCAGTCCAGTTTCTTTTCGATTGTGCCAATTGTCAAGTCAATCAACTTTTTACTCATTCTTGAACTGTCTTCTTATGTCGTACACTAGACAAATAATTGTCTAGCTGCCATGTTCACTGATGGCAATAGTAAAACTCTGCAGTTCATGGTTTCGTAAGGATCAATGAAAGCGAAATTTCAGGATTAGTGGAGTACATTATCACATTATCAATATCTCTTGCATATTGTTGATACATGTATTTTTTGCATTTCAGGAGGGTGACCATCTATCAAAGGAGACCATTGGTGAGCATGCACAAAAGGAGAAAAATGGGCCCAGGGTGCCAACCAGAAATCGAGGCCGTGGAAGGAGAAACAAGCGTGGCACAAATGGACATGGTAGATCTCCGGAAACTGCTTATTCTCTCCCTCTTGCTTCTCCTTATTCTCTTGAATTTAATGATATTTTTGTTTAAACATCACCAGGCCATGGAACTACTTCGTCCACTCATTTGGTTGAACCCTCAAAACCTCCTCCTGGTCCAAGAATGCCCGATGGAACCAGAGGATTTGCTATGGGAAGAGGCCGACCTCTTTCTTCATCTCCAAGCTAATGATGTCTTGTTAAGTGTGTTTTACTGCAAATATAATCTTATGTTTTGAGGATTGTGTTGCTATGTGAAAAATGCTTGGATGATGAATTTCAATGGTTGGTGCTTTGAAATGTACTCATGTGTTATAGAATTGTGGGTTCCTGGAGACAGCGGTATATAACATTGTACTATTGTGCCATT</genome_strand>
        <mrna_strand>AGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAA.............................................................................................TGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAG..............................................................................................................................................................................................................................................................................TTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTGAAAAAGCT..................................................................................GTGACCATTTTGAATGATGAACAGGATTGGAGATTTGGCTTGCGAGTCAAGCTTCTCAAGAAAATA...............................................................................................AACAAGCCTGGCCAAAGCAAGAAAGGTTGGAGAGATCCAGATTCTGATAGGAATAACAAGATCCAAGCATCTGATCCGGCAGTTAATGAGGAACACAATTCAAGTGAGCATCGTGTTGATTCACAAGACGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTGACCATCTATCAAAGGAGACCATTGGTGAGCATGCACAAAAGGAGAAAAATGGGCCCAGGGTGCCAACCAGAAATCGAGGCCGTGGAAGGAGAAACAAGCGTGGCACAAATGGACATG.......................................................................................GCCATGGAACTACTTCGTCCACTCATTTGGTTGAACCCTCAAAACCTCCTCCTGGTCCAAGAATGCCCGATGGAACCAGAGGATTTGCTATGGGAAGAGGCCGACCTCTTTCTTCATCTCCAAGCTAATGATGTCTTGTTAAGTGTGTTTTACTGCAAATATAATCTTATGTTTTGAGGATTGTGTTGCTATGTGAAAAATGCTTGGATGATGAATTTCAATGGTTGGTGCTTTNGAATGTACTCATGTGTTATAGAATTGTGGGTTCCTGGAGACAGCGGTATATAACATTGTACTATTGTGCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425964" ref_strand="+" ref_description="SGN-E425964 [STM-45-H16]">
      <seq>ctgtattggtggaaaatttacctgaggatcattcagtgaataaccttcggagcatatttggccaggctggaaatgtgaagcatattaccattcgtgatccacacactgaaagagatcccagaaaatgcacaactgcagagaagctgctcagtggtaagttgcatgctcttgtggaatataacacagtggaaactgctgaaagagctgtgaccattttgaatgatgaacaggattggagatttggcttgcgagtcaagcttctcaagaaaataaacaagcctggccaaagtaagaaaggttggagagatccagattctgataggaataacaatatccaagcatctgatctggcagttaatgaggaaaacaattcaagtgagcatcgtgttgattcacaagacgaagaggagggtgaccatctattgaaggagaccattggggagcatgcacaaaaggagaaaaatgggcccagggtgccaaccagaagtcgaggccgtggaaggagaaacaagcatggcacaaatggacatggccatggagctacttcttccactcatttggttgaaccatcaaaacctcctcctggtccaagaatgcctgatggaaccagaggatttgctatgggaagaggccgacctctttcttcatctcaagctaatgatgtttttgttaatatgtcttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="52810" stop="49245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52510" g_stop="52438" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52344" g_stop="52260" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="158" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52259" i_stop="51990" i_length="270">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51989" g_stop="51942" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="206" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51941" i_stop="51860" i_length="82">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51859" g_stop="51794" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="272" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51793" i_stop="51699" i_length="95">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51698" g_stop="51564" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="407" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51563" i_stop="49911" i_length="1653">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49910" g_stop="49787" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="531" r_length="124" r_score="0.960"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49786" i_stop="49700" i_length="87">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49699" g_stop="49545" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="685" r_length="154" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E425964" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52510" e_stop="52438"/>
          <exon e_start="52344" e_stop="52260"/>
          <exon e_start="51989" e_stop="51942"/>
          <exon e_start="51859" e_stop="51794"/>
          <exon e_start="51698" e_stop="51564"/>
          <exon e_start="49910" e_stop="49787"/>
          <exon e_start="49699" e_stop="49545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAGGTATGTAATTACAGCTCCTACATCAGAGCATCTGTAGACCTGACTAGTGTGAAGCATGGGATGGGTCTCAAAACTGTTTACTTACATTTAGAATTTTGGTTTTCCTAGTTGTTCATGAGAAGTATCATCACGTTTGGCATCTGACTGGCCATGCTGTTTAGTTTGCATCTAACCACATTGAAGAGCATATGAGAAATTTTGAAGTGGTTGGATTATATTATTTCTTCATGTATGCTTTGGTTATTTCTTCTTCGTTTTTTCTTATTATAGTTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTGAAAAAGCTGTGAGTGTTAATACAGGTTCCTATTCATTTTGGCTGTGTCATTTCATAAAATCTGTTGTTCATTTTGTTGGTGTCTTTTCAGGTGACCATTTTGAATGATGAACAGGATTGGAGATTTGGCTTGCGAGTCAAGCTTCTCAAGAAAATAGTAATTTGTTTTGTCTCCTTATCTTCCTTTCCTTAATCATCGAATAATATTGTCATTGGTGTATGCTTGTATAACATGTTATATTAACTCTTCAGAACAAGCCTGGCCAAAGCAAGAAAGGTTGGAGAGATCCAGATTCTGATAGGAATAACAATATCCAAGCATCTGATCCGGCAGTTAATGAGGAACACAATTCAAGTGAGCATCGTGTTGATTCACAAGACGAAGAGGTTAATCATTATTACTTTGCAATCTTTAGATTTATGTCTAAATATAGTTGTTTAGTATATTCGCTTTAGTGGCTAGAAAACAGAAGAGTAATGCCTACTTTATTATGGATATTTTCCAAGTTTTGATTAACATACCTTAAGAAATAGGGTGAAGTGGATAACAAAAGAAGAAAAAAGTTGATGAAAACTGATGGATGGAAGTCAGGAAGTTGTTGAAAGTTGATAAAATAATTAAAGAGCCATCTTGTATGCTGTTATGGCTGGAACAGAATTCAAAATTTCTTTCTCCCAAAGAGAAAATATTCTCAATCATTTTCCATACCTTCACATATGGCAACTGGCACATACAGAATCAACCTCATTTTAGACACACTTCCCATGAAACATAACTCCACCCTTGCTCTTCTCAAAGATTTTTCTTAGGGAGCTCACCGAGAAGCATATTTCAGTAACACTCTATCCCCCTCAATCATTATCACGCCTTGAAACCACAGAATCCCAAAATCATCTCCTCACTCCACCAGTGCACTCCCTTCTTCCTCCTTTTCTCACTATTCCCTCTTTCATCAATGTGGCAATTCATATTTCATCTCATCTACTCGTACATCACTCACATCCATTGTAGAAAATCCCACTAACACCTCTAACTCTTCTTGTTTTTTACACTTTTCATTCACAAAATACTTGACCAAAAGCTTAGTCTGTAAAATCCAAAAAAGAGCCCAGCTGGAAATGTCAACTGACATAACAAAAAGCTTTATCCTCTCCATTTTTTGGTTCAATCAACGTCTATGGTTCTTTTCCAATTCCTCATCAAAGCCTTATCAAGGTTTGAGAGAGGGAAAAGGGTTGGATTGAGTTGAAAATTTTAGGTCATGGCTTGGGAAGTTTTTCTTAAAAAAGAGAGGGAGGTAAAAAAAGATCATTAAAGATATCTGTATTTCAGGGCTCAGTTCCTTTATGCTGGAAAAGAGTGAGGGAAATAATAATGGGGAACAGAGGAAAGTGGGTCTAAATAACACTTGAAATGCTTTTATAAACCCCTAGTCTATCAAGTCACCACACTGGGTAGTGTGAGACGCATTTTGAGAAAGTACTGTGTCTGGGGAAATATTAGGTGCAAAGTTTTATATGTTATTGATAATTCGGATCAAGAGGGGAAGTTGTGTATTCTCCCAAAATATTTTCTTTCACACGAGACACATCTGCCAAATGGATTTAGGGTGTTTATTCTTTAAAAAAAGTATGAAAAGGTGAACAAAGAGATAAATGTTCAAACTTGTTTGATTAGGAAAGGAGTATTATAGTCATCGTTATGCAAGAAAGTTCAAACAGTACCTTGTTGTTTACTCCCTGTCTTTATAGTTCGTGGTATGGTTATCCACCAATCACTCGATTGTCAGTCCAGTTTCTTTTCGATTGTGCCAATTGTCAAGTCAATCAACTTTTTACTCATTCTTGAACTGTCTTCTTATGTCGTACACTAGACAAATAATTGTCTAGCTGCCATGTTCACTGATGGCAATAGTAAAACTCTGCAGTTCATGGTTTCGTAAGGATCAATGAAAGCGAAATTTCAGGATTAGTGGAGTACATTATCACATTATCAATATCTCTTGCATATTGTTGATACATGTATTTTTTGCATTTCAGGAGGGTGACCATCTATCAAAGGAGACCATTGGTGAGCATGCACAAAAGGAGAAAAATGGGCCCAGGGTGCCAACCAGAAATCGAGGCCGTGGAAGGAGAAACAAGCGTGGCACAAATGGACATGGTAGATCTCCGGAAACTGCTTATTCTCTCCCTCTTGCTTCTCCTTATTCTCTTGAATTTAATGATATTTTTGTTTAAACATCACCAGGCCATGGAACTACTTCGTCCACTCATTTGGTTGAACCCTCAAAACCTCCTCCTGGTCCAAGAATGCCCGATGGAACCAGAGGATTTGCTATGGGAAGAGGCCGACCTCTTTCTTCATCTCCAAGCTAATGATGTCTTGTTAAGTGTGTTTTACTG</genome_strand>
        <mrna_strand>CTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAATAACCTTCGGAGCATATTTGGCCAGGCTGGAAA.............................................................................................TGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAG..............................................................................................................................................................................................................................................................................TTGCATGCTCTTGTGGAATATAACACAGTGGAAACTGCTGAAAGAGCT..................................................................................GTGACCATTTTGAATGATGAACAGGATTGGAGATTTGGCTTGCGAGTCAAGCTTCTCAAGAAAATA...............................................................................................AACAAGCCTGGCCAAAGTAAGAAAGGTTGGAGAGATCCAGATTCTGATAGGAATAACAATATCCAAGCATCTGATCTGGCAGTTAATGAGGAAAACAATTCAAGTGAGCATCGTGTTGATTCACAAGACGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTGACCATCTATTGAAGGAGACCATTGGGGAGCATGCACAAAAGGAGAAAAATGGGCCCAGGGTGCCAACCAGAAGTCGAGGCCGTGGAAGGAGAAACAAGCATGGCACAAATGGACATG.......................................................................................GCCATGGAGCTACTTCTTCCACTCATTTGGTTGAACCATCAAAACCTCCTCCTGGTCCAAGAATGCCTGATGGAACCAGAGGATTTGCTATGGGAAGAGGCCGACCTCTTTCTTCATCT-CAAGCTAATGATGTTTTTGTTAATATGTCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702609" ref_strand="+" ref_description="SGN-E702609 [FA19AG11]">
      <seq>aaccctttctgcacttacggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgagattaaagatcccaaggtttgtactgtattggtggaaaatttacctgaggatcattcagtgaacaaccttcggagcatatttggccaggctggaaatgtgaagcatattaccattcgtgatccacacactgaaagagatcccagaaaatgcacaactgcagagaagctgctcagtggtaagttgcatgctctcgtggaatataacacagtggaagctgctgaaaaagctgtgaccattttgaatgatgaacaggattggagatttggcttgcgagtcaagcttctcaagaaaataaacaagcctggccaaagcaagaaaggttggagagatccatattctgataggaataacaatatccaagcatctgatccggcagttaatgaggaacacaattcaagtgagcatcgtgttgattcacaagacgaagaggagggtgaccatctatcaaaggagaccattggtgagcatgcacaaaaggagaaaaatgggcccagggtgccaaccagaaatcgaggccgtggaaggacaaacaagcgtggcacaaatggacatggccatggaactacttcgtccactcctttggttgaaccctcaaaacctcctcctggtccaaaaatgcccgatggaaccatagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="53127" stop="49317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52835" g_stop="52802" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.794"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="106" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52517" g_stop="52438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="186" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52344" g_stop="52260" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="271" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52259" i_stop="51990" i_length="270">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51989" g_stop="51942" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="319" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51941" i_stop="51860" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51859" g_stop="51794" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="385" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51793" i_stop="51699" i_length="95">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51698" g_stop="51564" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="520" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="51563" i_stop="49911" i_length="1653">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="49910" g_stop="49787" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="644" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="49786" i_stop="49700" i_length="87">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="49699" g_stop="49617" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="727" r_length="83" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E702609" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52835" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52438"/>
          <exon e_start="52344" e_stop="52260"/>
          <exon e_start="51989" e_stop="51942"/>
          <exon e_start="51859" e_stop="51794"/>
          <exon e_start="51698" e_stop="51564"/>
          <exon e_start="49910" e_stop="49787"/>
          <exon e_start="49699" e_stop="49617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAGGTATGTAATTACAGCTCCTACATCAGAGCATCTGTAGACCTGACTAGTGTGAAGCATGGGATGGGTCTCAAAACTGTTTACTTACATTTAGAATTTTGGTTTTCCTAGTTGTTCATGAGAAGTATCATCACGTTTGGCATCTGACTGGCCATGCTGTTTAGTTTGCATCTAACCACATTGAAGAGCATATGAGAAATTTTGAAGTGGTTGGATTATATTATTTCTTCATGTATGCTTTGGTTATTTCTTCTTCGTTTTTTCTTATTATAGTTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTGAAAAAGCTGTGAGTGTTAATACAGGTTCCTATTCATTTTGGCTGTGTCATTTCATAAAATCTGTTGTTCATTTTGTTGGTGTCTTTTCAGGTGACCATTTTGAATGATGAACAGGATTGGAGATTTGGCTTGCGAGTCAAGCTTCTCAAGAAAATAGTAATTTGTTTTGTCTCCTTATCTTCCTTTCCTTAATCATCGAATAATATTGTCATTGGTGTATGCTTGTATAACATGTTATATTAACTCTTCAGAACAAGCCTGGCCAAAGCAAGAAAGGTTGGAGAGATCCAGATTCTGATAGGAATAACAATATCCAAGCATCTGATCCGGCAGTTAATGAGGAACACAATTCAAGTGAGCATCGTGTTGATTCACAAGACGAAGAGGTTAATCATTATTACTTTGCAATCTTTAGATTTATGTCTAAATATAGTTGTTTAGTATATTCGCTTTAGTGGCTAGAAAACAGAAGAGTAATGCCTACTTTATTATGGATATTTTCCAAGTTTTGATTAACATACCTTAAGAAATAGGGTGAAGTGGATAACAAAAGAAGAAAAAAGTTGATGAAAACTGATGGATGGAAGTCAGGAAGTTGTTGAAAGTTGATAAAATAATTAAAGAGCCATCTTGTATGCTGTTATGGCTGGAACAGAATTCAAAATTTCTTTCTCCCAAAGAGAAAATATTCTCAATCATTTTCCATACCTTCACATATGGCAACTGGCACATACAGAATCAACCTCATTTTAGACACACTTCCCATGAAACATAACTCCACCCTTGCTCTTCTCAAAGATTTTTCTTAGGGAGCTCACCGAGAAGCATATTTCAGTAACACTCTATCCCCCTCAATCATTATCACGCCTTGAAACCACAGAATCCCAAAATCATCTCCTCACTCCACCAGTGCACTCCCTTCTTCCTCCTTTTCTCACTATTCCCTCTTTCATCAATGTGGCAATTCATATTTCATCTCATCTACTCGTACATCACTCACATCCATTGTAGAAAATCCCACTAACACCTCTAACTCTTCTTGTTTTTTACACTTTTCATTCACAAAATACTTGACCAAAAGCTTAGTCTGTAAAATCCAAAAAAGAGCCCAGCTGGAAATGTCAACTGACATAACAAAAAGCTTTATCCTCTCCATTTTTTGGTTCAATCAACGTCTATGGTTCTTTTCCAATTCCTCATCAAAGCCTTATCAAGGTTTGAGAGAGGGAAAAGGGTTGGATTGAGTTGAAAATTTTAGGTCATGGCTTGGGAAGTTTTTCTTAAAAAAGAGAGGGAGGTAAAAAAAGATCATTAAAGATATCTGTATTTCAGGGCTCAGTTCCTTTATGCTGGAAAAGAGTGAGGGAAATAATAATGGGGAACAGAGGAAAGTGGGTCTAAATAACACTTGAAATGCTTTTATAAACCCCTAGTCTATCAAGTCACCACACTGGGTAGTGTGAGACGCATTTTGAGAAAGTACTGTGTCTGGGGAAATATTAGGTGCAAAGTTTTATATGTTATTGATAATTCGGATCAAGAGGGGAAGTTGTGTATTCTCCCAAAATATTTTCTTTCACACGAGACACATCTGCCAAATGGATTTAGGGTGTTTATTCTTTAAAAAAAGTATGAAAAGGTGAACAAAGAGATAAATGTTCAAACTTGTTTGATTAGGAAAGGAGTATTATAGTCATCGTTATGCAAGAAAGTTCAAACAGTACCTTGTTGTTTACTCCCTGTCTTTATAGTTCGTGGTATGGTTATCCACCAATCACTCGATTGTCAGTCCAGTTTCTTTTCGATTGTGCCAATTGTCAAGTCAATCAACTTTTTACTCATTCTTGAACTGTCTTCTTATGTCGTACACTAGACAAATAATTGTCTAGCTGCCATGTTCACTGATGGCAATAGTAAAACTCTGCAGTTCATGGTTTCGTAAGGATCAATGAAAGCGAAATTTCAGGATTAGTGGAGTACATTATCACATTATCAATATCTCTTGCATATTGTTGATACATGTATTTTTTGCATTTCAGGAGGGTGACCATCTATCAAAGGAGACCATTGGTGAGCATGCACAAAAGGAGAAAAATGGGCCCAGGGTGCCAACCAGAAATCGAGGCCGTGGAAGGAGAAACAAGCGTGGCACAAATGGACATGGTAGATCTCCGGAAACTGCTTATTCTCTCCCTCTTGCTTCTCCTTATTCTCTTGAATTTAATGATATTTTTGTTTAAACATCACCAGGCCATGGAACTACTTCGTCCACTCATTTGGTTGAACCCTCAAAACCTCCTCCTGGTCCAAGAATGCCCGATGGAACCAGAGGA</genome_strand>
        <mrna_strand>AACCCTTTCTGCACTTACGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAA.............................................................................................TGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAG..............................................................................................................................................................................................................................................................................TTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTGAAAAAGCT..................................................................................GTGACCATTTTGAATGATGAACAGGATTGGAGATTTGGCTTGCGAGTCAAGCTTCTCAAGAAAATA...............................................................................................AACAAGCCTGGCCAAAGCAAGAAAGGTTGGAGAGATCCATATTCTGATAGGAATAACAATATCCAAGCATCTGATCCGGCAGTTAATGAGGAACACAATTCAAGTGAGCATCGTGTTGATTCACAAGACGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTGACCATCTATCAAAGGAGACCATTGGTGAGCATGCACAAAAGGAGAAAAATGGGCCCAGGGTGCCAACCAGAAATCGAGGCCGTGGAAGGACAAACAAGCGTGGCACAAATGGACATG.......................................................................................GCCATGGAACTACTTCGTCCACTCCTTTGGTTGAACCCTCAAAACCTCCTCCTGGTCCAAAAATGCCCGATGGAACCATAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265976" ref_strand="+" ref_description="SGN-E265976 [cLEI-6-F15]">
      <seq>tgaaagagatcccagaaaatgcacaactgcagagaagctgctcagtggtaagttgcatgctctcgtggaatataacacagtggaagctgctgaaaaagctgtgaccattttgaatgatgaacaggattggagatttggcttgcgagtcaagcttctcaagaaaataaacaagcctggccaaagcaagaaaggttggagagatccagattctgataggaataacaatatccaagcatctgatccggcagttaatgaggaacacaattcaagtgagcatcgtgttgattcacaagacgaagaggagggtgaccatctatcaaaggagaccattggtgagcatgcacaaaaggagaaaaatgggcccagggtgccaaccagaaatcgaggccgtggaaggagaaacaagcgtggcacaaatggacatggccatggaactacttcgtccactcatttggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="52611" stop="49368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52311" g_stop="52260" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52259" i_stop="51990" i_length="270">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51989" g_stop="51942" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="100" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51941" i_stop="51860" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51859" g_stop="51794" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="166" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51793" i_stop="51699" i_length="95">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51698" g_stop="51564" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="301" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51563" i_stop="49911" i_length="1653">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49910" g_stop="49787" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="425" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49786" i_stop="49700" i_length="87">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49699" g_stop="49668" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="457" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E265976" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52311" e_stop="52260"/>
          <exon e_start="51989" e_stop="51942"/>
          <exon e_start="51859" e_stop="51794"/>
          <exon e_start="51698" e_stop="51564"/>
          <exon e_start="49910" e_stop="49787"/>
          <exon e_start="49699" e_stop="49668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAGGTATGTAATTACAGCTCCTACATCAGAGCATCTGTAGACCTGACTAGTGTGAAGCATGGGATGGGTCTCAAAACTGTTTACTTACATTTAGAATTTTGGTTTTCCTAGTTGTTCATGAGAAGTATCATCACGTTTGGCATCTGACTGGCCATGCTGTTTAGTTTGCATCTAACCACATTGAAGAGCATATGAGAAATTTTGAAGTGGTTGGATTATATTATTTCTTCATGTATGCTTTGGTTATTTCTTCTTCGTTTTTTCTTATTATAGTTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTGAAAAAGCTGTGAGTGTTAATACAGGTTCCTATTCATTTTGGCTGTGTCATTTCATAAAATCTGTTGTTCATTTTGTTGGTGTCTTTTCAGGTGACCATTTTGAATGATGAACAGGATTGGAGATTTGGCTTGCGAGTCAAGCTTCTCAAGAAAATAGTAATTTGTTTTGTCTCCTTATCTTCCTTTCCTTAATCATCGAATAATATTGTCATTGGTGTATGCTTGTATAACATGTTATATTAACTCTTCAGAACAAGCCTGGCCAAAGCAAGAAAGGTTGGAGAGATCCAGATTCTGATAGGAATAACAATATCCAAGCATCTGATCCGGCAGTTAATGAGGAACACAATTCAAGTGAGCATCGTGTTGATTCACAAGACGAAGAGGTTAATCATTATTACTTTGCAATCTTTAGATTTATGTCTAAATATAGTTGTTTAGTATATTCGCTTTAGTGGCTAGAAAACAGAAGAGTAATGCCTACTTTATTATGGATATTTTCCAAGTTTTGATTAACATACCTTAAGAAATAGGGTGAAGTGGATAACAAAAGAAGAAAAAAGTTGATGAAAACTGATGGATGGAAGTCAGGAAGTTGTTGAAAGTTGATAAAATAATTAAAGAGCCATCTTGTATGCTGTTATGGCTGGAACAGAATTCAAAATTTCTTTCTCCCAAAGAGAAAATATTCTCAATCATTTTCCATACCTTCACATATGGCAACTGGCACATACAGAATCAACCTCATTTTAGACACACTTCCCATGAAACATAACTCCACCCTTGCTCTTCTCAAAGATTTTTCTTAGGGAGCTCACCGAGAAGCATATTTCAGTAACACTCTATCCCCCTCAATCATTATCACGCCTTGAAACCACAGAATCCCAAAATCATCTCCTCACTCCACCAGTGCACTCCCTTCTTCCTCCTTTTCTCACTATTCCCTCTTTCATCAATGTGGCAATTCATATTTCATCTCATCTACTCGTACATCACTCACATCCATTGTAGAAAATCCCACTAACACCTCTAACTCTTCTTGTTTTTTACACTTTTCATTCACAAAATACTTGACCAAAAGCTTAGTCTGTAAAATCCAAAAAAGAGCCCAGCTGGAAATGTCAACTGACATAACAAAAAGCTTTATCCTCTCCATTTTTTGGTTCAATCAACGTCTATGGTTCTTTTCCAATTCCTCATCAAAGCCTTATCAAGGTTTGAGAGAGGGAAAAGGGTTGGATTGAGTTGAAAATTTTAGGTCATGGCTTGGGAAGTTTTTCTTAAAAAAGAGAGGGAGGTAAAAAAAGATCATTAAAGATATCTGTATTTCAGGGCTCAGTTCCTTTATGCTGGAAAAGAGTGAGGGAAATAATAATGGGGAACAGAGGAAAGTGGGTCTAAATAACACTTGAAATGCTTTTATAAACCCCTAGTCTATCAAGTCACCACACTGGGTAGTGTGAGACGCATTTTGAGAAAGTACTGTGTCTGGGGAAATATTAGGTGCAAAGTTTTATATGTTATTGATAATTCGGATCAAGAGGGGAAGTTGTGTATTCTCCCAAAATATTTTCTTTCACACGAGACACATCTGCCAAATGGATTTAGGGTGTTTATTCTTTAAAAAAAGTATGAAAAGGTGAACAAAGAGATAAATGTTCAAACTTGTTTGATTAGGAAAGGAGTATTATAGTCATCGTTATGCAAGAAAGTTCAAACAGTACCTTGTTGTTTACTCCCTGTCTTTATAGTTCGTGGTATGGTTATCCACCAATCACTCGATTGTCAGTCCAGTTTCTTTTCGATTGTGCCAATTGTCAAGTCAATCAACTTTTTACTCATTCTTGAACTGTCTTCTTATGTCGTACACTAGACAAATAATTGTCTAGCTGCCATGTTCACTGATGGCAATAGTAAAACTCTGCAGTTCATGGTTTCGTAAGGATCAATGAAAGCGAAATTTCAGGATTAGTGGAGTACATTATCACATTATCAATATCTCTTGCATATTGTTGATACATGTATTTTTTGCATTTCAGGAGGGTGACCATCTATCAAAGGAGACCATTGGTGAGCATGCACAAAAGGAGAAAAATGGGCCCAGGGTGCCAACCAGAAATCGAGGCCGTGGAAGGAGAAACAAGCGTGGCACAAATGGACATGGTAGATCTCCGGAAACTGCTTATTCTCTCCCTCTTGCTTCTCCTTATTCTCTTGAATTTAATGATATTTTTGTTTAAACATCACCAGGCCATGGAACTACTTCGTCCACTCATTTGGTT</genome_strand>
        <mrna_strand>TGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAG..............................................................................................................................................................................................................................................................................TTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTGAAAAAGCT..................................................................................GTGACCATTTTGAATGATGAACAGGATTGGAGATTTGGCTTGCGAGTCAAGCTTCTCAAGAAAATA...............................................................................................AACAAGCCTGGCCAAAGCAAGAAAGGTTGGAGAGATCCAGATTCTGATAGGAATAACAATATCCAAGCATCTGATCCGGCAGTTAATGAGGAACACAATTCAAGTGAGCATCGTGTTGATTCACAAGACGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTGACCATCTATCAAAGGAGACCATTGGTGAGCATGCACAAAAGGAGAAAAATGGGCCCAGGGTGCCAACCAGAAATCGAGGCCGTGGAAGGAGAAACAAGCGTGGCACAAATGGACATG.......................................................................................GCCATGGAACTACTTCGTCCACTCATTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304801" ref_strand="+" ref_description="SGN-E304801 [cLEX-10-K14]">
      <seq>accattcgtgatccacacactgaaagagatcccagaaaatgcacaactgcagagaagctgctcagtggtaagttgcatgctctcgtggaatataacacagtggaagctgctgaaaaagctgtgaccattttgaatgatgaacaggattggagatttggcttgcgagtcaagcttctcaagaaaataaacaagcctggccaaagcaagaaaggttggagagatccagattctgataggaataacaatatccaagcatctgatccggcagttaatgaggaacacaattcaagtgagcatcgtgttgattcacaagacgaagaggagggtgaccatctatcaaaggagaccattggtgagcatgcacaaaaggagaaaaatgggcccagggtgccaaccagaaatcgaggccgtggaaggagaaacaagcgtggcacaaatggacatggccatggaactacttcgtccactcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="52631" stop="49371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52331" g_stop="52260" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52259" i_stop="51990" i_length="270">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51989" g_stop="51942" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="120" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51941" i_stop="51860" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51859" g_stop="51794" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="186" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51793" i_stop="51699" i_length="95">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51698" g_stop="51564" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="321" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51563" i_stop="49911" i_length="1653">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49910" g_stop="49787" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="445" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49786" i_stop="49700" i_length="87">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49699" g_stop="49671" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="474" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E304801" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52331" e_stop="52260"/>
          <exon e_start="51989" e_stop="51942"/>
          <exon e_start="51859" e_stop="51794"/>
          <exon e_start="51698" e_stop="51564"/>
          <exon e_start="49910" e_stop="49787"/>
          <exon e_start="49699" e_stop="49671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAGGTATGTAATTACAGCTCCTACATCAGAGCATCTGTAGACCTGACTAGTGTGAAGCATGGGATGGGTCTCAAAACTGTTTACTTACATTTAGAATTTTGGTTTTCCTAGTTGTTCATGAGAAGTATCATCACGTTTGGCATCTGACTGGCCATGCTGTTTAGTTTGCATCTAACCACATTGAAGAGCATATGAGAAATTTTGAAGTGGTTGGATTATATTATTTCTTCATGTATGCTTTGGTTATTTCTTCTTCGTTTTTTCTTATTATAGTTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTGAAAAAGCTGTGAGTGTTAATACAGGTTCCTATTCATTTTGGCTGTGTCATTTCATAAAATCTGTTGTTCATTTTGTTGGTGTCTTTTCAGGTGACCATTTTGAATGATGAACAGGATTGGAGATTTGGCTTGCGAGTCAAGCTTCTCAAGAAAATAGTAATTTGTTTTGTCTCCTTATCTTCCTTTCCTTAATCATCGAATAATATTGTCATTGGTGTATGCTTGTATAACATGTTATATTAACTCTTCAGAACAAGCCTGGCCAAAGCAAGAAAGGTTGGAGAGATCCAGATTCTGATAGGAATAACAATATCCAAGCATCTGATCCGGCAGTTAATGAGGAACACAATTCAAGTGAGCATCGTGTTGATTCACAAGACGAAGAGGTTAATCATTATTACTTTGCAATCTTTAGATTTATGTCTAAATATAGTTGTTTAGTATATTCGCTTTAGTGGCTAGAAAACAGAAGAGTAATGCCTACTTTATTATGGATATTTTCCAAGTTTTGATTAACATACCTTAAGAAATAGGGTGAAGTGGATAACAAAAGAAGAAAAAAGTTGATGAAAACTGATGGATGGAAGTCAGGAAGTTGTTGAAAGTTGATAAAATAATTAAAGAGCCATCTTGTATGCTGTTATGGCTGGAACAGAATTCAAAATTTCTTTCTCCCAAAGAGAAAATATTCTCAATCATTTTCCATACCTTCACATATGGCAACTGGCACATACAGAATCAACCTCATTTTAGACACACTTCCCATGAAACATAACTCCACCCTTGCTCTTCTCAAAGATTTTTCTTAGGGAGCTCACCGAGAAGCATATTTCAGTAACACTCTATCCCCCTCAATCATTATCACGCCTTGAAACCACAGAATCCCAAAATCATCTCCTCACTCCACCAGTGCACTCCCTTCTTCCTCCTTTTCTCACTATTCCCTCTTTCATCAATGTGGCAATTCATATTTCATCTCATCTACTCGTACATCACTCACATCCATTGTAGAAAATCCCACTAACACCTCTAACTCTTCTTGTTTTTTACACTTTTCATTCACAAAATACTTGACCAAAAGCTTAGTCTGTAAAATCCAAAAAAGAGCCCAGCTGGAAATGTCAACTGACATAACAAAAAGCTTTATCCTCTCCATTTTTTGGTTCAATCAACGTCTATGGTTCTTTTCCAATTCCTCATCAAAGCCTTATCAAGGTTTGAGAGAGGGAAAAGGGTTGGATTGAGTTGAAAATTTTAGGTCATGGCTTGGGAAGTTTTTCTTAAAAAAGAGAGGGAGGTAAAAAAAGATCATTAAAGATATCTGTATTTCAGGGCTCAGTTCCTTTATGCTGGAAAAGAGTGAGGGAAATAATAATGGGGAACAGAGGAAAGTGGGTCTAAATAACACTTGAAATGCTTTTATAAACCCCTAGTCTATCAAGTCACCACACTGGGTAGTGTGAGACGCATTTTGAGAAAGTACTGTGTCTGGGGAAATATTAGGTGCAAAGTTTTATATGTTATTGATAATTCGGATCAAGAGGGGAAGTTGTGTATTCTCCCAAAATATTTTCTTTCACACGAGACACATCTGCCAAATGGATTTAGGGTGTTTATTCTTTAAAAAAAGTATGAAAAGGTGAACAAAGAGATAAATGTTCAAACTTGTTTGATTAGGAAAGGAGTATTATAGTCATCGTTATGCAAGAAAGTTCAAACAGTACCTTGTTGTTTACTCCCTGTCTTTATAGTTCGTGGTATGGTTATCCACCAATCACTCGATTGTCAGTCCAGTTTCTTTTCGATTGTGCCAATTGTCAAGTCAATCAACTTTTTACTCATTCTTGAACTGTCTTCTTATGTCGTACACTAGACAAATAATTGTCTAGCTGCCATGTTCACTGATGGCAATAGTAAAACTCTGCAGTTCATGGTTTCGTAAGGATCAATGAAAGCGAAATTTCAGGATTAGTGGAGTACATTATCACATTATCAATATCTCTTGCATATTGTTGATACATGTATTTTTTGCATTTCAGGAGGGTGACCATCTATCAAAGGAGACCATTGGTGAGCATGCACAAAAGGAGAAAAATGGGCCCAGGGTGCCAACCAGAAATCGAGGCCGTGGAAGGAGAAACAAGCGTGGCACAAATGGACATGGTAGATCTCCGGAAACTGCTTATTCTCTCCCTCTTGCTTCTCCTTATTCTCTTGAATTTAATGATATTTTTGTTTAAACATCACCAGGCCATGGAACTACTTCGTCCACTCATTTG</genome_strand>
        <mrna_strand>ACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAG..............................................................................................................................................................................................................................................................................TTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTGAAAAAGCT..................................................................................GTGACCATTTTGAATGATGAACAGGATTGGAGATTTGGCTTGCGAGTCAAGCTTCTCAAGAAAATA...............................................................................................AACAAGCCTGGCCAAAGCAAGAAAGGTTGGAGAGATCCAGATTCTGATAGGAATAACAATATCCAAGCATCTGATCCGGCAGTTAATGAGGAACACAATTCAAGTGAGCATCGTGTTGATTCACAAGACGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTGACCATCTATCAAAGGAGACCATTGGTGAGCATGCACAAAAGGAGAAAAATGGGCCCAGGGTGCCAACCAGAAATCGAGGCCGTGGAAGGAGAAACAAGCGTGGCACAAATGGACATG.......................................................................................GCCATGGAACTACTTCGTCCACTCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362619" ref_strand="+" ref_description="SGN-E362619 [cLPP-1-D4]">
      <seq>gtgaagcgacttcatcctcttccattaagtgagattaaagatcctaaggtttgtactgtattggtggaaaatttacctgaggatcattcagtgaacaaccttcggagcatatttggccaggctggaaatgtgaagcatattaccattcgtgatccacacactgaaagagatcccagaaaatgcacaactgcagagaagctgctcagtggtaagttgcatgctctcgtggaatataacacagtggaagctgctgaaaaagctgtgaccattttgaatgatgaacaggattggagatttggcttgcgagtcaagcttctcaagaaaataaacaagcctggccaaagcaagaaaggttggagagatccagattctgataggaataacaatatccaagcatctgatccggcagttaatgaggaaaacatttcaagtgagcatcgtgttgattcacaagacgaagaggagggtgaccatctatcaaaggagaccattggggagcacgctcagaaggagaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="52949" stop="49554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52649" g_stop="52602" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52517" g_stop="52438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="128" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52344" g_stop="52260" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="213" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52259" i_stop="51990" i_length="270">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51989" g_stop="51942" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="261" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51941" i_stop="51860" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51859" g_stop="51794" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="327" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51793" i_stop="51699" i_length="95">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51698" g_stop="51564" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="462" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51563" i_stop="49911" i_length="1653">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49910" g_stop="49854" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="519" r_length="57" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E362619" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52649" e_stop="52602"/>
          <exon e_start="52517" e_stop="52438"/>
          <exon e_start="52344" e_stop="52260"/>
          <exon e_start="51989" e_stop="51942"/>
          <exon e_start="51859" e_stop="51794"/>
          <exon e_start="51698" e_stop="51564"/>
          <exon e_start="49910" e_stop="49854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAGGTATGTAATTACAGCTCCTACATCAGAGCATCTGTAGACCTGACTAGTGTGAAGCATGGGATGGGTCTCAAAACTGTTTACTTACATTTAGAATTTTGGTTTTCCTAGTTGTTCATGAGAAGTATCATCACGTTTGGCATCTGACTGGCCATGCTGTTTAGTTTGCATCTAACCACATTGAAGAGCATATGAGAAATTTTGAAGTGGTTGGATTATATTATTTCTTCATGTATGCTTTGGTTATTTCTTCTTCGTTTTTTCTTATTATAGTTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTGAAAAAGCTGTGAGTGTTAATACAGGTTCCTATTCATTTTGGCTGTGTCATTTCATAAAATCTGTTGTTCATTTTGTTGGTGTCTTTTCAGGTGACCATTTTGAATGATGAACAGGATTGGAGATTTGGCTTGCGAGTCAAGCTTCTCAAGAAAATAGTAATTTGTTTTGTCTCCTTATCTTCCTTTCCTTAATCATCGAATAATATTGTCATTGGTGTATGCTTGTATAACATGTTATATTAACTCTTCAGAACAAGCCTGGCCAAAGCAAGAAAGGTTGGAGAGATCCAGATTCTGATAGGAATAACAATATCCAAGCATCTGATCCGGCAGTTAATGAGGAACACAATTCAAGTGAGCATCGTGTTGATTCACAAGACGAAGAGGTTAATCATTATTACTTTGCAATCTTTAGATTTATGTCTAAATATAGTTGTTTAGTATATTCGCTTTAGTGGCTAGAAAACAGAAGAGTAATGCCTACTTTATTATGGATATTTTCCAAGTTTTGATTAACATACCTTAAGAAATAGGGTGAAGTGGATAACAAAAGAAGAAAAAAGTTGATGAAAACTGATGGATGGAAGTCAGGAAGTTGTTGAAAGTTGATAAAATAATTAAAGAGCCATCTTGTATGCTGTTATGGCTGGAACAGAATTCAAAATTTCTTTCTCCCAAAGAGAAAATATTCTCAATCATTTTCCATACCTTCACATATGGCAACTGGCACATACAGAATCAACCTCATTTTAGACACACTTCCCATGAAACATAACTCCACCCTTGCTCTTCTCAAAGATTTTTCTTAGGGAGCTCACCGAGAAGCATATTTCAGTAACACTCTATCCCCCTCAATCATTATCACGCCTTGAAACCACAGAATCCCAAAATCATCTCCTCACTCCACCAGTGCACTCCCTTCTTCCTCCTTTTCTCACTATTCCCTCTTTCATCAATGTGGCAATTCATATTTCATCTCATCTACTCGTACATCACTCACATCCATTGTAGAAAATCCCACTAACACCTCTAACTCTTCTTGTTTTTTACACTTTTCATTCACAAAATACTTGACCAAAAGCTTAGTCTGTAAAATCCAAAAAAGAGCCCAGCTGGAAATGTCAACTGACATAACAAAAAGCTTTATCCTCTCCATTTTTTGGTTCAATCAACGTCTATGGTTCTTTTCCAATTCCTCATCAAAGCCTTATCAAGGTTTGAGAGAGGGAAAAGGGTTGGATTGAGTTGAAAATTTTAGGTCATGGCTTGGGAAGTTTTTCTTAAAAAAGAGAGGGAGGTAAAAAAAGATCATTAAAGATATCTGTATTTCAGGGCTCAGTTCCTTTATGCTGGAAAAGAGTGAGGGAAATAATAATGGGGAACAGAGGAAAGTGGGTCTAAATAACACTTGAAATGCTTTTATAAACCCCTAGTCTATCAAGTCACCACACTGGGTAGTGTGAGACGCATTTTGAGAAAGTACTGTGTCTGGGGAAATATTAGGTGCAAAGTTTTATATGTTATTGATAATTCGGATCAAGAGGGGAAGTTGTGTATTCTCCCAAAATATTTTCTTTCACACGAGACACATCTGCCAAATGGATTTAGGGTGTTTATTCTTTAAAAAAAGTATGAAAAGGTGAACAAAGAGATAAATGTTCAAACTTGTTTGATTAGGAAAGGAGTATTATAGTCATCGTTATGCAAGAAAGTTCAAACAGTACCTTGTTGTTTACTCCCTGTCTTTATAGTTCGTGGTATGGTTATCCACCAATCACTCGATTGTCAGTCCAGTTTCTTTTCGATTGTGCCAATTGTCAAGTCAATCAACTTTTTACTCATTCTTGAACTGTCTTCTTATGTCGTACACTAGACAAATAATTGTCTAGCTGCCATGTTCACTGATGGCAATAGTAAAACTCTGCAGTTCATGGTTTCGTAAGGATCAATGAAAGCGAAATTTCAGGATTAGTGGAGTACATTATCACATTATCAATATCTCTTGCATATTGTTGATACATGTATTTTTTGCATTTCAGGAGGGTGACCATCTATCAAAGGAGACCATTGGTGAGCATGCACAAAAGGAGAAAAAT</genome_strand>
        <mrna_strand>GTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCTAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAA.............................................................................................TGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAG..............................................................................................................................................................................................................................................................................TTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTGAAAAAGCT..................................................................................GTGACCATTTTGAATGATGAACAGGATTGGAGATTTGGCTTGCGAGTCAAGCTTCTCAAGAAAATA...............................................................................................AACAAGCCTGGCCAAAGCAAGAAAGGTTGGAGAGATCCAGATTCTGATAGGAATAACAATATCCAAGCATCTGATCCGGCAGTTAATGAGGAAAACATTTCAAGTGAGCATCGTGTTGATTCACAAGACGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTGACCATCTATCAAAGGAGACCATTGGGGAGCACGCTCAGAAGGAGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361641" ref_strand="+" ref_description="SGN-E361641 [cLPP-12-C2]">
      <seq>aacaaccttcggagcatatttggccaggctggaaatgtgaagcatattaccattcgtgatccacacactgaaagagatcccagaaaatgcacaactgcagagaagctgctcagtggtaagttgcatgctctcgtggaatataacacagtggaagctgctgaaaaagctgtgaccattttgaatgatgaacaggattggagatttggcttgcgagtcaagcttctcaagaaaataaacaagcctggccaaagcaagaaaggttggagagatccagattctgataggaataacaatatccaagcatctgatccggcagttaatgaggaaaacatttcaagtgagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="52772" stop="51289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52472" g_stop="52438" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52344" g_stop="52260" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="120" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52259" i_stop="51990" i_length="270">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51989" g_stop="51942" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="168" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51941" i_stop="51860" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51859" g_stop="51794" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="234" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51793" i_stop="51699" i_length="95">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51698" g_stop="51589" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="344" r_length="110" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E361641" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52472" e_stop="52438"/>
          <exon e_start="52344" e_stop="52260"/>
          <exon e_start="51989" e_stop="51942"/>
          <exon e_start="51859" e_stop="51794"/>
          <exon e_start="51698" e_stop="51589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAGGTATGTAATTACAGCTCCTACATCAGAGCATCTGTAGACCTGACTAGTGTGAAGCATGGGATGGGTCTCAAAACTGTTTACTTACATTTAGAATTTTGGTTTTCCTAGTTGTTCATGAGAAGTATCATCACGTTTGGCATCTGACTGGCCATGCTGTTTAGTTTGCATCTAACCACATTGAAGAGCATATGAGAAATTTTGAAGTGGTTGGATTATATTATTTCTTCATGTATGCTTTGGTTATTTCTTCTTCGTTTTTTCTTATTATAGTTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTGAAAAAGCTGTGAGTGTTAATACAGGTTCCTATTCATTTTGGCTGTGTCATTTCATAAAATCTGTTGTTCATTTTGTTGGTGTCTTTTCAGGTGACCATTTTGAATGATGAACAGGATTGGAGATTTGGCTTGCGAGTCAAGCTTCTCAAGAAAATAGTAATTTGTTTTGTCTCCTTATCTTCCTTTCCTTAATCATCGAATAATATTGTCATTGGTGTATGCTTGTATAACATGTTATATTAACTCTTCAGAACAAGCCTGGCCAAAGCAAGAAAGGTTGGAGAGATCCAGATTCTGATAGGAATAACAATATCCAAGCATCTGATCCGGCAGTTAATGAGGAACACAATTCAAGTGAGCA</genome_strand>
        <mrna_strand>AACAACCTTCGGAGCATATTTGGCCAGGCTGGAAA.............................................................................................TGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAG..............................................................................................................................................................................................................................................................................TTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTGAAAAAGCT..................................................................................GTGACCATTTTGAATGATGAACAGGATTGGAGATTTGGCTTGCGAGTCAAGCTTCTCAAGAAAATA...............................................................................................AACAAGCCTGGCCAAAGCAAGAAAGGTTGGAGAGATCCAGATTCTGATAGGAATAACAATATCCAAGCATCTGATCCGGCAGTTAATGAGGAAAACATTTCAAGTGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262823" ref_strand="+" ref_description="SGN-E262823 [cLEG-59-E9]">
      <seq>aaaaatggaagcagacggtggaggagtactccctataccttctcagaccgcttcatttcctcctcatgatgatgatgatcatccagatttttcacctgttggatcgccggagtctcactttattaacgatctttctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgaccagagacaaggaaggatttgtccctgtgaaagtaattgcctctttcagaaaagtgaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgagattaaagatcccaaggtttgtactgtattggtggaaaatttacctgaggatcattcagtgaacaaccttcggagcatatttggccaggctggaaatgtgaagcatattaccattcgtgatccacacactgaaagagatcccagaaaatgcacaactgcagagaagctgctcagtggattggagatttggcttgcgagtcaagcttctcaagaaaataaacaagcctggccaaagcaagaaaggttgtagagatccagattctgataggaataacaatatccaagcatctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54794" stop="51323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54494" g_stop="54281" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="296" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="391" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="463" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="543" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52344" g_stop="52265" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="623" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52264" i_stop="51836" i_length="429">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51835" g_stop="51794" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="665" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="51793" i_stop="51699" i_length="95">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="51698" g_stop="51623" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="741" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E262823" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54494" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52438"/>
          <exon e_start="52344" e_stop="52265"/>
          <exon e_start="51835" e_stop="51794"/>
          <exon e_start="51698" e_stop="51623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAGGTATGTAATTACAGCTCCTACATCAGAGCATCTGTAGACCTGACTAGTGTGAAGCATGGGATGGGTCTCAAAACTGTTTACTTACATTTAGAATTTTGGTTTTCCTAGTTGTTCATGAGAAGTATCATCACGTTTGGCATCTGACTGGCCATGCTGTTTAGTTTGCATCTAACCACATTGAAGAGCATATGAGAAATTTTGAAGTGGTTGGATTATATTATTTCTTCATGTATGCTTTGGTTATTTCTTCTTCGTTTTTTCTTATTATAGTTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTGAAAAAGCTGTGAGTGTTAATACAGGTTCCTATTCATTTTGGCTGTGTCATTTCATAAAATCTGTTGTTCATTTTGTTGGTGTCTTTTCAGGTGACCATTTTGAATGATGAACAGGATTGGAGATTTGGCTTGCGAGTCAAGCTTCTCAAGAAAATAGTAATTTGTTTTGTCTCCTTATCTTCCTTTCCTTAATCATCGAATAATATTGTCATTGGTGTATGCTTGTATAACATGTTATATTAACTCTTCAGAACAAGCCTGGCCAAAGCAAGAAAGGTTGGAGAGATCCAGATTCTGATAGGAATAACAATATCCAAGCATCTGATC</genome_strand>
        <mrna_strand>AAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCTCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCTTTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAA.............................................................................................TGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAGATTTGGCTTGCGAGTCAAGCTTCTCAAGAAAATA...............................................................................................AACAAGCCTGGCCAAAGCAAGAAAGGTTGTAGAGATCCAGATTCTGATAGGAATAACAATATCCAAGCATCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269321" ref_strand="+" ref_description="SGN-E269321 [cLEM-18-N1]">
      <seq>tcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgaccagagacaaggaaggatttgtccctgtgaaagtaattgcctctttcagaaaagtgaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgagattaaagatcccaaggtttgtactgtattggtggaaaatttacctgaggatcattcagtgaacaaccttcggagcatatttggccaggctggaaatgtgaagcatattaccattcgtgatccacacactgaaagagatcccagaaaatgcacaactgcagagaagctgctcagtggtaagttgcatgctctcgtggaatataacacagtggaagctgctgaaaaagctgtgaccattttgaatgatgaacaggattggagatttggcttgcgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54615" stop="51512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54315" g_stop="54281" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="117" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="212" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="284" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="364" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52344" g_stop="52260" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="449" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52259" i_stop="51990" i_length="270">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51989" g_stop="51942" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="497" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="51941" i_stop="51860" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="51859" g_stop="51812" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="545" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E269321" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54315" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52438"/>
          <exon e_start="52344" e_stop="52260"/>
          <exon e_start="51989" e_stop="51942"/>
          <exon e_start="51859" e_stop="51812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAGGTATGTAATTACAGCTCCTACATCAGAGCATCTGTAGACCTGACTAGTGTGAAGCATGGGATGGGTCTCAAAACTGTTTACTTACATTTAGAATTTTGGTTTTCCTAGTTGTTCATGAGAAGTATCATCACGTTTGGCATCTGACTGGCCATGCTGTTTAGTTTGCATCTAACCACATTGAAGAGCATATGAGAAATTTTGAAGTGGTTGGATTATATTATTTCTTCATGTATGCTTTGGTTATTTCTTCTTCGTTTTTTCTTATTATAGTTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTGAAAAAGCTGTGAGTGTTAATACAGGTTCCTATTCATTTTGGCTGTGTCATTTCATAAAATCTGTTGTTCATTTTGTTGGTGTCTTTTCAGGTGACCATTTTGAATGATGAACAGGATTGGAGATTTGGCTTGCGAGTC</genome_strand>
        <mrna_strand>TCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAA.............................................................................................TGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAG..............................................................................................................................................................................................................................................................................TTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTGAAAAAGCT..................................................................................GTGACCATTTTGAATGATGAACAGGATTGGAGATTTGGCTTGCGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705597" ref_strand="+" ref_description="SGN-E705597 [FA27CD11]">
      <seq>cgaagaagaagaagaaggaggaagaaggggaaaaaatgatgattttttttctttgacctttcagttttccatatcttctctcctccctctcctttaaaacaataaaaatggaagcagacggtggaggagtactccctataccttctcagaccgcttcatttcctccccatgatgatgatgatcatccagatttttcacctgttggatcgccggagtctcactttattaacgatcattctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgaccagagacaaggaaggatttgtccctgtgaaagtaattgcctctttcagaaaagtgaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgagattaaagatcccaaggtttgtactgtattggtggaaaatttacctgaggatcattcagtgaacaaccttcggagcatatttggccaggctggaaatgtgaagcatattaccattcgtgatccacacactgaaagagatcccagaaaatgcacaactgcagagaagctgctcagtggtaagttgcatgctctcgtggaatataacacagtggaagctgctgaaaaagctgtgaccatttttgatgatgaacaggattggagatttggcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54897" stop="51518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54597" g_stop="54281" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="399" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="494" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="566" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="646" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52344" g_stop="52260" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="731" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52259" i_stop="51990" i_length="270">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51989" g_stop="51942" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="779" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="51941" i_stop="51860" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="51859" g_stop="51818" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="821" r_length="42" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E705597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54597" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52438"/>
          <exon e_start="52344" e_stop="52260"/>
          <exon e_start="51989" e_stop="51942"/>
          <exon e_start="51859" e_stop="51818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGAAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAGGTATGTAATTACAGCTCCTACATCAGAGCATCTGTAGACCTGACTAGTGTGAAGCATGGGATGGGTCTCAAAACTGTTTACTTACATTTAGAATTTTGGTTTTCCTAGTTGTTCATGAGAAGTATCATCACGTTTGGCATCTGACTGGCCATGCTGTTTAGTTTGCATCTAACCACATTGAAGAGCATATGAGAAATTTTGAAGTGGTTGGATTATATTATTTCTTCATGTATGCTTTGGTTATTTCTTCTTCGTTTTTTCTTATTATAGTTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTGAAAAAGCTGTGAGTGTTAATACAGGTTCCTATTCATTTTGGCTGTGTCATTTCATAAAATCTGTTGTTCATTTTGTTGGTGTCTTTTCAGGTGACCATTTTGAATGATGAACAGGATTGGAGATTTGGCTTG</genome_strand>
        <mrna_strand>CGAAGAAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAA.............................................................................................TGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAG..............................................................................................................................................................................................................................................................................TTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTGAAAAAGCT..................................................................................GTGACCATTTTTGATGATGAACAGGATTGGAGATTTGGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589076" ref_strand="+" ref_description="SGN-E589076 [42642]">
      <seq>gaagaataaggaggaagaagaaggggaaaaaaagggaaaaaaatgatgggtttttttctttgacctttcagttttccatatcttctctcttccctctccttaaaaaaataaaaatggaagcagacggtggtggagtactccctataccctctcagaccgcttcatttccgccccatgatgatgatcgtcctgatttttcacctgttggatcgccggagtctcactttattgacgatctttctcagccgtctgatcaactccatgcccaagtcaccgctactgtactcaccgatgatcttcgtaacaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgactagagacaaggaaggatttgtccctatgaaagtaattgcctcttttagaaaagttaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgatattaaagatcccaaggtttgtactgtattggtggaaaatttacctgaggatcattcagtgaataaccttcggagcatatttggccaggctggaaatgtgaagcatattaccattcgtgatccacacactgaaagagatcccagaaaatgcacaactgcagagaagctgctcagtggtaagttgcatgctcttgtgggaatataacacagtggaagctgctgaaagagctgtgaccattttgaatgatgaacaggattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54893" stop="51529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54608" g_stop="54281" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="402" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="497" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="569" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="649" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52344" g_stop="52260" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="734" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52259" i_stop="51990" i_length="270">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51989" g_stop="51942" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="783" r_length="49" r_score="0.917"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="51941" i_stop="51860" i_length="82">
            <donor d_prob="0.982" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="51859" g_stop="51829" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="814" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E589076" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54608" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52438"/>
          <exon e_start="52344" e_stop="52260"/>
          <exon e_start="51989" e_stop="51942"/>
          <exon e_start="51859" e_stop="51829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGATCAAGCGAAGAAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAGGTATGTAATTACAGCTCCTACATCAGAGCATCTGTAGACCTGACTAGTGTGAAGCATGGGATGGGTCTCAAAACTGTTTACTTACATTTAGAATTTTGGTTTTCCTAGTTGTTCATGAGAAGTATCATCACGTTTGGCATCTGACTGGCCATGCTGTTTAGTTTGCATCTAACCACATTGAAGAGCATATGAGAAATTTTGAAGTGGTTGGATTATATTATTTCTTCATGTATGCTTTGGTTATTTCTTCTTCGTTTTTTCTTATTATAGTTGCATGCTCTCGT-GGAATATAACACAGTGGAAGCTGCTGAAAAAGCTGTGAGTGTTAATACAGGTTCCTATTCATTTTGGCTGTGTCATTTCATAAAATCTGTTGTTCATTTTGTTGGTGTCTTTTCAGGTGACCATTTTGAATGATGAACAGGATTGGA</genome_strand>
        <mrna_strand>GA-AGAATAAG-GAGGAAGAAGAAGG-GGA-AAAAAAGGGAAAAAAATGATGGGTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCTTCCCTCTCC-TTAAAAAAATAAAAATGGAAGCAGACGGTGGTGGAGTACTCCCTATACCCTCTCAGACCGCTTCATTTCCGCCCC---ATGATGATGATCGTCCTGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTGACGATCTTTCTCAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCTACTGTACTCACCGATGATCTTCGTAACAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACTAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTATGAAAGTAATTGCCTCTTTTAGAAAAGTTAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGATATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAATAACCTTCGGAGCATATTTGGCCAGGCTGGAAA.............................................................................................TGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAG..............................................................................................................................................................................................................................................................................TTGCATGCTCTTGTGGGAATATAACACAGTGGAAGCTGCTGAAAGAGCT..................................................................................GTGACCATTTTGAATGATGAACAGGATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700174" ref_strand="+" ref_description="SGN-E700174 [FA12BD10]">
      <seq>cgcctaagaagaagaaggaggaagaaggggaaaaaatgatgattttttttctttgacctttcagttttccatatcttctctcctccctctcctttaaaacaataaaaatggaagcagacggtggaggagtactccctataccttctcagaccgcttcatttcctccccatgatgatgatgatcatccagatttttcacctgttggatcgccggagtctcactttattaacgatcattctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgaccagagacaaggaaggatttgtccctgtgaaagtaattgcctctttcagaaaagtgaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgagattaaagatcccaaggtttgtactgtattggtggaaaatttacctgaggatcatttagtgaacaaccttcggagcatatttggccaggctggaaatgtgaagcatattaccattcgtgatccacacactgaaagagatcccagaaaatgcccaactgcagagaagctgctcagtggtaagttgcatgctctcgtggaatataacacagtggaacctgctgaaaaagctgtgaccattttgaatgatgaacaggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54892" stop="51532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54597" g_stop="54281" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="399" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="494" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="566" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="646" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52344" g_stop="52260" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="731" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52259" i_stop="51990" i_length="270">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51989" g_stop="51942" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="779" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="51941" i_stop="51860" i_length="82">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="51859" g_stop="51832" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="807" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E700174" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54597" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52438"/>
          <exon e_start="52344" e_stop="52260"/>
          <exon e_start="51989" e_stop="51942"/>
          <exon e_start="51859" e_stop="51832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGAAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAGGTATGTAATTACAGCTCCTACATCAGAGCATCTGTAGACCTGACTAGTGTGAAGCATGGGATGGGTCTCAAAACTGTTTACTTACATTTAGAATTTTGGTTTTCCTAGTTGTTCATGAGAAGTATCATCACGTTTGGCATCTGACTGGCCATGCTGTTTAGTTTGCATCTAACCACATTGAAGAGCATATGAGAAATTTTGAAGTGGTTGGATTATATTATTTCTTCATGTATGCTTTGGTTATTTCTTCTTCGTTTTTTCTTATTATAGTTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTGAAAAAGCTGTGAGTGTTAATACAGGTTCCTATTCATTTTGGCTGTGTCATTTCATAAAATCTGTTGTTCATTTTGTTGGTGTCTTTTCAGGTGACCATTTTGAATGATGAACAGGATT</genome_strand>
        <mrna_strand>CGCCTAAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTTAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAA.............................................................................................TGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCCCAACTGCAGAGAAGCTGCTCAGTGGTAAG..............................................................................................................................................................................................................................................................................TTGCATGCTCTCGTGGAATATAACACAGTGGAACCTGCTGAAAAAGCT..................................................................................GTGACCATTTTGAATGATGAACAGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483017" ref_strand="+" ref_description="SGN-E483017 [cSTE-6-L10]">
      <seq>agaagaataaggaggaagaagaaggggaaaaaaagggaaaaaaatgatgggtttttttctttgacctttcagttttccatatcttctctcttccctctccttaaaaaaataaaaatggaagcagacggtggtggagtactccctataccctctcagaccgcttcatttccgccccatgatgatgatcgtcctgatttttcacctgttggatcgccggagtctcactttattgacgatctttctcagccgtctgatcaactccatgcccaagtcaccgctactgtactcaccgatgatcttcgtaacaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgactagagacaaggaaggatttgtccctatgaaagtaattgcctcttttagaaaagttaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgatattaaagatcccaaggtttgtactgtattggtggaaaatttacctgaggatcattcagtgaataaccttcggagcatatttggccaggctggaaatgtgaagcatattaccattcgtgatccacacactgaaagagatcccagaaaatgcacaactgcagagaagctgctcagtgggtagttgcatgctcttgtggaaatatacacagtggaagctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="51650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54609" g_stop="54281" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="403" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="498" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="570" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="650" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52344" g_stop="52260" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="735" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52259" i_stop="51990" i_length="270">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51989" g_stop="51950" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="775" r_length="40" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E483017" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54609" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52438"/>
          <exon e_start="52344" e_stop="52260"/>
          <exon e_start="51989" e_stop="51950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGAGATCAAGCGAAGAAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAGGTATGTAATTACAGCTCCTACATCAGAGCATCTGTAGACCTGACTAGTGTGAAGCATGGGATGGGTCTCAAAACTGTTTACTTACATTTAGAATTTTGGTTTTCCTAGTTGTTCATGAGAAGTATCATCACGTTTGGCATCTGACTGGCCATGCTGTTTAGTTTGCATCTAACCACATTGAAGAGCATATGAGAAATTTTGAAGTGGTTGGATTATATTATTTCTTCATGTATGCTTTGGTTATTTCTTCTTCGTTTTTTCTTATTATAGTTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTG</genome_strand>
        <mrna_strand>AGA-AGAATAAG-GAGGAAGAAGAAG-GGGAAAAA-AAGGGAAAAAAATGATGGGTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCTTCCCTCTCCT-TAAAAAAATAAAAATGGAAGCAGACGGTGGTGGAGTACTCCCTATACCCTCTCAGACCGCTTCATTTCCGCCCC---ATGATGATGATCGTCCTGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTGACGATCTTTCTCAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCTACTGTACTCACCGATGATCTTCGTAACAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACTAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTATGAAAGTAATTGCCTCTTTTAGAAAAGTTAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGATATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAATAACCTTCGGAGCATATTTGGCCAGGCTGGAAA.............................................................................................TGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGGTAG..............................................................................................................................................................................................................................................................................TTGCATGCTCTTGTGGAAATATACACAGTGGAAGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454651" ref_strand="+" ref_description="SGN-E454651 [cSTS-24-A3]">
      <seq>agaaggggaaaaaatgggaaaaaaatgatgggtttttttctttgacctttcagttttccatatcttctctcttccctctccttaaaaaaatacaaatggaagcagacggtggaggagtactccctataccctctcagaccgcttcatttcccccgcatgatgatgatcgtcctgatttttcacctgttggatcgccggagtctcactttattgacgatctttctcagccatctgatcaactccatgcccaagtcaccgctactgtactcaccgatgatcttcgtaacaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgactagagacaaggaaggatttgtccctgtgaaagtaattgcctcttttagaaaagttaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctacttgctgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgatattaaagatcccaaggtttgtactgtattggtggaaaatttacctgangatcattcagtgaataaccttcggagcatatttggccaggctggaaatgtgaagcatattaccattcgtgatccacacactgaaagagatcccagaaaatgcacaactgcagagaagctgctcagtggtaagttgcatgctcttgtggaatataacacagtggaagctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54885" stop="51650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54585" g_stop="54281" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="384" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="479" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="551" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="631" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52344" g_stop="52260" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="716" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52259" i_stop="51990" i_length="270">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51989" g_stop="51950" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="756" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E454651" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54585" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52438"/>
          <exon e_start="52344" e_stop="52260"/>
          <exon e_start="51989" e_stop="51950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGAGGAAGAA-GGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAGGTATGTAATTACAGCTCCTACATCAGAGCATCTGTAGACCTGACTAGTGTGAAGCATGGGATGGGTCTCAAAACTGTTTACTTACATTTAGAATTTTGGTTTTCCTAGTTGTTCATGAGAAGTATCATCACGTTTGGCATCTGACTGGCCATGCTGTTTAGTTTGCATCTAACCACATTGAAGAGCATATGAGAAATTTTGAAGTGGTTGGATTATATTATTTCTTCATGTATGCTTTGGTTATTTCTTCTTCGTTTTTTCTTATTATAGTTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTG</genome_strand>
        <mrna_strand>AGAAGGGGAAAAAATGGGAAAAAAATGATGGGTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCTTCCCTCTCC-TTAAAAAAATACAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCCTCTCAGACCGCTTCATTT-C-CCCC-GCATGATGATGATCGTCCTGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTGACGATCTTTCTCAGCCATCTGATCAACTCCATGCCCAAGTCACCGCTACTGTACTCACCGATGATCTTCGTAACAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACTAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTTAGAAAAGTTAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTACTT................................................................................................................................GCTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGATATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGANGATCATTCAGTGAATAACCTTCGGAGCATATTTGGCCAGGCTGGAAA.............................................................................................TGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAG..............................................................................................................................................................................................................................................................................TTGCATGCTCTTGTGGAATATAACACAGTGGAAGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249265" ref_strand="+" ref_description="SGN-E249265 [cLEF-50-F20]">
      <seq>cagatttttcacctgttggatcgccggagtctcactttattaacgatctttctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgaccagagacaaggaaggatttgtccctgtgaaagtaattgcctctttcagaaaagtgaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgagattaaagatcccaaggtttgtactgtattggtggaaaatttacctgaggatcattcagtgaacaaccttcggagcatatttggccaggctggaaatgtgaagcatattaccattcgtgatccacacactgaaagagatcccagaaaatgcacaactgcagagaagctgctcagtggtaagttgcatgctctcgtggaatataacacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54711" stop="51661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54411" g_stop="54281" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="213" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="308" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="380" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="460" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52344" g_stop="52260" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="545" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52259" i_stop="51990" i_length="270">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51989" g_stop="51961" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="574" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E249265" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54411" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52438"/>
          <exon e_start="52344" e_stop="52260"/>
          <exon e_start="51989" e_stop="51961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAGGTATGTAATTACAGCTCCTACATCAGAGCATCTGTAGACCTGACTAGTGTGAAGCATGGGATGGGTCTCAAAACTGTTTACTTACATTTAGAATTTTGGTTTTCCTAGTTGTTCATGAGAAGTATCATCACGTTTGGCATCTGACTGGCCATGCTGTTTAGTTTGCATCTAACCACATTGAAGAGCATATGAGAAATTTTGAAGTGGTTGGATTATATTATTTCTTCATGTATGCTTTGGTTATTTCTTCTTCGTTTTTTCTTATTATAGTTGCATGCTCTCGTGGAATATAACACAGT</genome_strand>
        <mrna_strand>CAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCTTTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAA.............................................................................................TGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAG..............................................................................................................................................................................................................................................................................TTGCATGCTCTCGTGGAATATAACACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577762" ref_strand="+" ref_description="SGN-E577762 [LE15CH10]">
      <seq>ggggaaaaaatgatgattttttttctttgacctttcagttttccatatcttctctcctccctctcctttaaaacaataaaaatggaagcagacggtggaggagtactccctataccttctcagaccgcttcatttcctccccatgatgatgatgatcatccagatttttcacctggtggatcgccggagtctcactttattaacgatcattctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgaccagagacaaggaaggatttgtccctgtgaaagtaattgcctctttcagaaaagtgaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgagattaaagatcccaaggtttgtactgtattggtggaaaatttacctgaggatcattcagtgaacaaccttcggagcatatttggccaggctggaaatgtgaagcatattaccattcgtgatccacacactgaaagagatcccangaaatgcacaactgcagagaagctgctcagtggtaagttgcatgctctcgtggaatataacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54871" stop="51663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54571" g_stop="54281" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="373" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="468" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="540" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="620" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52344" g_stop="52260" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="705" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52259" i_stop="51990" i_length="270">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51989" g_stop="51963" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="732" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E577762" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54571" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52438"/>
          <exon e_start="52344" e_stop="52260"/>
          <exon e_start="51989" e_stop="51963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAGGTATGTAATTACAGCTCCTACATCAGAGCATCTGTAGACCTGACTAGTGTGAAGCATGGGATGGGTCTCAAAACTGTTTACTTACATTTAGAATTTTGGTTTTCCTAGTTGTTCATGAGAAGTATCATCACGTTTGGCATCTGACTGGCCATGCTGTTTAGTTTGCATCTAACCACATTGAAGAGCATATGAGAAATTTTGAAGTGGTTGGATTATATTATTTCTTCATGTATGCTTTGGTTATTTCTTCTTCGTTTTTTCTTATTATAGTTGCATGCTCTCGTGGAATATAACACA</genome_strand>
        <mrna_strand>GGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGGTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAA.............................................................................................TGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCANGAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAG..............................................................................................................................................................................................................................................................................TTGCATGCTCTCGTGGAATATAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333023" ref_strand="+" ref_description="SGN-E333023 [cTOD-19-C23]">
      <seq>agaagaaggaggaagaagaaggggaaaaaatgggggaaaaatgatgattttttttctttgacctttcagttttccatatcttctctcctccctctcctttaaaacaataaaaatggaagcagacggtggaggagtactccctataccttctcagaccgcttcatttcctcctcatgatgatgatgatcatccagatttttcacctgttggatcgccggagtctcactttattaacgatctttctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgaccagagacaaggaaggatttgtccctgtgaaagtaattgcctctttcagaaaagtgaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgagattaaagatcccaaggtttgtactgtattggtggaaaatttacctgaggatcattcagtgaacaaccttcggagcatatttggccaggctggaaatgtgaagcatattaccattcgtgatccacacactgaaagagatcccagaaaatgcacaactgcagagaagctgctcagtggtaagttgcatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="51953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54605" g_stop="54281" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="404" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="499" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="571" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="651" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52344" g_stop="52260" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="736" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52259" i_stop="51990" i_length="270">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51989" g_stop="51979" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="747" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E333023" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54605" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52438"/>
          <exon e_start="52344" e_stop="52260"/>
          <exon e_start="51989" e_stop="51979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCAAGCGAAGAAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAGGTATGTAATTACAGCTCCTACATCAGAGCATCTGTAGACCTGACTAGTGTGAAGCATGGGATGGGTCTCAAAACTGTTTACTTACATTTAGAATTTTGGTTTTCCTAGTTGTTCATGAGAAGTATCATCACGTTTGGCATCTGACTGGCCATGCTGTTTAGTTTGCATCTAACCACATTGAAGAGCATATGAGAAATTTTGAAGTGGTTGGATTATATTATTTCTTCATGTATGCTTTGGTTATTTCTTCTTCGTTTTTTCTTATTATAGTTGCATGCTCT</genome_strand>
        <mrna_strand>AGAAGAAG-GAGGAAGAAGAAG-GGGA-AAAAATGGGGGAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCTCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCTTTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAA.............................................................................................TGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAG..............................................................................................................................................................................................................................................................................TTGCATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213768" ref_strand="+" ref_description="SGN-E213768 [cLEC-76-G21]">
      <seq>agagaagaagaagaaggaggaagaagaaggggaaaaaatgggggaaaaatgatgattttttttctttgacctttcagttttccatatcttctctcctccctctcctttaaaacaataaaaatggaagcagacggtggaggagtactccctataccttctcagaccgcttcatttcctcctcatgatgatgatgatcatccagatttttcacctgttggatcgccggagtctcactttattaacgatctttctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgaccagagacaaggaaggatttgtccctgtgaaagtaattgcctctttcagaaaagtgaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgagattaaagatcccaaggtttgtactgtattggtggaaaatttacctgaggatcattcagtgaacaaccttcggagcatatttggcccagctggaaatgtgaagcatattaccattcgtgatccacacactgaaagagatcccagaaaatgcacaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="51982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54607" g_stop="54281" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="412" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="507" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="579" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="659" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52344" g_stop="52282" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="722" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E213768" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54607" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52438"/>
          <exon e_start="52344" e_stop="52282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATCAAG-CGAA-GAAGAAGAAGAAGGAGGAAGAA-GGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGC</genome_strand>
        <mrna_strand>AGAGAAGAAGAAGAAGGAGGAAGAAGAAGGGGAAAAAATGGGGGAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCTCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCTTTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCCAGCTGGAAA.............................................................................................TGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333970" ref_strand="+" ref_description="SGN-E333970 [cTOD-24-A3]">
      <seq>agaagaaggaggaagaagaaggggaaaaaatgggggaaaaatgatgattttttttctttgacctttcagttttccatatcttctctcctccctctcctttaaaacaataaaaatggaagcagacggtggaggagtactccctataccttctcagaccgcttcatttcctcctcatgatgatgatgatcatccagatttttcacctgttggatcgccggagtctcactttattaacgatctttctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgaccagagacaaggaaggatttgtccctgtgaaagtaattgcctctttcagaaaagtgaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgagattaaagatcccaaggtttgtactgtattggtggaaaattacctgaggatcattcagtgaacaaccttcggagcatatttggccaggctggaaatgtgaagcatattaccattcgtgatccacacactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="52008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54605" g_stop="54281" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="404" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="499" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="571" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="650" r_length="79" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52344" g_stop="52308" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="687" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E333970" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54605" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52438"/>
          <exon e_start="52344" e_stop="52308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCAAGCGAAGAAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCATATTACCATTCGTGATCCACACACTGAA</genome_strand>
        <mrna_strand>AGAAGAAG-GAGGAAGAAGAAG-GGGA-AAAAATGGGGGAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCTCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCTTTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAA-TTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAA.............................................................................................TGTGAAGCATATTACCATTCGTGATCCACACACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340384" ref_strand="+" ref_description="SGN-E340384 [cTOF-2-F6]">
      <seq>ggaggaagaagaaggggaaaaaatgggggaaaaatgatgatttttttttctttgacctttcagttttccatatcttctctcctccctctcctttaaaacaataaaaatggaagcagacggtggaggagtactccctataccttctcagaccgcttcatttcctcctcatgatgatgatgatcatccagatttttcacctgttggatcgccggagtctcactttattaacgatctttctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgaccagagacaaggaaggatttgtccctgtgaaagtaattgcctctttcagaaaagtgaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgagattaaagatcccaaggtttgtactgtattggtggaaaatttacctgaggatcattcagtgaacaaaccttcgagcatatttggccaggctggaaatgtgaagcatattaccattcgtgatccacacactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54893" stop="52008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54594" g_stop="54281" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="398" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="493" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="565" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="645" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52344" g_stop="52308" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="682" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E340384" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54594" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52438"/>
          <exon e_start="52344" e_stop="52308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGAAGAAGGAGGAAGAA-GGGGAAAAAATGATGATTTT-TTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCATATTACCATTCGTGATCCACACACTGAA</genome_strand>
        <mrna_strand>GGAGGAAGAAGAAGGGGAAAAAATGGGGGAAAAATGATGATTTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCTCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCTTTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAAACCTTCGAGCATATTTGGCCAGGCTGGAAA.............................................................................................TGTGAAGCATATTACCATTCGTGATCCACACACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463937" ref_strand="+" ref_description="SGN-E463937 [cPRO-16-M22]">
      <seq>aaaacttcttcgagagatcaagcgaagaagaagaagaagaagaataaggaggaagaagaaggggaaaaaaagggaaaaaaatgatgggtttttttctttgacctttcagttttccatatcttctctcttccctctccttaaaaaaataaaaatggaagcagacggtggtggagtactccctataccctctcagaccgcttcatttccgccccatgatgatgatcgtcctgatttttcacctgttggatcgccggagtctcactttattgacgatctttctcagccgtctgatcaactccatgcccaagtcaccgctactgtactcaccgatgatcttcgtaacaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgactagagacaaggaaggatttgtccctatgaaagtaattgcctcttttagaaaagttaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgatattaaagatcccaaggtttgtactgtattggtggaaaatttacctgaggatcattcagtgaataaccttcggagcatatttggccaggctggaaatgtgaagcatattaccattcgtgatccacacactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54919" stop="52008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54573" g_stop="54281" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="358" r_length="289" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="440" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="535" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="607" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="687" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52344" g_stop="52308" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="724" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E463937" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54573" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52438"/>
          <exon e_start="52344" e_stop="52308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCATATTACCATTCGTGATCCACACACTGAA</genome_strand>
        <mrna_strand>AAGGGAAAAAAATGATGGGTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCTTCCCTCTCC-TTAAAAAAATAAAAATGGAAGCAGACGGTGGTGGAGTACTCCCTATACCCTCTCAGACCGCTTCATTTCCGCCCC---ATGATGATGATCGTCCTGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTGACGATCTTTCTCAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCTACTGTACTCACCGATGATCTTCGTAACAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACTAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTATGAAAGTAATTGCCTCTTTTAGAAAAGTTAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGATATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAATAACCTTCGGAGCATATTTGGCCAGGCTGGAAA.............................................................................................TGTGAAGCATATTACCATTCGTGATCCACACACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486429" ref_strand="+" ref_description="SGN-E486429 [cSTE-22-K7]">
      <seq>agaagaataaggaggaagaagaaggggaaaaaaagggaaaaaaatgatgggtttttttctttgacctttcagttttccatatcttctctcttccctctccttaaaaaaataaaaatggaagcagacggtggtggagtactccctataccctctcagaccgcttcatttccgccccatgatgatgatcgtcctgatttttcacctgttggatcgccggagtctcactttattgacgatctttctcagccgtctgatcaactccatgcccaagtcaccgctactgtactcaccgatgatcttcgtaacaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgactagagacaaggaaggatttgtccctatgaaagtaattgcctcttttagaaaagttaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgatattaaagatcccaaggtttgtactgtattggtggaaaatttacctgaggatcattcagtgaataaccttcggagcatatttggccaggctggaaatgtgaagcatattaccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="52118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54609" g_stop="54281" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="403" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="498" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="570" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="650" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52344" g_stop="52326" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="669" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E486429" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54609" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52438"/>
          <exon e_start="52344" e_stop="52326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGAGATCAAGCGAAGAAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCATATTACCATT</genome_strand>
        <mrna_strand>AGA-AGAATAAG-GAGGAAGAAGAAG-GGGAAAAA-AAGGGAAAAAAATGATGGGTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCTTCCCTCTCCT-TAAAAAAATAAAAATGGAAGCAGACGGTGGTGGAGTACTCCCTATACCCTCTCAGACCGCTTCATTTCCGCCCC---ATGATGATGATCGTCCTGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTGACGATCTTTCTCAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCTACTGTACTCACCGATGATCTTCGTAACAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACTAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTATGAAAGTAATTGCCTCTTTTAGAAAAGTTAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGATATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAATAACCTTCGGAGCATATTTGGCCAGGCTGGAAA.............................................................................................TGTGAAGCATATTACCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262079" ref_strand="+" ref_description="SGN-E262079 [cLEG-58-E9]">
      <seq>aatggaagcagacggtggaggagtactccctataccttctcagaccgcttcatttcctcctcatgatgatgatgatcatccagatttttcacctgttggatcgccggagtctcactttattaacgatctttctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgaccagagacaaggaaggatttgtccctgtgaaagtaattgcctctttcagaaaagtgaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgagattaaagatcccaaggtttgtactgtattggtggaaaatttacctgaggatcattcagtgaacaaacttcggagcatatttggccaggctggaaatgtgaagcatattaccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54791" stop="52118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54491" g_stop="54281" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="293" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="388" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="460" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="540" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52344" g_stop="52326" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="559" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E262079" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54491" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52438"/>
          <exon e_start="52344" e_stop="52326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCATATTACCATT</genome_strand>
        <mrna_strand>AATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCTCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCTTTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAAACTTCGGAGCATATTTGGCCAGGCTGGAAA.............................................................................................TGTGAAGCATATTACCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456478" ref_strand="+" ref_description="SGN-E456478 [cSTS-29-L15]">
      <seq>aggaggaagaaggggaaaaaatgggaaaaaaatgatgggtttttttctttgacctttcagttttccatatcttctctcttccctctccttaaaaaaatacaaatggaagcagacggtggaggagtactccctataccctctcagaccgcttcatttcccccgcatgatgatgatcgtcctgatttttcacctgttggatcgccggagtctcactttattgacgatctttctcagccatctgatcaactccatgcccaagtcaccgctactgtactcaccgatgatcttcgtaacaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgactagagacaaggaaggatttgtccctgtgaaagtaattgcctcttttagaaaagttaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctacttgctgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgatattaaagatcccaaggtttgtactgtattggtggaaaattacctgaggatcattcagtgaataaccttcggagcatatttggccaggctggaaatgtgaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54892" stop="52129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54281" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="391" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="486" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="558" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="637" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52344" g_stop="52336" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="646" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E456478" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52438"/>
          <exon e_start="52344" e_stop="52336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAGAAGGAGGAAGAAGGGGAA-AAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAAGTATGTTGCCTTTTTCTTTTTTCTTAAACTGTTTTCTTTTTTATCATTATATGTTCCTAGATACGATGGTCTTGAATTATTTTGAACTTCTAGTGTGAAGCA</genome_strand>
        <mrna_strand>AGGAGGAAGAAGGGGAAAAAATGGGAAAAAAATGATGGGTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCTTCCCTCTCC-TTAAAAAAATACAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCCTCTCAGACCGCTTCATTT-C-CCCC-GCATGATGATGATCGTCCTGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTGACGATCTTTCTCAGCCATCTGATCAACTCCATGCCCAAGTCACCGCTACTGTACTCACCGATGATCTTCGTAACAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACTAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTTAGAAAAGTTAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTACTT................................................................................................................................GCTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGATATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAA-TTACCTGAGGATCATTCAGTGAATAACCTTCGGAGCATATTTGGCCAGGCTGGAAA.............................................................................................TGTGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460711" ref_strand="+" ref_description="SGN-E460711 [cPRO-32-K3]">
      <seq>ggggaaaaaatggaaaaaaaatgatgggtttttttctttgacctttcagttttccatatcttctctcttccctctccttaaaaaaataaaaatggaagcagacggtggtggagtactccctataccctctcagaccgcttcatttccgccccatgatgatgatcgtcctgatttttcacctgttggatcgccggagtctcactttattgatgatctttctcagccgtctgatcaactccatgcccaagtcaccgctactgtactcaccgatgatcttcgtaacaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgactagagacaaggaaggatttgtccctgtgaaagtaattgcctcttttagaaaagttaagaagcttacgaaggagacatcaataatagcagctgcacttggggaatcttctctgcttgttgtaagccgtgatgggagaaaagtgaagcgacttcatcctcttccattaagtgatattaaagatcccaaggtttgtactgtattgggtggaaatttacctgaggatcattcagtgaataaccttcggagcatatttggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54881" stop="52148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54581" g_stop="54281" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="380" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="475" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="547" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52448" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="617" r_length="70" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E460711" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54581" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAAGAAGGGGAAAAA-ATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCC</genome_strand>
        <mrna_strand>GGGGAAAAAATGGAAAAAAAATGATGGGTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCTTCCCTCTCC-TTAAAAAAATAAAAATGGAAGCAGACGGTGGTGGAGTACTCCCTATACCCTCTCAGACCGCTTCATTTCCGCCCC---ATGATGATGATCGTCCTGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTGATGATCTTTCTCAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCTACTGTACTCACCGATGATCTTCGTAACAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACTAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTTAGAAAAGTTAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTGGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAAGTGAAGCGACTTCATCCTCTTCCATTAAGTGATATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGGTGGAAATTTACCTGAGGATCATTCAGTGAATAACCTTCGGAGCATATTTGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300319" ref_strand="+" ref_description="SGN-E300319 [cLEW-17-M4]">
      <seq>aggaggaagaagaaggggaaaaaatgggggaaaaatgatgattttttttctttgacctttcagttttccatatcttctctcctccctctcctttaaaacaataaaaatggaagcagacggtggaggagtactccctataccttctcagaccgcttcatttcctcctcatgatgatgatgatcatccagatttttcacctgttggatcgccggagtctcactttattaacgatctttctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgaccagagacaaggaaggatttgtccctgtgaaagtaattgcctctttcagaaaagtgaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgagattaaagatcccaaggtttgtactgtattggtggaaaatttacctgaggatcattcagtgaacaaccttcggagcatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54895" stop="52152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54595" g_stop="54281" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="398" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="493" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="565" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52452" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="631" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E300319" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54595" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAGAAGAAGGAGGAAGAA-GGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTT</genome_strand>
        <mrna_strand>AGGAGGAAGAAGAAGGGGAAAAAATGGGGGAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCTCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCTTTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209762" ref_strand="+" ref_description="SGN-E209762 [cLEC-52-B1]">
      <seq>gaagaaggatgaagaagaaggggaaaaaatgggggaaaaatgatgattttttttctttgacctttcacttttccatatcttctctcctccctctcctttaaaacaataaaaatggaagcagacggtggaggagtactccctataccttctcagaccgcttcatttcctcctcatgatgatgatgatcatccagatttttcacctgttggatcgccggagtctcactttattaacgatctttctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgaccagagacaaggaaggatttgtccctgtgaaagtaattgcctctttcagaaaagtgaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgagattaaagatcccaaggtttgtactgtattggtggaaaatttacctgaggatcattcagtgaacaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="52166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54604" g_stop="54281" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="403" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="498" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="570" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52466" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="622" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E209762" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54604" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAGCGAAGAAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACC</genome_strand>
        <mrna_strand>GAAGAAG-GATGAAGAAGAAG-GGGA-AAAAATGGGGGAAAAATGATGATTTTTTTTCTTTGACCTTTCACTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCTCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCTTTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209768" ref_strand="+" ref_description="SGN-E209768 [cLEC-52-D9]">
      <seq>gaagaaggatgaagaagaaggggaaaaaatgggggaaaaatgatgattttttttctttgacctttcacttttccatatcttctctcctccctctcctttaaaacaataaaaatggaagcagacggtggaggagtactccctataccttctcagaccgcttcatttcctcctcatgatgatgatgatcatccagatttttcacctgttggatcgccggagtctcactttattaacgatctttctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgaccagagacaaggaaggatttgtccctgtgaaagtaattgcctctttcagaaaagtgaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgagattaaagatcccaaggtttgtactgtattggtggaaaatttacctgaggatcattcagtgaacaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="52166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54604" g_stop="54281" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="403" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="498" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="570" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52466" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="622" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E209768" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54604" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAGCGAAGAAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACC</genome_strand>
        <mrna_strand>GAAGAAG-GATGAAGAAGAAG-GGGA-AAAAATGGGGGAAAAATGATGATTTTTTTTCTTTGACCTTTCACTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCTCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCTTTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271100" ref_strand="+" ref_description="SGN-E271100 [cLEM-22-M19]">
      <seq>aagaagaaggaggaagaagaaggggaaaaaatgggggaaaaatgatgattttttttctttgacctttcagttttccatatcttctctcctccctctcctttaaaacaataaaaatggaagcagacggtggaggagtactccctataccttctcagaccgcttcatttcctcctcatgatgatgatgatcatccagatttttcacctgttggatcgccggagtctcactttattaacgatctttctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgaccagagacaaggaaggatttgtccctgtgaaagtaattgcctctttcagaaaagtgaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgagattaaagatcccaaggtttgtactgtattggtggaaaatttacctgaggatcattcagtgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="52170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54606" g_stop="54281" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="405" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="500" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="572" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52470" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="620" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E271100" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54606" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATCAAGCGAAGAAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAAC</genome_strand>
        <mrna_strand>AAGAAGAAG-GAGGAAGAAGAAGG-GGA-AAAAATGGGGGAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCTCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCTTTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268860" ref_strand="+" ref_description="SGN-E268860 [cLEM-4-N4]">
      <seq>gaagaaggaggaagaagaaggggaaaaaatgggggaaaaatgatgattttttttctttgacctttcagttttccatatcttctctcctccctctcctttaaaacaataaaaatggaagcagacggtggaggagtactccctataccttctcagaccgcttcatttcctcctcatgatgatgatgatcatccagatttttcacctgttggatcgccggagtctcactttattaacgatctttctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgaccagagacaaggaaggatttgtccctgtgaaagtaattgcctctttcagaaaagtgaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgagattaaagatcccaaggtttgtactgtattggtggaaaatttacctgaggatcattcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="52174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54604" g_stop="54281" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="403" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="498" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="570" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52474" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="614" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E268860" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54604" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAGCGAAGAAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGT</genome_strand>
        <mrna_strand>GAAGAAG-GAGGAAGAAGAAG-GGGA-AAAAATGGGGGAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCTCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCTTTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486513" ref_strand="+" ref_description="SGN-E486513 [cSTE-22-K8]">
      <seq>agaagaataaggaggaagaagaaggggaaaaaaagggaaaaaaatgatgggtttttttctttgacctttcagttttccatatcttctctcttccctctccttaaaaaaataaaaatggaagcagacggtggtggagtactccctataccctctcagaccgcttcatttccgccccatgatgatgatcgtcctgatttttcacctgttggatcgccggagtctcactttattgacgatctttctcagccgtctgatcaactccatgcccaagtcaccgctactgtactcaccgatgatcttcgtaacaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgactagagacaaggaaggatttgtccctatgaaagtaattgcctcttttagaaaagttaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatggggagaaaagtgaagcgacttcatcctctttcattaagtgatattaaagatcccaaggtttgtactgtattggtggaaatttacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="52188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54609" g_stop="54281" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="403" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="498" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="571" r_length="73" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52488" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="600" r_length="29" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E486513" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54609" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGAGATCAAGCGAAGAAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGAT-GGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCT</genome_strand>
        <mrna_strand>AGA-AGAATAAG-GAGGAAGAAGAAG-GGGAAAAA-AAGGGAAAAAAATGATGGGTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCTTCCCTCTCCT-TAAAAAAATAAAAATGGAAGCAGACGGTGGTGGAGTACTCCCTATACCCTCTCAGACCGCTTCATTTCCGCCCC---ATGATGATGATCGTCCTGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTGACGATCTTTCTCAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCTACTGTACTCACCGATGATCTTCGTAACAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACTAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTATGAAAGTAATTGCCTCTTTTAGAAAAGTTAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGGAGAAAAGTGAAGCGACTTCATCCTCTTTCATTAAGTGATATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGG-AAATTTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300299" ref_strand="+" ref_description="SGN-E300299 [cLEW-17-C24]">
      <seq>aagaaggaggaagaagaaggggaaaaaatgggggaaaaatggtgattttttgtctttgacctttcagttttccatatcttctctcctccctctcctttaaaacaataaaaatggaagcagacggtggaggagtactccctataccttctcagaccgcttcatttcctcctcatgatgatgatgatcatccagatttttcacctgttggatcgccggagtctcactttattaacgatctttctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgaccagagacaaggaaggatttgtccctgtgaaagtaattgcctctttcagaaaagtgaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgcgatgggagaaaggtgaagcgacttcatcctcttgcattaagtgagattaaagatcccaaggtttgtactgtattggtggaaaatttacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="52188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54600" g_stop="54281" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="402" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="497" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="569" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52488" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="599" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E300299" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54600" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGAAGAAGAAGAAGAAGGAGGAAGAA-GGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTACCT</genome_strand>
        <mrna_strand>AAG-AAGGAGGAAGAAGAAGGGGAAAAAATGGGGGAAAAATGGTGATTTTTTGTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCTCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCTTTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGCGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTGCATTAAGTGAGATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485183" ref_strand="+" ref_description="SGN-E485183 [cSTE-16-L4]">
      <seq>agaagaataaggaggaagaagaaggggaaaaaaagggaaaaaaatgatgggtttttttctttgacctttcagttttccatatcttctctcttccctctccttaaaaaaataaaaatggaagcagacggtggtggagtactccctataccctctcagaccgcttcatttccgccccatgatgatgatcgtcctgatttttcacctgttggatcgccggagtctcactttattgacgatctttctcagccgtctgatcaactccatgcccaagtcaccgctactgtactcaccgatgatcttcgtaacaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgactagagacaaggaaggatttgtccctatgaaagtaattgcctcttttagaaaagttaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgatattaaagatcccaaggtttgtactgtattggtggaaaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54894" stop="52191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54609" g_stop="54281" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="403" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="498" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="570" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52491" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="597" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E485183" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54609" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGAGATCAAGCGAAGAAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTACTGTATTGGTGGAAAATTTA</genome_strand>
        <mrna_strand>AGA-AGAATAAG-GAGGAAGAAGAAG-GGGAAAAA-AAGGGAAAAAAATGATGGGTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCTTCCCTCTCCT-TAAAAAAATAAAAATGGAAGCAGACGGTGGTGGAGTACTCCCTATACCCTCTCAGACCGCTTCATTTCCGCCCC---ATGATGATGATCGTCCTGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTGACGATCTTTCTCAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCTACTGTACTCACCGATGATCTTCGTAACAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACTAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTATGAAAGTAATTGCCTCTTTTAGAAAAGTTAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGATATTAAAGATCCCAAG....................................................................................GTTTGTACTGTATTGGTGGAAAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272372" ref_strand="+" ref_description="SGN-E272372 [cLEM-19-O11]">
      <seq>gaagaaggaggaagaagaaggggaaaaaatgggggaaaaatgatgattttttttctttgacctttcagttttccatatcttctctcctccctctcctttaaaacaataaaaatggaagcagacggtggaggagtactccctataccttctcagaccgcttcatttcctcctcatgatgatgatgatcatccagatttttcacctgttggatcgccggagtctcactttattaacgatctttctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgaccagagacaaggaaggatttgtccctgtgaaagtaattgcctctttcagaaaagtgaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgagattaaagatcccaaagtttgtacttgtattggtggaaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="52192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54604" g_stop="54281" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="403" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="498" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="570" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52492" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="597" r_length="27" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E272372" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54604" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAGCGAAGAAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGTAC-TGTATTGGTGGAAAATTT</genome_strand>
        <mrna_strand>GAAGAAG-GAGGAAGAAGAAG-GGGA-AAAAATGGGGGAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCTCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCTTTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAA....................................................................................GTTTGTACTTGTATTGGTGGAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569018" ref_strand="+" ref_description="SGN-E569018 [13391]">
      <seq>agaagaagaataaggaggaagaagaaggggaaaaaaagggaaaaaaatgatgggtttttttctttgacctttcagttttccatatcttctctcttccctctccttaaaaaaataaaaatggaagcagacggtggtggagtactccctataccctctcagaccgcttcatttccgccccatgatgatgatcgtcctgatttttcacctgttggatcgccggagtctcactttattgacgatctttctcagccgtctgatcaactccatgcccaagtcaccgctactgtactcaccgatgatcttcgtaacaagatcgttaagcaggttgagtattacttcagcgatgaacaatttgcctactgacaagtttctgttgaagtatgtgactagagacaaggaaggatttgtccctatgaaagtaattgcctcttttagaaaagttaagaagcttacgaaggagacatcaataatagcaggctgcactttagggaatcttctctgcttgttgtaagcccgtggatgggcagaacaggtgaagcgacttcatccctctttccattaagtgatatcaaagatcccaaggtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="52296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54612" g_stop="54281" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.918" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="407" r_length="83" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="504" r_length="97" r_score="0.926"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.973" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52602" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="582" r_length="78" r_score="0.806"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84">
            <donor d_prob="0.964" d_score="0.88"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52517" g_stop="52512" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="588" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E569018" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54612" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52602"/>
          <exon e_start="52517" e_stop="52512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGAGAGATCAAGCGAAGAAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAA-AATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCA-GCTGCAC-TTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAG-CCGT-GATGGG-AGAA-AGGTGAAGCGACTTCAT-CCTC-TTCCATTAAGTGAGATTAAAGATCCCAAGGTATTGCTACTTCTACTGGAACTCGATGAGTATAATCTAAACTAAAGTTTGGATGAATTTATTCTTCTACTTACCATGTTCTAGGTTTGT</genome_strand>
        <mrna_strand>AGAAGA-AGAATAAG-GAGGAAGAAGAAG-GGGA-AAAAAAGGGAAAAAAATGATGGGTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCTTCCCTCTCCTT-AAAAAAATAAAAATGGAAGCAGACGGTGGTGGAGTACTCCCTATACCCTCTCAGACCGCTTCATTTCCGCCCC---ATGATGATGATCGTCCTGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTGACGATCTTTCTCAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCTACTGTACTCACCGATGATCTTCGTAACAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAACAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACTAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTATGAAAGTAATTGCCTCTTTTAGAAAAGTTAAGAAGCTTACGAAGGAGACATCAATAATAGCAGGCTGCACTTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCCGTGGATGGGCAGAACAGGTGAAGCGACTTCATCCCTCTTTCCATTAAGTGATATCAAAGATCCCAAG....................................................................................GTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439740" ref_strand="+" ref_description="SGN-E439740 [cSTA-13-I24]">
      <seq>gaagaagaagaagaagaataaggaggaagaagaaggggaaaaaaagggaaaaaaatgatgggtttttttctttgacctttcagttttccatatcttctctcttccctctccttaaaaaaataaaaatggaagcagacggtggtggagtactccctataccctctcagaccgcttcatttccgccccatgatgatgatcgtcctgatttttcacctgttggatcgccggagtctcactttattgacgatctttctcagccgtctgatcaactccatgcccaagtcaccgctactgtactcaccgatgatcttcgtaacaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgactagagacaaggaaggatttgtccctatgaaagtaattgcctcttttagaaaagttaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgatattaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="52308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54573" g_stop="54281" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="332" r_length="289" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="414" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="509" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52608" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="575" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E439740" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54573" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGAT</genome_strand>
        <mrna_strand>AAGGGAAAAAAATGATGGGTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCTTCCCTCTCC-TTAAAAAAATAAAAATGGAAGCAGACGGTGGTGGAGTACTCCCTATACCCTCTCAGACCGCTTCATTTCCGCCCC---ATGATGATGATCGTCCTGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTGACGATCTTTCTCAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCTACTGTACTCACCGATGATCTTCGTAACAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACTAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTATGAAAGTAATTGCCTCTTTTAGAAAAGTTAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGATATTAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300267" ref_strand="+" ref_description="SGN-E300267 [cLEW-17-C11]">
      <seq>aagaaggaggaagaagaaggggaaaaaatgggggaaaaatgatgattttttttctttgacctttcagttttccatatcttctctcctccctctcctttaaaacaataaaaatggaagcagacggtggaggagtactccctataccttctcagaccgcttcatttcctcctcatgatgatgatgatcatccagatttttcacctgttggatcgccggagtctcactttattaacgatctttctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgaccagagacaaggaaagatttgtccctgtgaaagtaattgcctctttcagaaaagtgaagaagcttacgaaggagacatcaataatagcagctgcacttaaggaatcttctctgcttgttgtaagccgtgatgggagaaaggtgaagcgacttcatcctcttccattaagtgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="52316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54600" g_stop="54281" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="402" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="497" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52616" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="555" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E300267" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54600" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGAAGAAGAAGAAGAAGGAGGAAGAA-GGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGA</genome_strand>
        <mrna_strand>AAG-AAGGAGGAAGAAGAAGGGGAAAAAATGGGGGAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCTCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCTTTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAAGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAAGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444237" ref_strand="+" ref_description="SGN-E444237 [cSTA-42-O1]">
      <seq>agaagaagaataaggaggaagaagaaggggaaaaaaagggaaaaaaatgatgggtttttttctttgacctttcagttttccatatcttctctcttccctctccttaaaaaaataaaaatggaagccgacggtggtggagtacctccctatacccctctcagaccgcttcatttcccgccccatgatgatgatcgtcctgatttttcacctgttggatcgccggagtctcactttattgaccgatctttctcagccgtctgatcaactccatgcccaagtcaccgctacctgtacctcaccgatgatcttcgtaacaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgaccagtttctgttgaagtatgtgactagagacaaggaaggatttgtccctatgaaagtaattgcctcttttagaaaagttaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="52354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54612" g_stop="54281" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.864"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.918" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="412" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="507" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52654" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="527" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E444237" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54612" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGAGAGATCAAGCGAAGAAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTA-CTCCCTATA-CCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATT-AACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCA-CTGTA-CTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAG</genome_strand>
        <mrna_strand>AGAAGA-AGAATAAG-GAGGAAGAAGAAG-GGGA-AAAAAAGGGAAAAAAATGATGGGTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCTTCCCTCTCCTT-AAAAAAATAAAAATGGAAGCCGACGGTGGTGGAGTACCTCCCTATACCCCTCTCAGACCGCTTCATTTCC-CGCC-CCATGATGATGATCGTCCTGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTGACCGATCTTTCTCAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCTACCTGTACCTCACCGATGATCTTCGTAACAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACCAGTTTCTGTTGAAGTATGTGACTAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTATGAAAGTAATTGCCTCTTTTAGAAAAGTTAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246151" ref_strand="+" ref_description="SGN-E246151 [cLEF-40-D7]">
      <seq>agaagaagaagaaggaggaagaagaaggggaaaaaatgggggaaaaatgatgattttttttctttgacctttcagttttccatatcttctctcctccctctcctttaaaacaataaaaatggaagcagacggtggaggagtactccctataccttctcagaccgcttcatttcctcctcatgatgatgatgatcatccagatttttcacctgttggatcgccggagtctcactttattaacgatctttctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgaccagagacaaggaaggatttgtccctgtgaaagtaattgcctctttcagaaaagtgaagaagcttacgaaggagacatcaataatagcagctgcacttagggaatcttctctgcttgttgtaagccgtgatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="52354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54609" g_stop="54281" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="410" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="505" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52654" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="525" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E246151" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54609" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGAGATCAAGCGAAGAAGAAGAAGAAGGAGGAAGAA-GGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGGAG</genome_strand>
        <mrna_strand>AGA-AGAAGAAG-AAGGAGGAAGAAGAAGGGGAAAAAATGGGGGAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCTCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCTTTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485668" ref_strand="+" ref_description="SGN-E485668 [cSTE-19-C21]">
      <seq>aagaagaagaataaggaggaagaagaaggggaaaaaaagggaaaaaaatgatgggtttttttctttgacctttcagttttccatatcttctctcttccctctccttaaaaaaataaaaatggaagcagacggtggtggagtactccctataccctctcagaccgcttcatttccgccccatgatgatgatcgtcctgatttttcacctgttggatcgccggagtctcactttattgacgatctttctcagccgtctgatcaactccatgcccaagtcaccgctactgtactcaccgatgatcttcgtaacaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgactagagacaaggaaggatttgtccctatgaaagtaattgcctcttttagaaaagttaagaagcttacgaaggagacatcaataatagcagctgcacttanggaatcttctctgcttgttgtaagccgtgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="52500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54573" g_stop="54281" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="325" r_length="289" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="407" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52802" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="502" r_length="95" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52673" g_stop="52656" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="520" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E485668" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54573" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52802"/>
          <exon e_start="52673" e_stop="52656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTTGTAAGTCCAATTCTTCTTGTTGATTATAAAGAATATTGATTTATACTCCTTTTAACTTCTTTGTCTTTATGCAAATATTCCTAGGTTATTTCTTTCATTCTCTTTGTTCTTTTTTTCTTATTCTGGAGGTTGTAAGCCGTGATGGG</genome_strand>
        <mrna_strand>AAGGGAAAAAAATGATGGGTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCTTCCCTCTCCTTAAAAA-AATAAAAATGGAAGCAGACGGTGGTGGAGTACTCCCTATACCCTCTCAGACCGCTTCATTTCCGCCCC---ATGATGATGATCGTCCTGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTGACGATCTTTCTCAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCTACTGTACTCACCGATGATCTTCGTAACAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACTAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTATGAAAGTAATTGCCTCTTTTAGAAAAGTTAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTANGGAATCTTCTCTGCTT................................................................................................................................GTTGTAAGCCGTGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207947" ref_strand="+" ref_description="SGN-E207947 [cLEC-34-J7]">
      <seq>agaagaagaagaaggaggaagaagaaggggaaaaaatgggggaaaaatgatgattttttttctttgacctttcagttttccatatcttctctcctccctctcctttaaaacaataaaaatggaagcagacggtggaggagtactccctataccttctcagaccgcttcatttcctcctcatgatgatgatgatcatccagatttttcacctgttggatcgccggagtctcactttattaacgatctttctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgaccagagacaaggaaggatttgtccctgtgaaagtaattgcctctttcagaaaagtgaagaagcttacgaaggagacatcaataatagcagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="52524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54609" g_stop="54281" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="410" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52824" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="483" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E207947" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54609" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGAGATCAAGCGAAGAAGAAGAAGAAGGAGGAAGAA-GGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGC</genome_strand>
        <mrna_strand>AGA-AGAAGAAG-AAGGAGGAAGAAGAAGGGGAAAAAATGGGGGAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCTCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCTTTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478515" ref_strand="+" ref_description="SGN-E478515 [cSTD-5-J3]">
      <seq>agaagaataaggaggaagaaggggaaaaaatgggaaaaaaatgatgggtttttttctttgacctttcagttttccatatcttctctcttccctctccttaaaaaaatacaaatggaagcagacggtggaggagtactccctataccctctcagaccgcttcatttcccccgcatgatgatgatcgtcctgatttttcacctgttggatcgccggagtctcactttattgacgatctttctcagccatctgatcaactccatgcccaagtcaccgctactgtactcaccgatgatcttcgtaacaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgactagagacaaggaaggatttgtccctgtgaaagtaattgcctcttttagaaaagttaagaagcttacgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="52547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54600" g_stop="54281" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="400" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52847" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="450" r_length="50" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E478515" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54600" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGAAGAAGAA-GAAGAAGGAGGAAGAAGGGGAAAAA-ATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAG</genome_strand>
        <mrna_strand>AGAAGAATAAGGAGGAAGAAGGGGAAAAAATGGGAAAAAAATGATGGGTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCTTCCCTCTCC-TTAAAAAAATACAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCCTCTCAGACCGCTTCATTT-C-CCCC-GCATGATGATGATCGTCCTGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTGACGATCTTTCTCAGCCATCTGATCAACTCCATGCCCAAGTCACCGCTACTGTACTCACCGATGATCTTCGTAACAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACTAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTTAGAAAAGTTAAGAAGCTTACGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291641" ref_strand="+" ref_description="SGN-E291641 [cLET-6-P16]">
      <seq>gaagaagaagaagaaggaggaagaagaaggggacaaaatgggggaaaaatgatgattttttttctttgacctttcagttttccatatcttctctcctccctctcctttaaaaccataaaaatggaagcagacggtggaggagtactccctataccttctcagaccgcttcatttcctcctcatgatgatgatgatcatccagatttttcacctgttggatcgccggagtatcactttattaacgatctttctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagccagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagcatgtgaccagagacaaggaaggatttgtccctgtgaaagtaattgcctctttcagaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="52563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54611" g_stop="54281" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="412" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52863" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="446" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E291641" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54611" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAGAGATCAAGCGAAGAAGAAGAAGAAGGAGGAAGAA-GGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGT</genome_strand>
        <mrna_strand>GAAGA-AGAAGAAG-AAGGAGGAAGAAGAAGGGGACAAAATGGGGGAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACCATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCTCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTATCACTTTATTAACGATCTTTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCCAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGCATGTGACCAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E438753" ref_strand="+" ref_description="SGN-E438753 [cSTA-9-B3]">
      <seq>cgaggcgaagaagaagaagaagaagaataaggaggaagaagaaggggaaaaaatgggaaaaaaatgatgggtttttttctttgacctttcagttttccatatcttctctcttccctctccttaaaaaaaataaaaatggaagcagacggtggtggagtactccctataccctctcagaccgcttcatttccgccccatgatgatgatcgtcctgatttttcacctgttggatcgccggagtctcactttattgacgatctttctcagccgtctgatcaactccatgcccaagtcaccgctactgtactcaccgatgatcttcgtaacaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgactagagacaaggaaggatttgtccctgtgaaagtaattgcctcttttagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54895" stop="52564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54589" g_stop="54281" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="342" r_length="307" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="424" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52864" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="457" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E438753" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54589" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAGGAGGAAGAAGGGGAAAAAA-TGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAG</genome_strand>
        <mrna_strand>AAGAAGAAGGGGAAAAAATGGGAAAAAAATGATGGGTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCTTCCCTCTCCTTAAAAAAAATAAAAATGGAAGCAGACGGTGGTGGAGTACTCCCTATACCCTCTCAGACCGCTTCATTTCCGCCCC---ATGATGATGATCGTCCTGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTGACGATCTTTCTCAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCTACTGTACTCACCGATGATCTTCGTAACAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACTAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTTAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444575" ref_strand="+" ref_description="SGN-E444575 [cSTA-43-O6]">
      <seq>agaagaagaagaataaggaggaagaagaaggggaaaaaaagggaaaaaaatgatgggtttttttctttgacctttcagttttccatatcttctctcttccctctccttaaaaaaataaaaatggaagcagacggtggtggagtactccctataccctctcagaccgcttcatttccgccccatgatgatgatcgtcctgatttttcacctgttggatcgccggagtctcactttattgacgatctttctcagccgtctgatcaactccatgcccaagtcaccgctactgtactcaccgatgatcttcgtaacaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgactagagacaaggaaggatttgtccctatgaaagtaattgcctcttttagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="52564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54573" g_stop="54281" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="327" r_length="289" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="409" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52864" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="442" r_length="33" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E444575" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54573" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAG</genome_strand>
        <mrna_strand>AAGGGAAAAAAATGATGGGTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCTTCCCTCTCCTT-AAAAAAATAAAAATGGAAGCAGACGGTGGTGGAGTACTCCCTATACCCTCTCAGACCGCTTCATTTCCGCCCC---ATGATGATGATCGTCCTGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTGACGATCTTTCTCAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCTACTGTACTCACCGATGATCTTCGTAACAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACTAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTATGAAAGTAATTGCCTCTTTTAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478510" ref_strand="+" ref_description="SGN-E478510 [cSTD-5-H3]">
      <seq>agaagaataaggaggaagaaggggaaaaaatgggaaaaaaatgatgggtttttttctttgacctttcagttttccatatcttctctcttccctctccttaaaaaaatacaaatggaagcagacggtggaggagtactccctataccctctcagaccgcttcatttcccccgcatgatgatgatcgtcctgatttttcacctgttggatcgccggagtctcactttattgacgatctttctcagccatctgatcaactccatgcccaagtcaccgctactgtactcaccgatgatcttcgtaacaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgactagagacaaggaaggatttgtccctgtgaaagtaattgcctcttttagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="52565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54600" g_stop="54281" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53102" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="400" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205">
            <donor d_prob="0.035" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52896" g_stop="52865" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="432" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E478510" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54600" e_stop="54281"/>
          <exon e_start="53183" e_stop="53102"/>
          <exon e_start="52896" e_stop="52865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGAAGAAGAA-GAAGAAGGAGGAAGAAGGGGAAAAA-ATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTGGTAAGTGTTGGAGCTTATTTGTTTATGACGAGGAAGGTTCTCGTACTGGCCTTATATATCTTTCCTACTCCCTCTCTATGTTCACTTCTTTTAGTAACTGTTTCGGGGGGCTATATTTTTGTATCCTCTAGTATCTCTCCTATACATATGCACTCCACTACCTTCTTTATATCTTAAAATCTCAACTTTGTGCTCTATCTTGCAGTCCCTGTGAAAGTAATTGCCTCTTTCAGAAAA</genome_strand>
        <mrna_strand>AGAAGAATAAGGAGGAAGAAGGGGAAAAAATGGGAAAAAAATGATGGGTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCTTCCCTCTCC-TTAAAAAAATACAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCCTCTCAGACCGCTTCATTT-C-CCCC-GCATGATGATGATCGTCCTGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTGACGATCTTTCTCAGCCATCTGATCAACTCCATGCCCAAGTCACCGCTACTGTACTCACCGATGATCTTCGTAACAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACTAGAGACAAGGAAGGATTTG.............................................................................................................................................................................................................TCCCTGTGAAAGTAATTGCCTCTTTTAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445712" ref_strand="+" ref_description="SGN-E445712 [cSTA-18-C24]">
      <seq>gaagaagaagaataaggaggaagaagaaggggaaaaaaagggaaaaaaaatgatgggtttttttctttgacctttcagttttccatatcttctctcttccctctccttaaaaaaataaaaatggaagcagacggtggtggagtactccctataccctctcagaccgcttcatttccgccccatgatgatgatcgtcctgatttttcacctgttggatcgccggagtctcactttattgacgatctttctcagccgtctgatcaactccatgcccaagtcaccgctactgtactcaccgatgatcttcgtaacaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctactgacaagtttctgttgaagtatgtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="52822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54281" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="327" r_length="307" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53122" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="389" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E445712" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54281"/>
          <exon e_start="53183" e_stop="53122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGAC</genome_strand>
        <mrna_strand>AAGAAGAAG-GGGAAAAAAAGGGAAAAAAAATGATGGGTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCTTCCCTCTCCTT-AAAAAAATAAAAATGGAAGCAGACGGTGGTGGAGTACTCCCTATACCCTCTCAGACCGCTTCATTTCCGCCCC---ATGATGATGATCGTCCTGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTGACGATCTTTCTCAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCTACTGTACTCACCGATGATCTTCGTAACAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445704" ref_strand="+" ref_description="SGN-E445704 [cSTA-18-A24]">
      <seq>gaagaagaagaataaggaggaagaagaaggggaaaaaaagggaaaaaaaatgatgggtttttttctttgacctttcagttttccatatcttctctcttccctctccttaaaaaaataaaaatggaagcagacggtggtggagtactccctataccctctcagaccgcttcatttccgccccatgatgatgatcgtcctgatttttcacctgttggatcgccggagtctcactttattgacgatctttctcagccgtctgatcaactccatgcccaagtcaccgctactgtactcaccgatgatcttcgtaacaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="52848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54592" g_stop="54281" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="327" r_length="307" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.918" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53148" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="363" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E445704" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54592" e_stop="54281"/>
          <exon e_start="53183" e_stop="53148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTACT</genome_strand>
        <mrna_strand>AAGAAGAAG-GGGAAAAAAAGGGAAAAAAAATGATGGGTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCTTCCCTCTCCTT-AAAAAAATAAAAATGGAAGCAGACGGTGGTGGAGTACTCCCTATACCCTCTCAGACCGCTTCATTTCCGCCCC---ATGATGATGATCGTCCTGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTGACGATCTTTCTCAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCTACTGTACTCACCGATGATCTTCGTAACAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258092" ref_strand="+" ref_description="SGN-E258092 [cLEG-48-M22]">
      <seq>gaagaaggaggaagaagaaggggaaaaaatgggggaaaaatgatgattttttttctttgacctttcagttttccatatcttctctcctccctctcctttaaaacaataaaaatggaagcagacggtggaggagtactccctataccttctcagaccgcttcatttcctcctcatgatgatgatgatcatccagatttttcacctgttggatcgccggagtctcactttattaacgatctttctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttgcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54896" stop="52849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54604" g_stop="54281" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53149" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="356" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E258092" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54604" e_stop="54281"/>
          <exon e_start="53183" e_stop="53149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAGCGAAGAAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTGCCTAC</genome_strand>
        <mrna_strand>GAAGAAG-GAGGAAGAAGAAG-GGGA-AAAAATGGGGGAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCTCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCTTTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTGCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275227" ref_strand="+" ref_description="SGN-E275227 [cLEN-9-O19]">
      <seq>aaggaggaagaacaatgggaaaaaatgggggaaaaatgatgattttttttctttgacctttcagttttccatatcttctctcctccctctcctttaaaacaataaaaatggaagcagacggtggaggagtactccctataccttctcagaccgcttcatttcctcctcatgatgatgatgatcatccagatttttcacctgttggatcgccggagtctcactttattaacgatctttctgagccgtctgatcaactccatgcccaagtcaccgccactgtactcaccgatgatcttcgtagcaagatcgttaagcaggttgagtattacttcagcgatgaaaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="54895" stop="52854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54596" g_stop="54281" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53183" g_stop="53154" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="347" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E275227" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54596" e_stop="54281"/>
          <exon e_start="53183" e_stop="53154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAGAAGAAGGAGGAAGAA-GGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAGGTTCGTTTTTTAATTGTTTTTCTTATGGGTTTGGTTTATTTCATCAATTGACGTAATGGGGTTTTTCATTCTTGGGTGAATTTTTGAATTTTAGGGTTATAGGTTAAAAAGTCGAAGTTCTTGACTGAGTTAGATGATTCTGTGCAATTGGAATGGGTGGGTGTTAAGAAATTTGGTTAATTGTAGGTATACAAGAACAACATACCTAGAGTAATCCCACAAGTGGGTAGCACAGAAATTTATTTAAGTGAAAATTTTCAATTGGATTGATTGGTTGCAGATTTTTATTGTTGCTCTGTAGGTTTTGGTAAGTTAGGGTTACTGGATTAGCTGATTATTATTTAAAAGTTAGAAATGTTTCTTATACACGGTAGAAGAGGTGGAGGTATAAATGGGAATTGTTTCATATGTTCTTAGACTTCCTCATTTGATTGTAGTAAACGAAATCTGATTTTGATTTTATTTCTTTATCATCGGATGTCCCTATCAAGTTCTTCCTGTGGTTCTTAATTATATGAATAGTACTTGAGAAAAAGATTTAATTTTTCTGAACTTGTTTGAGATATTGTAGGTCTGTTCATTATTGTAGTAGCAACATATTGCTGAAACTTTTAAAGGAACTTCTTGATGTTTTCTAGACTTCTATGTGGTACCTGTCAAAGATTTTCTGCATCCATCAGAATGGATGGCAAATGCATGATTTCACTCTTGTATTTCAGAAACCTTTCCTTAAGTGAAGTTGTACAGACTTGGTTAATGAGCATTTGTTTCTTACATACATACATTGGTATTCTCTTACCATAACGTTTGCTTTATACAACCTTCAGGTATTAGCATTTACCTTTGATAACTCTAGCCTTTTACTAGTCCTTGGTATCTATAGCTTTGTTGCTCTATTTTAGTGCCTAAATACAACTACATACCAGTGAGATCCCACAAATGGAGTATGGGGAGGATTAGGTATACACAAACCCTACCCATATCTATGGCTAGATGTTAGTAATAAAGTCTGTACCAGATAATTTTTACTACATGGCAGTTTTTGCTTCTGACCACTCTCCAGTTCTCAAAATTAGAGGAAATTTTGCCTCTTGCAGGTTGAGTATTACTTCAGCGATGAAAATTTG</genome_strand>
        <mrna_strand>AAGGAGGAAGAACAATGGGAAAAAATGGGGGAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCTCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCTTTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTATTACTTCAGCGATGAAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745303" ref_strand="+" ref_description="SGN-E745303 [GI|47105775]">
      <seq>gactcaaagcagagtgttgttagaatagaaaaaaaaaaggaatttattctttgtcgccatggaaatagcttcaagctcaacaaaattcaaatgggtcactgcatttcttctgcttcttgcttgctctgccgctggacaagtacaagatggtccgttagttaacggtaattttgagaccccgccgtcaggtggtttctcttccggcgatggattctccgacggtccatctgaaatccccagctggaaatcaaacggcaccgtagagttagtagaatccgggcaaaaacagggtggaatgatcctcatcgtaccacaaggtagacacgcagttcggcttggaaacgacgccgagataagccaagagctcaaagtagagaaaggttccatttactcgatcactttcagcgcggctcgcacttgcgctcagctagagtcactcaacgtttcggttcctcctgcctcacagaccattgatcttcagactctgtatagtgttcagggctgggattcttacgcgtgggcctttcaggctgaagaagatgatgtgcgggtcgtttttacaaatcctggcatggaagatgaccccacttgtggacccattattgatgatattgctatcaagaagcttttcgttccagataaatcaaaaggtaatgccgtagttaatggagactttgaagaaggtccatggatgtttaggaatgcttctctcggtgttcttctcccgactaacctagacgaggaaacgtcatcgctccctggttggatagttgagtcaaatcgagcagttcgatacatcgatacatatcacttcacagttccagaagggaagagagcaatagaattgctttcaggaaaagaaggcattatatcgcagatggttgaaaccaagcctaacaagccataccgattgacatttttgtttggccatgcaggggattcatgcaaggaaccacttgcaatcatggcctttgctggtgatcaagcccaaaacatacattacactcccaatttcaattcttcatttcagaatgctaacctgaatttcacggccaaggcggacaggacacgtatagcgttctatagtatctattacaatacaagaagtgatgatatgagctctctttgtggacctgttgtggatgatgtgagggttgaactgtctgggtctagcagagtcaaggtgttcgggtttgggtttatgttttggttgttagtcttcgttttttgttaagacgaatagctttctgttccactcaacgtatatggggatccaatgtagtactacagcagggaggtccagaatcggacgccccagcataagaaagttggctgtattaaatagaaggtatgtatgtcttctcgtgtcaatgtagtatgtattggtatttttgcaattgaaatttgaaagtgcttcgttttgttaatctttgggatcctttacaccatcatcttttgtggtgctatgacaaatagtagtactacaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="60102" stop="56824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59803" g_stop="59655" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59654" i_stop="58608" i_length="1047">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58607" g_stop="58107" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="650" r_length="501" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58106" i_stop="57965" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57964" g_stop="57137" g_length="828"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="1478" r_length="828" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1484" polyA_stop="1505"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E745303" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1478</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59803" e_stop="59655"/>
          <exon e_start="58607" e_stop="58107"/>
          <exon e_start="57964" e_stop="57137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCAAAGCAGAGTGTTGTTAGAATAGAAAAAAAAAGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCAAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTGCTTCTTGCTTGCTCTGCCGCTGGACAAGTACAAGATGGTTAGCTTTCTTCTATTCTCTTTCAATTTTTCACTTTGAGAACCTACTTTTTTTTCAACTTACCTCTGTTTGGTATGAGATCTGGTAAATAATATCTTGTATCTTCATTTTAAGCTTCAAATGTATGCTAATTTTAAGCTTTGAGACTCAAATTGGTATGAACATTTAATCACAAATAATATATTTGTAGTTATATTTTGTTATCTCTGTCTGAAACAAAATTAATTTGGTAAGTACCAGAGCAACATATTAGCAAATAAAAAAATAGTACTCACGGTATTTAAGTAAATAGTACTAATATAACATTTAGTTGTAATTAAGTATCACTAATCATTTTGTTGATGTTGATCGTCCTGAGTTGTTATTGCGACACCCTGTAAAAATCATGATTATGTTGCATTTGTATAATTCAATTTAGTTGTTTGTTTCGGTATACAAGTGGAATGACATAAAACATGAAATGTCCGTTGGAAATTACAAATAAAAAAATTATGATTATAGTATTTAATTTAAATTAATTATTTGCTATTTCATATAGTTTTCCTATCCTGATATTTGGTGCTTTTAGTTCTACTTTTTTATTATTTAAGACAATGGACGTTTAGTTTAAATCTTTTCTAAAACCTATCTTATGAAATTCACATATTCATGTCTCACTTTTAAATTCAGATAAAATCTTAGATAATTTTTTTCATATATTCTAATGTTAGGTGAATAAAATTTTAATTGCTAGCGTGATGTAATAGATATCTCATAAAATTAATATAAATACTATGCATTAATTTAGACACGTTATTTTAAAAAATCAATTCTAAAAATTAGCTCCTGATTCCATAAAATAAACAACCGAAGTGAAACAAACAATTAGGATAGGCGATACTCAGTTTTTACTGTTATTTAAGATCAATATATATATTTTTTGAAAGATTTTCGAAAGAAAATTATTGGCTGTGTGAAAGGGTTGTTAATTAAATTGCTTAGTTAAAGTGTGTGTTTCTATAATTTGTAGCACATCGTTAATTTTCAATCCAACTTTACATTTTGCAGGTCCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGTGGTTTCTCTTCCGGCGATGGATTCTCCGACGGTCCATCTGAAATCCCCAGCTGGAAATCAAACGGCACCGTAGAGTTAGTAGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATCGTACCACAAGGTAGACACGCAGTTCGGCTTGGAAACGACGCCGAGATAAGCCAAGAGCTCAAAGTAGAGAAAGGTTCCATTTACTCGATCACTTTCAGCGCGGCTCGCACTTGCGCTCAGCTAGAGTCACTCAACGTTTCAGTTCCTCCTGCCTCACAGACCATTGATCTTCAGACTCTGTATAGTGTTCAGGGCTGGGATTCTTACGCGTGGGCCTTTCAGGCTGAAGAAGATGATGTGCGGGTCGTTTTTACAAATCCTGGCATGGAAGATGACCCCACTTGTGGACCCATTATTGATGATATTGCTATCAAGAAGCTTTTCGTTCCAGATAAATCAAAAGGTAAGGTCATTTCTATTTTCCCACTTCCAGCCTGTTTTGGTCAAATATTTACTGTATTTCGTTTTAATTTATGGGATATAGTTTGATTTGAAACATACGTATAAAAGCTAGTAATTGTTATTTAATTTGGTTATTGGAACAGGTAATGCCGTAGTTAATGGAGACTTTGAAGAAGGTCCATGGATGTTTAGGAATGCTTCTCTCGGTGTTCTTCTCCCGACTAACCTAGACGAGGAAACGTCATCGCTCCCTGGTTGGATAGTTGAGTCAAATCGAGCAGTTCGATACATCGATACATATCACTTCACAGTTCCAGAAGGGAAGAGAGCAATAGAATTGCTTTCAGGAAAAGAAGGCATTATATCGCAGATGGTTGAAACCAAGCCTAACAAGCCATACCGATTGACATTTTTGTTTGGCCATGCAGGGGATTCATGCAAGGAACCACTTGCAATCATGGCCTTTGCTGGTGATCAAGCCCAAAACATACATTACACTCCCAATTTCAATTCTTCATTTCAGAATGCTAACCTGAATTTCACGGCCAAGGCGGACAGGACACGTATAGCGTTCTATAGTATCTATTACAATACAAGAAGTGATGATATGAGCTCTCTTTGTGGACCTGTTGTGGATGATGTGAGGGTTGAACTGTCTGGGTCTAGCAGAGTCAAGGTGTTCGGGTTTGGGTTTATGTTTTGGTTGTTAGTCTTCGTTTTTTGTTAAGACGAATAGCTTTCTGTTCCACTCAACGTATATGGGGATCCAATGTAGTACTACAGCAGGGAGGTCCAGAATCGGACGCCCCAGCATAAGAAAGTTGGCTGTATTAAATAGAAGGTATGTATGTCTTCTCGTGTCAATGTAGTATGTATTGGTATTTTTGCAATTGAAATTTGAAAGTGCTTCGTTTTGTTAATCTTTGGGATCCTTTACACCATCATCTTTTGTGGTGCTATGACAAATAGTA</genome_strand>
        <mrna_strand>GACTCAAAGCAGAGTGTTGTTAGAATAGAAAAAAAAAAGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCAAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTGCTTCTTGCTTGCTCTGCCGCTGGACAAGTACAAGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGTGGTTTCTCTTCCGGCGATGGATTCTCCGACGGTCCATCTGAAATCCCCAGCTGGAAATCAAACGGCACCGTAGAGTTAGTAGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATCGTACCACAAGGTAGACACGCAGTTCGGCTTGGAAACGACGCCGAGATAAGCCAAGAGCTCAAAGTAGAGAAAGGTTCCATTTACTCGATCACTTTCAGCGCGGCTCGCACTTGCGCTCAGCTAGAGTCACTCAACGTTTCGGTTCCTCCTGCCTCACAGACCATTGATCTTCAGACTCTGTATAGTGTTCAGGGCTGGGATTCTTACGCGTGGGCCTTTCAGGCTGAAGAAGATGATGTGCGGGTCGTTTTTACAAATCCTGGCATGGAAGATGACCCCACTTGTGGACCCATTATTGATGATATTGCTATCAAGAAGCTTTTCGTTCCAGATAAATCAAAAG..............................................................................................................................................GTAATGCCGTAGTTAATGGAGACTTTGAAGAAGGTCCATGGATGTTTAGGAATGCTTCTCTCGGTGTTCTTCTCCCGACTAACCTAGACGAGGAAACGTCATCGCTCCCTGGTTGGATAGTTGAGTCAAATCGAGCAGTTCGATACATCGATACATATCACTTCACAGTTCCAGAAGGGAAGAGAGCAATAGAATTGCTTTCAGGAAAAGAAGGCATTATATCGCAGATGGTTGAAACCAAGCCTAACAAGCCATACCGATTGACATTTTTGTTTGGCCATGCAGGGGATTCATGCAAGGAACCACTTGCAATCATGGCCTTTGCTGGTGATCAAGCCCAAAACATACATTACACTCCCAATTTCAATTCTTCATTTCAGAATGCTAACCTGAATTTCACGGCCAAGGCGGACAGGACACGTATAGCGTTCTATAGTATCTATTACAATACAAGAAGTGATGATATGAGCTCTCTTTGTGGACCTGTTGTGGATGATGTGAGGGTTGAACTGTCTGGGTCTAGCAGAGTCAAGGTGTTCGGGTTTGGGTTTATGTTTTGGTTGTTAGTCTTCGTTTTTTGTTAAGACGAATAGCTTTCTGTTCCACTCAACGTATATGGGGATCCAATGTAGTACTACAGCAGGGAGGTCCAGAATCGGACGCCCCAGCATAAGAAAGTTGGCTGTATTAAATAGAAGGTATGTATGTCTTCTCGTGTCAATGTAGTATGTATTGGTATTTTTGCAATTGAAATTTGAAAGTGCTTCGTTTTGTTAATCTTTGGGATCCTTTACACCATCATCTTTTGTGGTGCTATGACAAATAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577571" ref_strand="+" ref_description="SGN-E577571 [LE15AB10]">
      <seq>ttttttttaacaaaacgaagcactttcaaatttcaattgcaaaaataccaatacatactacattgacacgagaagacatacataccttctatttaatacagccaactttcttatgctggggcgtccgattctggacctccctgctgtagtactacattggatccccatatacgttgagtggaacagaaagctattcgtcttaacaaaaaacgaagactaacaaccaaaacataaacccaaacccgaacaccttgactctgctagacccagacagttcaaccctcacatcatccacaacaggtccacaaagagagctcatatcatcacttcttgtattgtaatagatactatagaacgctatacgtgtcctgtccgccttggccgtgaaattcaggttagcattctgaaatgaagaattgaaattgggagtgtaatgtatgttttgggcttgatcaccagcaaaggccatgattgcaagtgttccttgcatgaatcccctgcatggccaaacaaaaatgtcaatcggtatggcttgttaggcttggtttcaaccatctgcgatataatgccttcttttcctgaaagcaattctattgctctcttcccttctggaactgtgaagtgatatgtatcgatgtatcgaactgctcgatttgactcaactatccaaccagggagcgatgacgtttcctcgtctaggttagtcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="+" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="56888" stop="58191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57182" g_stop="57891" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="+" ref_id="SGN-E577571" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57182" e_stop="57891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGATTAACAAAACGAAGCACTTTCAAATTTCAATTGCAAAAATACCAATACATACTACATTGACACGAGAAGACATACATACCTTCTATTTAATACAGCCAACTTTCTTATGCTGGGGCGTCCGATTCTGGACCTCCCTGCTGTAGTACTACATTGGATCCCCATATACGTTGAGTGGAACAGAAAGCTATTCGTCTTAACAAAAAACGAAGACTAACAACCAAAACATAAACCCAAACCCGAACACCTTGACTCTGCTAGACCCAGACAGTTCAACCCTCACATCATCCACAACAGGTCCACAAAGAGAGCTCATATCATCACTTCTTGTATTGTAATAGATACTATAGAACGCTATACGTGTCCTGTCCGCCTTGGCCGTGAAATTCAGGTTAGCATTCTGAAATGAAGAATTGAAATTGGGAGTGTAATGTATGTTTTGGGCTTGATCACCAGCAAAGGCCATGATTGCAAGTGGTTCCTTGCATGAATCCCCTGCATGGCCAAACAAAAATGTCAATCGGTATGGCTTGTTAGGCTTGGTTTCAACCATCTGCGATATAATGCCTTCTTTTCCTGAAAGCAATTCTATTGCTCTCTTCCCTTCTGGAACTGTGAAGTGATATGTATCGATGTATCGAACTGCTCGATTTGACTCAACTATCCAACCAGGGAGCGATGACGTTTCCTCGTCTAGGTTAGTCGGG</genome_strand>
        <mrna_strand>TTTTTTTTAACAAAACGAAGCACTTTCAAATTTCAATTGCAAAAATACCAATACATACTACATTGACACGAGAAGACATACATACCTTCTATTTAATACAGCCAACTTTCTTATGCTGGGGCGTCCGATTCTGGACCTCCCTGCTGTAGTACTACATTGGATCCCCATATACGTTGAGTGGAACAGAAAGCTATTCGTCTTAACAAAAAACGAAGACTAACAACCAAAACATAAACCCAAACCCGAACACCTTGACTCTGCTAGACCCAGACAGTTCAACCCTCACATCATCCACAACAGGTCCACAAAGAGAGCTCATATCATCACTTCTTGTATTGTAATAGATACTATAGAACGCTATACGTGTCCTGTCCGCCTTGGCCGTGAAATTCAGGTTAGCATTCTGAAATGAAGAATTGAAATTGGGAGTGTAATGTATGTTTTGGGCTTGATCACCAGCAAAGGCCATGATTGCAAGT-GTTCCTTGCATGAATCCCCTGCATGGCCAAACAAAAATGTCAATCGGTATGGCTTGTTAGGCTTGGTTTCAACCATCTGCGATATAATGCCTTCTTTTCCTGAAAGCAATTCTATTGCTCTCTTCCCTTCTGGAACTGTGAAGTGATATGTATCGATGTATCGAACTGCTCGATTTGACTCAACTATCCAACCAGGGAGCGATGACGTTTCCTCGTCTAGGTTAGTCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690093" ref_strand="+" ref_description="SGN-E690093 [LH_Ea02J19]">
      <seq>cgttctcggtgttcttctcccgactaacctagacgaggaaacatcgtcgctccctggttggatagttgagtcaaatcgagcagttcgatacatcgatacatatcacttcacagttccagaagggaagagagcaatataattgctttcaggaaaagaaggcattatatcgcagatggttgaaaccaagcctaacaagccatacagattgacatttttgtttggccatgcaggggattcatgcaaggaaccactagcaatcatggcctttgctggtgatcaagcccaaaacatacattacactcccaatttcaattcttcatttcagaatgctaacctgaatttcacagccaaggcggacaggacacgtatagcgttctatagtatctattacaatacaagaagtgatgatatgagctctctttgtggacctgttgtggatgatgtgagggttgaactgtctgggtctagcagagtcaaggtgttcgggtttgggtttatgttttggttgttagtcttagttttttgttaagatgaatagctttctgttccactcaacgtatatggggatccaatgtagtactacagcagggaggtccagaatcggacgccccagcataagaaagttggctgtattaaatagaaggtatgtatgtcttctcgtgtcaatgcagtatgtattggtatttttgccattgaaatttgaaagtgcttcatgttgtttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="58210" stop="56888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57910" g_stop="57187" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E690093" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57910" e_stop="57187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCGGTGTTCTTCTCCCGACTAACCTAGACGAGGAAACGTCATCGCTCCCTGGTTGGATAGTTGAGTCAAATCGAGCAGTTCGATACATCGATACATATCACTTCACAGTTCCAGAAGGGAAGAGAGCAATAGAATTGCTTTCAGGAAAAGAAGGCATTATATCGCAGATGGTTGAAACCAAGCCTAACAAGCCATACCGATTGACATTTTTGTTTGGCCATGCAGGGGATTCATGCAAGGAACCACTTGCAATCATGGCCTTTGCTGGTGATCAAGCCCAAAACATACATTACACTCCCAATTTCAATTCTTCATTTCAGAATGCTAACCTGAATTTCACGGCCAAGGCGGACAGGACACGTATAGCGTTCTATAGTATCTATTACAATACAAGAAGTGATGATATGAGCTCTCTTTGTGGACCTGTTGTGGATGATGTGAGGGTTGAACTGTCTGGGTCTAGCAGAGTCAAGGTGTTCGGGTTTGGGTTTATGTTTTGGTTGTTAGTCTTCGTTTTTTGTTAAGACGAATAGCTTTCTGTTCCACTCAACGTATATGGGGATCCAATGTAGTACTACAGCAGGGAGGTCCAGAATCGGACGCCCCAGCATAAGAAAGTTGGCTGTATTAAATAGAAGGTATGTATGTCTTCTCGTGTCAATGTAGTATGTATTGGTATTTTTGCAATTGAAATTTGAAAGTGCTTCGTTTTGTTAAT</genome_strand>
        <mrna_strand>CGT-TCTCGGTGTTCTTCTCCCGACTAACCTAGACGAGGAAACATCGTCGCTCCCTGGTTGGATAGTTGAGTCAAATCGAGCAGTTCGATACATCGATACATATCACTTCACAGTTCCAGAAGGGAAGAGAGCAATATAATTGCTTTCAGGAAAAGAAGGCATTATATCGCAGATGGTTGAAACCAAGCCTAACAAGCCATACAGATTGACATTTTTGTTTGGCCATGCAGGGGATTCATGCAAGGAACCACTAGCAATCATGGCCTTTGCTGGTGATCAAGCCCAAAACATACATTACACTCCCAATTTCAATTCTTCATTTCAGAATGCTAACCTGAATTTCACAGCCAAGGCGGACAGGACACGTATAGCGTTCTATAGTATCTATTACAATACAAGAAGTGATGATATGAGCTCTCTTTGTGGACCTGTTGTGGATGATGTGAGGGTTGAACTGTCTGGGTCTAGCAGAGTCAAGGTGTTCGGGTTTGGGTTTATGTTTTGGTTGTTAGTCTTAGTTTTTTGTTAAGATGAATAGCTTTCTGTTCCACTCAACGTATATGGGGATCCAATGTAGTACTACAGCAGGGAGGTCCAGAATCGGACGCCCCAGCATAAGAAAGTTGGCTGTATTAAATAGAAGGTATGTATGTCTTCTCGTGTCAATGCAGTATGTATTGGTATTTTTGCCATTGAAATTTGAAAGTGCTTCATGTTGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229819" ref_strand="+" ref_description="SGN-E229819 [cLEL-33-H12](-)">
      <seq>gcggacaggacacgtatagcgttctatagtatctattacaatacaagaagtgatgatatgagctctctttgtggacctgttgtggatgatgtgagggttgaactgtctgggtctagcagagtcaaggtgttcgggtttgggtttatgttttggttgttagtcttcgttttttgttaagacgaatagctttctgttccactcaacgtatatggggatccaatgtagtactacagcagggaggtccagaatcggacgccccagcataagaaagttggctgtattaaatagaaggtatgtatgtcttctcgtgtcaatgtagtatgtattggtatttttgcaattgaaatttgaaagtgcttcattttgttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="57857" stop="56888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57557" g_stop="57189" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="370" polyA_stop="387"/>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E229819" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57557" e_stop="57189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGACAGGACACGTATAGCGTTCTATAGTATCTATTACAATACAAGAAGTGATGATATGAGCTCTCTTTGTGGACCTGTTGTGGATGATGTGAGGGTTGAACTGTCTGGGTCTAGCAGAGTCAAGGTGTTCGGGTTTGGGTTTATGTTTTGGTTGTTAGTCTTCGTTTTTTGTTAAGACGAATAGCTTTCTGTTCCACTCAACGTATATGGGGATCCAATGTAGTACTACAGCAGGGAGGTCCAGAATCGGACGCCCCAGCATAAGAAAGTTGGCTGTATTAAATAGAAGGTATGTATGTCTTCTCGTGTCAATGTAGTATGTATTGGTATTTTTGCAATTGAAATTTGAAAGTGCTTCGTTTTGTTA</genome_strand>
        <mrna_strand>GCGGACAGGACACGTATAGCGTTCTATAGTATCTATTACAATACAAGAAGTGATGATATGAGCTCTCTTTGTGGACCTGTTGTGGATGATGTGAGGGTTGAACTGTCTGGGTCTAGCAGAGTCAAGGTGTTCGGGTTTGGGTTTATGTTTTGGTTGTTAGTCTTCGTTTTTTGTTAAGACGAATAGCTTTCTGTTCCACTCAACGTATATGGGGATCCAATGTAGTACTACAGCAGGGAGGTCCAGAATCGGACGCCCCAGCATAAGAAAGTTGGCTGTATTAAATAGAAGGTATGTATGTCTTCTCGTGTCAATGTAGTATGTATTGGTATTTTTGCAATTGAAATTTGAAAGTGCTTCATTTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353634" ref_strand="+" ref_description="SGN-E353634 [cTOS-10-C22]">
      <seq>atgcttctctcggtgttcttctcccgactaacctagacgaggaaacgtcatcgctccctggttggatagttgagtcaaatcgagcagttcgatacatcgatacatatcacttcacagttccagaagggaagagagcaatagaattgctttcaggaaaagaaggcattatatcgcagatggttgaaaccaagcctaacaagccataccgattgacatttttgtttggccatgcaggggattcatgcaaggaaccacttgcaatcatggcctttgctggtgatcaagcccaaaacatacattacactcccaatttcaattcttcatttcagaatgctaacctgaatttcacggccaaggcggacaggacacgtatagcgttctatagtatctattacaatacaagaagtgatgatatgagctctctttgtggacctgttgtggatgatgtgagggttgaactgtctgggtctagcagagtcaaggtgttcgggtttgggtttatgttttggttgttagtcttcgttttttgttaagacgaatagctttctgttccactcaacgtatatggggatccaatgtagtactacagcagggaggtccagaatcggacgccccagcataagaaagttggctgtattaaatagaaggtatgtatgtcttctcgtgtcaatgtagtatgtattggtatttttgcaattgaaatttgaaagtgcctcattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="58213" stop="56892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57913" g_stop="57192" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="722" r_length="722" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E353634" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57913" e_stop="57192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTTCTCTCGGTGTTCTTCTCCCGACTAACCTAGACGAGGAAACGTCATCGCTCCCTGGTTGGATAGTTGAGTCAAATCGAGCAGTTCGATACATCGATACATATCACTTCACAGTTCCAGAAGGGAAGAGAGCAATAGAATTGCTTTCAGGAAAAGAAGGCATTATATCGCAGATGGTTGAAACCAAGCCTAACAAGCCATACCGATTGACATTTTTGTTTGGCCATGCAGGGGATTCATGCAAGGAACCACTTGCAATCATGGCCTTTGCTGGTGATCAAGCCCAAAACATACATTACACTCCCAATTTCAATTCTTCATTTCAGAATGCTAACCTGAATTTCACGGCCAAGGCGGACAGGACACGTATAGCGTTCTATAGTATCTATTACAATACAAGAAGTGATGATATGAGCTCTCTTTGTGGACCTGTTGTGGATGATGTGAGGGTTGAACTGTCTGGGTCTAGCAGAGTCAAGGTGTTCGGGTTTGGGTTTATGTTTTGGTTGTTAGTCTTCGTTTTTTGTTAAGACGAATAGCTTTCTGTTCCACTCAACGTATATGGGGATCCAATGTAGTACTACAGCAGGGAGGTCCAGAATCGGACGCCCCAGCATAAGAAAGTTGGCTGTATTAAATAGAAGGTATGTATGTCTTCTCGTGTCAATGTAGTATGTATTGGTATTTTTGCAATTGAAATTTGAAAGTGCTTCGTTTTG</genome_strand>
        <mrna_strand>ATGCTTCTCTCGGTGTTCTTCTCCCGACTAACCTAGACGAGGAAACGTCATCGCTCCCTGGTTGGATAGTTGAGTCAAATCGAGCAGTTCGATACATCGATACATATCACTTCACAGTTCCAGAAGGGAAGAGAGCAATAGAATTGCTTTCAGGAAAAGAAGGCATTATATCGCAGATGGTTGAAACCAAGCCTAACAAGCCATACCGATTGACATTTTTGTTTGGCCATGCAGGGGATTCATGCAAGGAACCACTTGCAATCATGGCCTTTGCTGGTGATCAAGCCCAAAACATACATTACACTCCCAATTTCAATTCTTCATTTCAGAATGCTAACCTGAATTTCACGGCCAAGGCGGACAGGACACGTATAGCGTTCTATAGTATCTATTACAATACAAGAAGTGATGATATGAGCTCTCTTTGTGGACCTGTTGTGGATGATGTGAGGGTTGAACTGTCTGGGTCTAGCAGAGTCAAGGTGTTCGGGTTTGGGTTTATGTTTTGGTTGTTAGTCTTCGTTTTTTGTTAAGACGAATAGCTTTCTGTTCCACTCAACGTATATGGGGATCCAATGTAGTACTACAGCAGGGAGGTCCAGAATCGGACGCCCCAGCATAAGAAAGTTGGCTGTATTAAATAGAAGGTATGTATGTCTTCTCGTGTCAATGTAGTATGTATTGGTATTTTTGCAATTGAAATTTGAAAGTGCCTCATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350959" ref_strand="+" ref_description="SGN-E350959 [cTOS-7-J24]">
      <seq>atgcttctctcggtgttcttctcccgactaacctagacgaggaaacgtcatcgctccctggttggatagttgagtcaaatcgagcagttcgatacatcgatacatatcacttcacagttccagaagggaagagagcaatagaattgctttcaggaaaagaaggcattatatcgcagatggttgaaaccaagcctaacaagccataccgattgacatttttgtttggccatgcaggggattcatgcaaggaaccacttgcaatcatggcctttgctggtgatcaagcccaaaacatacattacactcccaatttcaattcttcatttcagaatgctaacctgaatttcacggccaaggcggacaggacacgtatagcgttctatagtatctattacaatacaagaagtgatgatatgagctctctttgtggacctgttgtggatgatgtgagggttgaactgtctgggtctagcagagtcaaggtgttcgggtttgggtttatgttttggttgttagtcttcgttttttgttaagacgaatagctttctgttccactcaacgtatatggggatccaatgtagtactacagcagggaggtccagaatcggacgccccagcataagaaagttggctgtattaaatagaaggtatgtatgtcttctcgtgtcaatgtagtatgtattggtattttttgcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="58213" stop="56915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57913" g_stop="57215" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E350959" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57913" e_stop="57215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTTCTCTCGGTGTTCTTCTCCCGACTAACCTAGACGAGGAAACGTCATCGCTCCCTGGTTGGATAGTTGAGTCAAATCGAGCAGTTCGATACATCGATACATATCACTTCACAGTTCCAGAAGGGAAGAGAGCAATAGAATTGCTTTCAGGAAAAGAAGGCATTATATCGCAGATGGTTGAAACCAAGCCTAACAAGCCATACCGATTGACATTTTTGTTTGGCCATGCAGGGGATTCATGCAAGGAACCACTTGCAATCATGGCCTTTGCTGGTGATCAAGCCCAAAACATACATTACACTCCCAATTTCAATTCTTCATTTCAGAATGCTAACCTGAATTTCACGGCCAAGGCGGACAGGACACGTATAGCGTTCTATAGTATCTATTACAATACAAGAAGTGATGATATGAGCTCTCTTTGTGGACCTGTTGTGGATGATGTGAGGGTTGAACTGTCTGGGTCTAGCAGAGTCAAGGTGTTCGGGTTTGGGTTTATGTTTTGGTTGTTAGTCTTCGTTTTTTGTTAAGACGAATAGCTTTCTGTTCCACTCAACGTATATGGGGATCCAATGTAGTACTACAGCAGGGAGGTCCAGAATCGGACGCCCCAGCATAAGAAAGTTGGCTGTATTAAATAGAAGGTATGTATGTCTTCTCGTGTCAATGTAGTATGTATTGGTATTTTTGCAATTG</genome_strand>
        <mrna_strand>ATGCTTCTCTCGGTGTTCTTCTCCCGACTAACCTAGACGAGGAAACGTCATCGCTCCCTGGTTGGATAGTTGAGTCAAATCGAGCAGTTCGATACATCGATACATATCACTTCACAGTTCCAGAAGGGAAGAGAGCAATAGAATTGCTTTCAGGAAAAGAAGGCATTATATCGCAGATGGTTGAAACCAAGCCTAACAAGCCATACCGATTGACATTTTTGTTTGGCCATGCAGGGGATTCATGCAAGGAACCACTTGCAATCATGGCCTTTGCTGGTGATCAAGCCCAAAACATACATTACACTCCCAATTTCAATTCTTCATTTCAGAATGCTAACCTGAATTTCACGGCCAAGGCGGACAGGACACGTATAGCGTTCTATAGTATCTATTACAATACAAGAAGTGATGATATGAGCTCTCTTTGTGGACCTGTTGTGGATGATGTGAGGGTTGAACTGTCTGGGTCTAGCAGAGTCAAGGTGTTCGGGTTTGGGTTTATGTTTTGGTTGTTAGTCTTCGTTTTTTGTTAAGACGAATAGCTTTCTGTTCCACTCAACGTATATGGGGATCCAATGTAGTACTACAGCAGGGAGGTCCAGAATCGGACGCCCCAGCATAAGAAAGTTGGCTGTATTAAATAGAAGGTATGTATGTCTTCTCGTGTCAATGTAGTATGTATTGGTATTTTTTGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351136" ref_strand="+" ref_description="SGN-E351136 [cTOS-6-N2]">
      <seq>atgcttctctcggtgttcttctcccgactaacctagacgaggaaacgtcatcgctccctggttggatagttgagtcaaatcgagcagttcgatacatcgatacatatcacttcacagttccagaagggaagagagcaatagaattgctttcaggaaaagaaggcattatatcgcagatggttgaaaccaagcctaacaagccataccgattgacatttttgtttggccatgcaggggattcatgcaaggaaccacttgcaatcatggcctttgctggtgatcaagcccaaaacatacattacactcccaatttcaattcttcatttcagaatgctaacctgaatttcacggccaaggcggacaggacacgtatagcgttctatagtatctattacaatacaagaagtgatgatatgagctctctttgtggacctgttgtggatgatgtgagggttgaactgtctgggtctagcagagtcaaggtgttcgggtttgggtttatgttttggttgttagtcttcgttttttgttaagacgaatagctttctgttccactcaacgtatatggggatccaatgtagtactacagcagggaggtccagaatcggacgccccagcataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="58213" stop="56992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57913" g_stop="57292" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E351136" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57913" e_stop="57292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTTCTCTCGGTGTTCTTCTCCCGACTAACCTAGACGAGGAAACGTCATCGCTCCCTGGTTGGATAGTTGAGTCAAATCGAGCAGTTCGATACATCGATACATATCACTTCACAGTTCCAGAAGGGAAGAGAGCAATAGAATTGCTTTCAGGAAAAGAAGGCATTATATCGCAGATGGTTGAAACCAAGCCTAACAAGCCATACCGATTGACATTTTTGTTTGGCCATGCAGGGGATTCATGCAAGGAACCACTTGCAATCATGGCCTTTGCTGGTGATCAAGCCCAAAACATACATTACACTCCCAATTTCAATTCTTCATTTCAGAATGCTAACCTGAATTTCACGGCCAAGGCGGACAGGACACGTATAGCGTTCTATAGTATCTATTACAATACAAGAAGTGATGATATGAGCTCTCTTTGTGGACCTGTTGTGGATGATGTGAGGGTTGAACTGTCTGGGTCTAGCAGAGTCAAGGTGTTCGGGTTTGGGTTTATGTTTTGGTTGTTAGTCTTCGTTTTTTGTTAAGACGAATAGCTTTCTGTTCCACTCAACGTATATGGGGATCCAATGTAGTACTACAGCAGGGAGGTCCAGAATCGGACGCCCCAGCATAA</genome_strand>
        <mrna_strand>ATGCTTCTCTCGGTGTTCTTCTCCCGACTAACCTAGACGAGGAAACGTCATCGCTCCCTGGTTGGATAGTTGAGTCAAATCGAGCAGTTCGATACATCGATACATATCACTTCACAGTTCCAGAAGGGAAGAGAGCAATAGAATTGCTTTCAGGAAAAGAAGGCATTATATCGCAGATGGTTGAAACCAAGCCTAACAAGCCATACCGATTGACATTTTTGTTTGGCCATGCAGGGGATTCATGCAAGGAACCACTTGCAATCATGGCCTTTGCTGGTGATCAAGCCCAAAACATACATTACACTCCCAATTTCAATTCTTCATTTCAGAATGCTAACCTGAATTTCACGGCCAAGGCGGACAGGACACGTATAGCGTTCTATAGTATCTATTACAATACAAGAAGTGATGATATGAGCTCTCTTTGTGGACCTGTTGTGGATGATGTGAGGGTTGAACTGTCTGGGTCTAGCAGAGTCAAGGTGTTCGGGTTTGGGTTTATGTTTTGGTTGTTAGTCTTCGTTTTTTGTTAAGACGAATAGCTTTCTGTTCCACTCAACGTATATGGGGATCCAATGTAGTACTACAGCAGGGAGGTCCAGAATCGGACGCCCCAGCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708733" ref_strand="+" ref_description="SGN-E708733 [FA36CE05]">
      <seq>attctttgtcgccatggaaatagcttcaagctcaacaaaattcaaatgggtcactgcatttcttctgcttcttgcttgctctgccgctggacaagtacaagatggtccgttagttaacggtaattttgagaccccgccgtcaggtggtttctcttccggcgatggattctccgacggtccatctgaaatccccagctggaaatcaaacggcaccgtagagttagtagaatccgggcaaaaacagggtggaatgatcctcatcgtaccacaaggtagacacgcagttcggcttggaaacgacgccgagataagccaagagctcaaagtagagaaaggttccatttactcgatcactttcagcgcggctcgcacttgcgctcagctagagtcactcaacgtttcagttcctcctgcctcacagaccattgatcttcagactctgtatagtgttcagggctgggattcttacgcgtgggcctttcaggctgaagaagatgatgtgcgggtcgtttttacaaatcctggcatggaagatgaccccacttgtggacccattattgatgatattgctatcaaagcttttcgttccagataaatcaaaaggtaatgccgtagttaatggatactttgaagaaggtccatggatgtttaggaatgcttctctcggtgttcttctcccgactaacctagacgaggaaacgtcatcgctccctggttggatagttgagtcaaatcgagcagttgatacatcgatacatattcacttcacagttccagaagggaagagagcaatagaattgctttcaggaaaagaaggcattatatcgcagatgtttgaaaccnagcctaacaagccataccgattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="60058" stop="57401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59758" g_stop="59655" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59654" i_stop="58608" i_length="1047">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58607" g_stop="58107" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="603" r_length="499" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58106" i_stop="57965" i_length="142">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57964" g_stop="57701" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="867" r_length="264" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E708733" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59758" e_stop="59655"/>
          <exon e_start="58607" e_stop="58107"/>
          <exon e_start="57964" e_stop="57701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTTGTCGCCATGGAAATAGCTTCAAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTGCTTCTTGCTTGCTCTGCCGCTGGACAAGTACAAGATGGTTAGCTTTCTTCTATTCTCTTTCAATTTTTCACTTTGAGAACCTACTTTTTTTTCAACTTACCTCTGTTTGGTATGAGATCTGGTAAATAATATCTTGTATCTTCATTTTAAGCTTCAAATGTATGCTAATTTTAAGCTTTGAGACTCAAATTGGTATGAACATTTAATCACAAATAATATATTTGTAGTTATATTTTGTTATCTCTGTCTGAAACAAAATTAATTTGGTAAGTACCAGAGCAACATATTAGCAAATAAAAAAATAGTACTCACGGTATTTAAGTAAATAGTACTAATATAACATTTAGTTGTAATTAAGTATCACTAATCATTTTGTTGATGTTGATCGTCCTGAGTTGTTATTGCGACACCCTGTAAAAATCATGATTATGTTGCATTTGTATAATTCAATTTAGTTGTTTGTTTCGGTATACAAGTGGAATGACATAAAACATGAAATGTCCGTTGGAAATTACAAATAAAAAAATTATGATTATAGTATTTAATTTAAATTAATTATTTGCTATTTCATATAGTTTTCCTATCCTGATATTTGGTGCTTTTAGTTCTACTTTTTTATTATTTAAGACAATGGACGTTTAGTTTAAATCTTTTCTAAAACCTATCTTATGAAATTCACATATTCATGTCTCACTTTTAAATTCAGATAAAATCTTAGATAATTTTTTTCATATATTCTAATGTTAGGTGAATAAAATTTTAATTGCTAGCGTGATGTAATAGATATCTCATAAAATTAATATAAATACTATGCATTAATTTAGACACGTTATTTTAAAAAATCAATTCTAAAAATTAGCTCCTGATTCCATAAAATAAACAACCGAAGTGAAACAAACAATTAGGATAGGCGATACTCAGTTTTTACTGTTATTTAAGATCAATATATATATTTTTTGAAAGATTTTCGAAAGAAAATTATTGGCTGTGTGAAAGGGTTGTTAATTAAATTGCTTAGTTAAAGTGTGTGTTTCTATAATTTGTAGCACATCGTTAATTTTCAATCCAACTTTACATTTTGCAGGTCCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGTGGTTTCTCTTCCGGCGATGGATTCTCCGACGGTCCATCTGAAATCCCCAGCTGGAAATCAAACGGCACCGTAGAGTTAGTAGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATCGTACCACAAGGTAGACACGCAGTTCGGCTTGGAAACGACGCCGAGATAAGCCAAGAGCTCAAAGTAGAGAAAGGTTCCATTTACTCGATCACTTTCAGCGCGGCTCGCACTTGCGCTCAGCTAGAGTCACTCAACGTTTCAGTTCCTCCTGCCTCACAGACCATTGATCTTCAGACTCTGTATAGTGTTCAGGGCTGGGATTCTTACGCGTGGGCCTTTCAGGCTGAAGAAGATGATGTGCGGGTCGTTTTTACAAATCCTGGCATGGAAGATGACCCCACTTGTGGACCCATTATTGATGATATTGCTATCAAGAAGCTTTTCGTTCCAGATAAATCAAAAGGTAAGGTCATTTCTATTTTCCCACTTCCAGCCTGTTTTGGTCAAATATTTACTGTATTTCGTTTTAATTTATGGGATATAGTTTGATTTGAAACATACGTATAAAAGCTAGTAATTGTTATTTAATTTGGTTATTGGAACAGGTAATGCCGTAGTTAATGGAGACTTTGAAGAAGGTCCATGGATGTTTAGGAATGCTTCTCTCGGTGTTCTTCTCCCGACTAACCTAGACGAGGAAACGTCATCGCTCCCTGGTTGGATAGTTGAGTCAAATCGAGCAGTTCGATACATCGATACATA-TCACTTCACAGTTCCAGAAGGGAAGAGAGCAATAGAATTGCTTTCAGGAAAAGAAGGCATTATATCGCAGATGGTTGAAACCAAGCCTAACAAGCCATACCGATTGA</genome_strand>
        <mrna_strand>ATTCTTTGTCGCCATGGAAATAGCTTCAAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTGCTTCTTGCTTGCTCTGCCGCTGGACAAGTACAAGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGTGGTTTCTCTTCCGGCGATGGATTCTCCGACGGTCCATCTGAAATCCCCAGCTGGAAATCAAACGGCACCGTAGAGTTAGTAGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATCGTACCACAAGGTAGACACGCAGTTCGGCTTGGAAACGACGCCGAGATAAGCCAAGAGCTCAAAGTAGAGAAAGGTTCCATTTACTCGATCACTTTCAGCGCGGCTCGCACTTGCGCTCAGCTAGAGTCACTCAACGTTTCAGTTCCTCCTGCCTCACAGACCATTGATCTTCAGACTCTGTATAGTGTTCAGGGCTGGGATTCTTACGCGTGGGCCTTTCAGGCTGAAGAAGATGATGTGCGGGTCGTTTTTACAAATCCTGGCATGGAAGATGACCCCACTTGTGGACCCATTATTGATGATATTGCTATC-A-AAGCTTTTCGTTCCAGATAAATCAAAAG..............................................................................................................................................GTAATGCCGTAGTTAATGGATACTTTGAAGAAGGTCCATGGATGTTTAGGAATGCTTCTCTCGGTGTTCTTCTCCCGACTAACCTAGACGAGGAAACGTCATCGCTCCCTGGTTGGATAGTTGAGTCAAATCGAGCAGTT-GATACATCGATACATATTCACTTCACAGTTCCAGAAGGGAAGAGAGCAATAGAATTGCTTTCAGGAAAAGAAGGCATTATATCGCAGATGTTTGAAACCNAGCCTAACAAGCCATACCGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E590961" ref_strand="+" ref_description="SGN-E590961 [44568]">
      <seq>tgggaatttattctttgtcgccatggaaatagcttcgagctcaacaaaattcaaatgggtcactgcatttcttcttcttcttacttgctcagctgctggacaagttcaagatggctcgttagttaacggtaattttgagaccccgccgtcaggcggtttctcttccggcgacggattctccgacgggccatccgaaatccccagctggaaatcaaacggcacagtagaggtagtggaatccgggcaaaaacagggtggaatgatcctcatcgtaccacaaggtagacacgcagttcggcttggaaacgacgccgagataagccaagagctcaaagtagagaaaggctccatttactcaatcactttcagcgcggctcgcacgtgcgctcagctagagtcactcaacgtttcagttcctccggcctcacagaccattgatcttcaaactctgtataatgttcagggctgggattcctacgcgtgggcctttcaggctgaagaagatgacgtgcgggtcgtttttacaaatcctggcatggaagatgaccccacttgtggacccattattgatgatattgctatcaagaagcttttcgttccagctaagtcaaaaaataatgcagtacttaatggagactttgaagaaggtccatggatgtttaggaatacttctctcggtgttcttcttccaaccaacctcgacgaggaaacatcatcgctccctggttggatagttgaatcaaatcgagcagttcgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="60066" stop="57519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59767" g_stop="59655" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59654" i_stop="58608" i_length="1047">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58607" g_stop="58107" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="614" r_length="501" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58106" i_stop="57965" i_length="142">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57964" g_stop="57819" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="760" r_length="146" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E590961" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59767" e_stop="59655"/>
          <exon e_start="58607" e_stop="58107"/>
          <exon e_start="57964" e_stop="57819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCAAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTGCTTCTTGCTTGCTCTGCCGCTGGACAAGTACAAGATGGTTAGCTTTCTTCTATTCTCTTTCAATTTTTCACTTTGAGAACCTACTTTTTTTTCAACTTACCTCTGTTTGGTATGAGATCTGGTAAATAATATCTTGTATCTTCATTTTAAGCTTCAAATGTATGCTAATTTTAAGCTTTGAGACTCAAATTGGTATGAACATTTAATCACAAATAATATATTTGTAGTTATATTTTGTTATCTCTGTCTGAAACAAAATTAATTTGGTAAGTACCAGAGCAACATATTAGCAAATAAAAAAATAGTACTCACGGTATTTAAGTAAATAGTACTAATATAACATTTAGTTGTAATTAAGTATCACTAATCATTTTGTTGATGTTGATCGTCCTGAGTTGTTATTGCGACACCCTGTAAAAATCATGATTATGTTGCATTTGTATAATTCAATTTAGTTGTTTGTTTCGGTATACAAGTGGAATGACATAAAACATGAAATGTCCGTTGGAAATTACAAATAAAAAAATTATGATTATAGTATTTAATTTAAATTAATTATTTGCTATTTCATATAGTTTTCCTATCCTGATATTTGGTGCTTTTAGTTCTACTTTTTTATTATTTAAGACAATGGACGTTTAGTTTAAATCTTTTCTAAAACCTATCTTATGAAATTCACATATTCATGTCTCACTTTTAAATTCAGATAAAATCTTAGATAATTTTTTTCATATATTCTAATGTTAGGTGAATAAAATTTTAATTGCTAGCGTGATGTAATAGATATCTCATAAAATTAATATAAATACTATGCATTAATTTAGACACGTTATTTTAAAAAATCAATTCTAAAAATTAGCTCCTGATTCCATAAAATAAACAACCGAAGTGAAACAAACAATTAGGATAGGCGATACTCAGTTTTTACTGTTATTTAAGATCAATATATATATTTTTTGAAAGATTTTCGAAAGAAAATTATTGGCTGTGTGAAAGGGTTGTTAATTAAATTGCTTAGTTAAAGTGTGTGTTTCTATAATTTGTAGCACATCGTTAATTTTCAATCCAACTTTACATTTTGCAGGTCCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGTGGTTTCTCTTCCGGCGATGGATTCTCCGACGGTCCATCTGAAATCCCCAGCTGGAAATCAAACGGCACCGTAGAGTTAGTAGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATCGTACCACAAGGTAGACACGCAGTTCGGCTTGGAAACGACGCCGAGATAAGCCAAGAGCTCAAAGTAGAGAAAGGTTCCATTTACTCGATCACTTTCAGCGCGGCTCGCACTTGCGCTCAGCTAGAGTCACTCAACGTTTCAGTTCCTCCTGCCTCACAGACCATTGATCTTCAGACTCTGTATAGTGTTCAGGGCTGGGATTCTTACGCGTGGGCCTTTCAGGCTGAAGAAGATGATGTGCGGGTCGTTTTTACAAATCCTGGCATGGAAGATGACCCCACTTGTGGACCCATTATTGATGATATTGCTATCAAGAAGCTTTTCGTTCCAGATAAATCAAAAGGTAAGGTCATTTCTATTTTCCCACTTCCAGCCTGTTTTGGTCAAATATTTACTGTATTTCGTTTTAATTTATGGGATATAGTTTGATTTGAAACATACGTATAAAAGCTAGTAATTGTTATTTAATTTGGTTATTGGAACAGGTAATGCCGTAGTTAATGGAGACTTTGAAGAAGGTCCATGGATGTTTAGGAATGCTTCTCTCGGTGTTCTTCTCCCGACTAACCTAGACGAGGAAACGTCATCGCTCCCTGGTTGGATAGTTGAGTCAAATCGAGCAGTTCGATAC</genome_strand>
        <mrna_strand>TGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCGAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTTCTTCTTACTTGCTCAGCTGCTGGACAAGTTCAAGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGCGGTTTCTCTTCCGGCGACGGATTCTCCGACGGGCCATCCGAAATCCCCAGCTGGAAATCAAACGGCACAGTAGAGGTAGTGGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATCGTACCACAAGGTAGACACGCAGTTCGGCTTGGAAACGACGCCGAGATAAGCCAAGAGCTCAAAGTAGAGAAAGGCTCCATTTACTCAATCACTTTCAGCGCGGCTCGCACGTGCGCTCAGCTAGAGTCACTCAACGTTTCAGTTCCTCCGGCCTCACAGACCATTGATCTTCAAACTCTGTATAATGTTCAGGGCTGGGATTCCTACGCGTGGGCCTTTCAGGCTGAAGAAGATGACGTGCGGGTCGTTTTTACAAATCCTGGCATGGAAGATGACCCCACTTGTGGACCCATTATTGATGATATTGCTATCAAGAAGCTTTTCGTTCCAGCTAAGTCAAAAA..............................................................................................................................................ATAATGCAGTACTTAATGGAGACTTTGAAGAAGGTCCATGGATGTTTAGGAATACTTCTCTCGGTGTTCTTCTTCCAACCAACCTCGACGAGGAAACATCATCGCTCCCTGGTTGGATAGTTGAATCAAATCGAGCAGTTCGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E487963" ref_strand="+" ref_description="SGN-E487963 [cSTE-27-G19]">
      <seq>ttagaatagaaaaaaagggaatttattctttgtcgccatggaaatagcttctagctcaacaaaattcaaatgggtcactgcatttcttcttcttcttacttgctcagctgctggacaagttcaagatggctcgataattaacagaaattttgagaccccgccgacatgcgggttctcttccggcgacggattctccgacgggccatccaaaatccccagctggaaatcgaacggcacaggaaaggtagtggaatccgggcaaaaacagggaggaatgatcctcatcgtaccacaagggagacacacagatcggcttggaaacgacgccgagataaaccaagagctcagagtatagaaaggctccatttactcaatcactttcagcgcggctcgcacgtgcgctcagctaaagtcactcaacggttcaattcctccagcctcacagaccattgatcttcaaactctgtataatgttcacggctgggattcctacgcgtgggcctttcaggctgaagaagatgacgtgcgggtcggttttacaaatcctgtcatggaagatgaccccacttgtggacccattattgatgatattgctatcaagaagcttttcgttccagctaagtcaaaaaataatgcagtacttaatggagactttggacaaggtccatggatgattaggaatacttctctcggtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="60084" stop="57790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59784" g_stop="59655" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59654" i_stop="58608" i_length="1047">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58607" g_stop="58107" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="629" r_length="501" r_score="0.912"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58106" i_stop="57965" i_length="142">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57964" g_stop="57897" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="697" r_length="68" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E487963" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59784" e_stop="59655"/>
          <exon e_start="58607" e_stop="58107"/>
          <exon e_start="57964" e_stop="57897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAATAGAAAAAAAAAGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCAAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTGCTTCTTGCTTGCTCTGCCGCTGGACAAGTACAAGATGGTTAGCTTTCTTCTATTCTCTTTCAATTTTTCACTTTGAGAACCTACTTTTTTTTCAACTTACCTCTGTTTGGTATGAGATCTGGTAAATAATATCTTGTATCTTCATTTTAAGCTTCAAATGTATGCTAATTTTAAGCTTTGAGACTCAAATTGGTATGAACATTTAATCACAAATAATATATTTGTAGTTATATTTTGTTATCTCTGTCTGAAACAAAATTAATTTGGTAAGTACCAGAGCAACATATTAGCAAATAAAAAAATAGTACTCACGGTATTTAAGTAAATAGTACTAATATAACATTTAGTTGTAATTAAGTATCACTAATCATTTTGTTGATGTTGATCGTCCTGAGTTGTTATTGCGACACCCTGTAAAAATCATGATTATGTTGCATTTGTATAATTCAATTTAGTTGTTTGTTTCGGTATACAAGTGGAATGACATAAAACATGAAATGTCCGTTGGAAATTACAAATAAAAAAATTATGATTATAGTATTTAATTTAAATTAATTATTTGCTATTTCATATAGTTTTCCTATCCTGATATTTGGTGCTTTTAGTTCTACTTTTTTATTATTTAAGACAATGGACGTTTAGTTTAAATCTTTTCTAAAACCTATCTTATGAAATTCACATATTCATGTCTCACTTTTAAATTCAGATAAAATCTTAGATAATTTTTTTCATATATTCTAATGTTAGGTGAATAAAATTTTAATTGCTAGCGTGATGTAATAGATATCTCATAAAATTAATATAAATACTATGCATTAATTTAGACACGTTATTTTAAAAAATCAATTCTAAAAATTAGCTCCTGATTCCATAAAATAAACAACCGAAGTGAAACAAACAATTAGGATAGGCGATACTCAGTTTTTACTGTTATTTAAGATCAATATATATATTTTTTGAAAGATTTTCGAAAGAAAATTATTGGCTGTGTGAAAGGGTTGTTAATTAAATTGCTTAGTTAAAGTGTGTGTTTCTATAATTTGTAGCACATCGTTAATTTTCAATCCAACTTTACATTTTGCAGGTCCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGTGGTTTCTCTTCCGGCGATGGATTCTCCGACGGTCCATCTGAAATCCCCAGCTGGAAATCAAACGGCACCGTAGAGTTAGTAGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATCGTACCACAAGGTAGACACGCAGTTCGGCTTGGAAACGACGCCGAGATAAGCCAAGAGCTCAAAGTAGAGAAAGGTTCCATTTACTCGATCACTTTCAGCGCGGCTCGCACTTGCGCTCAGCTAGAGTCACTCAACGTTTCAGTTCCTCCTGCCTCACAGACCATTGATCTTCAGACTCTGTATAGTGTTCAGGGCTGGGATTCTTACGCGTGGGCCTTTCAGGCTGAAGAAGATGATGTGCGGGTCGTTTTTACAAATCCTGGCATGGAAGATGACCCCACTTGTGGACCCATTATTGATGATATTGCTATCAAGAAGCTTTTCGTTCCAGATAAATCAAAAGGTAAGGTCATTTCTATTTTCCCACTTCCAGCCTGTTTTGGTCAAATATTTACTGTATTTCGTTTTAATTTATGGGATATAGTTTGATTTGAAACATACGTATAAAAGCTAGTAATTGTTATTTAATTTGGTTATTGGAACAGGTAATGCCGTAGTTAATGGAGACTTTGAAGAAGGTCCATGGATGTTTAGGAATGCTTCTCTCGGTGTT</genome_strand>
        <mrna_strand>TTAGAATAG--AAAAAAAGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCTAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTTCTTCTTACTTGCTCAGCTGCTGGACAAGTTCAAGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGATAATTAACAGAAATTTTGAGACCCCGCCGACATGCGGGTTCTCTTCCGGCGACGGATTCTCCGACGGGCCATCCAAAATCCCCAGCTGGAAATCGAACGGCACAGGAAAGGTAGTGGAATCCGGGCAAAAACAGGGAGGAATGATCCTCATCGTACCACAAGGGAGACACACAGATCGGCTTGGAAACGACGCCGAGATAAACCAAGAGCTCAGAGTATAGAAAGGCTCCATTTACTCAATCACTTTCAGCGCGGCTCGCACGTGCGCTCAGCTAAAGTCACTCAACGGTTCAATTCCTCCAGCCTCACAGACCATTGATCTTCAAACTCTGTATAATGTTCACGGCTGGGATTCCTACGCGTGGGCCTTTCAGGCTGAAGAAGATGACGTGCGGGTCGGTTTTACAAATCCTGTCATGGAAGATGACCCCACTTGTGGACCCATTATTGATGATATTGCTATCAAGAAGCTTTTCGTTCCAGCTAAGTCAAAAA..............................................................................................................................................ATAATGCAGTACTTAATGGAGACTTTGGACAAGGTCCATGGATGATTAGGAATACTTCTCTCGGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483259" ref_strand="+" ref_description="SGN-E483259 [cSTE-8-L5]">
      <seq>agaatagaaaaaagggaatttattctttgtcgccatggaaatagcttcgagctcaacaaaattcaaatgggtcactgcatttcttcttcttcttacttgctcagctgctggacaagttcaagatggctcgttagttaacggtaattttgagaccccgccgtcaggcggtttctcttccggcgacggattctccgacgggccatccgaaatccccagctggaaatcaaacggcacagtagaggtagtggaatccgggcaaaaacagggtggaatgatcctcatcgtaccacaaggtagacacgcagttcggcttggaaacgacgccgagataagccaagagctcaaagtagagaaaggctccatttactcaatcactttcagcgcggctcgcacgtgcgctcagctagagtcactcaacgtttcagttcctccggcctcacagaccattgatcttcaaactctgtataatgttcagggctgggattcctacgcgtgggcctttcaggctgaagaagatgacgtgcgggtcgtttttacaaatcctggcatggaagatgaccccacttgtggacccattattgatgatattgctatcaagaagcttttcgttccagctaagtcaaaaaataatgcagtacttaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="60077" stop="57790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59779" g_stop="59655" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59654" i_stop="58608" i_length="1047">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58607" g_stop="58107" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="626" r_length="501" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58106" i_stop="57965" i_length="142">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57964" g_stop="57946" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="645" r_length="19" r_score="0.842"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E483259" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59779" e_stop="59655"/>
          <exon e_start="58607" e_stop="58107"/>
          <exon e_start="57964" e_stop="57946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAAAAAAAAAGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCAAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTGCTTCTTGCTTGCTCTGCCGCTGGACAAGTACAAGATGGTTAGCTTTCTTCTATTCTCTTTCAATTTTTCACTTTGAGAACCTACTTTTTTTTCAACTTACCTCTGTTTGGTATGAGATCTGGTAAATAATATCTTGTATCTTCATTTTAAGCTTCAAATGTATGCTAATTTTAAGCTTTGAGACTCAAATTGGTATGAACATTTAATCACAAATAATATATTTGTAGTTATATTTTGTTATCTCTGTCTGAAACAAAATTAATTTGGTAAGTACCAGAGCAACATATTAGCAAATAAAAAAATAGTACTCACGGTATTTAAGTAAATAGTACTAATATAACATTTAGTTGTAATTAAGTATCACTAATCATTTTGTTGATGTTGATCGTCCTGAGTTGTTATTGCGACACCCTGTAAAAATCATGATTATGTTGCATTTGTATAATTCAATTTAGTTGTTTGTTTCGGTATACAAGTGGAATGACATAAAACATGAAATGTCCGTTGGAAATTACAAATAAAAAAATTATGATTATAGTATTTAATTTAAATTAATTATTTGCTATTTCATATAGTTTTCCTATCCTGATATTTGGTGCTTTTAGTTCTACTTTTTTATTATTTAAGACAATGGACGTTTAGTTTAAATCTTTTCTAAAACCTATCTTATGAAATTCACATATTCATGTCTCACTTTTAAATTCAGATAAAATCTTAGATAATTTTTTTCATATATTCTAATGTTAGGTGAATAAAATTTTAATTGCTAGCGTGATGTAATAGATATCTCATAAAATTAATATAAATACTATGCATTAATTTAGACACGTTATTTTAAAAAATCAATTCTAAAAATTAGCTCCTGATTCCATAAAATAAACAACCGAAGTGAAACAAACAATTAGGATAGGCGATACTCAGTTTTTACTGTTATTTAAGATCAATATATATATTTTTTGAAAGATTTTCGAAAGAAAATTATTGGCTGTGTGAAAGGGTTGTTAATTAAATTGCTTAGTTAAAGTGTGTGTTTCTATAATTTGTAGCACATCGTTAATTTTCAATCCAACTTTACATTTTGCAGGTCCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGTGGTTTCTCTTCCGGCGATGGATTCTCCGACGGTCCATCTGAAATCCCCAGCTGGAAATCAAACGGCACCGTAGAGTTAGTAGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATCGTACCACAAGGTAGACACGCAGTTCGGCTTGGAAACGACGCCGAGATAAGCCAAGAGCTCAAAGTAGAGAAAGGTTCCATTTACTCGATCACTTTCAGCGCGGCTCGCACTTGCGCTCAGCTAGAGTCACTCAACGTTTCAGTTCCTCCTGCCTCACAGACCATTGATCTTCAGACTCTGTATAGTGTTCAGGGCTGGGATTCTTACGCGTGGGCCTTTCAGGCTGAAGAAGATGATGTGCGGGTCGTTTTTACAAATCCTGGCATGGAAGATGACCCCACTTGTGGACCCATTATTGATGATATTGCTATCAAGAAGCTTTTCGTTCCAGATAAATCAAAAGGTAAGGTCATTTCTATTTTCCCACTTCCAGCCTGTTTTGGTCAAATATTTACTGTATTTCGTTTTAATTTATGGGATATAGTTTGATTTGAAACATACGTATAAAAGCTAGTAATTGTTATTTAATTTGGTTATTGGAACAGGTAATGCCGTAGTTAATGG</genome_strand>
        <mrna_strand>AGAATAGAAAAAAGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCGAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTTCTTCTTACTTGCTCAGCTGCTGGACAAGTTCAAGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGCGGTTTCTCTTCCGGCGACGGATTCTCCGACGGGCCATCCGAAATCCCCAGCTGGAAATCAAACGGCACAGTAGAGGTAGTGGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATCGTACCACAAGGTAGACACGCAGTTCGGCTTGGAAACGACGCCGAGATAAGCCAAGAGCTCAAAGTAGAGAAAGGCTCCATTTACTCAATCACTTTCAGCGCGGCTCGCACGTGCGCTCAGCTAGAGTCACTCAACGTTTCAGTTCCTCCGGCCTCACAGACCATTGATCTTCAAACTCTGTATAATGTTCAGGGCTGGGATTCCTACGCGTGGGCCTTTCAGGCTGAAGAAGATGACGTGCGGGTCGTTTTTACAAATCCTGGCATGGAAGATGACCCCACTTGTGGACCCATTATTGATGATATTGCTATCAAGAAGCTTTTCGTTCCAGCTAAGTCAAAAA..............................................................................................................................................ATAATGCAGTACTTAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E568512" ref_strand="+" ref_description="SGN-E568512 [12805]">
      <seq>cctcgtgccggaatagaaaaaaagggaatttattctttgtcgccatggaaatagcttcggagctcaacaaaattcaaatgggtcactgcatttcttcttcttcttacttgctcagctgctggacaagttcaagatggctcgttagttaacggtaattttgagaccccgccgtcaggcggtttctcttccggcgacggattctccgacgggccatccgaaatccccagctggaaatcaaacggcacagtagaggtagtggaatccgggcaaaaacagggtggaatgatcctcatcgtaccacaaggtagacacgcagttcggcttggaaacgacgccgagataagccaagagctcaaagtagagaaaggctccatttactcaatcactttcagcgcggctcgcacgtgcgctcagctagagtcactcaacgtttcagttcctccggcctcacagaccattgatcttcaaactctgtataatgttcagggctgggattcctacgcgtgggcctttcaggctgaagaagatgacgtgcgggtcgtttttacaaatcctggcatggaagatgacccacttgtggacccattattgatgatattgctatcaagaagcttttcgttccagctaagtcaaaaaataatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="60081" stop="57803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59775" g_stop="59655" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="136" r_length="122" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59654" i_stop="58608" i_length="1047">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58607" g_stop="58107" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="636" r_length="500" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58106" i_stop="57965" i_length="142">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57964" g_stop="57959" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="642" r_length="6" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E568512" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59775" e_stop="59655"/>
          <exon e_start="58607" e_stop="58107"/>
          <exon e_start="57964" e_stop="57959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTC-AAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTGCTTCTTGCTTGCTCTGCCGCTGGACAAGTACAAGATGGTTAGCTTTCTTCTATTCTCTTTCAATTTTTCACTTTGAGAACCTACTTTTTTTTCAACTTACCTCTGTTTGGTATGAGATCTGGTAAATAATATCTTGTATCTTCATTTTAAGCTTCAAATGTATGCTAATTTTAAGCTTTGAGACTCAAATTGGTATGAACATTTAATCACAAATAATATATTTGTAGTTATATTTTGTTATCTCTGTCTGAAACAAAATTAATTTGGTAAGTACCAGAGCAACATATTAGCAAATAAAAAAATAGTACTCACGGTATTTAAGTAAATAGTACTAATATAACATTTAGTTGTAATTAAGTATCACTAATCATTTTGTTGATGTTGATCGTCCTGAGTTGTTATTGCGACACCCTGTAAAAATCATGATTATGTTGCATTTGTATAATTCAATTTAGTTGTTTGTTTCGGTATACAAGTGGAATGACATAAAACATGAAATGTCCGTTGGAAATTACAAATAAAAAAATTATGATTATAGTATTTAATTTAAATTAATTATTTGCTATTTCATATAGTTTTCCTATCCTGATATTTGGTGCTTTTAGTTCTACTTTTTTATTATTTAAGACAATGGACGTTTAGTTTAAATCTTTTCTAAAACCTATCTTATGAAATTCACATATTCATGTCTCACTTTTAAATTCAGATAAAATCTTAGATAATTTTTTTCATATATTCTAATGTTAGGTGAATAAAATTTTAATTGCTAGCGTGATGTAATAGATATCTCATAAAATTAATATAAATACTATGCATTAATTTAGACACGTTATTTTAAAAAATCAATTCTAAAAATTAGCTCCTGATTCCATAAAATAAACAACCGAAGTGAAACAAACAATTAGGATAGGCGATACTCAGTTTTTACTGTTATTTAAGATCAATATATATATTTTTTGAAAGATTTTCGAAAGAAAATTATTGGCTGTGTGAAAGGGTTGTTAATTAAATTGCTTAGTTAAAGTGTGTGTTTCTATAATTTGTAGCACATCGTTAATTTTCAATCCAACTTTACATTTTGCAGGTCCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGTGGTTTCTCTTCCGGCGATGGATTCTCCGACGGTCCATCTGAAATCCCCAGCTGGAAATCAAACGGCACCGTAGAGTTAGTAGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATCGTACCACAAGGTAGACACGCAGTTCGGCTTGGAAACGACGCCGAGATAAGCCAAGAGCTCAAAGTAGAGAAAGGTTCCATTTACTCGATCACTTTCAGCGCGGCTCGCACTTGCGCTCAGCTAGAGTCACTCAACGTTTCAGTTCCTCCTGCCTCACAGACCATTGATCTTCAGACTCTGTATAGTGTTCAGGGCTGGGATTCTTACGCGTGGGCCTTTCAGGCTGAAGAAGATGATGTGCGGGTCGTTTTTACAAATCCTGGCATGGAAGATGACCCCACTTGTGGACCCATTATTGATGATATTGCTATCAAGAAGCTTTTCGTTCCAGATAAATCAAAAGGTAAGGTCATTTCTATTTTCCCACTTCCAGCCTGTTTTGGTCAAATATTTACTGTATTTCGTTTTAATTTATGGGATATAGTTTGATTTGAAACATACGTATAAAAGCTAGTAATTGTTATTTAATTTGGTTATTGGAACAGGTAATG</genome_strand>
        <mrna_strand>AGAAAAAAAGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCGGAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTTCTTCTTACTTGCTCAGCTGCTGGACAAGTTCAAGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGCGGTTTCTCTTCCGGCGACGGATTCTCCGACGGGCCATCCGAAATCCCCAGCTGGAAATCAAACGGCACAGTAGAGGTAGTGGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATCGTACCACAAGGTAGACACGCAGTTCGGCTTGGAAACGACGCCGAGATAAGCCAAGAGCTCAAAGTAGAGAAAGGCTCCATTTACTCAATCACTTTCAGCGCGGCTCGCACGTGCGCTCAGCTAGAGTCACTCAACGTTTCAGTTCCTCCGGCCTCACAGACCATTGATCTTCAAACTCTGTATAATGTTCAGGGCTGGGATTCCTACGCGTGGGCCTTTCAGGCTGAAGAAGATGACGTGCGGGTCGTTTTTACAAATCCTGGCATGGAAGATGA-CCCACTTGTGGACCCATTATTGATGATATTGCTATCAAGAAGCTTTTCGTTCCAGCTAAGTCAAAAA..............................................................................................................................................ATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318670" ref_strand="+" ref_description="SGN-E318670 [cTOB-9-G19]">
      <seq>aatagaaaaaaaaagggaatttattctttgtcgccatggaaatagcttcaagctcaacaaaattcaaatgggtcactgcatttcttctgcttcttgcttgctctgccgctggacaagtacaagatggtccgttagttaacggtaattttgagaccccgccgtcaggtggtttctcttccggcgatggattctccgacggtccatctgaaatccccagctggaaatcaaacggcaccgtagagttagtagaatccgggcaaaaacagggtggaatgatcctcattgtaccacacggtagacacgcagtccggcttggaaacgacgccgagataagccaagagctcaaagtagagaaaggttccatttactcgatcactttcagcgcggctcgcacttgcgctcagctagagtcactcaacgtttcagttcctcctgcctcacagaccattgatcttcagactctgtatagtgttcagggctgggattcttacgcgtgggcctttcaggctgaagaagatgatgtgcgggtcgtttttacaaatcctggcatggaagatgaccccacttgtggacccattattgatgatattgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="60080" stop="57840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59780" g_stop="59655" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59654" i_stop="58608" i_length="1047">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58607" g_stop="58140" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="594" r_length="468" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E318670" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59780" e_stop="59655"/>
          <exon e_start="58607" e_stop="58140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGAAAAAAAAAGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCAAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTGCTTCTTGCTTGCTCTGCCGCTGGACAAGTACAAGATGGTTAGCTTTCTTCTATTCTCTTTCAATTTTTCACTTTGAGAACCTACTTTTTTTTCAACTTACCTCTGTTTGGTATGAGATCTGGTAAATAATATCTTGTATCTTCATTTTAAGCTTCAAATGTATGCTAATTTTAAGCTTTGAGACTCAAATTGGTATGAACATTTAATCACAAATAATATATTTGTAGTTATATTTTGTTATCTCTGTCTGAAACAAAATTAATTTGGTAAGTACCAGAGCAACATATTAGCAAATAAAAAAATAGTACTCACGGTATTTAAGTAAATAGTACTAATATAACATTTAGTTGTAATTAAGTATCACTAATCATTTTGTTGATGTTGATCGTCCTGAGTTGTTATTGCGACACCCTGTAAAAATCATGATTATGTTGCATTTGTATAATTCAATTTAGTTGTTTGTTTCGGTATACAAGTGGAATGACATAAAACATGAAATGTCCGTTGGAAATTACAAATAAAAAAATTATGATTATAGTATTTAATTTAAATTAATTATTTGCTATTTCATATAGTTTTCCTATCCTGATATTTGGTGCTTTTAGTTCTACTTTTTTATTATTTAAGACAATGGACGTTTAGTTTAAATCTTTTCTAAAACCTATCTTATGAAATTCACATATTCATGTCTCACTTTTAAATTCAGATAAAATCTTAGATAATTTTTTTCATATATTCTAATGTTAGGTGAATAAAATTTTAATTGCTAGCGTGATGTAATAGATATCTCATAAAATTAATATAAATACTATGCATTAATTTAGACACGTTATTTTAAAAAATCAATTCTAAAAATTAGCTCCTGATTCCATAAAATAAACAACCGAAGTGAAACAAACAATTAGGATAGGCGATACTCAGTTTTTACTGTTATTTAAGATCAATATATATATTTTTTGAAAGATTTTCGAAAGAAAATTATTGGCTGTGTGAAAGGGTTGTTAATTAAATTGCTTAGTTAAAGTGTGTGTTTCTATAATTTGTAGCACATCGTTAATTTTCAATCCAACTTTACATTTTGCAGGTCCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGTGGTTTCTCTTCCGGCGATGGATTCTCCGACGGTCCATCTGAAATCCCCAGCTGGAAATCAAACGGCACCGTAGAGTTAGTAGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATCGTACCACAAGGTAGACACGCAGTTCGGCTTGGAAACGACGCCGAGATAAGCCAAGAGCTCAAAGTAGAGAAAGGTTCCATTTACTCGATCACTTTCAGCGCGGCTCGCACTTGCGCTCAGCTAGAGTCACTCAACGTTTCAGTTCCTCCTGCCTCACAGACCATTGATCTTCAGACTCTGTATAGTGTTCAGGGCTGGGATTCTTACGCGTGGGCCTTTCAGGCTGAAGAAGATGATGTGCGGGTCGTTTTTACAAATCCTGGCATGGAAGATGACCCCACTTGTGGACCCATTATTGATGATATTGCTA</genome_strand>
        <mrna_strand>AATAGAAAAAAAAAGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCAAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTGCTTCTTGCTTGCTCTGCCGCTGGACAAGTACAAGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGTGGTTTCTCTTCCGGCGATGGATTCTCCGACGGTCCATCTGAAATCCCCAGCTGGAAATCAAACGGCACCGTAGAGTTAGTAGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATTGTACCACACGGTAGACACGCAGTCCGGCTTGGAAACGACGCCGAGATAAGCCAAGAGCTCAAAGTAGAGAAAGGTTCCATTTACTCGATCACTTTCAGCGCGGCTCGCACTTGCGCTCAGCTAGAGTCACTCAACGTTTCAGTTCCTCCTGCCTCACAGACCATTGATCTTCAGACTCTGTATAGTGTTCAGGGCTGGGATTCTTACGCGTGGGCCTTTCAGGCTGAAGAAGATGATGTGCGGGTCGTTTTTACAAATCCTGGCATGGAAGATGACCCCACTTGTGGACCCATTATTGATGATATTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446910" ref_strand="+" ref_description="SGN-E446910 [cSTA-23-B3]">
      <seq>ttagaatagaaaaaaagggaatttattctttgtcgccatggaaatagcttcgagctcaacaaaattcaaatgggtcactgcatttcttcttcttcttacttgctcagctgctggacaagttcaagatggctcgttagttaacggtaattttgagaccccgccgtcaggcggtttctcttccggcgacggattctccgacgggccatccgaaatccccagctggaaatcaaacggcacagtagaggtagtggaatccgggcaaaaacagggtggaatgatcctcatcgtaccacaaggtagacacgcagttcggcttggaaacgacgccgagataagccaagagctcaaagtagagaaaggctccatttactcaatcactttcagcgcggctcgcacgtgcgctcagctagagtcactcaacgtttcagttcctccggcctcacagaccattgatcttcaaactctgtataatgttcagggctgggattcctacgcgtgggcctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="60084" stop="57930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59784" g_stop="59655" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59654" i_stop="58608" i_length="1047">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58607" g_stop="58230" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="506" r_length="378" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E446910" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59784" e_stop="59655"/>
          <exon e_start="58607" e_stop="58230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAATAGAAAAAAAAAGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCAAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTGCTTCTTGCTTGCTCTGCCGCTGGACAAGTACAAGATGGTTAGCTTTCTTCTATTCTCTTTCAATTTTTCACTTTGAGAACCTACTTTTTTTTCAACTTACCTCTGTTTGGTATGAGATCTGGTAAATAATATCTTGTATCTTCATTTTAAGCTTCAAATGTATGCTAATTTTAAGCTTTGAGACTCAAATTGGTATGAACATTTAATCACAAATAATATATTTGTAGTTATATTTTGTTATCTCTGTCTGAAACAAAATTAATTTGGTAAGTACCAGAGCAACATATTAGCAAATAAAAAAATAGTACTCACGGTATTTAAGTAAATAGTACTAATATAACATTTAGTTGTAATTAAGTATCACTAATCATTTTGTTGATGTTGATCGTCCTGAGTTGTTATTGCGACACCCTGTAAAAATCATGATTATGTTGCATTTGTATAATTCAATTTAGTTGTTTGTTTCGGTATACAAGTGGAATGACATAAAACATGAAATGTCCGTTGGAAATTACAAATAAAAAAATTATGATTATAGTATTTAATTTAAATTAATTATTTGCTATTTCATATAGTTTTCCTATCCTGATATTTGGTGCTTTTAGTTCTACTTTTTTATTATTTAAGACAATGGACGTTTAGTTTAAATCTTTTCTAAAACCTATCTTATGAAATTCACATATTCATGTCTCACTTTTAAATTCAGATAAAATCTTAGATAATTTTTTTCATATATTCTAATGTTAGGTGAATAAAATTTTAATTGCTAGCGTGATGTAATAGATATCTCATAAAATTAATATAAATACTATGCATTAATTTAGACACGTTATTTTAAAAAATCAATTCTAAAAATTAGCTCCTGATTCCATAAAATAAACAACCGAAGTGAAACAAACAATTAGGATAGGCGATACTCAGTTTTTACTGTTATTTAAGATCAATATATATATTTTTTGAAAGATTTTCGAAAGAAAATTATTGGCTGTGTGAAAGGGTTGTTAATTAAATTGCTTAGTTAAAGTGTGTGTTTCTATAATTTGTAGCACATCGTTAATTTTCAATCCAACTTTACATTTTGCAGGTCCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGTGGTTTCTCTTCCGGCGATGGATTCTCCGACGGTCCATCTGAAATCCCCAGCTGGAAATCAAACGGCACCGTAGAGTTAGTAGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATCGTACCACAAGGTAGACACGCAGTTCGGCTTGGAAACGACGCCGAGATAAGCCAAGAGCTCAAAGTAGAGAAAGGTTCCATTTACTCGATCACTTTCAGCGCGGCTCGCACTTGCGCTCAGCTAGAGTCACTCAACGTTTCAGTTCCTCCTGCCTCACAGACCATTGATCTTCAGACTCTGTATAGTGTTCAGGGCTGGGATTCTTACGCGTGGGCCTTTC</genome_strand>
        <mrna_strand>TTAGAATAG--AAAAAAAGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCGAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTTCTTCTTACTTGCTCAGCTGCTGGACAAGTTCAAGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGCGGTTTCTCTTCCGGCGACGGATTCTCCGACGGGCCATCCGAAATCCCCAGCTGGAAATCAAACGGCACAGTAGAGGTAGTGGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATCGTACCACAAGGTAGACACGCAGTTCGGCTTGGAAACGACGCCGAGATAAGCCAAGAGCTCAAAGTAGAGAAAGGCTCCATTTACTCAATCACTTTCAGCGCGGCTCGCACGTGCGCTCAGCTAGAGTCACTCAACGTTTCAGTTCCTCCGGCCTCACAGACCATTGATCTTCAAACTCTGTATAATGTTCAGGGCTGGGATTCCTACGCGTGGGCCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290199" ref_strand="+" ref_description="SGN-E290199 [cLET-5-C4]">
      <seq>tagaatagaaaaaaaaagggaatttattctttgtcgccatggaaatagcttcaagctcaacaaaattcaaatgggtcactgcatttcttctgcttcttgcttgctctgccgctggacaagtacaagatggtccgttagttaacggtaattttgagaccccgccgtcaggtggtttctcttccggcgatggattctccgacggtccatctgaaatccccagctggaaatcaaacggcaccgtagagttagtagaatccgggcaaaaacagggtggaatgatcctcattgtaccacaaggtagacacgcagtccggcttggaaacgacgccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="60083" stop="58106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59783" g_stop="59655" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59654" i_stop="58608" i_length="1047">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58607" g_stop="58406" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="331" r_length="202" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E290199" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59783" e_stop="59655"/>
          <exon e_start="58607" e_stop="58406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAATAGAAAAAAAAAGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCAAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTGCTTCTTGCTTGCTCTGCCGCTGGACAAGTACAAGATGGTTAGCTTTCTTCTATTCTCTTTCAATTTTTCACTTTGAGAACCTACTTTTTTTTCAACTTACCTCTGTTTGGTATGAGATCTGGTAAATAATATCTTGTATCTTCATTTTAAGCTTCAAATGTATGCTAATTTTAAGCTTTGAGACTCAAATTGGTATGAACATTTAATCACAAATAATATATTTGTAGTTATATTTTGTTATCTCTGTCTGAAACAAAATTAATTTGGTAAGTACCAGAGCAACATATTAGCAAATAAAAAAATAGTACTCACGGTATTTAAGTAAATAGTACTAATATAACATTTAGTTGTAATTAAGTATCACTAATCATTTTGTTGATGTTGATCGTCCTGAGTTGTTATTGCGACACCCTGTAAAAATCATGATTATGTTGCATTTGTATAATTCAATTTAGTTGTTTGTTTCGGTATACAAGTGGAATGACATAAAACATGAAATGTCCGTTGGAAATTACAAATAAAAAAATTATGATTATAGTATTTAATTTAAATTAATTATTTGCTATTTCATATAGTTTTCCTATCCTGATATTTGGTGCTTTTAGTTCTACTTTTTTATTATTTAAGACAATGGACGTTTAGTTTAAATCTTTTCTAAAACCTATCTTATGAAATTCACATATTCATGTCTCACTTTTAAATTCAGATAAAATCTTAGATAATTTTTTTCATATATTCTAATGTTAGGTGAATAAAATTTTAATTGCTAGCGTGATGTAATAGATATCTCATAAAATTAATATAAATACTATGCATTAATTTAGACACGTTATTTTAAAAAATCAATTCTAAAAATTAGCTCCTGATTCCATAAAATAAACAACCGAAGTGAAACAAACAATTAGGATAGGCGATACTCAGTTTTTACTGTTATTTAAGATCAATATATATATTTTTTGAAAGATTTTCGAAAGAAAATTATTGGCTGTGTGAAAGGGTTGTTAATTAAATTGCTTAGTTAAAGTGTGTGTTTCTATAATTTGTAGCACATCGTTAATTTTCAATCCAACTTTACATTTTGCAGGTCCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGTGGTTTCTCTTCCGGCGATGGATTCTCCGACGGTCCATCTGAAATCCCCAGCTGGAAATCAAACGGCACCGTAGAGTTAGTAGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATCGTACCACAAGGTAGACACGCAGTTCGGCTTGGAAACGACGCCGA</genome_strand>
        <mrna_strand>TAGAATAGAAAAAAAAAGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCAAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTGCTTCTTGCTTGCTCTGCCGCTGGACAAGTACAAGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGTGGTTTCTCTTCCGGCGATGGATTCTCCGACGGTCCATCTGAAATCCCCAGCTGGAAATCAAACGGCACCGTAGAGTTAGTAGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATTGTACCACAAGGTAGACACGCAGTCCGGCTTGGAAACGACGCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E438482" ref_strand="+" ref_description="SGN-E438482 [cSTA-8-M1]">
      <seq>aaaaagggaatttattctttgtcgccatggaaatagcttcgagctcaacaaaattcaaatgggtcactgcatttcttcttcttcttacttgctcagctgctggacaagttcaagatggctcgttagttaacggtaattttgagaccccgccgtcaggcggtttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="60071" stop="58258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59771" g_stop="59655" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59654" i_stop="58608" i_length="1047">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58607" g_stop="58558" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="167" r_length="50" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E438482" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59771" e_stop="59655"/>
          <exon e_start="58607" e_stop="58558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCAAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTGCTTCTTGCTTGCTCTGCCGCTGGACAAGTACAAGATGGTTAGCTTTCTTCTATTCTCTTTCAATTTTTCACTTTGAGAACCTACTTTTTTTTCAACTTACCTCTGTTTGGTATGAGATCTGGTAAATAATATCTTGTATCTTCATTTTAAGCTTCAAATGTATGCTAATTTTAAGCTTTGAGACTCAAATTGGTATGAACATTTAATCACAAATAATATATTTGTAGTTATATTTTGTTATCTCTGTCTGAAACAAAATTAATTTGGTAAGTACCAGAGCAACATATTAGCAAATAAAAAAATAGTACTCACGGTATTTAAGTAAATAGTACTAATATAACATTTAGTTGTAATTAAGTATCACTAATCATTTTGTTGATGTTGATCGTCCTGAGTTGTTATTGCGACACCCTGTAAAAATCATGATTATGTTGCATTTGTATAATTCAATTTAGTTGTTTGTTTCGGTATACAAGTGGAATGACATAAAACATGAAATGTCCGTTGGAAATTACAAATAAAAAAATTATGATTATAGTATTTAATTTAAATTAATTATTTGCTATTTCATATAGTTTTCCTATCCTGATATTTGGTGCTTTTAGTTCTACTTTTTTATTATTTAAGACAATGGACGTTTAGTTTAAATCTTTTCTAAAACCTATCTTATGAAATTCACATATTCATGTCTCACTTTTAAATTCAGATAAAATCTTAGATAATTTTTTTCATATATTCTAATGTTAGGTGAATAAAATTTTAATTGCTAGCGTGATGTAATAGATATCTCATAAAATTAATATAAATACTATGCATTAATTTAGACACGTTATTTTAAAAAATCAATTCTAAAAATTAGCTCCTGATTCCATAAAATAAACAACCGAAGTGAAACAAACAATTAGGATAGGCGATACTCAGTTTTTACTGTTATTTAAGATCAATATATATATTTTTTGAAAGATTTTCGAAAGAAAATTATTGGCTGTGTGAAAGGGTTGTTAATTAAATTGCTTAGTTAAAGTGTGTGTTTCTATAATTTGTAGCACATCGTTAATTTTCAATCCAACTTTACATTTTGCAGGTCCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGTGGTTTCTCT</genome_strand>
        <mrna_strand>AAAAAGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCGAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTTCTTCTTACTTGCTCAGCTGCTGGACAAGTTCAAGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGCGGTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="64744" stop="63666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64444" g_stop="63966" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64444" e_stop="63966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAAATTTAGAGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACTGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATATTAATATACTCAATCTAATGAACATGGTTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAATTTGACGGTAATTGTTAATGATATAGTGCTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTG-TTTGTACTGACCCCCTACTTTTATGTTTTCTTCTTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCGTCTTCAACTCAACAGTAATTCTAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGA-CCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACT-ACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="+" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="63819" stop="64699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64119" g_stop="64431" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="+" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64119" e_stop="64431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCAAATTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAACCATGTTCATTAGATTGAGTATATTAATATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCAGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCTCTAAATTTAC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="64745" stop="63910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64445" g_stop="64208" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64445" e_stop="64208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAAATTTAGAGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACTGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATATTAATATACTCAATCTAATGAACATGGTTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAATTTGACGGTAATTGTTAATGATATAGTGCTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349726" ref_strand="+" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacacgtagatttaggggatcagagtatcacgtaccgacacaagaagattaatgaatatganggagcggaatgtcacgtaccgacacaagagaaataaagacaatgaatcttgaaagatgttatatactcaatctaatgaacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="65378" stop="63992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65079" g_stop="64642" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64641" i_stop="64572" i_length="70">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64571" g_stop="64290" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="717" r_length="282" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E349726" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65079" e_stop="64642"/>
          <exon e_start="64571" e_stop="64290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATAATATGTATTGATAATATTGTAAACCCTGCTATGTGTTTAATTGTATGCTTGCATGAATGTAATTATATAATTATGATTATATAAGCATGACAAAATTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTAATAATGAGACCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGATATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGTGTTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCATGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAATCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGAGATCGG-GTGTCACGAACCGACACGTAAATTTAGAGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACTGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATATTAATATACTCAATCTAATGAACATGG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACATAG-ATTAGGGGATCGGGTGTCACGAACCGACAC......................................................................GTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACACGTAGATTTAGGGGATCAGAGTATCACGTACCGACACAAGAAGATTAATGAATATGANGGAGCGGAATGTCACGTACCGACACAAGAGAAATAAAGACAATGAATCTTGAAAGATGTT-ATATACTCAATCTAATGAACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0104N06-O8evc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0104N06.1" temp_strand="-" temp_description="C02SLe0104N06.1  AC215463.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0104N06 sequenced_by:kribb upload_account_name:korea">
        <position start="65378" stop="64377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65079" g_stop="64676" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0104N06.1" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0104N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65079" e_stop="64676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATAATATGTATTGATAATATTGTAAACCCTGCTATGTGTTTAATTGTATGCTTGCATGAATGTAATTATATAATTATGATTATATAAGCATGACAAAATTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTAATAATGAGACCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGATATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>229</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2363" PGL_stop="258"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2363" e_stop="2238"/>
            <exon e_start="2153" e_stop="1965"/>
            <exon e_start="1461" e_stop="1401"/>
            <exon e_start="857" e_stop="656"/>
            <exon e_start="507" e_stop="386"/>
            <exon e_start="281" e_stop="258"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.865"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.460" acc_prob="0.728" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.865">
            <gDNA_exon_boundary e_start="2363" e_stop="2238" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2237" i_stop="2154" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2153" e_stop="1965" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="1964" i_stop="1462" i_length="503"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1461" e_stop="1401" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1400" i_stop="858" i_length="543"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="857" e_stop="656" e_length="202"/>
          </exon>
          <intron i_serial="4" don_prob="0.460" acc_prob="0.728">
            <gDNA_intron_boundary i_start="655" i_stop="508" i_length="148"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="507" e_stop="386" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="385" i_stop="282" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="281" e_stop="258" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2363" stop="2238"/>
              <exon start="2153" stop="1965"/>
              <exon start="1461" stop="1401"/>
              <exon start="857" stop="712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2294" stop="2238"/>
              <exon start="2153" stop="1965"/>
              <exon start="1461" stop="1401"/>
              <exon start="857" stop="656"/>
              <exon start="507" stop="386"/>
              <exon start="281" stop="258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2294" stop="2238"/>
              <exon start="2153" stop="1965"/>
              <exon start="1461" stop="1401"/>
              <exon start="857" stop="801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2293" stop="2238"/>
              <exon start="2153" stop="1965"/>
              <exon start="1461" stop="1401"/>
              <exon start="857" stop="806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2123" stop="1965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266426" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTATCTCCCCTGTACCCTTGAGATACCCTCTGTGACTGAGAATCTCCACTCAAATGGCTTCTTCAGACCACCATATGAATGACCACCACCACCATCATCATCATGACCATGACCATAACCATGA : GGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGG : GAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCA : GTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAG : ACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTT : GTGATAAATAAGACCGACTTGGCA</gDNA_template>
            <first_frame> F  Y  L  P  C  T  L  E  I  P  S  V  T  E  N  L  H  S  N  G  F  F  R  P  P  Y  E  *  P  P  P  P  S  S  S  *  P  *  P  *  P  *  :  G  H  K  S  D  I  M  G  R  S  R  W  E  S  I  P  *  S  *  W  V  G  S  S  L  S  *  T  Y  L  F  T  W  L  L  *  Q  K  G  T  S  T  *  *  Q  E  F  Q  *  K  S  L  Y  Y  W  N  W  W  P  C  W  Y  W  :  E  N  S  S  N  A  G  I  M  *  N  L  E  G  K  I  Q  S  C  S   : S  N  K  *  Y  I  H  E  R  R  W  R  V  L  N  K  T  W  C  I  A  G  G  K  D  S  S  S  G  D  R  R  M  P  T  C  C  Y  *  G  R  Y  K  H  *  P  W  T  S  *  G  A  F  *  F  V  Q  S  R  Y  T  T  L  *  I  W  W  R :   Q  P  S  C  Q  L  Q  *  G  T  C  *  L  H  N  L  H  N  R  C  I  C  G  *  Q  N  S  S  K  R  R  S  R  N  Y  T  S  R  S  P   : C  D  K  *  D  R  L  G  </first_frame>
            <second_frame>  F  I  S  P  V  P  L  R  Y  P  L  *  L  R  I  S  T  Q  M  A  S  S  D  H  H  M  N  D  H  H  H  H  H  H  H  D  H  D  H  N  H  E :   D  T  K  A  T  S  W  V  G  A  D  G  K  V  Y  H  S  H  D  G  L  A  P  H  S  H  E  P  I  Y  S  P  G  Y  F  S  R  R  A  P  P  L  N  D  R  N  F  S  E  R  A  F  T  I  G  I  G  G  P  V  G  T  G :   K  T  A  L  M  L  A  L  C  K  I  L  R  E  K  Y  S  L  A  A  :  V  T  N  D  I  F  T  K  E  D  G  E  F  L  I  K  H  G  A  L  P  E  E  R  I  R  A  V  E  T  G  G  C  P  H  A  A  I  R  E  D  I  S  I  N  L  G  P  L  E  E  L  S  N  L  Y  K  A  D  I  L  L  C  E  S  G  G   : D  N  L  A  A  N  F  S  R  E  L  A  D  Y  I  I  Y  I  I  D  V  S  A  G  D  K  I  P  R  K  G  G  P  G  I  T  Q  A  D  L  L  :  V  I  N  K  T  D  L  A </second_frame>
            <third_frame>   L  S  P  L  Y  P  *  D  T  L  C  D  *  E  S  P  L  K  W  L  L  Q  T  T  I  *  M  T  T  T  T  I  I  I  M  T  M  T  I  T  M   : R  T  Q  K  R  H  H  G  *  E  Q  M  G  K  Y  T  I  V  M  M  G  W  L  L  T  L  M  N  L  F  I  H  L  A  T  L  A  E  G  H  L  H  L  M  T  G  I  S  V  K  E  P  L  L  L  E  L  V  A  L  L  V  L   : G  K  Q  L  *  C  W  H  Y  V  K  S  *  G  K  N  T  V  L  Q  Q :   *  Q  M  I  Y  S  R  K  K  M  E  S  S  *  *  N  M  V  H  C  R  R  K  G  F  E  Q  W  R  Q  E  D  A  H  M  L  L  L  G  K  I  *  A  L  T  L  D  L  L  R  S  F  L  I  C  T  K  Q  I  Y  Y  S  V  N  L  V  E  :  T  T  *  L  P  T  S  V  G  N  L  L  T  T  *  S  T  *  *  M  Y  L  R  V  T  K  F  L  E  K  E  V  P  E  L  H  K  Q  I  S  L :   *  *  I  R  P  T  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0104N06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2326" stop="2238"/>
                    <exon start="2153" stop="1965"/>
                    <exon start="1461" stop="1401"/>
                    <exon start="857" stop="656"/>
                    <exon start="507" stop="386"/>
                    <exon start="281" stop="258"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRISTQMASSDHHMNDHHHHHHHDHDHNHEDTKATSWVGADGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLNDRNFSERAFTIGIGGPVGTGKTALMLALCKILREKYSLAAVTNDIFTKEDGEFLIKHGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLYKADILLCESGGDNLAANFSRELADYIIYIIDVSAGDKIPRKGGPGITQADLLVINKTDLA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="7994" PGL_stop="5361"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7994" e_stop="7990"/>
            <exon e_start="7681" e_stop="7517"/>
            <exon e_start="6950" e_stop="6802"/>
            <exon e_start="5803" e_stop="5361"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="0.988"/>
          <exon-intron don_prob="0.940" acc_prob="0.923" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7994" e_stop="7990" e_length="5"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.000">
            <gDNA_intron_boundary i_start="7989" i_stop="7682" i_length="308"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="7681" e_stop="7517" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="7516" i_stop="6951" i_length="566"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6950" e_stop="6802" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="0.923">
            <gDNA_intron_boundary i_start="6801" i_stop="5804" i_length="998"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5803" e_stop="5361" e_length="443"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7994" stop="7990"/>
              <exon start="7681" stop="7517"/>
              <exon start="6950" stop="6802"/>
              <exon start="5803" stop="5361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAAG : GTGAATTCTCATAGGATATTTGATATTGAAATTCATGGAATATTATTATGGGCTTCAATGGGATTCTTGATGCCAGCTGGAATACTCACAATAAGATTCTCCAATACAGAAGAGTGTAGCACAACAAAACTCAAAATTCTCTTCTATGTTCATGGAACTCTTCAG : GTACTCTCTGTGGTGTTGGCTACTGCTGGAGCTGTGCTATCAATAAAGAGCTTTGAAAATTTGTTCAACAATACTCACCAAAGAATAGGCTTAGCACTTTATATTGCCGTCTATGTCCAATTTTTTATGGGATTTCGAAGGCCTATGAG : GGGAAGTAAAGGAAGAAGTGTGTGGTACTTTTTCCATTGGCTACTTGGAACAACAATATGTTTGGCAGGAATTATCAACACTTACACAGGCTTAAATGCTTACAATCAAAGAACATCAAAGCCAATAAGCCTTTGGACAATAATTTTTACAGCTCAAATATCATTCATGGGATTATTCTATCTTTTCCAAGACAAATGGGAATATATACAAAAGCAAGGGGTCATTCTTAACAACAATGAAACTACAACACCTCAAGTGGAAATAGTTGTTCCTCAAAATGATGAACAAAAGATGATAATGAGAACTGAGTCAGGAAGGAAAAGCAATGCACTTGGTACTTTCTTTTCTAGACATAATGTCCTAAACAAATTATTTCAACAAACTTGAAATGTTTTCATGTTTCTTGTAAATTACTAGTTTCTCGATACGCATGTGTATTTTG</gDNA_template>
            <first_frame> L  R :   *  I  L  I  G  Y  L  I  L  K  F  M  E  Y  Y  Y  G  L  Q  W  D  S  *  C  Q  L  E  Y  S  Q  *  D  S  P  I  Q  K  S  V  A  Q  Q  N  S  K  F  S  S  M  F  M  E  L  F  R :   Y  S  L  W  C  W  L  L  L  E  L  C  Y  Q  *  R  A  L  K  I  C  S  T  I  L  T  K  E  *  A  *  H  F  I  L  P  S  M  S  N  F  L  W  D  F  E  G  L  *   : G  E  V  K  E  E  V  C  G  T  F  S  I  G  Y  L  E  Q  Q  Y  V  W  Q  E  L  S  T  L  T  Q  A  *  M  L  T  I  K  E  H  Q  S  Q  *  A  F  G  Q  *  F  L  Q  L  K  Y  H  S  W  D  Y  S  I  F  S  K  T  N  G  N  I  Y  K  S  K  G  S  F  L  T  T  M  K  L  Q  H  L  K  W  K  *  L  F  L  K  M  M  N  K  R  *  *  *  E  L  S  Q  E  G  K  A  M  H  L  V  L  S  F  L  D  I  M  S  *  T  N  Y  F  N  K  L  E  M  F  S  C  F  L  *  I  T  S  F  S  I  R  M  C  I  L </first_frame>
            <second_frame>  *   : G  E  F  S  *  D  I  *  Y  *  N  S  W  N  I  I  M  G  F  N  G  I  L  D  A  S  W  N  T  H  N  K  I  L  Q  Y  R  R  V  *  H  N  K  T  Q  N  S  L  L  C  S  W  N  S  S   : G  T  L  C  G  V  G  Y  C  W  S  C  A  I  N  K  E  L  *  K  F  V  Q  Q  Y  S  P  K  N  R  L  S  T  L  Y  C  R  L  C  P  I  F  Y  G  I  S  K  A  Y  E  :  G  K  *  R  K  K  C  V  V  L  F  P  L  A  T  W  N  N  N  M  F  G  R  N  Y  Q  H  L  H  R  L  K  C  L  Q  S  K  N  I  K  A  N  K  P  L  D  N  N  F  Y  S  S  N  I  I  H  G  I  I  L  S  F  P  R  Q  M  G  I  Y  T  K  A  R  G  H  S  *  Q  Q  *  N  Y  N  T  S  S  G  N  S  C  S  S  K  *  *  T  K  D  D  N  E  N  *  V  R  K  E  K  Q  C  T  W  Y  F  L  F  *  T  *  C  P  K  Q  I  I  S  T  N  L  K  C  F  H  V  S  C  K  L  L  V  S  R  Y  A  C  V  F   </second_frame>
            <third_frame>   K  :  V  N  S  H  R  I  F  D  I  E  I  H  G  I  L  L  W  A  S  M  G  F  L  M  P  A  G  I  L  T  I  R  F  S  N  T  E  E  C  S  T  T  K  L  K  I  L  F  Y  V  H  G  T  L  Q  :  V  L  S  V  V  L  A  T  A  G  A  V  L  S  I  K  S  F  E  N  L  F  N  N  T  H  Q  R  I  G  L  A  L  Y  I  A  V  Y  V  Q  F  F  M  G  F  R  R  P  M  R :   G  S  K  G  R  S  V  W  Y  F  F  H  W  L  L  G  T  T  I  C  L  A  G  I  I  N  T  Y  T  G  L  N  A  Y  N  Q  R  T  S  K  P  I  S  L  W  T  I  I  F  T  A  Q  I  S  F  M  G  L  F  Y  L  F  Q  D  K  W  E  Y  I  Q  K  Q  G  V  I  L  N  N  N  E  T  T  T  P  Q  V  E  I  V  V  P  Q  N  D  E  Q  K  M  I  M  R  T  E  S  G  R  K  S  N  A  L  G  T  F  F  S  R  H  N  V  L  N  K  L  F  Q  Q  T  *  N  V  F  M  F  L  V  N  Y  *  F  L  D  T  H  V  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0104N06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7992" stop="7990"/>
                    <exon start="7681" stop="7517"/>
                    <exon start="6950" stop="6802"/>
                    <exon start="5803" stop="5416"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVNSHRIFDIEIHGILLWASMGFLMPAGILTIRFSNTEECSTTKLKILFYVHGTLQVLSVVLATAGAVLSIKSFENLFNNTHQRIGLALYIAVYVQFFMGFRRPMRGSKGRSVWYFFHWLLGTTICLAGIINTYTGLNAYNQRTSKPISLWTIIFTAQISFMGLFYLFQDKWEYIQKQGVILNNNETTTPQVEIVVPQNDEQKMIMRTESGRKSNALGTFFSRHNVLNKLFQQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="15521" PGL_stop="10279"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12838" e_stop="12672"/>
            <exon e_start="12577" e_stop="12462"/>
            <exon e_start="12369" e_stop="12306"/>
            <exon e_start="10865" e_stop="10279"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.968" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.949" e_score="1.000"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="12838" e_stop="12672" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12577" e_stop="12462" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12369" e_stop="12306" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.949">
            <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440"/>
          </intron>
          <exon e_serial="4" e_score="0.957">
            <gDNA_exon_boundary e_start="10865" e_stop="10279" e_length="587"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12838" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12782" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12753" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12735" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12734" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12734" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12734" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12724" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12724" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12721" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12721" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12721" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12719" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12718" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12718" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12717" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12708" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12707" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12707" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12706" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12706" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12706" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12705" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558279" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12704" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12701" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12556" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12555" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12554" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12366" stop="12306"/>
              <exon start="10865" stop="10352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12366" stop="12306"/>
              <exon start="10865" stop="10413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12358" stop="12306"/>
              <exon start="10865" stop="10358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12358" stop="12306"/>
              <exon start="10865" stop="10358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12358" stop="12306"/>
              <exon start="10865" stop="10358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12333" stop="12306"/>
              <exon start="10865" stop="10279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10865" stop="10364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286247" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10840" stop="10364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283346" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10837" stop="10364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10726" stop="10398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10669" stop="10364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10657" stop="10398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10639" stop="10371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616828" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCATTAAGACATGGGCCGCCTCCGCTGTGTAGCCCAAATTAGGAGCTAGGGCTCATAAATTCTTTGAACTAAAATAACTTCTTCTTCTTCTTTTCTTCATACTCACTTCGGCGGCAAACGCAGTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAG : TTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTG : GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG : ATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGAATTCCTATTTGCTTTTATCGTTGAAGTTCTTGCCAATATATTTTGTTAGCATGGTAGTAAATGCGTGGCTGATTTTGTTTCATTC</gDNA_template>
            <first_frame> E  H  *  D  M  G  R  L  R  C  V  A  Q  I  R  S  *  G  S  *  I  L  *  T  K  I  T  S  S  S  S  F  L  H  T  H  F  G  G  K  R  S  A  E  E  K  S  A  L  P  K  W  *  R  T  S :   S  I  S  I  R  L  S  G  E  L  C  P  P  K  Q  M  N  I  P  R  F  I  V  *  S  C  G  L  Q  M  K  F  V  R  S  P  N  S   : G  I  S  *  G  S  L  R  R  *  R  R  A  T  V  R  C  W  L  L  M  R :   S  S  R  R  T  Q  Q  Q  L  R  I  M  V  F  G  S  V  T  R  V  E  R  D  T  T  T  C  T  R  S  T  V  T  P  H  *  M  V  V  W  S  R  C  T  L  R  W  L  L  A  T  E  F  A  I  T  A  S  R  S  *  R  P  Q  P  F  R  L  S  C  A  R  G  R  A  Q  S  S  S  M  T  P  R  S  S  S  P  W  C  S  R  K  S  G  H  H  L  G  N  S  R  P  H  T  R  L  L  S  P  T  C  S  C  N  L  F  G  H  M  C  I  E  K  Q  L  Q  I  Y  A  I  L  V  Q  *  L  S  *  V  K  D  S  L  *  K  R  Y  K  L  N  L  F  V  R  L  T  K  *  W  W  L  L  E  Y  F  *  S  *  I  P  I  C  F  Y  R  *  S  S  C  Q  Y  I  L  L  A  W  *  *  M  R  G  *  F  C  F  I  </first_frame>
            <second_frame>  S  I  K  T  W  A  A  S  A  V  *  P  K  L  G  A  R  A  H  K  F  F  E  L  K  *  L  L  L  L  L  F  F  I  L  T  S  A  A  N  A  V  Q  R  K  R  V  P  C  R  N  G  D  V  Q   : V  P  S  V  S  G  C  R  E  S  F  A  H  R  N  R  *  T  S  Q  D  L  S  Y  E  V  V  G  Y  K  *  S  S  C  E  V  Q  I  L  :  V  F  L  E  E  A  *  E  G  E  E  E  Q  R  S  D  A  G  Y  *  *   : D  L  R  E  E  P  N  N  N  *  E  L  W  Y  L  A  P  L  P  E  *  N  G  I  P  Q  H  V  Q  G  V  P  *  H  H  I  E  W  W  C  G  A  D  V  H  *  D  G  F  S  P  Q  S  S  P  S  L  H  P  D  H  K  D  R  N  H  S  G  *  A  V  Q  E  G  E  H  K  A  V  P  *  L  Q  D  Q  V  P  L  G  V  Q  E  S  Q  A  T  I  *  E  T  Q  D  H  I  Q  G  Y  *  A  Q  L  V  H  V  T  C  L  V  I  C  A  L  R  S  N  F  R  F  M  Q  F  W  C  S  S  *  V  E  L  K  I  H  C  E  R  D  I  S  *  T  F  L  F  D  *  P  N  D  G  G  Y  *  S  I  F  N  H  E  F  L  F  A  F  I  V  E  V  L  A  N  I  F  C  *  H  G  S  K  C  V  A  D  F  V  S  F </second_frame>
            <third_frame>   A  L  R  H  G  P  P  P  L  C  S  P  N  *  E  L  G  L  I  N  S  L  N  *  N  N  F  F  F  F  F  S  S  Y  S  L  R  R  Q  T  Q  C  R  G  K  E  C  L  A  E  M  V  T  Y  K  :  F  H  Q  Y  Q  V  V  G  R  A  L  P  T  E  T  D  E  H  P  K  I  Y  R  M  K  L  W  A  T  N  E  V  R  A  K  S  K  F  W :   Y  F  L  R  K  L  K  K  V  K  K  S  N  G  Q  M  L  A  I  N  E  :  I  F  E  K  N  P  T  T  I  K  N  Y  G  I  W  L  R  Y  Q  S  R  T  G  Y  H  N  M  Y  K  E  Y  R  D  T  T  L  N  G  G  V  E  Q  M  Y  T  E  M  A  S  R  H  R  V  R  H  H  C  I  Q  I  I  K  T  A  T  I  P  A  K  L  C  K  R  E  S  T  K  Q  F  H  D  S  K  I  K  F  P  L  V  F  K  K  V  R  P  P  S  R  K  L  K  T  T  Y  K  A  T  K  P  N  L  F  M  *  L  V  W  S  Y  V  H  *  E  A  T  S  D  L  C  N  F  G  A  V  V  E  L  S  *  R  F  I  V  K  E  I  *  V  K  P  F  C  S  T  D  Q  M  M  V  V  I  R  V  F  L  I  M  N  S  Y  L  L  L  S  L  K  F  L  P  I  Y  F  V  S  M  V  V  N  A  W  L  I  L  F  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0104N06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12764" stop="12672"/>
                    <exon start="12577" stop="12462"/>
                    <exon start="12369" stop="12306"/>
                    <exon start="10865" stop="10524"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNFFFFFSSYSLRRQTQCRGKECLAEMVTYKFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRHHCIQIIKTATIPAKLCKRESTKQFHDSKIKFPLVFKKVRPPSRKLKTTYKATKPNLFM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15521" e_stop="15431"/>
            <exon e_start="15345" e_stop="15230"/>
            <exon e_start="15134" e_stop="15071"/>
            <exon e_start="13849" e_stop="13310"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.908"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.929" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="15521" e_stop="15431" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15345" e_stop="15230" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15134" e_stop="15071" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.929">
            <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="13849" e_stop="13310" e_length="540"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15521" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15517" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15483" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15481" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15478" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15476" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15476" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15475" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15475" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15474" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15471" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280073" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15470" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15469" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15469" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15468" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15466" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15466" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15465" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15460" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15460" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15459" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15454" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15454" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15450" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15449" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15449" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15438" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13849" stop="13310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13849" stop="13310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13849" stop="13310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13849" stop="13358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13746" stop="13360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13693" stop="13358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13626" stop="13310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13622" stop="13310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13606" stop="13310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13601" stop="13358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227977" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTCTTTCTTCTTCTCTTTATTAATCTCACTTCGGCGGCAAACGCAGTGCAGAGGGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAG : TTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG : GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG : ATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCTTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATGTGCATTGAGAAGCACTTTAGATTTATGGAATTTTGGTGCATTAGTTGAGTTAAGTTGAGATTCATTACAAGTTAAAACCTTTTTGTTCTACTGACCAAATGATGGTGTTTTTAATCATGGATTTCTATTTGCTTTTATCGTTCAAGTTCTTGCTAATATGATTCATTAAAAGATTCACAATCTT</gDNA_template>
            <first_frame> K  L  F  L  L  L  F  I  N  L  T  S  A  A  N  A  V  Q  R  E  R  K  P  C  R  N  G  D  L  Q   : V  P  S  V  P  G  C  R  E  S  F  A  H  *  N  R  *  A  S  Q  D  L  P  Y  E  V  V  G  Y  K  *  S  S  C  *  V  Q  I  L  :  V  F  L  E  E  A  *  E  G  E  E  E  Q  R  S  D  A  G  Y  *  *   : D  F  *  E  E  P  N  N  N  Q  E  L  W  Y  L  A  P  L  P  K  *  N  G  I  P  Q  H  V  Q  G  V  P  *  H  H  I  E  W  W  C  G  A  D  V  H  *  D  G  F  S  P  Q  S  S  P  S  L  H  S  D  H  K  D  S  N  H  S  S  *  T  V  Q  E  G  E  H  K  A  V  P  *  L  Q  D  Q  V  P  F  G  V  Q  E  S  Q  A  T  I  *  E  T  Q  D  H  I  Q  G  Y  *  A  Q  L  V  H  V  T  C  L  V  M  C  I  E  K  H  F  R  F  M  E  F  W  C  I  S  *  V  K  L  R  F  I  T  S  *  N  L  F  V  L  L  T  K  *  W  C  F  *  S  W  I  S  I  C  F  Y  R  S  S  S  C  *  Y  D  S  L  K  D  S  Q  S  </first_frame>
            <second_frame>  N  S  F  F  F  S  L  L  I  S  L  R  R  Q  T  Q  C  R  G  K  E  S  L  A  E  M  V  T  Y  K  :  F  H  Q  Y  Q  V  V  G  R  A  L  P  T  E  T  D  E  H  P  K  I  Y  R  M  K  L  W  A  T  N  E  V  R  A  K  S  K  F  W :   Y  F  L  R  K  L  K  K  V  K  K  S  N  G  Q  M  L  A  I  N  E  :  I  F  E  K  N  P  T  T  I  K  N  Y  G  I  W  L  R  Y  Q  S  R  T  G  Y  H  N  M  Y  K  E  Y  R  D  T  T  L  N  G  G  V  E  Q  M  Y  T  E  M  A  S  R  H  R  V  R  H  H  C  I  Q  I  I  K  T  A  T  I  P  A  K  L  C  K  R  E  S  T  K  Q  F  H  D  S  K  I  K  F  P  L  V  F  K  K  V  R  P  P  S  R  K  L  K  T  T  Y  K  A  T  K  P  N  L  F  M  *  L  V  W  S  C  A  L  R  S  T  L  D  L  W  N  F  G  A  L  V  E  L  S  *  D  S  L  Q  V  K  T  F  L  F  Y  *  P  N  D  G  V  F  N  H  G  F  L  F  A  F  I  V  Q  V  L  A  N  M  I  H  *  K  I  H  N  L </second_frame>
            <third_frame>   T  L  S  S  S  L  Y  *  S  H  F  G  G  K  R  S  A  E  G  K  K  A  L  P  K  W  *  L  T  S :   S  I  S  T  R  L  S  G  E  L  C  P  L  K  Q  M  S  I  P  R  F  T  V  *  S  C  G  L  Q  M  K  F  V  L  S  P  N  S   : G  I  S  *  G  S  L  R  R  *  R  R  A  T  V  R  C  W  L  L  M  R :   F  L  R  R  T  Q  Q  Q  S  R  I  M  V  F  G  S  V  T  K  V  E  R  D  T  T  T  C  T  R  S  T  V  T  P  H  *  M  V  V  W  S  R  C  T  L  R  W  L  L  A  T  E  F  A  I  T  A  F  R  S  *  R  Q  Q  P  F  Q  L  N  C  A  R  G  R  A  Q  S  S  S  M  T  P  R  S  S  S  L  W  C  S  R  K  S  G  H  H  L  G  N  S  R  P  H  T  R  L  L  S  P  T  C  S  C  N  L  F  G  H  V  H  *  E  A  L  *  I  Y  G  I  L  V  H  *  L  S  *  V  E  I  H  Y  K  L  K  P  F  C  S  T  D  Q  M  M  V  F  L  I  M  D  F  Y  L  L  L  S  F  K  F  L  L  I  *  F  I  K  R  F  T  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0104N06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15520" stop="15431"/>
                    <exon start="15345" stop="15230"/>
                    <exon start="15134" stop="15071"/>
                    <exon start="13849" stop="13508"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSFFFSLLISLRRQTQCRGKESLAEMVTYKFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRHHCIQIIKTATIPAKLCKRESTKQFHDSKIKFPLVFKKVRPPSRKLKTTYKATKPNLFM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="15487" e_stop="15459"/>
            <exon e_start="12706" e_stop="12672"/>
            <exon e_start="12577" e_stop="12462"/>
            <exon e_start="12369" e_stop="12306"/>
            <exon e_start="10865" e_stop="10279"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.966"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.949" e_score="1.000"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="15487" e_stop="15459" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15458" i_stop="12707" i_length="2752"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12706" e_stop="12672" e_length="35"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12577" e_stop="12462" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.968" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12369" e_stop="12306" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.949">
            <gDNA_intron_boundary i_start="12305" i_stop="10866" i_length="1440"/>
          </intron>
          <exon e_serial="5" e_score="0.957">
            <gDNA_exon_boundary e_start="10865" e_stop="10279" e_length="587"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15487" stop="15459"/>
              <exon start="12706" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12706" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12706" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12706" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12705" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558279" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12704" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12701" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12556" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12555" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12554" stop="12462"/>
              <exon start="12369" stop="12306"/>
              <exon start="10865" stop="10358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12366" stop="12306"/>
              <exon start="10865" stop="10352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12366" stop="12306"/>
              <exon start="10865" stop="10413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12358" stop="12306"/>
              <exon start="10865" stop="10358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12358" stop="12306"/>
              <exon start="10865" stop="10358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12358" stop="12306"/>
              <exon start="10865" stop="10358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12333" stop="12306"/>
              <exon start="10865" stop="10279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10865" stop="10364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286247" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10840" stop="10364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283346" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10837" stop="10364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10726" stop="10398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10669" stop="10364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10657" stop="10398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10639" stop="10371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616828" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGCGGCAAACGCAGTGCAGAGGGAAAGA : GAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAG : TTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTG : GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG : ATCTTCGAGAAGAACCCAACAACAATTAAGAATTATGGTATTTGGCTCCGTTACCAGAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATCCAGATCATAAAGACCGCAACCATTCCGGCTAAGCTGTGCAAGAGGGAGAGCACAAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTGACCAAATGATGGTGGTTATTAGAGTATTTTTAATCATGAATTCCTATTTGCTTTTATCGTTGAAGTTCTTGCCAATATATTTTGTTAGCATGGTAGTAAATGCGTGGCTGATTTTGTTTCATTC</gDNA_template>
            <first_frame> R  R  Q  T  Q  C  R  G  K  E :   K  R  V  P  C  R  N  G  D  V  Q   : V  P  S  V  S  G  C  R  E  S  F  A  H  R  N  R  *  T  S  Q  D  L  S  Y  E  V  V  G  Y  K  *  S  S  C  E  V  Q  I  L  :  V  F  L  E  E  A  *  E  G  E  E  E  Q  R  S  D  A  G  Y  *  *   : D  L  R  E  E  P  N  N  N  *  E  L  W  Y  L  A  P  L  P  E  *  N  G  I  P  Q  H  V  Q  G  V  P  *  H  H  I  E  W  W  C  G  A  D  V  H  *  D  G  F  S  P  Q  S  S  P  S  L  H  P  D  H  K  D  R  N  H  S  G  *  A  V  Q  E  G  E  H  K  A  V  P  *  L  Q  D  Q  V  P  L  G  V  Q  E  S  Q  A  T  I  *  E  T  Q  D  H  I  Q  G  Y  *  A  Q  L  V  H  V  T  C  L  V  I  C  A  L  R  S  N  F  R  F  M  Q  F  W  C  S  S  *  V  E  L  K  I  H  C  E  R  D  I  S  *  T  F  L  F  D  *  P  N  D  G  G  Y  *  S  I  F  N  H  E  F  L  F  A  F  I  V  E  V  L  A  N  I  F  C  *  H  G  S  K  C  V  A  D  F  V  S  F </first_frame>
            <second_frame>  G  G  K  R  S  A  E  G  K   : R  K  E  C  L  A  E  M  V  T  Y  K  :  F  H  Q  Y  Q  V  V  G  R  A  L  P  T  E  T  D  E  H  P  K  I  Y  R  M  K  L  W  A  T  N  E  V  R  A  K  S  K  F  W :   Y  F  L  R  K  L  K  K  V  K  K  S  N  G  Q  M  L  A  I  N  E  :  I  F  E  K  N  P  T  T  I  K  N  Y  G  I  W  L  R  Y  Q  S  R  T  G  Y  H  N  M  Y  K  E  Y  R  D  T  T  L  N  G  G  V  E  Q  M  Y  T  E  M  A  S  R  H  R  V  R  H  H  C  I  Q  I  I  K  T  A  T  I  P  A  K  L  C  K  R  E  S  T  K  Q  F  H  D  S  K  I  K  F  P  L  V  F  K  K  V  R  P  P  S  R  K  L  K  T  T  Y  K  A  T  K  P  N  L  F  M  *  L  V  W  S  Y  V  H  *  E  A  T  S  D  L  C  N  F  G  A  V  V  E  L  S  *  R  F  I  V  K  E  I  *  V  K  P  F  C  S  T  D  Q  M  M  V  V  I  R  V  F  L  I  M  N  S  Y  L  L  L  S  L  K  F  L  P  I  Y  F  V  S  M  V  V  N  A  W  L  I  L  F  H   </second_frame>
            <third_frame>   A  A  N  A  V  Q  R  E  R  :  E  K  S  A  L  P  K  W  *  R  T  S :   S  I  S  I  R  L  S  G  E  L  C  P  P  K  Q  M  N  I  P  R  F  I  V  *  S  C  G  L  Q  M  K  F  V  R  S  P  N  S   : G  I  S  *  G  S  L  R  R  *  R  R  A  T  V  R  C  W  L  L  M  R :   S  S  R  R  T  Q  Q  Q  L  R  I  M  V  F  G  S  V  T  R  V  E  R  D  T  T  T  C  T  R  S  T  V  T  P  H  *  M  V  V  W  S  R  C  T  L  R  W  L  L  A  T  E  F  A  I  T  A  S  R  S  *  R  P  Q  P  F  R  L  S  C  A  R  G  R  A  Q  S  S  S  M  T  P  R  S  S  S  P  W  C  S  R  K  S  G  H  H  L  G  N  S  R  P  H  T  R  L  L  S  P  T  C  S  C  N  L  F  G  H  M  C  I  E  K  Q  L  Q  I  Y  A  I  L  V  Q  *  L  S  *  V  K  D  S  L  *  K  R  Y  K  L  N  L  F  V  R  L  T  K  *  W  W  L  L  E  Y  F  *  S  *  I  P  I  C  F  Y  R  *  S  S  C  Q  Y  I  L  L  A  W  *  *  M  R  G  *  F  C  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0104N06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15486" stop="15459"/>
                    <exon start="12706" stop="12672"/>
                    <exon start="12577" stop="12462"/>
                    <exon start="12369" stop="12306"/>
                    <exon start="10865" stop="10524"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGKRSAEGKRKECLAEMVTYKFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRHHCIQIIKTATIPAKLCKRESTKQFHDSKIKFPLVFKKVRPPSRKLKTTYKATKPNLFM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="15517" e_stop="15431"/>
            <exon e_start="15345" e_stop="15230"/>
            <exon e_start="15134" e_stop="15071"/>
            <exon e_start="13849" e_stop="13620"/>
            <exon e_start="10638" e_stop="10403"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.885"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="0.983"/>
          <exon-intron don_prob="0.999" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.885">
            <gDNA_exon_boundary e_start="15517" e_stop="15431" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15430" i_stop="15346" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="15345" e_stop="15230" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="15229" i_stop="15135" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15134" e_stop="15071" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.929">
            <gDNA_intron_boundary i_start="15070" i_stop="13850" i_length="1221"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13849" e_stop="13620" e_length="230"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13619" i_stop="10639" i_length="2981"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="10638" e_stop="10403" e_length="236"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15517" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13620"/>
              <exon start="10638" stop="10403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15476" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15475" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15475" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15474" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15471" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280073" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15469" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15466" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15450" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15438" stop="15431"/>
              <exon start="15345" stop="15230"/>
              <exon start="15134" stop="15071"/>
              <exon start="13849" stop="13625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318742" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTCTTCTTCTCTTTATTAATCTCACTTCGGCGGCAAACGCAGTGCAGAGGGAAAGAAAGCCTTGCCGAAATGGTGACTTACAAG : TTCCATCAGTACCAGGTTGTCGGGAGAGCTTTGCCCACTGAAACAGATGAGCATCCCAAGATTTACCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCTAAGTCCAAATTCTG : GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAG : ATTTTTGAGAAGAACCCAACAACAATCAAGAATTATGGTATTTGGCTCCGTTACCAAAGTAGAACGGGATACCACAACATGTACAAGGAGTACCGTGACACCACATTGAATGGTGGTGTGGAGCAGATGTACACTGAGATGGCTTCTCGCCACAGAGTTCGCCATCACTGCATTCAGATCATAAAGACAGCAACCATTCCAGCTAAACTGTGCAAGAGGGAGAGCACAAA : AAAGCAGTTCCATGACTCCAAGATCAAGTTCCCCTTGGTGTTCAAGAAAGTCAGGCCACCATCTAGGAAACTCAAGACCACATACAAGGCTACTAAGCCCAACTTGTTCATGTAACTTGTTTGGTCATATGTGCATTGAGAAGCAACTTCAGATTTATGCAATTTTGGTGCAGTAGTTGAGTTGAGTTAAAGATTCATTGTGAAAGAGATATAAGTTAAACCTTTTTGTTCGACTG</gDNA_template>
            <first_frame> S  F  F  F  S  L  L  I  S  L  R  R  Q  T  Q  C  R  G  K  E  S  L  A  E  M  V  T  Y  K  :  F  H  Q  Y  Q  V  V  G  R  A  L  P  T  E  T  D  E  H  P  K  I  Y  R  M  K  L  W  A  T  N  E  V  R  A  K  S  K  F  W :   Y  F  L  R  K  L  K  K  V  K  K  S  N  G  Q  M  L  A  I  N  E  :  I  F  E  K  N  P  T  T  I  K  N  Y  G  I  W  L  R  Y  Q  S  R  T  G  Y  H  N  M  Y  K  E  Y  R  D  T  T  L  N  G  G  V  E  Q  M  Y  T  E  M  A  S  R  H  R  V  R  H  H  C  I  Q  I  I  K  T  A  T  I  P  A  K  L  C  K  R  E  S  T  K :   K  Q  F  H  D  S  K  I  K  F  P  L  V  F  K  K  V  R  P  P  S  R  K  L  K  T  T  Y  K  A  T  K  P  N  L  F  M  *  L  V  W  S  Y  V  H  *  E  A  T  S  D  L  C  N  F  G  A  V  V  E  L  S  *  R  F  I  V  K  E  I  *  V  K  P  F  C  S  T  </first_frame>
            <second_frame>  L  S  S  S  L  Y  *  S  H  F  G  G  K  R  S  A  E  G  K  K  A  L  P  K  W  *  L  T  S :   S  I  S  T  R  L  S  G  E  L  C  P  L  K  Q  M  S  I  P  R  F  T  V  *  S  C  G  L  Q  M  K  F  V  L  S  P  N  S   : G  I  S  *  G  S  L  R  R  *  R  R  A  T  V  R  C  W  L  L  M  R :   F  L  R  R  T  Q  Q  Q  S  R  I  M  V  F  G  S  V  T  K  V  E  R  D  T  T  T  C  T  R  S  T  V  T  P  H  *  M  V  V  W  S  R  C  T  L  R  W  L  L  A  T  E  F  A  I  T  A  F  R  S  *  R  Q  Q  P  F  Q  L  N  C  A  R  G  R  A  Q   : K  S  S  S  M  T  P  R  S  S  S  P  W  C  S  R  K  S  G  H  H  L  G  N  S  R  P  H  T  R  L  L  S  P  T  C  S  C  N  L  F  G  H  M  C  I  E  K  Q  L  Q  I  Y  A  I  L  V  Q  *  L  S  *  V  K  D  S  L  *  K  R  Y  K  L  N  L  F  V  R  L </second_frame>
            <third_frame>   F  L  L  L  F  I  N  L  T  S  A  A  N  A  V  Q  R  E  R  K  P  C  R  N  G  D  L  Q   : V  P  S  V  P  G  C  R  E  S  F  A  H  *  N  R  *  A  S  Q  D  L  P  Y  E  V  V  G  Y  K  *  S  S  C  *  V  Q  I  L  :  V  F  L  E  E  A  *  E  G  E  E  E  Q  R  S  D  A  G  Y  *  *   : D  F  *  E  E  P  N  N  N  Q  E  L  W  Y  L  A  P  L  P  K  *  N  G  I  P  Q  H  V  Q  G  V  P  *  H  H  I  E  W  W  C  G  A  D  V  H  *  D  G  F  S  P  Q  S  S  P  S  L  H  S  D  H  K  D  S  N  H  S  S  *  T  V  Q  E  G  E  H  K  :  K  A  V  P  *  L  Q  D  Q  V  P  L  G  V  Q  E  S  Q  A  T  I  *  E  T  Q  D  H  I  Q  G  Y  *  A  Q  L  V  H  V  T  C  L  V  I  C  A  L  R  S  N  F  R  F  M  Q  F  W  C  S  S  *  V  E  L  K  I  H  C  E  R  D  I  S  *  T  F  L  F  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0104N06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15517" stop="15431"/>
                    <exon start="15345" stop="15230"/>
                    <exon start="15134" stop="15071"/>
                    <exon start="13849" stop="13620"/>
                    <exon start="10638" stop="10524"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFFSLLISLRRQTQCRGKESLAEMVTYKFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRHHCIQIIKTATIPAKLCKRESTKKQFHDSKIKFPLVFKKVRPPSRKLKTTYKATKPNLFM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="12714" e_stop="12672"/>
            <exon e_start="12577" e_stop="12462"/>
            <exon e_start="12369" e_stop="11978"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12714" e_stop="12672" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12671" i_stop="12578" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12577" e_stop="12462" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12461" i_stop="12370" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.969">
            <gDNA_exon_boundary e_start="12369" e_stop="11978" e_length="392"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12714" stop="12672"/>
              <exon start="12577" stop="12462"/>
              <exon start="12369" stop="11978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331609" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGCAGAGGAAAAGAGTGCCTTGCCGAAATGGTGACGTACAAG : TTCCATCAGTATCAGGTTGTCGGGAGAGCTTTGCCCACCGAAACAGATGAACATCCCAAGATTTATCGTATGAAGTTGTGGGCTACAAATGAAGTTCGTGCGAAGTCCAAATTCTG : GTATTTCTTGAGGAAGCTTAAGAAGGTGAAGAAGAGCAACGGTCAGATGCTGGCTATTAATGAGGTACGATGAAGATTCATTTCTCTAGTTTATCTTAACTGAGTCTATTCTTAGATTTTGTATTGGAAATGTTATGATCAGTAGTTCAATGATAGCAAATTAGGTGCATGGTGTTTCGTATTTGGTAAGTAGTTTTTTTATTTTATATTATGTGCTTTTGGATATAAAAATGTAAATCGTATGAAGTTTTGGTTGCATATGTGAAATATGATGTATATTTTATCCAAGTATGGCTTTCTTTTTGGGCTGTGATTATTGTTGGTGTAAGTCCATCATCAAGATAAGTTTTGTTCTTTATCAAAAAAACTTTATCTCAAAAGATTGGATCTTG</gDNA_template>
            <first_frame> V  Q  R  K  R  V  P  C  R  N  G  D  V  Q   : V  P  S  V  S  G  C  R  E  S  F  A  H  R  N  R  *  T  S  Q  D  L  S  Y  E  V  V  G  Y  K  *  S  S  C  E  V  Q  I  L  :  V  F  L  E  E  A  *  E  G  E  E  E  Q  R  S  D  A  G  Y  *  *  G  T  M  K  I  H  F  S  S  L  S  *  L  S  L  F  L  D  F  V  L  E  M  L  *  S  V  V  Q  *  *  Q  I  R  C  M  V  F  R  I  W  *  V  V  F  L  F  Y  I  M  C  F  W  I  *  K  C  K  S  Y  E  V  L  V  A  Y  V  K  Y  D  V  Y  F  I  Q  V  W  L  S  F  W  A  V  I  I  V  G  V  S  P  S  S  R  *  V  L  F  F  I  K  K  T  L  S  Q  K  I  G  S   </first_frame>
            <second_frame>  C  R  G  K  E  C  L  A  E  M  V  T  Y  K  :  F  H  Q  Y  Q  V  V  G  R  A  L  P  T  E  T  D  E  H  P  K  I  Y  R  M  K  L  W  A  T  N  E  V  R  A  K  S  K  F  W :   Y  F  L  R  K  L  K  K  V  K  K  S  N  G  Q  M  L  A  I  N  E  V  R  *  R  F  I  S  L  V  Y  L  N  *  V  Y  S  *  I  L  Y  W  K  C  Y  D  Q  *  F  N  D  S  K  L  G  A  W  C  F  V  F  G  K  *  F  F  Y  F  I  L  C  A  F  G  Y  K  N  V  N  R  M  K  F  W  L  H  M  *  N  M  M  Y  I  L  S  K  Y  G  F  L  F  G  L  *  L  L  L  V  *  V  H  H  Q  D  K  F  C  S  L  S  K  K  L  Y  L  K  R  L  D  L  </second_frame>
            <third_frame>   A  E  E  K  S  A  L  P  K  W  *  R  T  S :   S  I  S  I  R  L  S  G  E  L  C  P  P  K  Q  M  N  I  P  R  F  I  V  *  S  C  G  L  Q  M  K  F  V  R  S  P  N  S   : G  I  S  *  G  S  L  R  R  *  R  R  A  T  V  R  C  W  L  L  M  R  Y  D  E  D  S  F  L  *  F  I  L  T  E  S  I  L  R  F  C  I  G  N  V  M  I  S  S  S  M  I  A  N  *  V  H  G  V  S  Y  L  V  S  S  F  F  I  L  Y  Y  V  L  L  D  I  K  M  *  I  V  *  S  F  G  C  I  C  E  I  *  C  I  F  Y  P  S  M  A  F  F  L  G  C  D  Y  C  W  C  K  S  I  I  K  I  S  F  V  L  Y  Q  K  N  F  I  S  K  D  W  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0104N06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12713" stop="12672"/>
                    <exon start="12577" stop="12462"/>
                    <exon start="12369" stop="12297"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRGKECLAEMVTYKFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="20943" PGL_stop="16954"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20943" e_stop="20599"/>
            <exon e_start="19708" e_stop="19633"/>
            <exon e_start="19236" e_stop="19122"/>
            <exon e_start="17316" e_stop="16954"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.772" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20943" e_stop="20599" e_length="345"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="20598" i_stop="19709" i_length="890"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19708" e_stop="19633" e_length="76"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.772">
            <gDNA_intron_boundary i_start="19632" i_stop="19237" i_length="396"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19236" e_stop="19122" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="19121" i_stop="17317" i_length="1805"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="17316" e_stop="16954" e_length="363"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20943" stop="20599"/>
              <exon start="19708" stop="19633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20937" stop="20599"/>
              <exon start="19708" stop="19633"/>
              <exon start="19236" stop="19122"/>
              <exon start="17316" stop="17132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20935" stop="20599"/>
              <exon start="19708" stop="19633"/>
              <exon start="19236" stop="19122"/>
              <exon start="17316" stop="17296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20935" stop="20599"/>
              <exon start="19708" stop="19633"/>
              <exon start="19236" stop="19190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20934" stop="20599"/>
              <exon start="19708" stop="19633"/>
              <exon start="19236" stop="19122"/>
              <exon start="17316" stop="17082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20928" stop="20599"/>
              <exon start="19708" stop="19633"/>
              <exon start="19236" stop="19122"/>
              <exon start="17316" stop="17058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20927" stop="20599"/>
              <exon start="19708" stop="19633"/>
              <exon start="19236" stop="19122"/>
              <exon start="17316" stop="17231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20925" stop="20599"/>
              <exon start="19708" stop="19633"/>
              <exon start="19236" stop="19160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20918" stop="20599"/>
              <exon start="19708" stop="19633"/>
              <exon start="19236" stop="19122"/>
              <exon start="17316" stop="17286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20909" stop="20599"/>
              <exon start="19708" stop="19633"/>
              <exon start="19236" stop="19122"/>
              <exon start="17316" stop="17125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20840" stop="20599"/>
              <exon start="19708" stop="19633"/>
              <exon start="19236" stop="19122"/>
              <exon start="17316" stop="17279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20834" stop="20599"/>
              <exon start="19708" stop="19633"/>
              <exon start="19236" stop="19122"/>
              <exon start="17316" stop="16954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20825" stop="20599"/>
              <exon start="19708" stop="19633"/>
              <exon start="19236" stop="19122"/>
              <exon start="17316" stop="16984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20813" stop="20599"/>
              <exon start="19708" stop="19633"/>
              <exon start="19236" stop="19122"/>
              <exon start="17316" stop="17047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20740" stop="20599"/>
              <exon start="19708" stop="19633"/>
              <exon start="19236" stop="19122"/>
              <exon start="17316" stop="17012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416777" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20731" stop="20599"/>
              <exon start="19708" stop="19633"/>
              <exon start="19236" stop="19122"/>
              <exon start="17316" stop="17077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20713" stop="20599"/>
              <exon start="19708" stop="19633"/>
              <exon start="19236" stop="19122"/>
              <exon start="17316" stop="17098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19204" stop="19122"/>
              <exon start="17316" stop="16984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19204" stop="19122"/>
              <exon start="17316" stop="16984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19204" stop="19122"/>
              <exon start="17316" stop="16989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354787" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAGACCGCGAAATCGCCGATCACGTAGCCGCGCCGATCTGATTCTGACAATCGGCGTCAAAAGCGATACGACTATTCGAATCAATCGCGGTAAGGCTAAACTGTTACTAGATCTCTGTCGGGGGAAAGTATGAGCAAAGAAGAGGGGAAGAACATGGCCTCTTCGGCCACCGGCGAACCTTTGCCGGCAAACTATTACTACGGTACATTTCAAGGAGTAGCAAATCATCCGCCTCCTCCTCCACAGTCTCACCCGGTGTTCGGTTTTCCTCAGCCCGTTCCTCCTCCTGGTGTCGCCGGCGCTCCTCCTCAATACTATCCTCAGGGTTATCAAACTGTTCACG : GTTATGCTGTTGCTGAAGGTAGACCTATGAGGGAGCACCGTCTTCCTTGCTGTGGTGTGGGGATCGGCTGGGTCTT : GTTCATCTCTGGTTTCTTTCTTGGTACCATACCTTGGTATGTTGGAGCTTTTCTTCTTTTGTGTGTACGGATCGATTATAGAGAGAAGGCTGGCCTTATAGCATGCACATTAGGG : GCCATGCTTGCTTTGATTGCTGTGACTTTTGGTGTGACAAAGGCAACTCATTCCTGGTGAGGCTATTTAGGCTGCAATATCTAAACATATCGTGGCGATCTCCATAGAAAAAGGGGGAAAGAGAGAAAGGATAGAGCAACTTAAGTAATTGGTTTTTGTTTGTGAGATGTATCCTTTTCTCAATATGTATATCAAATATTGACTTGGGTGGTTCTTATGCTAAACAGGCACTTTCCTTTGTAATGTTTATGCTACTTCTTGGTTTTGCTCAAATAGTGATGTATATTTTTTGAAAATTCCCCAAAATATAAGTGCAGAAATATATTCAGCTCCATTGTGGGGACTTTACCATTTTTTTTAAGA</gDNA_template>
            <first_frame> R  R  P  R  N  R  R  S  R  S  R  A  D  L  I  L  T  I  G  V  K  S  D  T  T  I  R  I  N  R  G  K  A  K  L  L  L  D  L  C  R  G  K  V  *  A  K  K  R  G  R  T  W  P  L  R  P  P  A  N  L  C  R  Q  T  I  T  T  V  H  F  K  E  *  Q  I  I  R  L  L  L  H  S  L  T  R  C  S  V  F  L  S  P  F  L  L  L  V  S  P  A  L  L  L  N  T  I  L  R  V  I  K  L  F  T  :  V  M  L  L  L  K  V  D  L  *  G  S  T  V  F  L  A  V  V  W  G  S  A  G  S   : C  S  S  L  V  S  F  L  V  P  Y  L  G  M  L  E  L  F  F  F  C  V  Y  G  S  I  I  E  R  R  L  A  L  *  H  A  H  *  G :   P  C  L  L  *  L  L  *  L  L  V  *  Q  R  Q  L  I  P  G  E  A  I  *  A  A  I  S  K  H  I  V  A  I  S  I  E  K  G  G  K  R  E  R  I  E  Q  L  K  *  L  V  F  V  C  E  M  Y  P  F  L  N  M  Y  I  K  Y  *  L  G  W  F  L  C  *  T  G  T  F  L  C  N  V  Y  A  T  S  W  F  C  S  N  S  D  V  Y  F  L  K  I  P  Q  N  I  S  A  E  I  Y  S  A  P  L  W  G  L  Y  H  F  F  *   </first_frame>
            <second_frame>  E  D  R  E  I  A  D  H  V  A  A  P  I  *  F  *  Q  S  A  S  K  A  I  R  L  F  E  S  I  A  V  R  L  N  C  Y  *  I  S  V  G  G  K  Y  E  Q  R  R  G  E  E  H  G  L  F  G  H  R  R  T  F  A  G  K  L  L  L  R  Y  I  S  R  S  S  K  S  S  A  S  S  S  T  V  S  P  G  V  R  F  S  S  A  R  S  S  S  W  C  R  R  R  S  S  S  I  L  S  S  G  L  S  N  C  S  R :   L  C  C  C  *  R  *  T  Y  E  G  A  P  S  S  L  L  W  C  G  D  R  L  G  L  :  V  H  L  W  F  L  S  W  Y  H  T  L  V  C  W  S  F  S  S  F  V  C  T  D  R  L  *  R  E  G  W  P  Y  S  M  H  I  R   : G  H  A  C  F  D  C  C  D  F  W  C  D  K  G  N  S  F  L  V  R  L  F  R  L  Q  Y  L  N  I  S  W  R  S  P  *  K  K  G  E  R  E  K  G  *  S  N  L  S  N  W  F  L  F  V  R  C  I  L  F  S  I  C  I  S  N  I  D  L  G  G  S  Y  A  K  Q  A  L  S  F  V  M  F  M  L  L  L  G  F  A  Q  I  V  M  Y  I  F  *  K  F  P  K  I  *  V  Q  K  Y  I  Q  L  H  C  G  D  F  T  I  F  F  K  </second_frame>
            <third_frame>   K  T  A  K  S  P  I  T  *  P  R  R  S  D  S  D  N  R  R  Q  K  R  Y  D  Y  S  N  Q  S  R  *  G  *  T  V  T  R  S  L  S  G  E  S  M  S  K  E  E  G  K  N  M  A  S  S  A  T  G  E  P  L  P  A  N  Y  Y  Y  G  T  F  Q  G  V  A  N  H  P  P  P  P  P  Q  S  H  P  V  F  G  F  P  Q  P  V  P  P  P  G  V  A  G  A  P  P  Q  Y  Y  P  Q  G  Y  Q  T  V  H   : G  Y  A  V  A  E  G  R  P  M  R  E  H  R  L  P  C  C  G  V  G  I  G  W  V  L :   F  I  S  G  F  F  L  G  T  I  P  W  Y  V  G  A  F  L  L  L  C  V  R  I  D  Y  R  E  K  A  G  L  I  A  C  T  L  G  :  A  M  L  A  L  I  A  V  T  F  G  V  T  K  A  T  H  S  W  *  G  Y  L  G  C  N  I  *  T  Y  R  G  D  L  H  R  K  R  G  K  E  R  K  D  R  A  T  *  V  I  G  F  C  L  *  D  V  S  F  S  Q  Y  V  Y  Q  I  L  T  W  V  V  L  M  L  N  R  H  F  P  L  *  C  L  C  Y  F  L  V  L  L  K  *  *  C  I  F  F  E  N  S  P  K  Y  K  C  R  N  I  F  S  S  I  V  G  T  L  P  F  F  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0104N06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20842" stop="20599"/>
                    <exon start="19708" stop="19633"/>
                    <exon start="19236" stop="19122"/>
                    <exon start="17316" stop="17257"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVTRSLSGESMSKEEGKNMASSATGEPLPANYYYGTFQGVANHPPPPPQSHPVFGFPQPVPPPGVAGAPPQYYPQGYQTVHGYAVAEGRPMREHRLPCCGVGIGWVLFISGFFLGTIPWYVGAFLLLCVRIDYREKAGLIACTLGAMLALIAVTFGVTKATHSW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="28088" PGL_stop="28706"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28088" e_stop="28706"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="28088" e_stop="28706" e_length="619"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28088" stop="28706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28088" stop="28664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426394" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAGTCCAGGACTGCACTTTTTGACGTCTATTGGTATGGCTTTTGATTACCAACATAACGAATTGTTGATCTTGAGAATCTTTTGTGTGGGAATAATGTTTGAAGTCCCGAATCACGTTGAGGTGTATTCGAGTAAGAGTGGGAAATGGAAGAAGCTGAAAAATGAGATGATTTTTCATATTGTTGAGTTTACTTGCAATGTGATCGTTAAAGGGGTTGCATATTGGTTGGTTTGTATGCCTGATAAGTTCGGATCGCGTGCTGTGTTTGTGCGATTTGATGTGGGGAAACTAGTGTTTGAGAAGTTACCTTCGATAGGAAGGCGTAAGAAACATCAATATCTTGTGGAATTGGAGGGTTCTCTTTGTATGTTAGACTGGGATCATAAAGATGATTGTCATATGGATGTTTGGGTAATGGATGATGTTGATGGTTGGAGTAAGAAATACAGTGTTGGACCTTTAGTCGGATTTGACCGAATCTTGGGTTGTTTGAGGAATGGTGACATTGTAGTTAAGAATGAAAATGGAGTCATATTCATTTGTGATCCCATAACTAATTCAGTCAAGGAAAATTTCAGCATTGATAATAGTAAGGATGAATCATATGTGGTTGTTGA</gDNA_template>
            <first_frame> P  V  Q  D  C  T  F  *  R  L  L  V  W  L  L  I  T  N  I  T  N  C  *  S  *  E  S  F  V  W  E  *  C  L  K  S  R  I  T  L  R  C  I  R  V  R  V  G  N  G  R  S  *  K  M  R  *  F  F  I  L  L  S  L  L  A  M  *  S  L  K  G  L  H  I  G  W  F  V  C  L  I  S  S  D  R  V  L  C  L  C  D  L  M  W  G  N  *  C  L  R  S  Y  L  R  *  E  G  V  R  N  I  N  I  L  W  N  W  R  V  L  F  V  C  *  T  G  I  I  K  M  I  V  I  W  M  F  G  *  W  M  M  L  M  V  G  V  R  N  T  V  L  D  L  *  S  D  L  T  E  S  W  V  V  *  G  M  V  T  L  *  L  R  M  K  M  E  S  Y  S  F  V  I  P  *  L  I  Q  S  R  K  I  S  A  L  I  I  V  R  M  N  H  M  W  L  L  </first_frame>
            <second_frame>  Q  S  R  T  A  L  F  D  V  Y  W  Y  G  F  *  L  P  T  *  R  I  V  D  L  E  N  L  L  C  G  N  N  V  *  S  P  E  S  R  *  G  V  F  E  *  E  W  E  M  E  E  A  E  K  *  D  D  F  S  Y  C  *  V  Y  L  Q  C  D  R  *  R  G  C  I  L  V  G  L  Y  A  *  *  V  R  I  A  C  C  V  C  A  I  *  C  G  E  T  S  V  *  E  V  T  F  D  R  K  A  *  E  T  S  I  S  C  G  I  G  G  F  S  L  Y  V  R  L  G  S  *  R  *  L  S  Y  G  C  L  G  N  G  *  C  *  W  L  E  *  E  I  Q  C  W  T  F  S  R  I  *  P  N  L  G  L  F  E  E  W  *  H  C  S  *  E  *  K  W  S  H  I  H  L  *  S  H  N  *  F  S  Q  G  K  F  Q  H  *  *  *  *  G  *  I  I  C  G  C  * </second_frame>
            <third_frame>   S  P  G  L  H  F  L  T  S  I  G  M  A  F  D  Y  Q  H  N  E  L  L  I  L  R  I  F  C  V  G  I  M  F  E  V  P  N  H  V  E  V  Y  S  S  K  S  G  K  W  K  K  L  K  N  E  M  I  F  H  I  V  E  F  T  C  N  V  I  V  K  G  V  A  Y  W  L  V  C  M  P  D  K  F  G  S  R  A  V  F  V  R  F  D  V  G  K  L  V  F  E  K  L  P  S  I  G  R  R  K  K  H  Q  Y  L  V  E  L  E  G  S  L  C  M  L  D  W  D  H  K  D  D  C  H  M  D  V  W  V  M  D  D  V  D  G  W  S  K  K  Y  S  V  G  P  L  V  G  F  D  R  I  L  G  C  L  R  N  G  D  I  V  V  K  N  E  N  G  V  I  F  I  C  D  P  I  T  N  S  V  K  E  N  F  S  I  D  N  S  K  D  E  S  Y  V  V  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0104N06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28090" stop="28704"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPGLHFLTSIGMAFDYQHNELLILRIFCVGIMFEVPNHVEVYSSKSGKWKKLKNEMIFHIVEFTCNVIVKGVAYWLVCMPDKFGSRAVFVRFDVGKLVFEKLPSIGRRKKHQYLVELEGSLCMLDWDHKDDCHMDVWVMDDVDGWSKKYSVGPLVGFDRILGCLRNGDIVVKNENGVIFICDPITNSVKENFSIDNSKDESYVVV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="39241" PGL_stop="37146"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39241" e_stop="37146"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="39241" e_stop="37146" e_length="2096"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39241" stop="38757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39015" stop="38412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38911" stop="37146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38909" stop="38483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38573" stop="37977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37983" stop="37274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37982" stop="37511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291681" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATTGATTCGTTTTTCCGCTTTCCTTATATCGAATATACCACACTTTCTCCTCCTCCAAAAGTTGAAACTACCTGTAAAGAGGTTAAATGAGACTCTGAAATTTCTGCCTAATATAATTCAGATTTGGTCTGTTTGGTTTTTTCTTCTTCCACGTTTTCCAACTTGTTGCACAATTTTCACTATATTTTTTCTCTTTCGGTTTTCTTGTTTGACCCACCAATCCAACCTTCATATATTGACCCTTCTTCCTTCTTCCATCTTACTATATAAACCCTAACCACACCATTCAAATCCATATTATCGAACAGTTTCCGGTGGAGGGCTAAGGAAGAAGAAGAAGAAGAAGAGAGCTATATTGTACGGTACTTCATCACATGGCATCCATTTGGGGTTTGTTATCTCCATGGATACCTTATTTCATTTCTTTCATAGCTTTTTTACTTCTTCTTGAACAGATCTCTTACATCAAGAAGAAGCGTTTTCTTCCTGGCCCAACTCTTGTATTCCCCTTCCTTGGCAACGTAATTCCCTTAGTCACAAATCCAACTAAATTCTGGGACCTTCAATCAGCTTTAGCTAAGTCTACTAGCCATGGTTTTTCTGTTAACTACATCATAGGTAAGTTCATTCTTTACATCCACTCAACTGACCTCTCTCATAAGGTCTTTGCCAATGTCCGCCCTGACGCTTTCCATCTTATCGGTCACCCTTTTGGGAAAAAGCTATTCGGCGAACATAACTTGATTTACATGTTTGGGCAAGAACATAAAGACCTTCGCCGACGAATTGCCCCAAATTTTACCCCTAAAGCTCTGGGAACTTACACTGATATTCAACAGAGGATTATTATCAAACACTTCAAGTCCTGGTTAGATGAAGCATCCAAATCCCCTAACACCCCAATCCCGCTTCGTCTACTTTGCAGGGATATGAACTTGGATACTTCTCAGACTGTGTTCGTTGGTCCATACTTGGATGGAGAATCGAGAAAGAGATTTAATGTTGATTACAATTACTTCAATGTTGGGTTAATGAAACTTCCTGTTGATTTACCGGGTTTTGCCTTCAGAAATGCTAGATTAGCAGTTGGGAGATTAGTTGACACCCTTTCGGTTTGTGTGGAACAAAGCTTAAACAAGATGAAAAACGAAGAAGAACCCACATGCTTGATTGATTTCTGGATGCAGGAAAATTTAAGAGAGATTAACGAAGCTAAGATCAATGGATTACAAAAGCCATTTCAGTACAGTAACAAGGAACTTGGAGGTTACCTGTTCGACTTCCTCTTTGCTGCTCAAGATGCTTCTACTTCTGCTCTGTTATGGGCAATCGTGCTTCTAGATTCTCACCCACAAGTTCTGGAGAAAGTTCGGTCGGATGTAGCGAGATTCTGGTCGCCAGAATCTGAGGAGCCGCTGACGGCGGAAATGCTCAGGGAAATGAAGTACCTGGAAGCGGTGGCGCGTGAGATAATCAGAATCAGAGCTCCGGCGACAATGGTGCCACATATTGCCGGCGAAGAATTCCGGTTAACCGAAGATTACGTTATCCCAAAAGGAACAATTGTGTTCCCGTCGGTTTTTGATTCATCATTTCAGGGTTTTCCTGAACCGGAGAAATTTGAACCGGACCGGTTCATGGAGGAGAGACAAGAGGAGCGGGTTTACAAAAAGAACTTTCTAGCATTTGGTGCTGGGCCCCATGCGTGTGTCGGCCAGAAGTATGCTATTAACCACTTGATGCTTTTCATTGCTATGTTTACGGCTCTGATTGATTTCAAGAGACACAAAACCGACGGCTGCGATGACATCTCGTATATTCCAACCATTGCTCCAAAGGATGATTGCAAAGTTTTCCTTGCACACAGGTGCACACGATGATTGCCCATTTTTTAAAAAAATAATCAATTTGGCCCCATTTTAATTATTTTTCTATTTTTTTCCTTGTTTTTTTTTTTAATTTTAAATTTTAGTGTGTGAATACACGTAACTTGATCAAATGATCAAGATTCTTTTAAAATGTTTGTTGGAGCAATTGATGGAGTGACAAATATTTGGGATTGTGTGGAAGATTAATAAAAGAAATTCCTTTTA</gDNA_template>
            <first_frame> S  I  D  S  F  F  R  F  P  Y  I  E  Y  T  T  L  S  P  P  P  K  V  E  T  T  C  K  E  V  K  *  D  S  E  I  S  A  *  Y  N  S  D  L  V  C  L  V  F  S  S  S  T  F  S  N  L  L  H  N  F  H  Y  I  F  S  L  S  V  F  L  F  D  P  P  I  Q  P  S  Y  I  D  P  S  S  F  F  H  L  T  I  *  T  L  T  T  P  F  K  S  I  L  S  N  S  F  R  W  R  A  K  E  E  E  E  E  E  E  S  Y  I  V  R  Y  F  I  T  W  H  P  F  G  V  C  Y  L  H  G  Y  L  I  S  F  L  S  *  L  F  Y  F  F  L  N  R  S  L  T  S  R  R  S  V  F  F  L  A  Q  L  L  Y  S  P  S  L  A  T  *  F  P  *  S  Q  I  Q  L  N  S  G  T  F  N  Q  L  *  L  S  L  L  A  M  V  F  L  L  T  T  S  *  V  S  S  F  F  T  S  T  Q  L  T  S  L  I  R  S  L  P  M  S  A  L  T  L  S  I  L  S  V  T  L  L  G  K  S  Y  S  A  N  I  T  *  F  T  C  L  G  K  N  I  K  T  F  A  D  E  L  P  Q  I  L  P  L  K  L  W  E  L  T  L  I  F  N  R  G  L  L  S  N  T  S  S  P  G  *  M  K  H  P  N  P  L  T  P  Q  S  R  F  V  Y  F  A  G  I  *  T  W  I  L  L  R  L  C  S  L  V  H  T  W  M  E  N  R  E  R  D  L  M  L  I  T  I  T  S  M  L  G  *  *  N  F  L  L  I  Y  R  V  L  P  S  E  M  L  D  *  Q  L  G  D  *  L  T  P  F  R  F  V  W  N  K  A  *  T  R  *  K  T  K  K  N  P  H  A  *  L  I  S  G  C  R  K  I  *  E  R  L  T  K  L  R  S  M  D  Y  K  S  H  F  S  T  V  T  R  N  L  E  V  T  C  S  T  S  S  L  L  L  K  M  L  L  L  L  L  C  Y  G  Q  S  C  F  *  I  L  T  H  K  F  W  R  K  F  G  R  M  *  R  D  S  G  R  Q  N  L  R  S  R  *  R  R  K  C  S  G  K  *  S  T  W  K  R  W  R  V  R  *  S  E  S  E  L  R  R  Q  W  C  H  I  L  P  A  K  N  S  G  *  P  K  I  T  L  S  Q  K  E  Q  L  C  S  R  R  F  L  I  H  H  F  R  V  F  L  N  R  R  N  L  N  R  T  G  S  W  R  R  D  K  R  S  G  F  T  K  R  T  F  *  H  L  V  L  G  P  M  R  V  S  A  R  S  M  L  L  T  T  *  C  F  S  L  L  C  L  R  L  *  L  I  S  R  D  T  K  P  T  A  A  M  T  S  R  I  F  Q  P  L  L  Q  R  M  I  A  K  F  S  L  H  T  G  A  H  D  D  C  P  F  F  K  K  I  I  N  L  A  P  F  *  L  F  F  Y  F  F  P  C  F  F  F  *  F  *  I  L  V  C  E  Y  T  *  L  D  Q  M  I  K  I  L  L  K  C  L  L  E  Q  L  M  E  *  Q  I  F  G  I  V  W  K  I  N  K  R  N  S  F   </first_frame>
            <second_frame>  Q  L  I  R  F  S  A  F  L  I  S  N  I  P  H  F  L  L  L  Q  K  L  K  L  P  V  K  R  L  N  E  T  L  K  F  L  P  N  I  I  Q  I  W  S  V  W  F  F  L  L  P  R  F  P  T  C  C  T  I  F  T  I  F  F  L  F  R  F  S  C  L  T  H  Q  S  N  L  H  I  L  T  L  L  P  S  S  I  L  L  Y  K  P  *  P  H  H  S  N  P  Y  Y  R  T  V  S  G  G  G  L  R  K  K  K  K  K  K  R  A  I  L  Y  G  T  S  S  H  G  I  H  L  G  F  V  I  S  M  D  T  L  F  H  F  F  H  S  F  F  T  S  S  *  T  D  L  L  H  Q  E  E  A  F  S  S  W  P  N  S  C  I  P  L  P  W  Q  R  N  S  L  S  H  K  S  N  *  I  L  G  P  S  I  S  F  S  *  V  Y  *  P  W  F  F  C  *  L  H  H  R  *  V  H  S  L  H  P  L  N  *  P  L  S  *  G  L  C  Q  C  P  P  *  R  F  P  S  Y  R  S  P  F  W  E  K  A  I  R  R  T  *  L  D  L  H  V  W  A  R  T  *  R  P  S  P  T  N  C  P  K  F  Y  P  *  S  S  G  N  L  H  *  Y  S  T  E  D  Y  Y  Q  T  L  Q  V  L  V  R  *  S  I  Q  I  P  *  H  P  N  P  A  S  S  T  L  Q  G  Y  E  L  G  Y  F  S  D  C  V  R  W  S  I  L  G  W  R  I  E  K  E  I  *  C  *  L  Q  L  L  Q  C  W  V  N  E  T  S  C  *  F  T  G  F  C  L  Q  K  C  *  I  S  S  W  E  I  S  *  H  P  F  G  L  C  G  T  K  L  K  Q  D  E  K  R  R  R  T  H  M  L  D  *  F  L  D  A  G  K  F  K  R  D  *  R  S  *  D  Q  W  I  T  K  A  I  S  V  Q  *  Q  G  T  W  R  L  P  V  R  L  P  L  C  C  S  R  C  F  Y  F  C  S  V  M  G  N  R  A  S  R  F  S  P  T  S  S  G  E  S  S  V  G  C  S  E  I  L  V  A  R  I  *  G  A  A  D  G  G  N  A  Q  G  N  E  V  P  G  S  G  G  A  *  D  N  Q  N  Q  S  S  G  D  N  G  A  T  Y  C  R  R  R  I  P  V  N  R  R  L  R  Y  P  K  R  N  N  C  V  P  V  G  F  *  F  I  I  S  G  F  S  *  T  G  E  I  *  T  G  P  V  H  G  G  E  T  R  G  A  G  L  Q  K  E  L  S  S  I  W  C  W  A  P  C  V  C  R  P  E  V  C  Y  *  P  L  D  A  F  H  C  Y  V  Y  G  S  D  *  F  Q  E  T  Q  N  R  R  L  R  *  H  L  V  Y  S  N  H  C  S  K  G  *  L  Q  S  F  P  C  T  Q  V  H  T  M  I  A  H  F  L  K  K  *  S  I  W  P  H  F  N  Y  F  S  I  F  F  L  V  F  F  F  N  F  K  F  *  C  V  N  T  R  N  L  I  K  *  S  R  F  F  *  N  V  C  W  S  N  *  W  S  D  K  Y  L  G  L  C  G  R  L  I  K  E  I  P  F  </second_frame>
            <third_frame>   N  *  F  V  F  P  L  S  L  Y  R  I  Y  H  T  F  S  S  S  K  S  *  N  Y  L  *  R  G  *  M  R  L  *  N  F  C  L  I  *  F  R  F  G  L  F  G  F  F  F  F  H  V  F  Q  L  V  A  Q  F  S  L  Y  F  F  S  F  G  F  L  V  *  P  T  N  P  T  F  I  Y  *  P  F  F  L  L  P  S  Y  Y  I  N  P  N  H  T  I  Q  I  H  I  I  E  Q  F  P  V  E  G  *  G  R  R  R  R  R  R  E  L  Y  C  T  V  L  H  H  M  A  S  I  W  G  L  L  S  P  W  I  P  Y  F  I  S  F  I  A  F  L  L  L  L  E  Q  I  S  Y  I  K  K  K  R  F  L  P  G  P  T  L  V  F  P  F  L  G  N  V  I  P  L  V  T  N  P  T  K  F  W  D  L  Q  S  A  L  A  K  S  T  S  H  G  F  S  V  N  Y  I  I  G  K  F  I  L  Y  I  H  S  T  D  L  S  H  K  V  F  A  N  V  R  P  D  A  F  H  L  I  G  H  P  F  G  K  K  L  F  G  E  H  N  L  I  Y  M  F  G  Q  E  H  K  D  L  R  R  R  I  A  P  N  F  T  P  K  A  L  G  T  Y  T  D  I  Q  Q  R  I  I  I  K  H  F  K  S  W  L  D  E  A  S  K  S  P  N  T  P  I  P  L  R  L  L  C  R  D  M  N  L  D  T  S  Q  T  V  F  V  G  P  Y  L  D  G  E  S  R  K  R  F  N  V  D  Y  N  Y  F  N  V  G  L  M  K  L  P  V  D  L  P  G  F  A  F  R  N  A  R  L  A  V  G  R  L  V  D  T  L  S  V  C  V  E  Q  S  L  N  K  M  K  N  E  E  E  P  T  C  L  I  D  F  W  M  Q  E  N  L  R  E  I  N  E  A  K  I  N  G  L  Q  K  P  F  Q  Y  S  N  K  E  L  G  G  Y  L  F  D  F  L  F  A  A  Q  D  A  S  T  S  A  L  L  W  A  I  V  L  L  D  S  H  P  Q  V  L  E  K  V  R  S  D  V  A  R  F  W  S  P  E  S  E  E  P  L  T  A  E  M  L  R  E  M  K  Y  L  E  A  V  A  R  E  I  I  R  I  R  A  P  A  T  M  V  P  H  I  A  G  E  E  F  R  L  T  E  D  Y  V  I  P  K  G  T  I  V  F  P  S  V  F  D  S  S  F  Q  G  F  P  E  P  E  K  F  E  P  D  R  F  M  E  E  R  Q  E  E  R  V  Y  K  K  N  F  L  A  F  G  A  G  P  H  A  C  V  G  Q  K  Y  A  I  N  H  L  M  L  F  I  A  M  F  T  A  L  I  D  F  K  R  H  K  T  D  G  C  D  D  I  S  Y  I  P  T  I  A  P  K  D  D  C  K  V  F  L  A  H  R  C  T  R  *  L  P  I  F  *  K  N  N  Q  F  G  P  I  L  I  I  F  L  F  F  S  L  F  F  F  L  I  L  N  F  S  V  *  I  H  V  T  *  S  N  D  Q  D  S  F  K  M  F  V  G  A  I  D  G  V  T  N  I  W  D  C  V  E  D  *  *  K  K  F  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0104N06.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38912" stop="37359"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1551</number_coding_nucleotides>
                  <number_encoded_amino_acids>517</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRRRRRRELYCTVLHHMASIWGLLSPWIPYFISFIAFLLLLEQISYIKKKRFLPGPTLVFPFLGNVIPLVTNPTKFWDLQSALAKSTSHGFSVNYIIGKFILYIHSTDLSHKVFANVRPDAFHLIGHPFGKKLFGEHNLIYMFGQEHKDLRRRIAPNFTPKALGTYTDIQQRIIIKHFKSWLDEASKSPNTPIPLRLLCRDMNLDTSQTVFVGPYLDGESRKRFNVDYNYFNVGLMKLPVDLPGFAFRNARLAVGRLVDTLSVCVEQSLNKMKNEEEPTCLIDFWMQENLREINEAKINGLQKPFQYSNKELGGYLFDFLFAAQDASTSALLWAIVLLDSHPQVLEKVRSDVARFWSPESEEPLTAEMLREMKYLEAVAREIIRIRAPATMVPHIAGEEFRLTEDYVIPKGTIVFPSVFDSSFQGFPEPEKFEPDRFMEERQEERVYKKNFLAFGAGPHACVGQKYAINHLMLFIAMFTALIDFKRHKTDGCDDISYIPTIAPKDDCKVFLAHRCTR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0104N06.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39240" stop="38962"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLIRFSAFLISNIPHFLLLQKLKLPVKRLNETLKFLPNIIQIWSVWFFLLPRFPTCCTIFTIFFLFRFSCLTHQSNLHILTLLPSSILLYKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="37700" PGL_stop="38034"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37700" e_stop="38034"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="37700" e_stop="38034" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37700" stop="38034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593981" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCGGTTAACCGGAATTCTTCGCCGGCAATATGTGGCACCATTGTCGCCGGAGCTCTGATTCTGATTATCTCACGCGCCACCGCTTCCAGGTACTTCATTTCCCTGAGCATTTCCGCCGTCAGCGGCTCCTCAGATTCTGGCGACCAGAATCTCGCTACATCCGACCGAACTTTCTCCAGAACTTGTGGGTGAGAATCTAGAAGCACGATTGCCCATAACAGAGCAGAAGTAGAAGCATCTTGAGCAGCAAAGAGGAAGTCGAACAGGTAACCTCCAAGTTCCTTGTTACTGTACTGAAATGGCTTTTGTAATCCATTGATCTTAGCTTCGTTA</gDNA_template>
            <first_frame> L  R  L  T  G  I  L  R  R  Q  Y  V  A  P  L  S  P  E  L  *  F  *  L  S  H  A  P  P  L  P  G  T  S  F  P  *  A  F  P  P  S  A  A  P  Q  I  L  A  T  R  I  S  L  H  P  T  E  L  S  P  E  L  V  G  E  N  L  E  A  R  L  P  I  T  E  Q  K  *  K  H  L  E  Q  Q  R  G  S  R  T  G  N  L  Q  V  P  C  Y  C  T  E  M  A  F  V  I  H  *  S  *  L  R   </first_frame>
            <second_frame>  F  G  *  P  E  F  F  A  G  N  M  W  H  H  C  R  R  S  S  D  S  D  Y  L  T  R  H  R  F  Q  V  L  H  F  P  E  H  F  R  R  Q  R  L  L  R  F  W  R  P  E  S  R  Y  I  R  P  N  F  L  Q  N  L  W  V  R  I  *  K  H  D  C  P  *  Q  S  R  S  R  S  I  L  S  S  K  E  E  V  E  Q  V  T  S  K  F  L  V  T  V  L  K  W  L  L  *  S  I  D  L  S  F  V  </second_frame>
            <third_frame>   S  V  N  R  N  S  S  P  A  I  C  G  T  I  V  A  G  A  L  I  L  I  I  S  R  A  T  A  S  R  Y  F  I  S  L  S  I  S  A  V  S  G  S  S  D  S  G  D  Q  N  L  A  T  S  D  R  T  F  S  R  T  C  G  *  E  S  R  S  T  I  A  H  N  R  A  E  V  E  A  S  *  A  A  K  R  K  S  N  R  *  P  P  S  S  L  L  L  Y  *  N  G  F  C  N  P  L  I  L  A  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0104N06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="43109" PGL_stop="40129"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43109" e_stop="43020"/>
            <exon e_start="42217" e_stop="42098"/>
            <exon e_start="42012" e_stop="41967"/>
            <exon e_start="40775" e_stop="40690"/>
            <exon e_start="40587" e_stop="40458"/>
            <exon e_start="40370" e_stop="40130"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43109" e_stop="43020" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="43019" i_stop="42218" i_length="802"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42217" e_stop="42098" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="0.995">
            <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42012" e_stop="41967" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40775" e_stop="40690" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.922" acc_prob="0.996">
            <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40587" e_stop="40458" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.957" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40457" i_stop="40371" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="40370" e_stop="40130" e_length="241"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43109" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40458"/>
              <exon start="40370" stop="40138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43108" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40458"/>
              <exon start="40370" stop="40319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43104" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40458"/>
              <exon start="40370" stop="40138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43104" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40458"/>
              <exon start="40370" stop="40332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43095" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43086" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40458"/>
              <exon start="40370" stop="40141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43072" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40458"/>
              <exon start="40370" stop="40141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43072" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43070" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40458"/>
              <exon start="40370" stop="40141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43069" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40458"/>
              <exon start="40370" stop="40324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43067" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43067" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43061" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40458"/>
              <exon start="40370" stop="40130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43060" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40458"/>
              <exon start="40370" stop="40319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43060" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40458"/>
              <exon start="40370" stop="40324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43055" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43044" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40458"/>
              <exon start="40370" stop="40141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40458"/>
              <exon start="40370" stop="40141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40458"/>
              <exon start="40370" stop="40152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40458"/>
              <exon start="40370" stop="40292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40458"/>
              <exon start="40370" stop="40302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40458"/>
              <exon start="40370" stop="40325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42189" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40458"/>
              <exon start="40370" stop="40282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42186" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42128" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAGCTGAATCCAAATCGCCTTCTCTGAACTCAATCTCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATG : TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT : CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG : GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAG : GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAG : AGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGACGAAGGCTGTAAGGCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACTATCATTCTGTT</gDNA_template>
            <first_frame> C  S  *  I  Q  I  A  F  S  E  L  N  L  L  R  I  Q  H  R  R  F  S  R  S  N  K  N  N  T  M  :  S  K  R  R  T  R  E  P  K  E  E  T  V  T  L  G  P  S  V  R  E  G  E  L  V  F  G  V  A  H  I  F  A  S  F  N  D  T  F  I  :  H  V  T  D  L  S  G  R  E  T  M  V  R  I  T   : G  G  M  K  V  K  A  D  R  D  E  S  S  P  Y  A  A  M  L  A  A  Q  D  V  S  Q  R  C  K  :  E  L  G  I  N  A  L  H  I  K  L  R  A  T  G  G  N  K  T  K  T  P  G  P  G  A  Q  S  A  L  R  A  L  A  R  S  G  M  K  I  G  R  I   : E  D  V  T  P  I  P  T  D  S  T  R  R  K  G  G  R  R  G  R  R  L  *  G  L  L  R  M  L  Q  V  L  F  L  I  W  T  *  I  L  F  T  S  T  M  *  F  Y  *  C  W  L  C  L  *  I  L  L  L  F  S  W  L  N  L  *  N  N  Y  E  K  Y  E  F  *  P  T  I  I  L   </first_frame>
            <second_frame>  A  A  E  S  K  S  P  S  L  N  S  I  S  S  V  F  N  I  A  V  S  A  E  V  T  K  T  T  P  C :   R  R  G  G  L  G  S  Q  R  K  R  L  L  L  L  V  L  L  *  E  R  E  S  L  F  L  V  S  L  T  F  L  H  H  S  M  T  L  S  F :   T  *  L  I  C  L  D  G  K  Q  W  F  V  L  L  :  V  E  *  R  S  K  L  I  G  M  N  L  P  H  M  L  L  C  L  P  H  K  M  F  L  R  D  A  R :   S  L  A  S  M  H  F  T  S  S  F  E  P  L  V  E  T  R  P  K  H  L  D  L  V  L  S  L  L  S  G  L  L  L  V  Q  E  *  K  L  V  V  *  :  R  T  *  L  Q  F  L  L  I  A  L  A  E  R  V  V  G  E  D  E  G  C  K  A  C  *  E  C  C  R  C  Y  F  *  Y  G  L  E  S  Y  S  P  L  L  C  S  S  T  D  V  G  F  A  Y  K  F  C  F  F  F  R  G  *  I  C  E  T  I  M  R  N  M  N  F  S  L  L  S  F  C  </second_frame>
            <third_frame>   Q  L  N  P  N  R  L  L  *  T  Q  S  P  P  Y  S  T  S  P  F  Q  Q  K  *  Q  K  Q  H  H   : V  E  E  E  D  *  G  A  K  G  R  D  C  Y  S  W  S  F  C  E  R  G  R  A  C  F  W  C  R  S  H  F  C  I  I  Q  *  H  F  H   : S  R  D  *  F  V  W  T  G  N  N  G  S  Y  Y  W :   W  N  E  G  Q  S  *  *  G  *  I  F  P  I  C  C  Y  A  C  R  T  R  C  F  S  E  M  Q   : G  A  W  H  Q  C  T  S  H  Q  A  S  S  H  W  W  K  Q  D  Q  N  T  W  T  W  C  S  V  C  S  Q  G  S  C  S  F  R  N  E  N  W  S  Y  R :   G  R  D  S  N  S  Y  *  *  H  S  Q  K  G  W  *  E  R  T  K  A  V  R  L  V  E  N  A  A  G  V  I  F  D  M  D  L  N  L  I  H  L  Y  Y  V  V  L  L  M  L  A  L  P  I  N  F  A  S  F  F  V  V  K  F  V  K  Q  L  *  E  I  *  I  L  A  Y  Y  H  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0104N06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43100" stop="43020"/>
                    <exon start="42217" stop="42098"/>
                    <exon start="42012" stop="41967"/>
                    <exon start="40775" stop="40690"/>
                    <exon start="40587" stop="40458"/>
                    <exon start="40370" stop="40303"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQIAFSELNLLRIQHRRFSRSNKNNTMSKRRTREPKEETVTLGPSVREGELVFGVAHIFASFNDTFIHVTDLSGRETMVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGINALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43095" e_stop="43020"/>
            <exon e_start="42217" e_stop="42098"/>
            <exon e_start="42012" e_stop="41967"/>
            <exon e_start="40775" e_stop="40690"/>
            <exon e_start="40587" e_stop="40354"/>
            <exon e_start="40301" e_stop="40129"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.739"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43095" e_stop="43020" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="43019" i_stop="42218" i_length="802"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42217" e_stop="42098" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="0.995">
            <gDNA_intron_boundary i_start="42097" i_stop="42013" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42012" e_stop="41967" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="41966" i_stop="40776" i_length="1191"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40775" e_stop="40690" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.922" acc_prob="0.996">
            <gDNA_intron_boundary i_start="40689" i_stop="40588" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="0.739">
            <gDNA_exon_boundary e_start="40587" e_stop="40354" e_length="234"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40353" i_stop="40302" i_length="52"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="40301" e_stop="40129" e_length="173"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43095" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43076" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40354"/>
              <exon start="40301" stop="40141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43073" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40354"/>
              <exon start="40301" stop="40129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43072" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40354"/>
              <exon start="40301" stop="40147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43072" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43067" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43067" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43055" stop="43020"/>
              <exon start="42217" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42186" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42128" stop="42098"/>
              <exon start="42012" stop="41967"/>
              <exon start="40775" stop="40690"/>
              <exon start="40587" stop="40533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCGCCTTCTCTGAACTCAATCTCCTCCGTATTCAACATCGCCGTTTCAGCAGAAGTAACAAAAACAACACCATG : TCGAAGAGGAGGACTAGGGAGCCAAAGGAAGAGACTGTTACTCTTGGTCCTTCTGTGAGAGAGGGAGAGCTTGTTTTTGGTGTCGCTCACATTTTTGCATCATTCAATGACACTTTCATT : CACGTGACTGATTTGTCTGGACGGGAAACAATGGTTCGTATTACTG : GTGGAATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATATGCTGCTATGCTTGCCGCACAAGATGTTTCTCAGAGATGCAAG : GAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGTCAGCTAAGCCTTGTGAGAAACACTTCAATGTTGATGATCACATAACTTTGTAAATTATCTTGCAGAGGACGTGACTCCAATT : GCTTGTTGAGAATGCTGCAGGTGTTATTTTTGATATGGACTTGAATCTTATTCACCTCTACTATGTAGTTCTACTGATGTTGGCTTTGCCTATAAATTTTGCTTCTTTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACTATCATTCTGTTA</gDNA_template>
            <first_frame> N  R  L  L  *  T  Q  S  P  P  Y  S  T  S  P  F  Q  Q  K  *  Q  K  Q  H  H   : V  E  E  E  D  *  G  A  K  G  R  D  C  Y  S  W  S  F  C  E  R  G  R  A  C  F  W  C  R  S  H  F  C  I  I  Q  *  H  F  H   : S  R  D  *  F  V  W  T  G  N  N  G  S  Y  Y  W :   W  N  E  G  Q  S  *  *  G  *  I  F  P  I  C  C  Y  A  C  R  T  R  C  F  S  E  M  Q   : G  A  W  H  Q  C  T  S  H  Q  A  S  S  H  W  W  K  Q  D  Q  N  T  W  T  W  C  S  V  C  S  Q  G  S  C  S  F  R  N  E  N  W  S  Y  R  *  *  L  A  F  V  C  Q  L  S  L  V  R  N  T  S  M  L  M  I  T  *  L  C  K  L  S  C  R  G  R  D  S  N   : C  L  L  R  M  L  Q  V  L  F  L  I  W  T  *  I  L  F  T  S  T  M  *  F  Y  *  C  W  L  C  L  *  I  L  L  L  F  S  W  L  N  L  *  N  N  Y  E  K  Y  E  F  *  P  T  I  I  L  L </first_frame>
            <second_frame>  I  A  F  S  E  L  N  L  L  R  I  Q  H  R  R  F  S  R  S  N  K  N  N  T  M  :  S  K  R  R  T  R  E  P  K  E  E  T  V  T  L  G  P  S  V  R  E  G  E  L  V  F  G  V  A  H  I  F  A  S  F  N  D  T  F  I  :  H  V  T  D  L  S  G  R  E  T  M  V  R  I  T   : G  G  M  K  V  K  A  D  R  D  E  S  S  P  Y  A  A  M  L  A  A  Q  D  V  S  Q  R  C  K  :  E  L  G  I  N  A  L  H  I  K  L  R  A  T  G  G  N  K  T  K  T  P  G  P  G  A  Q  S  A  L  R  A  L  A  R  S  G  M  K  I  G  R  I  G  N  D  *  L  L  C  V  S  *  A  L  *  E  T  L  Q  C  *  *  S  H  N  F  V  N  Y  L  A  E  D  V  T  P  I  :  A  C  *  E  C  C  R  C  Y  F  *  Y  G  L  E  S  Y  S  P  L  L  C  S  S  T  D  V  G  F  A  Y  K  F  C  F  F  F  R  G  *  I  C  E  T  I  M  R  N  M  N  F  S  L  L  S  F  C   </second_frame>
            <third_frame>   S  P  S  L  N  S  I  S  S  V  F  N  I  A  V  S  A  E  V  T  K  T  T  P  C :   R  R  G  G  L  G  S  Q  R  K  R  L  L  L  L  V  L  L  *  E  R  E  S  L  F  L  V  S  L  T  F  L  H  H  S  M  T  L  S  F :   T  *  L  I  C  L  D  G  K  Q  W  F  V  L  L  :  V  E  *  R  S  K  L  I  G  M  N  L  P  H  M  L  L  C  L  P  H  K  M  F  L  R  D  A  R :   S  L  A  S  M  H  F  T  S  S  F  E  P  L  V  E  T  R  P  K  H  L  D  L  V  L  S  L  L  S  G  L  L  L  V  Q  E  *  K  L  V  V  *  V  M  I  S  F  C  V  S  A  K  P  C  E  K  H  F  N  V  D  D  H  I  T  L  *  I  I  L  Q  R  T  *  L  Q  L :   L  V  E  N  A  A  G  V  I  F  D  M  D  L  N  L  I  H  L  Y  Y  V  V  L  L  M  L  A  L  P  I  N  F  A  S  F  F  V  V  K  F  V  K  Q  L  *  E  I  *  I  L  A  Y  Y  H  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0104N06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43094" stop="43020"/>
                    <exon start="42217" stop="42098"/>
                    <exon start="42012" stop="41967"/>
                    <exon start="40775" stop="40690"/>
                    <exon start="40587" stop="40447"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAFSELNLLRIQHRRFSRSNKNNTMSKRRTREPKEETVTLGPSVREGELVFGVAHIFASFNDTFIHVTDLSGRETMVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGINALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIGND*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="40600" e_stop="40344"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="40600" e_stop="40344" e_length="257"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40600" stop="40344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274353" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTGAGTACAGGAGCTTGGCATCAATGCACTTCACATCAAGCTTCGAGCCACTGGTGGAAACAAGACCAAAACACCTGGACCTGGTGCTCAGTCTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGGTAATGATTAGCTTTTGTGTGTCAGCTAAGCCTTGTGAGAAACACTTCAATGTTGATGATCACATAACTTTGTAAATTATCTTGCAGAGGACGTGACTCCAATTCCTACTGATA</gDNA_template>
            <first_frame> F  L  S  T  G  A  W  H  Q  C  T  S  H  Q  A  S  S  H  W  W  K  Q  D  Q  N  T  W  T  W  C  S  V  C  S  Q  G  S  C  S  F  R  N  E  N  W  S  Y  R  *  *  L  A  F  V  C  Q  L  S  L  V  R  N  T  S  M  L  M  I  T  *  L  C  K  L  S  C  R  G  R  D  S  N  S  Y  *   </first_frame>
            <second_frame>  F  *  V  Q  E  L  G  I  N  A  L  H  I  K  L  R  A  T  G  G  N  K  T  K  T  P  G  P  G  A  Q  S  A  L  R  A  L  A  R  S  G  M  K  I  G  R  I  G  N  D  *  L  L  C  V  S  *  A  L  *  E  T  L  Q  C  *  *  S  H  N  F  V  N  Y  L  A  E  D  V  T  P  I  P  T  D  </second_frame>
            <third_frame>   F  E  Y  R  S  L  A  S  M  H  F  T  S  S  F  E  P  L  V  E  T  R  P  K  H  L  D  L  V  L  S  L  L  S  G  L  L  L  V  Q  E  *  K  L  V  V  *  V  M  I  S  F  C  V  S  A  K  P  C  E  K  H  F  N  V  D  D  H  I  T  L  *  I  I  L  Q  R  T  *  L  Q  F  L  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0104N06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="48360" PGL_stop="43254"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48360" e_stop="48035"/>
            <exon e_start="47917" e_stop="47843"/>
            <exon e_start="47164" e_stop="46947"/>
            <exon e_start="46749" e_stop="46302"/>
            <exon e_start="46209" e_stop="46145"/>
            <exon e_start="45448" e_stop="45255"/>
            <exon e_start="45046" e_stop="44838"/>
            <exon e_start="43956" e_stop="43477"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.857" e_score="0.990"/>
          <exon-intron don_prob="0.967" acc_prob="1.000" e_score="0.973"/>
          <exon-intron don_prob="0.999" acc_prob="0.964" e_score="0.986"/>
          <exon-intron don_prob="1.000" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.780" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="48360" e_stop="48035" e_length="326"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.857">
            <gDNA_intron_boundary i_start="48034" i_stop="47918" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="47917" e_stop="47843" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="1.000">
            <gDNA_intron_boundary i_start="47842" i_stop="47165" i_length="678"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="47164" e_stop="46947" e_length="218"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.964">
            <gDNA_intron_boundary i_start="46946" i_stop="46750" i_length="197"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46749" e_stop="46302" e_length="448"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.897">
            <gDNA_intron_boundary i_start="46301" i_stop="46210" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46209" e_stop="46145" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="0.964" acc_prob="0.998">
            <gDNA_intron_boundary i_start="46144" i_stop="45449" i_length="696"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45448" e_stop="45255" e_length="194"/>
          </exon>
          <intron i_serial="6" don_prob="0.780" acc_prob="0.987">
            <gDNA_intron_boundary i_start="45254" i_stop="45047" i_length="208"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="45046" e_stop="44838" e_length="209"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.950">
            <gDNA_intron_boundary i_start="44837" i_stop="43957" i_length="881"/>
          </intron>
          <exon e_serial="8" e_score="0.985">
            <gDNA_exon_boundary e_start="43956" e_stop="43477" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48360" stop="48035"/>
              <exon start="47917" stop="47843"/>
              <exon start="47164" stop="46947"/>
              <exon start="46749" stop="46563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546020" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48334" stop="48035"/>
              <exon start="47917" stop="47843"/>
              <exon start="47164" stop="46972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546027" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46618" stop="46302"/>
              <exon start="46209" stop="46145"/>
              <exon start="45448" stop="45255"/>
              <exon start="45046" stop="45030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45416" stop="45255"/>
              <exon start="45046" stop="44838"/>
              <exon start="43956" stop="43571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45386" stop="45255"/>
              <exon start="45046" stop="44838"/>
              <exon start="43956" stop="43477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262222" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45326" stop="45255"/>
              <exon start="45046" stop="44838"/>
              <exon start="43956" stop="43665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTATTTTTTTCCCTCTTTCCCCATTCTTCTTTGAACTCAGTATATTCCTTTATTCTTCTCTCTTTCTGCAAAATCAAACCAATTTTCATACATATGTTTGTTTAATGGAGTTGACGTTCATGTGAATCGGATAATCCTTTTGATTTTACACTTTGAAAAATGTTAGTCATGCGATCTCAATCTTGTGGTTCAAATTTGGATTTGAATTCTGATTTCTATCGACTTGGGGTTTCTCAATTTCGAAAAGGGTCTCTGAATCTGAAATTTCAGCGTTTATTGATCAATTTTCATCATCTCCGATTAAGCTCTCATTTTCCTGTGAAG : ATCCGTAGATCAAGTGCTAGGCGTTATGGGTTCTGTTTGCCTCCTAGGCTTTTTCAAGTTCGAGCAATGGATGAT : GATGTTGGGGTCTCTTCGTTTCATGACTGGGGAGATAATAATGGAGCAGTTGAATATAGGTTCTCATCAAGTGAAGGTGAAGACAGTGATGGAGATATTTTACTACAGCCAATCACGGATGTTGATTTGCCTACCTCCAAGGAGCAGCTTTATTCTGCTGACGACACCGTAAGAACTCACCAGCTAACAATGCTTGGCAGAGCGTACAAGAGAAAAAG : GATAAAATATGGCATTCTAAACAACATAGGTCTCATAATGTTCTCGACGGTGCTTCTGTCTCTTGTGGATTGCTGTGCATGGAAAATTGTTAGATTGCCACTGGCTCCACTTTACCTAATGCGTCCCTTTCTCATCTCCGCAGTGGCAGTGTCTTGTGTAGGTTATGTCTGTGTCCCGTTATTTCGTAGTTTGAAACTCCACTCTGTAATCAGGAAGGAGGGGCCTGCTCGGCACTCTAGTAAGAAAGGCACTGCTACAATGGGCGGATTGTATTTTATTCCAATTGGAGTAATTGTTGCTGAAATTATTGTTGGATTTTCTTCTCTGGAAGTTCTTGGAGCTTCTGCAGCAACTTTAACTTTTGCAGCAATTGGATTACTTGATGATTTGATAAGTATGAGGAATAATAATGTTGGCTTGTCTGCTCGATTTCGGATCATGTTGGAG : GTTGCTGCTGGGACATTTTTCTCCTTTTGGCTGTATGCGTCGGACATATCGTCACCCTACAGCAT : GAAAACAGTGGTTCCCCTACCCGCGCCTCTTGGGCTCATATGCCTTGGAAGACTCTATCCTTTTTTAACTTCGTTTTGCTTTGCTTCCATGGCTAATGGAATTAATCTTACTGACGGTCTCGACGGATTGGCTGGAGGAACAGCCACATTGGCGTTCATTGCAATGGCTATTGCAGTGCTTCCTATATGTTCTG : AGCTTTCCATATTTGGAGCATCTATGGCAGGAGCCTGTGCAGGTTTTCTTCTGCACAACCGCTACAAAGCATCAATATTTATGGGTGATACAGGAGCTTTAGCCTTAGGGGGTGCTCTAGCTTCTATGGCTGCATGTACGGGGATGTTCTTTCCATTGTTCATCTCATCTGGTGTTTTTGTCCTCGAAGCACTATCAGTTATACTGCAG : GTTTCCTTCTTCAAGACAACGAAACACTTCCTAGGAACTGGACACCGCTTGTTTCGAATGGCACCATTACATCACCACCTTGAATTATGTGGAGTAAAAGAACCTGTCATTGTTGCTGGTGCATATGTTTTTTCTTGCATTTTGGCCTTGACTGCTGGATATGTGGGACTGGCTTCAGTATAACCTCACCTCATGAAGTTCAAGTCACTTCCTGCAAATTTTCTCTTTTGCGTTCAAACTTAGACAACAGATTGAAGAAACTGTTTTTTTTTTCCTTTCCAAAAAAAAAAATGTAGTTATTTTGATCTACCTCTGTAACTTAACTAGGAATAGTTGTTACTATCCAAATACTTGAGAATCGTAAAATAACCCTATTACTGGCTTCTTTGTATCGCCCGTCTCAAATTCGGATAAAGGAGAAAGATTATCGAGAATCAAATAGACATATATATATTTGATACACATTTTAAACATATAATT</gDNA_template>
            <first_frame> D  Y  F  F  P  S  F  P  I  L  L  *  T  Q  Y  I  P  L  F  F  S  L  S  A  K  S  N  Q  F  S  Y  I  C  L  F  N  G  V  D  V  H  V  N  R  I  I  L  L  I  L  H  F  E  K  C  *  S  C  D  L  N  L  V  V  Q  I  W  I  *  I  L  I  S  I  D  L  G  F  L  N  F  E  K  G  L  *  I  *  N  F  S  V  Y  *  S  I  F  I  I  S  D  *  A  L  I  F  L  *  R :   S  V  D  Q  V  L  G  V  M  G  S  V  C  L  L  G  F  F  K  F  E  Q  W  M  M :   M  L  G  S  L  R  F  M  T  G  E  I  I  M  E  Q  L  N  I  G  S  H  Q  V  K  V  K  T  V  M  E  I  F  Y  Y  S  Q  S  R  M  L  I  C  L  P  P  R  S  S  F  I  L  L  T  T  P  *  E  L  T  S  *  Q  C  L  A  E  R  T  R  E  K   : G  *  N  M  A  F  *  T  T  *  V  S  *  C  S  R  R  C  F  C  L  L  W  I  A  V  H  G  K  L  L  D  C  H  W  L  H  F  T  *  C  V  P  F  S  S  P  Q  W  Q  C  L  V  *  V  M  S  V  S  R  Y  F  V  V  *  N  S  T  L  *  S  G  R  R  G  L  L  G  T  L  V  R  K  A  L  L  Q  W  A  D  C  I  L  F  Q  L  E  *  L  L  L  K  L  L  L  D  F  L  L  W  K  F  L  E  L  L  Q  Q  L  *  L  L  Q  Q  L  D  Y  L  M  I  *  *  V  *  G  I  I  M  L  A  C  L  L  D  F  G  S  C  W  R :   L  L  L  G  H  F  S  P  F  G  C  M  R  R  T  Y  R  H  P  T  A   : *  K  Q  W  F  P  Y  P  R  L  L  G  S  Y  A  L  E  D  S  I  L  F  *  L  R  F  A  L  L  P  W  L  M  E  L  I  L  L  T  V  S  T  D  W  L  E  E  Q  P  H  W  R  S  L  Q  W  L  L  Q  C  F  L  Y  V  L  :  S  F  P  Y  L  E  H  L  W  Q  E  P  V  Q  V  F  F  C  T  T  A  T  K  H  Q  Y  L  W  V  I  Q  E  L  *  P  *  G  V  L  *  L  L  W  L  H  V  R  G  C  S  F  H  C  S  S  H  L  V  F  L  S  S  K  H  Y  Q  L  Y  C  R :   F  P  S  S  R  Q  R  N  T  S  *  E  L  D  T  A  C  F  E  W  H  H  Y  I  T  T  L  N  Y  V  E  *  K  N  L  S  L  L  L  V  H  M  F  F  L  A  F  W  P  *  L  L  D  M  W  D  W  L  Q  Y  N  L  T  S  *  S  S  S  H  F  L  Q  I  F  S  F  A  F  K  L  R  Q  Q  I  E  E  T  V  F  F  F  L  S  K  K  K  N  V  V  I  L  I  Y  L  C  N  L  T  R  N  S  C  Y  Y  P  N  T  *  E  S  *  N  N  P  I  T  G  F  F  V  S  P  V  S  N  S  D  K  G  E  R  L  S  R  I  K  *  T  Y  I  Y  L  I  H  I  L  N  I  *   </first_frame>
            <second_frame>  I  I  F  F  P  L  S  P  F  F  F  E  L  S  I  F  L  Y  S  S  L  F  L  Q  N  Q  T  N  F  H  T  Y  V  C  L  M  E  L  T  F  M  *  I  G  *  S  F  *  F  Y  T  L  K  N  V  S  H  A  I  S  I  L  W  F  K  F  G  F  E  F  *  F  L  S  T  W  G  F  S  I  S  K  R  V  S  E  S  E  I  S  A  F  I  D  Q  F  S  S  S  P  I  K  L  S  F  S  C  E   : D  P  *  I  K  C  *  A  L  W  V  L  F  A  S  *  A  F  S  S  S  S  N  G  *   : *  C  W  G  L  F  V  S  *  L  G  R  *  *  W  S  S  *  I  *  V  L  I  K  *  R  *  R  Q  *  W  R  Y  F  T  T  A  N  H  G  C  *  F  A  Y  L  Q  G  A  A  L  F  C  *  R  H  R  K  N  S  P  A  N  N  A  W  Q  S  V  Q  E  K  K  :  D  K  I  W  H  S  K  Q  H  R  S  H  N  V  L  D  G  A  S  V  S  C  G  L  L  C  M  E  N  C  *  I  A  T  G  S  T  L  P  N  A  S  L  S  H  L  R  S  G  S  V  L  C  R  L  C  L  C  P  V  I  S  *  F  E  T  P  L  C  N  Q  E  G  G  A  C  S  A  L  *  *  E  R  H  C  Y  N  G  R  I  V  F  Y  S  N  W  S  N  C  C  *  N  Y  C  W  I  F  F  S  G  S  S  W  S  F  C  S  N  F  N  F  C  S  N  W  I  T  *  *  F  D  K  Y  E  E  *  *  C  W  L  V  C  S  I  S  D  H  V  G   : G  C  C  W  D  I  F  L  L  L  A  V  C  V  G  H  I  V  T  L  Q  H  :  E  N  S  G  S  P  T  R  A  S  W  A  H  M  P  W  K  T  L  S  F  F  N  F  V  L  L  C  F  H  G  *  W  N  *  S  Y  *  R  S  R  R  I  G  W  R  N  S  H  I  G  V  H  C  N  G  Y  C  S  A  S  Y  M  F  * :   A  F  H  I  W  S  I  Y  G  R  S  L  C  R  F  S  S  A  Q  P  L  Q  S  I  N  I  Y  G  *  Y  R  S  F  S  L  R  G  C  S  S  F  Y  G  C  M  Y  G  D  V  L  S  I  V  H  L  I  W  C  F  C  P  R  S  T  I  S  Y  T  A   : G  F  L  L  Q  D  N  E  T  L  P  R  N  W  T  P  L  V  S  N  G  T  I  T  S  P  P  *  I  M  W  S  K  R  T  C  H  C  C  W  C  I  C  F  F  L  H  F  G  L  D  C  W  I  C  G  T  G  F  S  I  T  S  P  H  E  V  Q  V  T  S  C  K  F  S  L  L  R  S  N  L  D  N  R  L  K  K  L  F  F  F  S  F  P  K  K  K  M  *  L  F  *  S  T  S  V  T  *  L  G  I  V  V  T  I  Q  I  L  E  N  R  K  I  T  L  L  L  A  S  L  Y  R  P  S  Q  I  R  I  K  E  K  D  Y  R  E  S  N  R  H  I  Y  I  *  Y  T  F  *  T  Y  N  </second_frame>
            <third_frame>   L  F  F  S  L  F  P  H  S  S  L  N  S  V  Y  S  F  I  L  L  S  F  C  K  I  K  P  I  F  I  H  M  F  V  *  W  S  *  R  S  C  E  S  D  N  P  F  D  F  T  L  *  K  M  L  V  M  R  S  Q  S  C  G  S  N  L  D  L  N  S  D  F  Y  R  L  G  V  S  Q  F  R  K  G  S  L  N  L  K  F  Q  R  L  L  I  N  F  H  H  L  R  L  S  S  H  F  P  V  K  :  I  R  R  S  S  A  R  R  Y  G  F  C  L  P  P  R  L  F  Q  V  R  A  M  D  D  :  D  V  G  V  S  S  F  H  D  W  G  D  N  N  G  A  V  E  Y  R  F  S  S  S  E  G  E  D  S  D  G  D  I  L  L  Q  P  I  T  D  V  D  L  P  T  S  K  E  Q  L  Y  S  A  D  D  T  V  R  T  H  Q  L  T  M  L  G  R  A  Y  K  R  K  R :   I  K  Y  G  I  L  N  N  I  G  L  I  M  F  S  T  V  L  L  S  L  V  D  C  C  A  W  K  I  V  R  L  P  L  A  P  L  Y  L  M  R  P  F  L  I  S  A  V  A  V  S  C  V  G  Y  V  C  V  P  L  F  R  S  L  K  L  H  S  V  I  R  K  E  G  P  A  R  H  S  S  K  K  G  T  A  T  M  G  G  L  Y  F  I  P  I  G  V  I  V  A  E  I  I  V  G  F  S  S  L  E  V  L  G  A  S  A  A  T  L  T  F  A  A  I  G  L  L  D  D  L  I  S  M  R  N  N  N  V  G  L  S  A  R  F  R  I  M  L  E  :  V  A  A  G  T  F  F  S  F  W  L  Y  A  S  D  I  S  S  P  Y  S  M :   K  T  V  V  P  L  P  A  P  L  G  L  I  C  L  G  R  L  Y  P  F  L  T  S  F  C  F  A  S  M  A  N  G  I  N  L  T  D  G  L  D  G  L  A  G  G  T  A  T  L  A  F  I  A  M  A  I  A  V  L  P  I  C  S   : E  L  S  I  F  G  A  S  M  A  G  A  C  A  G  F  L  L  H  N  R  Y  K  A  S  I  F  M  G  D  T  G  A  L  A  L  G  G  A  L  A  S  M  A  A  C  T  G  M  F  F  P  L  F  I  S  S  G  V  F  V  L  E  A  L  S  V  I  L  Q  :  V  S  F  F  K  T  T  K  H  F  L  G  T  G  H  R  L  F  R  M  A  P  L  H  H  H  L  E  L  C  G  V  K  E  P  V  I  V  A  G  A  Y  V  F  S  C  I  L  A  L  T  A  G  Y  V  G  L  A  S  V  *  P  H  L  M  K  F  K  S  L  P  A  N  F  L  F  C  V  Q  T  *  T  T  D  *  R  N  C  F  F  F  P  F  Q  K  K  K  C  S  Y  F  D  L  P  L  *  L  N  *  E  *  L  L  L  S  K  Y  L  R  I  V  K  *  P  Y  Y  W  L  L  C  I  A  R  L  K  F  G  *  R  R  K  I  I  E  N  Q  I  D  I  Y  I  F  D  T  H  F  K  H  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0104N06.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48202" stop="48035"/>
                    <exon start="47917" stop="47843"/>
                    <exon start="47164" stop="46947"/>
                    <exon start="46749" stop="46302"/>
                    <exon start="46209" stop="46145"/>
                    <exon start="45448" stop="45255"/>
                    <exon start="45046" stop="44838"/>
                    <exon start="43956" stop="43774"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1557</number_coding_nucleotides>
                  <number_encoded_amino_acids>519</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMLVMRSQSCGSNLDLNSDFYRLGVSQFRKGSLNLKFQRLLINFHHLRLSSHFPVKIRRSSARRYGFCLPPRLFQVRAMDDDVGVSSFHDWGDNNGAVEYRFSSSEGEDSDGDILLQPITDVDLPTSKEQLYSADDTVRTHQLTMLGRAYKRKRIKYGILNNIGLIMFSTVLLSLVDCCAWKIVRLPLAPLYLMRPFLISAVAVSCVGYVCVPLFRSLKLHSVIRKEGPARHSSKKGTATMGGLYFIPIGVIVAEIIVGFSSLEVLGASAATLTFAAIGLLDDLISMRNNNVGLSARFRIMLEVAAGTFFSFWLYASDISSPYSMKTVVPLPAPLGLICLGRLYPFLTSFCFASMANGINLTDGLDGLAGGTATLAFIAMAIAVLPICSELSIFGASMAGACAGFLLHNRYKASIFMGDTGALALGGALASMAACTGMFFPLFISSGVFVLEALSVILQVSFFKTTKHFLGTGHRLFRMAPLHHHLELCGVKEPVIVAGAYVFSCILALTAGYVGLASV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48360" e_stop="48035"/>
            <exon e_start="47917" e_stop="47843"/>
            <exon e_start="47164" e_stop="46947"/>
            <exon e_start="46749" e_stop="45955"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.857" e_score="0.990"/>
          <exon-intron don_prob="0.967" acc_prob="1.000" e_score="0.973"/>
          <exon-intron don_prob="0.999" acc_prob="0.964" e_score="0.986"/>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="48360" e_stop="48035" e_length="326"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.857">
            <gDNA_intron_boundary i_start="48034" i_stop="47918" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="47917" e_stop="47843" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="1.000">
            <gDNA_intron_boundary i_start="47842" i_stop="47165" i_length="678"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="47164" e_stop="46947" e_length="218"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.964">
            <gDNA_intron_boundary i_start="46946" i_stop="46750" i_length="197"/>
          </intron>
          <exon e_serial="4" e_score="0.946">
            <gDNA_exon_boundary e_start="46749" e_stop="45955" e_length="795"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48360" stop="48035"/>
              <exon start="47917" stop="47843"/>
              <exon start="47164" stop="46947"/>
              <exon start="46749" stop="46563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546020" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48334" stop="48035"/>
              <exon start="47917" stop="47843"/>
              <exon start="47164" stop="46972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546027" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46690" stop="45955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572779" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTATTTTTTTCCCTCTTTCCCCATTCTTCTTTGAACTCAGTATATTCCTTTATTCTTCTCTCTTTCTGCAAAATCAAACCAATTTTCATACATATGTTTGTTTAATGGAGTTGACGTTCATGTGAATCGGATAATCCTTTTGATTTTACACTTTGAAAAATGTTAGTCATGCGATCTCAATCTTGTGGTTCAAATTTGGATTTGAATTCTGATTTCTATCGACTTGGGGTTTCTCAATTTCGAAAAGGGTCTCTGAATCTGAAATTTCAGCGTTTATTGATCAATTTTCATCATCTCCGATTAAGCTCTCATTTTCCTGTGAAG : ATCCGTAGATCAAGTGCTAGGCGTTATGGGTTCTGTTTGCCTCCTAGGCTTTTTCAAGTTCGAGCAATGGATGAT : GATGTTGGGGTCTCTTCGTTTCATGACTGGGGAGATAATAATGGAGCAGTTGAATATAGGTTCTCATCAAGTGAAGGTGAAGACAGTGATGGAGATATTTTACTACAGCCAATCACGGATGTTGATTTGCCTACCTCCAAGGAGCAGCTTTATTCTGCTGACGACACCGTAAGAACTCACCAGCTAACAATGCTTGGCAGAGCGTACAAGAGAAAAAG : GATAAAATATGGCATTCTAAACAACATAGGTCTCATAATGTTCTCGACGGTGCTTCTGTCTCTTGTGGATTGCTGTGCATGGAAAATTGTTAGATTGCCACTGGCTCCACTTTACCTAATGCGTCCCTTTCTCATCTCCGCAGTGGCAGTGTCTTGTGTAGGTTATGTCTGTGTCCCGTTATTTCGTAGTTTGAAACTCCACTCTGTAATCAGGAAGGAGGGGCCTGCTCGGCACTCTAGTAAGAAAGGCACTGCTACAATGGGCGGATTGTATTTTATTCCAATTGGAGTAATTGTTGCTGAAATTATTGTTGGATTTTCTTCTCTGGAAGTTCTTGGAGCTTCTGCAGCAACTTTAACTTTTGCAGCAATTGGATTACTTGATGATTTGATAAGTATGAGGAATAATAATGTTGGCTTGTCTGCTCGATTTCGGATCATGTTGGAGGTGAGCCTTTTTTCCTTTTTTTGTACTTTTTGCAAATCATACTTTTGCTTCTTGTTTCTCTGGAGTTGATGGTACTCCTCTCTGGTACACAGGTTGCTGCTGGGACATTTTTCTCCTTTTGGCTGTATGCGTCGGACATATCGTCACCCTACAGCATGTATACATTCTTGTAACTAATTTCATCAACCTTTTTATGATGGTAACTCACAAATCTATTTTAAATTGACAACTAGTTTTTCTTATTCAGTATATCAACAAAATTTAAGCTCATGTATTCTCACCCTTCAAATTGATGTTTCTTAATGAACTGGATTAGTCCCTAGTTTGCCTTTGGTCCTAACAAATTT</gDNA_template>
            <first_frame> D  Y  F  F  P  S  F  P  I  L  L  *  T  Q  Y  I  P  L  F  F  S  L  S  A  K  S  N  Q  F  S  Y  I  C  L  F  N  G  V  D  V  H  V  N  R  I  I  L  L  I  L  H  F  E  K  C  *  S  C  D  L  N  L  V  V  Q  I  W  I  *  I  L  I  S  I  D  L  G  F  L  N  F  E  K  G  L  *  I  *  N  F  S  V  Y  *  S  I  F  I  I  S  D  *  A  L  I  F  L  *  R :   S  V  D  Q  V  L  G  V  M  G  S  V  C  L  L  G  F  F  K  F  E  Q  W  M  M :   M  L  G  S  L  R  F  M  T  G  E  I  I  M  E  Q  L  N  I  G  S  H  Q  V  K  V  K  T  V  M  E  I  F  Y  Y  S  Q  S  R  M  L  I  C  L  P  P  R  S  S  F  I  L  L  T  T  P  *  E  L  T  S  *  Q  C  L  A  E  R  T  R  E  K   : G  *  N  M  A  F  *  T  T  *  V  S  *  C  S  R  R  C  F  C  L  L  W  I  A  V  H  G  K  L  L  D  C  H  W  L  H  F  T  *  C  V  P  F  S  S  P  Q  W  Q  C  L  V  *  V  M  S  V  S  R  Y  F  V  V  *  N  S  T  L  *  S  G  R  R  G  L  L  G  T  L  V  R  K  A  L  L  Q  W  A  D  C  I  L  F  Q  L  E  *  L  L  L  K  L  L  L  D  F  L  L  W  K  F  L  E  L  L  Q  Q  L  *  L  L  Q  Q  L  D  Y  L  M  I  *  *  V  *  G  I  I  M  L  A  C  L  L  D  F  G  S  C  W  R  *  A  F  F  P  F  F  V  L  F  A  N  H  T  F  A  S  C  F  S  G  V  D  G  T  P  L  W  Y  T  G  C  C  W  D  I  F  L  L  L  A  V  C  V  G  H  I  V  T  L  Q  H  V  Y  I  L  V  T  N  F  I  N  L  F  M  M  V  T  H  K  S  I  L  N  *  Q  L  V  F  L  I  Q  Y  I  N  K  I  *  A  H  V  F  S  P  F  K  L  M  F  L  N  E  L  D  *  S  L  V  C  L  W  S  *  Q  I  </first_frame>
            <second_frame>  I  I  F  F  P  L  S  P  F  F  F  E  L  S  I  F  L  Y  S  S  L  F  L  Q  N  Q  T  N  F  H  T  Y  V  C  L  M  E  L  T  F  M  *  I  G  *  S  F  *  F  Y  T  L  K  N  V  S  H  A  I  S  I  L  W  F  K  F  G  F  E  F  *  F  L  S  T  W  G  F  S  I  S  K  R  V  S  E  S  E  I  S  A  F  I  D  Q  F  S  S  S  P  I  K  L  S  F  S  C  E   : D  P  *  I  K  C  *  A  L  W  V  L  F  A  S  *  A  F  S  S  S  S  N  G  *   : *  C  W  G  L  F  V  S  *  L  G  R  *  *  W  S  S  *  I  *  V  L  I  K  *  R  *  R  Q  *  W  R  Y  F  T  T  A  N  H  G  C  *  F  A  Y  L  Q  G  A  A  L  F  C  *  R  H  R  K  N  S  P  A  N  N  A  W  Q  S  V  Q  E  K  K  :  D  K  I  W  H  S  K  Q  H  R  S  H  N  V  L  D  G  A  S  V  S  C  G  L  L  C  M  E  N  C  *  I  A  T  G  S  T  L  P  N  A  S  L  S  H  L  R  S  G  S  V  L  C  R  L  C  L  C  P  V  I  S  *  F  E  T  P  L  C  N  Q  E  G  G  A  C  S  A  L  *  *  E  R  H  C  Y  N  G  R  I  V  F  Y  S  N  W  S  N  C  C  *  N  Y  C  W  I  F  F  S  G  S  S  W  S  F  C  S  N  F  N  F  C  S  N  W  I  T  *  *  F  D  K  Y  E  E  *  *  C  W  L  V  C  S  I  S  D  H  V  G  G  E  P  F  F  L  F  L  Y  F  L  Q  I  I  L  L  L  L  V  S  L  E  L  M  V  L  L  S  G  T  Q  V  A  A  G  T  F  F  S  F  W  L  Y  A  S  D  I  S  S  P  Y  S  M  Y  T  F  L  *  L  I  S  S  T  F  L  *  W  *  L  T  N  L  F  *  I  D  N  *  F  F  L  F  S  I  S  T  K  F  K  L  M  Y  S  H  P  S  N  *  C  F  L  M  N  W  I  S  P  *  F  A  F  G  P  N  K  F </second_frame>
            <third_frame>   L  F  F  S  L  F  P  H  S  S  L  N  S  V  Y  S  F  I  L  L  S  F  C  K  I  K  P  I  F  I  H  M  F  V  *  W  S  *  R  S  C  E  S  D  N  P  F  D  F  T  L  *  K  M  L  V  M  R  S  Q  S  C  G  S  N  L  D  L  N  S  D  F  Y  R  L  G  V  S  Q  F  R  K  G  S  L  N  L  K  F  Q  R  L  L  I  N  F  H  H  L  R  L  S  S  H  F  P  V  K  :  I  R  R  S  S  A  R  R  Y  G  F  C  L  P  P  R  L  F  Q  V  R  A  M  D  D  :  D  V  G  V  S  S  F  H  D  W  G  D  N  N  G  A  V  E  Y  R  F  S  S  S  E  G  E  D  S  D  G  D  I  L  L  Q  P  I  T  D  V  D  L  P  T  S  K  E  Q  L  Y  S  A  D  D  T  V  R  T  H  Q  L  T  M  L  G  R  A  Y  K  R  K  R :   I  K  Y  G  I  L  N  N  I  G  L  I  M  F  S  T  V  L  L  S  L  V  D  C  C  A  W  K  I  V  R  L  P  L  A  P  L  Y  L  M  R  P  F  L  I  S  A  V  A  V  S  C  V  G  Y  V  C  V  P  L  F  R  S  L  K  L  H  S  V  I  R  K  E  G  P  A  R  H  S  S  K  K  G  T  A  T  M  G  G  L  Y  F  I  P  I  G  V  I  V  A  E  I  I  V  G  F  S  S  L  E  V  L  G  A  S  A  A  T  L  T  F  A  A  I  G  L  L  D  D  L  I  S  M  R  N  N  N  V  G  L  S  A  R  F  R  I  M  L  E  V  S  L  F  S  F  F  C  T  F  C  K  S  Y  F  C  F  L  F  L  W  S  *  W  Y  S  S  L  V  H  R  L  L  L  G  H  F  S  P  F  G  C  M  R  R  T  Y  R  H  P  T  A  C  I  H  S  C  N  *  F  H  Q  P  F  Y  D  G  N  S  Q  I  Y  F  K  L  T  T  S  F  S  Y  S  V  Y  Q  Q  N  L  S  S  C  I  L  T  L  Q  I  D  V  S  *  *  T  G  L  V  P  S  L  P  L  V  L  T  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0104N06.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48202" stop="48035"/>
                    <exon start="47917" stop="47843"/>
                    <exon start="47164" stop="46947"/>
                    <exon start="46749" stop="46233"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>975</number_coding_nucleotides>
                  <number_encoded_amino_acids>325</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMLVMRSQSCGSNLDLNSDFYRLGVSQFRKGSLNLKFQRLLINFHHLRLSSHFPVKIRRSSARRYGFCLPPRLFQVRAMDDDVGVSSFHDWGDNNGAVEYRFSSSEGEDSDGDILLQPITDVDLPTSKEQLYSADDTVRTHQLTMLGRAYKRKRIKYGILNNIGLIMFSTVLLSLVDCCAWKIVRLPLAPLYLMRPFLISAVAVSCVGYVCVPLFRSLKLHSVIRKEGPARHSSKKGTATMGGLYFIPIGVIVAEIIVGFSSLEVLGASAATLTFAAIGLLDDLISMRNNNVGLSARFRIMLEVSLFSFFCTFCKSYFCFLFLWS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="45452" e_stop="45255"/>
            <exon e_start="45046" e_stop="44838"/>
            <exon e_start="43956" e_stop="43591"/>
            <exon e_start="43306" e_stop="43254"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.780" acc_prob="0.987" e_score="0.975"/>
          <exon-intron don_prob="0.999" acc_prob="0.950" e_score="0.990"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.858"/>
          <exon-only e_score="0.566"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="45452" e_stop="45255" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="0.780" acc_prob="0.987">
            <gDNA_intron_boundary i_start="45254" i_stop="45047" i_length="208"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="45046" e_stop="44838" e_length="209"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.950">
            <gDNA_intron_boundary i_start="44837" i_stop="43957" i_length="881"/>
          </intron>
          <exon e_serial="3" e_score="0.858">
            <gDNA_exon_boundary e_start="43956" e_stop="43591" e_length="366"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43590" i_stop="43307" i_length="284"/>
          </intron>
          <exon e_serial="4" e_score="0.566">
            <gDNA_exon_boundary e_start="43306" e_stop="43254" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45452" stop="45255"/>
              <exon start="45046" stop="44838"/>
              <exon start="43956" stop="43591"/>
              <exon start="43306" stop="43254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546021" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45326" stop="45255"/>
              <exon start="45046" stop="44838"/>
              <exon start="43956" stop="43665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGGAAAACAGTGGTTCCCCTACCCGCGCCTCTTGGGCTCATATGCCTTGGAAGACTCTATCCTTTTTTAACTTCGTTTTGCTTTGCTTCCATGGCTAATGGAATTAATCTTACTGACGGTCTCGACGGATTGGCTGGAGGAACAGCCACATTGGCGTTCATTGCAATGGCTATTGCAGTGCTTCCTATATGTTCTG : AGCTTTCCATATTTGGAGCATCTATGGCAGGAGCCTGTGCAGGTTTTCTTCTGCACAACCGCTACAAAGCATCAATATTTATGGGTGATACAGGAGCTTTAGCCTTAGGGGGTGCTCTAGCTTCTATGGCTGCATGTACGGGGATGTTCTTTCCATTGTTCATCTCATCTGGTGTTTTTGTCCTCGAAGCACTATCAGTTATACTGCAG : GTTTCCTTCTTCAAGACAACGAAACACTTCCTAGGAACTGGACACCGCTTGTTTCGAATGGCACCATTACATCACCACCTTGAATTATGTGGAGTAAAAGAACCTGTCATTGTTGCTGGTGCATATGTTTTTTCTTGCATTTTGGCCTTGACTGCTGGATATGTGGGACTGGCTTCAGTATAACCTCACCTCATGAAGTTCAAGTCACTTCCTGCAAATTTTCTCTTTTGCGTTCAAACTTAGACAACAGATTGAAGAAACTGTTTTTTTTTTCCTTTCCAAAAAAAAAAATGTAGTTATTTTGATCTACCTCTGTAACTTAACTAGGAATAGTTGTTACTATCCAAATACTTGAGAATCGTAAAA : TTAAAAATAAATAAATAAGACAAGATAATTTGAGGTAGAAAGGGTAGTTTTTG</gDNA_template>
            <first_frame> A  G  K  Q  W  F  P  Y  P  R  L  L  G  S  Y  A  L  E  D  S  I  L  F  *  L  R  F  A  L  L  P  W  L  M  E  L  I  L  L  T  V  S  T  D  W  L  E  E  Q  P  H  W  R  S  L  Q  W  L  L  Q  C  F  L  Y  V  L  :  S  F  P  Y  L  E  H  L  W  Q  E  P  V  Q  V  F  F  C  T  T  A  T  K  H  Q  Y  L  W  V  I  Q  E  L  *  P  *  G  V  L  *  L  L  W  L  H  V  R  G  C  S  F  H  C  S  S  H  L  V  F  L  S  S  K  H  Y  Q  L  Y  C  R :   F  P  S  S  R  Q  R  N  T  S  *  E  L  D  T  A  C  F  E  W  H  H  Y  I  T  T  L  N  Y  V  E  *  K  N  L  S  L  L  L  V  H  M  F  F  L  A  F  W  P  *  L  L  D  M  W  D  W  L  Q  Y  N  L  T  S  *  S  S  S  H  F  L  Q  I  F  S  F  A  F  K  L  R  Q  Q  I  E  E  T  V  F  F  F  L  S  K  K  K  N  V  V  I  L  I  Y  L  C  N  L  T  R  N  S  C  Y  Y  P  N  T  *  E  S  *  N :   *  K  *  I  N  K  T  R  *  F  E  V  E  R  V  V  F  </first_frame>
            <second_frame>  Q  E  N  S  G  S  P  T  R  A  S  W  A  H  M  P  W  K  T  L  S  F  F  N  F  V  L  L  C  F  H  G  *  W  N  *  S  Y  *  R  S  R  R  I  G  W  R  N  S  H  I  G  V  H  C  N  G  Y  C  S  A  S  Y  M  F  * :   A  F  H  I  W  S  I  Y  G  R  S  L  C  R  F  S  S  A  Q  P  L  Q  S  I  N  I  Y  G  *  Y  R  S  F  S  L  R  G  C  S  S  F  Y  G  C  M  Y  G  D  V  L  S  I  V  H  L  I  W  C  F  C  P  R  S  T  I  S  Y  T  A   : G  F  L  L  Q  D  N  E  T  L  P  R  N  W  T  P  L  V  S  N  G  T  I  T  S  P  P  *  I  M  W  S  K  R  T  C  H  C  C  W  C  I  C  F  F  L  H  F  G  L  D  C  W  I  C  G  T  G  F  S  I  T  S  P  H  E  V  Q  V  T  S  C  K  F  S  L  L  R  S  N  L  D  N  R  L  K  K  L  F  F  F  S  F  P  K  K  K  M  *  L  F  *  S  T  S  V  T  *  L  G  I  V  V  T  I  Q  I  L  E  N  R  K   : I  K  N  K  *  I  R  Q  D  N  L  R  *  K  G  *  F  L </second_frame>
            <third_frame>   R  K  T  V  V  P  L  P  A  P  L  G  L  I  C  L  G  R  L  Y  P  F  L  T  S  F  C  F  A  S  M  A  N  G  I  N  L  T  D  G  L  D  G  L  A  G  G  T  A  T  L  A  F  I  A  M  A  I  A  V  L  P  I  C  S   : E  L  S  I  F  G  A  S  M  A  G  A  C  A  G  F  L  L  H  N  R  Y  K  A  S  I  F  M  G  D  T  G  A  L  A  L  G  G  A  L  A  S  M  A  A  C  T  G  M  F  F  P  L  F  I  S  S  G  V  F  V  L  E  A  L  S  V  I  L  Q  :  V  S  F  F  K  T  T  K  H  F  L  G  T  G  H  R  L  F  R  M  A  P  L  H  H  H  L  E  L  C  G  V  K  E  P  V  I  V  A  G  A  Y  V  F  S  C  I  L  A  L  T  A  G  Y  V  G  L  A  S  V  *  P  H  L  M  K  F  K  S  L  P  A  N  F  L  F  C  V  Q  T  *  T  T  D  *  R  N  C  F  F  F  P  F  Q  K  K  K  C  S  Y  F  D  L  P  L  *  L  N  *  E  *  L  L  L  S  K  Y  L  R  I  V  K  :  L  K  I  N  K  *  D  K  I  I  *  G  R  K  G  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0104N06.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45450" stop="45255"/>
                    <exon start="45046" stop="44838"/>
                    <exon start="43956" stop="43774"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKTVVPLPAPLGLICLGRLYPFLTSFCFASMANGINLTDGLDGLAGGTATLAFIAMAIAVLPICSELSIFGASMAGACAGFLLHNRYKASIFMGDTGALALGGALASMAACTGMFFPLFISSGVFVLEALSVILQVSFFKTTKHFLGTGHRLFRMAPLHHHLELCGVKEPVIVAGAYVFSCILALTAGYVGLASV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="43477" PGL_stop="43967"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43477" e_stop="43967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="43477" e_stop="43967" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43477" stop="43967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261140" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTATATGTTTAAAATGTGTATCAAATATATATATGTCTATTTGATTCTCGATAATCTTTCTCCTTTATCCGAATTTGAGACGGGCGATACAAAGAAGCCAGTAATAGGGTTATTTTACGATTCTCAAGTATTTGGATAGTAACAACTATTCCTAGTTAAGTTACAGAGGTAGATCAAAATAACTACATTTTTTTTTTTGGAAAGGAAAAAAAAAACAGTTTCTTCAATCTGTTGTCTAAGTTTGAACGCAAAAGAGAAAATTTGCAGGAAGTGACTTGAACTTCATGAGGTGAGGTTATACTGAAGCCAGTCCCACATATCCAGCAGTCAAGGCCAAAATGCAAGAAAAAACATATGCACCAGCAACAATGACAGGTTCTTTTACTCCACATAATTCAAGGTGGTGATGTAATGGTGCCATTCGAAACAAGCGGTGTCCAGTTCCTAGGAAGTGTTTCGTTGTCTTGAAGAAGGAAACCTGAGACACAG</gDNA_template>
            <first_frame> N  Y  M  F  K  M  C  I  K  Y  I  Y  V  Y  L  I  L  D  N  L  S  P  L  S  E  F  E  T  G  D  T  K  K  P  V  I  G  L  F  Y  D  S  Q  V  F  G  *  *  Q  L  F  L  V  K  L  Q  R  *  I  K  I  T  T  F  F  F  L  E  R  K  K  K  T  V  S  S  I  C  C  L  S  L  N  A  K  E  K  I  C  R  K  *  L  E  L  H  E  V  R  L  Y  *  S  Q  S  H  I  S  S  S  Q  G  Q  N  A  R  K  N  I  C  T  S  N  N  D  R  F  F  Y  S  T  *  F  K  V  V  M  *  W  C  H  S  K  Q  A  V  S  S  S  *  E  V  F  R  C  L  E  E  G  N  L  R  H   </first_frame>
            <second_frame>  I  I  C  L  K  C  V  S  N  I  Y  M  S  I  *  F  S  I  I  F  L  L  Y  P  N  L  R  R  A  I  Q  R  S  Q  *  *  G  Y  F  T  I  L  K  Y  L  D  S  N  N  Y  S  *  L  S  Y  R  G  R  S  K  *  L  H  F  F  F  W  K  G  K  K  K  Q  F  L  Q  S  V  V  *  V  *  T  Q  K  R  K  F  A  G  S  D  L  N  F  M  R  *  G  Y  T  E  A  S  P  T  Y  P  A  V  K  A  K  M  Q  E  K  T  Y  A  P  A  T  M  T  G  S  F  T  P  H  N  S  R  W  *  C  N  G  A  I  R  N  K  R  C  P  V  P  R  K  C  F  V  V  L  K  K  E  T  *  D  T  </second_frame>
            <third_frame>   L  Y  V  *  N  V  Y  Q  I  Y  I  C  L  F  D  S  R  *  S  F  S  F  I  R  I  *  D  G  R  Y  K  E  A  S  N  R  V  I  L  R  F  S  S  I  W  I  V  T  T  I  P  S  *  V  T  E  V  D  Q  N  N  Y  I  F  F  F  G  K  E  K  K  N  S  F  F  N  L  L  S  K  F  E  R  K  R  E  N  L  Q  E  V  T  *  T  S  *  G  E  V  I  L  K  P  V  P  H  I  Q  Q  S  R  P  K  C  K  K  K  H  M  H  Q  Q  Q  *  Q  V  L  L  L  H  I  I  Q  G  G  D  V  M  V  P  F  E  T  S  G  V  Q  F  L  G  S  V  S  L  S  *  R  R  K  P  E  T  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0104N06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="54612" PGL_stop="49355"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54612" e_stop="54281"/>
            <exon e_start="53183" e_stop="53102"/>
            <exon e_start="52896" e_stop="52802"/>
            <exon e_start="52673" e_stop="52602"/>
            <exon e_start="52517" e_stop="52438"/>
            <exon e_start="52344" e_stop="52260"/>
            <exon e_start="51989" e_stop="51942"/>
            <exon e_start="51859" e_stop="51794"/>
            <exon e_start="51698" e_stop="51564"/>
            <exon e_start="49910" e_stop="49787"/>
            <exon e_start="49699" e_stop="49355"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.035" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54612" e_stop="54281" e_length="332"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.918">
            <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53183" e_stop="53102" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.035" acc_prob="0.987">
            <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52896" e_stop="52802" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.973">
            <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52673" e_stop="52602" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="0.975">
            <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52517" e_stop="52438" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52344" e_stop="52260" e_length="85"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52259" i_stop="51990" i_length="270"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="51989" e_stop="51942" e_length="48"/>
          </exon>
          <intron i_serial="7" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="51941" i_stop="51860" i_length="82"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="51859" e_stop="51794" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="51793" i_stop="51699" i_length="95"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="51698" e_stop="51564" e_length="135"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="51563" i_stop="49911" i_length="1653"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="49910" e_stop="49787" e_length="124"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.969">
            <gDNA_intron_boundary i_start="49786" i_stop="49700" i_length="87"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="49699" e_stop="49355" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54612" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54612" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54611" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54609" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52260"/>
              <exon start="51989" stop="51950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54609" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54609" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54609" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54609" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54609" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54608" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52260"/>
              <exon start="51989" stop="51942"/>
              <exon start="51859" stop="51829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54607" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54606" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54605" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52260"/>
              <exon start="51989" stop="51979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54605" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54604" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54604" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54604" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54604" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54604" stop="54281"/>
              <exon start="53183" stop="53149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54600" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54600" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54600" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54600" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54597" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52260"/>
              <exon start="51989" stop="51942"/>
              <exon start="51859" stop="51818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54597" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52260"/>
              <exon start="51989" stop="51942"/>
              <exon start="51859" stop="51832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54596" stop="54281"/>
              <exon start="53183" stop="53154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54595" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54594" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54281"/>
              <exon start="53183" stop="53122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54281"/>
              <exon start="53183" stop="53148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54589" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54585" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52260"/>
              <exon start="51989" stop="51950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54581" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54573" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54573" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54573" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54573" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54571" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52260"/>
              <exon start="51989" stop="51963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54491" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54411" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52260"/>
              <exon start="51989" stop="51961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54315" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52260"/>
              <exon start="51989" stop="51942"/>
              <exon start="51859" stop="51812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52845" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52260"/>
              <exon start="51989" stop="51942"/>
              <exon start="51859" stop="51794"/>
              <exon start="51698" stop="51564"/>
              <exon start="49910" stop="49787"/>
              <exon start="49699" stop="49363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52835" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52260"/>
              <exon start="51989" stop="51942"/>
              <exon start="51859" stop="51794"/>
              <exon start="51698" stop="51564"/>
              <exon start="49910" stop="49787"/>
              <exon start="49699" stop="49617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52655" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52260"/>
              <exon start="51989" stop="51942"/>
              <exon start="51859" stop="51794"/>
              <exon start="51698" stop="51564"/>
              <exon start="49910" stop="49787"/>
              <exon start="49699" stop="49392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52649" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52260"/>
              <exon start="51989" stop="51942"/>
              <exon start="51859" stop="51794"/>
              <exon start="51698" stop="51564"/>
              <exon start="49910" stop="49854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52510" stop="52438"/>
              <exon start="52344" stop="52260"/>
              <exon start="51989" stop="51942"/>
              <exon start="51859" stop="51794"/>
              <exon start="51698" stop="51564"/>
              <exon start="49910" stop="49787"/>
              <exon start="49699" stop="49545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52472" stop="52438"/>
              <exon start="52344" stop="52260"/>
              <exon start="51989" stop="51942"/>
              <exon start="51859" stop="51794"/>
              <exon start="51698" stop="51589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52331" stop="52260"/>
              <exon start="51989" stop="51942"/>
              <exon start="51859" stop="51794"/>
              <exon start="51698" stop="51564"/>
              <exon start="49910" stop="49787"/>
              <exon start="49699" stop="49671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52311" stop="52260"/>
              <exon start="51989" stop="51942"/>
              <exon start="51859" stop="51794"/>
              <exon start="51698" stop="51564"/>
              <exon start="49910" stop="49787"/>
              <exon start="49699" stop="49668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51819" stop="51794"/>
              <exon start="51698" stop="51564"/>
              <exon start="49910" stop="49787"/>
              <exon start="49699" stop="49355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49868" stop="49787"/>
              <exon start="49699" stop="49368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350635" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCGAGAGATCAAGCGAAGAAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG : GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTG : TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT : GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAG : GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAA : TGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTGGTAAG : TTGCATGCTCTCGTGGAATATAACACAGTGGAAGCTGCTGAAAAAGCT : GTGACCATTTTGAATGATGAACAGGATTGGAGATTTGGCTTGCGAGTCAAGCTTCTCAAGAAAATA : AACAAGCCTGGCCAAAGCAAGAAAGGTTGGAGAGATCCAGATTCTGATAGGAATAACAATATCCAAGCATCTGATCCGGCAGTTAATGAGGAACACAATTCAAGTGAGCATCGTGTTGATTCACAAGACGAAGAG : GAGGGTGACCATCTATCAAAGGAGACCATTGGTGAGCATGCACAAAAGGAGAAAAATGGGCCCAGGGTGCCAACCAGAAATCGAGGCCGTGGAAGGAGAAACAAGCGTGGCACAAATGGACATG : GCCATGGAACTACTTCGTCCACTCATTTGGTTGAACCCTCAAAACCTCCTCCTGGTCCAAGAATGCCCGATGGAACCAGAGGATTTGCTATGGGAAGAGGCCGACCTCTTTCTTCATCTCCAAGCTAATGATGTCTTGTTAAGTGTGTTTTACTGCAAATATAATCTTATGTTTTGAGGATTGTGTTGCTATGTGAAAAATGCTTGGATGATGAATTTCAATGGTTGGTGCTTTGAAATGTACTCATGTGTTATAGAATTGTGGGTTCCTGGAGACAGCGGTATATAACATTGTACTATTGTGCCATTATGTTATTAAAGACCATTTTTTTTGTTTGGCCACTTG</gDNA_template>
            <first_frame> F  R  E  I  K  R  R  R  R  R  R  R  K  K  G  K  K  *  *  F  F  F  F  D  L  S  V  F  H  I  F  S  P  P  S  P  L  K  Q  *  K  W  K  Q  T  V  E  E  Y  S  L  Y  L  L  R  P  L  H  F  L  P  M  M  M  M  I  I  Q  I  F  H  L  L  D  R  R  S  L  T  L  L  T  I  I  L  S  R  L  I  N  S  M  P  K  S  P  P  L  Y  S  P  M  I  F  V  A  R  S  L  S  R :   L  S  I  T  S  A  M  K  I  C  L  L  T  S  F  C  *  S  M  *  P  E  T  R  K  D  L  :  S  L  *  K  *  L  P  L  S  E  K  *  R  S  L  R  R  R  H  Q  *  *  Q  L  H  L  G  N  L  L  C  L :   L  *  A  V  M  G  E  R  *  S  D  F  I  L  F  H  *  V  R  L  K  I  P  R :   F  V  L  Y  W  W  K  I  Y  L  R  I  I  Q  *  T  T  F  G  A  Y  L  A  R  L  E   : M  *  S  I  L  P  F  V  I  H  T  L  K  E  I  P  E  N  A  Q  L  Q  R  S  C  S  V  V  S :   C  M  L  S  W  N  I  T  Q  W  K  L  L  K  K  L :   *  P  F  *  M  M  N  R  I  G  D  L  A  C  E  S  S  F  S  R  K  * :   T  S  L  A  K  A  R  K  V  G  E  I  Q  I  L  I  G  I  T  I  S  K  H  L  I  R  Q  L  M  R  N  T  I  Q  V  S  I  V  L  I  H  K  T  K  R :   R  V  T  I  Y  Q  R  R  P  L  V  S  M  H  K  R  R  K  M  G  P  G  C  Q  P  E  I  E  A  V  E  G  E  T  S  V  A  Q  M  D  M  :  A  M  E  L  L  R  P  L  I  W  L  N  P  Q  N  L  L  L  V  Q  E  C  P  M  E  P  E  D  L  L  W  E  E  A  D  L  F  L  H  L  Q  A  N  D  V  L  L  S  V  F  Y  C  K  Y  N  L  M  F  *  G  L  C  C  Y  V  K  N  A  W  M  M  N  F  N  G  W  C  F  E  M  Y  S  C  V  I  E  L  W  V  P  G  D  S  G  I  *  H  C  T  I  V  P  L  C  Y  *  R  P  F  F  L  F  G  H  L </first_frame>
            <second_frame>  F  E  R  S  S  E  E  E  E  E  G  G  R  R  G  K  N  D  D  F  F  S  L  T  F  Q  F  S  I  S  S  L  L  P  L  L  *  N  N  K  N  G  S  R  R  W  R  S  T  P  Y  T  F  S  D  R  F  I  S  S  P  *  *  *  *  S  S  R  F  F  T  C  W  I  A  G  V  S  L  Y  *  R  S  F  *  A  V  *  S  T  P  C  P  S  H  R  H  C  T  H  R  *  S  S  *  Q  D  R  *  A   : G  *  V  L  L  Q  R  *  K  F  A  Y  *  Q  V  S  V  E  V  C  D  Q  R  Q  G  R  I  C :   P  C  E  S  N  C  L  F  Q  K  S  E  E  A  Y  E  G  D  I  N  N  S  S  C  T  *  G  I  F  S  A   : C  C  K  P  *  W  E  K  G  E  A  T  S  S  S  S  I  K  *  D  *  R  S  Q   : G  L  Y  C  I  G  G  K  F  T  *  G  S  F  S  E  Q  P  S  E  H  I  W  P  G  W  K  :  C  E  A  Y  Y  H  S  *  S  T  H  *  K  R  S  Q  K  M  H  N  C  R  E  A  A  Q  W  *   : V  A  C  S  R  G  I  *  H  S  G  S  C  *  K  S   : C  D  H  F  E  *  *  T  G  L  E  I  W  L  A  S  Q  A  S  Q  E  N   : K  Q  A  W  P  K  Q  E  R  L  E  R  S  R  F  *  *  E  *  Q  Y  P  S  I  *  S  G  S  *  *  G  T  Q  F  K  *  A  S  C  *  F  T  R  R  R   : G  G  *  P  S  I  K  G  D  H  W  *  A  C  T  K  G  E  K  W  A  Q  G  A  N  Q  K  S  R  P  W  K  E  K  Q  A  W  H  K  W  T  W :   P  W  N  Y  F  V  H  S  F  G  *  T  L  K  T  S  S  W  S  K  N  A  R  W  N  Q  R  I  C  Y  G  K  R  P  T  S  F  F  I  S  K  L  M  M  S  C  *  V  C  F  T  A  N  I  I  L  C  F  E  D  C  V  A  M  *  K  M  L  G  *  *  I  S  M  V  G  A  L  K  C  T  H  V  L  *  N  C  G  F  L  E  T  A  V  Y  N  I  V  L  L  C  H  Y  V  I  K  D  H  F  F  C  L  A  T   </second_frame>
            <third_frame>   S  R  D  Q  A  K  K  K  K  K  E  E  E  G  E  K  M  M  I  F  F  L  *  P  F  S  F  P  Y  L  L  S  S  L  S  F  K  T  I  K  M  E  A  D  G  G  G  V  L  P  I  P  S  Q  T  A  S  F  P  P  H  D  D  D  D  H  P  D  F  S  P  V  G  S  P  E  S  H  F  I  N  D  H  S  E  P  S  D  Q  L  H  A  Q  V  T  A  T  V  L  T  D  D  L  R  S  K  I  V  K  Q  :  V  E  Y  Y  F  S  D  E  N  L  P  T  D  K  F  L  L  K  Y  V  T  R  D  K  E  G  F   : V  P  V  K  V  I  A  S  F  R  K  V  K  K  L  T  K  E  T  S  I  I  A  A  A  L  R  E  S  S  L  L  :  V  V  S  R  D  G  R  K  V  K  R  L  H  P  L  P  L  S  E  I  K  D  P  K  :  V  C  T  V  L  V  E  N  L  P  E  D  H  S  V  N  N  L  R  S  I  F  G  Q  A  G  N :   V  K  H  I  T  I  R  D  P  H  T  E  R  D  P  R  K  C  T  T  A  E  K  L  L  S  G  K  :  L  H  A  L  V  E  Y  N  T  V  E  A  A  E  K  A  :  V  T  I  L  N  D  E  Q  D  W  R  F  G  L  R  V  K  L  L  K  K  I  :  N  K  P  G  Q  S  K  K  G  W  R  D  P  D  S  D  R  N  N  N  I  Q  A  S  D  P  A  V  N  E  E  H  N  S  S  E  H  R  V  D  S  Q  D  E  E  :  E  G  D  H  L  S  K  E  T  I  G  E  H  A  Q  K  E  K  N  G  P  R  V  P  T  R  N  R  G  R  G  R  R  N  K  R  G  T  N  G  H   : G  H  G  T  T  S  S  T  H  L  V  E  P  S  K  P  P  P  G  P  R  M  P  D  G  T  R  G  F  A  M  G  R  G  R  P  L  S  S  S  P  S  *  *  C  L  V  K  C  V  L  L  Q  I  *  S  Y  V  L  R  I  V  L  L  C  E  K  C  L  D  D  E  F  Q  W  L  V  L  *  N  V  L  M  C  Y  R  I  V  G  S  W  R  Q  R  Y  I  T  L  Y  Y  C  A  I  M  L  L  K  T  I  F  F  V  W  P  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0104N06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54541" stop="54281"/>
                    <exon start="53183" stop="53102"/>
                    <exon start="52896" stop="52802"/>
                    <exon start="52673" stop="52602"/>
                    <exon start="52517" stop="52438"/>
                    <exon start="52344" stop="52260"/>
                    <exon start="51989" stop="51942"/>
                    <exon start="51859" stop="51794"/>
                    <exon start="51698" stop="51564"/>
                    <exon start="49910" stop="49787"/>
                    <exon start="49699" stop="49572"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFSFPYLLSSLSFKTIKMEADGGGVLPIPSQTASFPPHDDDDHPDFSPVGSPESHFINDHSEPSDQLHAQVTATVLTDDLRSKIVKQVEYYFSDENLPTDKFLLKYVTRDKEGFVPVKVIASFRKVKKLTKETSIIAAALRESSLLVVSRDGRKVKRLHPLPLSEIKDPKVCTVLVENLPEDHSVNNLRSIFGQAGNVKHITIRDPHTERDPRKCTTAEKLLSGKLHALVEYNTVEAAEKAVTILNDEQDWRFGLRVKLLKKINKPGQSKKGWRDPDSDRNNNIQASDPAVNEEHNSSEHRVDSQDEEEGDHLSKETIGEHAQKEKNGPRVPTRNRGRGRRNKRGTNGHGHGTTSSTHLVEPSKPPPGPRMPDGTRGFAMGRGRPLSSSPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="54612" e_stop="54281"/>
            <exon e_start="53183" e_stop="53102"/>
            <exon e_start="52896" e_stop="52802"/>
            <exon e_start="52673" e_stop="52602"/>
            <exon e_start="52517" e_stop="52438"/>
            <exon e_start="52344" e_stop="52265"/>
            <exon e_start="51835" e_stop="51794"/>
            <exon e_start="51698" e_stop="51564"/>
            <exon e_start="49910" e_stop="49787"/>
            <exon e_start="49699" e_stop="49355"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.918" e_score="0.968"/>
          <exon-intron don_prob="0.035" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.698" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="54612" e_stop="54281" e_length="332"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.918">
            <gDNA_intron_boundary i_start="54280" i_stop="53184" i_length="1097"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53183" e_stop="53102" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.035" acc_prob="0.987">
            <gDNA_intron_boundary i_start="53101" i_stop="52897" i_length="205"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52896" e_stop="52802" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.973">
            <gDNA_intron_boundary i_start="52801" i_stop="52674" i_length="128"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52673" e_stop="52602" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="0.975">
            <gDNA_intron_boundary i_start="52601" i_stop="52518" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52517" e_stop="52438" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="52437" i_stop="52345" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52344" e_stop="52265" e_length="80"/>
          </exon>
          <intron i_serial="6" don_prob="0.698" acc_prob="0.972">
            <gDNA_intron_boundary i_start="52264" i_stop="51836" i_length="429"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="51835" e_stop="51794" e_length="42"/>
          </exon>
          <intron i_serial="7" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="51793" i_stop="51699" i_length="95"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="51698" e_stop="51564" e_length="135"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="51563" i_stop="49911" i_length="1653"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="49910" e_stop="49787" e_length="124"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.969">
            <gDNA_intron_boundary i_start="49786" i_stop="49700" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="49699" e_stop="49355" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54612" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54612" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54611" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54609" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54609" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54609" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54609" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54609" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54607" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54606" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54605" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54604" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54604" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54604" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54604" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54604" stop="54281"/>
              <exon start="53183" stop="53149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54600" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54600" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54600" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54600" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54596" stop="54281"/>
              <exon start="53183" stop="53154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54595" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54594" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54281"/>
              <exon start="53183" stop="53122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54592" stop="54281"/>
              <exon start="53183" stop="53148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54589" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54581" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54573" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54573" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54573" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54573" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54494" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52265"/>
              <exon start="51835" stop="51794"/>
              <exon start="51698" stop="51623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54491" stop="54281"/>
              <exon start="53183" stop="53102"/>
              <exon start="52896" stop="52802"/>
              <exon start="52673" stop="52602"/>
              <exon start="52517" stop="52438"/>
              <exon start="52344" stop="52326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51819" stop="51794"/>
              <exon start="51698" stop="51564"/>
              <exon start="49910" stop="49787"/>
              <exon start="49699" stop="49355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49868" stop="49787"/>
              <exon start="49699" stop="49368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350635" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCGAGAGATCAAGCGAAGAAGAAGAAGAAGGAGGAAGAAGGGGAAAAAATGATGATTTTTTTTCTTTGACCTTTCAGTTTTCCATATCTTCTCTCCTCCCTCTCCTTTAAAACAATAAAAATGGAAGCAGACGGTGGAGGAGTACTCCCTATACCTTCTCAGACCGCTTCATTTCCTCCCCATGATGATGATGATCATCCAGATTTTTCACCTGTTGGATCGCCGGAGTCTCACTTTATTAACGATCATTCTGAGCCGTCTGATCAACTCCATGCCCAAGTCACCGCCACTGTACTCACCGATGATCTTCGTAGCAAGATCGTTAAGCAG : GTTGAGTATTACTTCAGCGATGAAAATTTGCCTACTGACAAGTTTCTGTTGAAGTATGTGACCAGAGACAAGGAAGGATTTG : TCCCTGTGAAAGTAATTGCCTCTTTCAGAAAAGTGAAGAAGCTTACGAAGGAGACATCAATAATAGCAGCTGCACTTAGGGAATCTTCTCTGCTT : GTTGTAAGCCGTGATGGGAGAAAGGTGAAGCGACTTCATCCTCTTCCATTAAGTGAGATTAAAGATCCCAAG : GTTTGTACTGTATTGGTGGAAAATTTACCTGAGGATCATTCAGTGAACAACCTTCGGAGCATATTTGGCCAGGCTGGAAA : TGTGAAGCATATTACCATTCGTGATCCACACACTGAAAGAGATCCCAGAAAATGCACAACTGCAGAGAAGCTGCTCAGTG : GATTGGAGATTTGGCTTGCGAGTCAAGCTTCTCAAGAAAATA : AACAAGCCTGGCCAAAGCAAGAAAGGTTGGAGAGATCCAGATTCTGATAGGAATAACAATATCCAAGCATCTGATCCGGCAGTTAATGAGGAACACAATTCAAGTGAGCATCGTGTTGATTCACAAGACGAAGAG : GAGGGTGACCATCTATCAAAGGAGACCATTGGTGAGCATGCACAAAAGGAGAAAAATGGGCCCAGGGTGCCAACCAGAAATCGAGGCCGTGGAAGGAGAAACAAGCGTGGCACAAATGGACATG : GCCATGGAACTACTTCGTCCACTCATTTGGTTGAACCCTCAAAACCTCCTCCTGGTCCAAGAATGCCCGATGGAACCAGAGGATTTGCTATGGGAAGAGGCCGACCTCTTTCTTCATCTCCAAGCTAATGATGTCTTGTTAAGTGTGTTTTACTGCAAATATAATCTTATGTTTTGAGGATTGTGTTGCTATGTGAAAAATGCTTGGATGATGAATTTCAATGGTTGGTGCTTTGAAATGTACTCATGTGTTATAGAATTGTGGGTTCCTGGAGACAGCGGTATATAACATTGTACTATTGTGCCATTATGTTATTAAAGACCATTTTTTTTGTTTGGCCACTTG</gDNA_template>
            <first_frame> F  R  E  I  K  R  R  R  R  R  R  R  K  K  G  K  K  *  *  F  F  F  F  D  L  S  V  F  H  I  F  S  P  P  S  P  L  K  Q  *  K  W  K  Q  T  V  E  E  Y  S  L  Y  L  L  R  P  L  H  F  L  P  M  M  M  M  I  I  Q  I  F  H  L  L  D  R  R  S  L  T  L  L  T  I  I  L  S  R  L  I  N  S  M  P  K  S  P  P  L  Y  S  P  M  I  F  V  A  R  S  L  S  R :   L  S  I  T  S  A  M  K  I  C  L  L  T  S  F  C  *  S  M  *  P  E  T  R  K  D  L  :  S  L  *  K  *  L  P  L  S  E  K  *  R  S  L  R  R  R  H  Q  *  *  Q  L  H  L  G  N  L  L  C  L :   L  *  A  V  M  G  E  R  *  S  D  F  I  L  F  H  *  V  R  L  K  I  P  R :   F  V  L  Y  W  W  K  I  Y  L  R  I  I  Q  *  T  T  F  G  A  Y  L  A  R  L  E   : M  *  S  I  L  P  F  V  I  H  T  L  K  E  I  P  E  N  A  Q  L  Q  R  S  C  S  V  :  D  W  R  F  G  L  R  V  K  L  L  K  K  I  :  N  K  P  G  Q  S  K  K  G  W  R  D  P  D  S  D  R  N  N  N  I  Q  A  S  D  P  A  V  N  E  E  H  N  S  S  E  H  R  V  D  S  Q  D  E  E  :  E  G  D  H  L  S  K  E  T  I  G  E  H  A  Q  K  E  K  N  G  P  R  V  P  T  R  N  R  G  R  G  R  R  N  K  R  G  T  N  G  H   : G  H  G  T  T  S  S  T  H  L  V  E  P  S  K  P  P  P  G  P  R  M  P  D  G  T  R  G  F  A  M  G  R  G  R  P  L  S  S  S  P  S  *  *  C  L  V  K  C  V  L  L  Q  I  *  S  Y  V  L  R  I  V  L  L  C  E  K  C  L  D  D  E  F  Q  W  L  V  L  *  N  V  L  M  C  Y  R  I  V  G  S  W  R  Q  R  Y  I  T  L  Y  Y  C  A  I  M  L  L  K  T  I  F  F  V  W  P  L  </first_frame>
            <second_frame>  F  E  R  S  S  E  E  E  E  E  G  G  R  R  G  K  N  D  D  F  F  S  L  T  F  Q  F  S  I  S  S  L  L  P  L  L  *  N  N  K  N  G  S  R  R  W  R  S  T  P  Y  T  F  S  D  R  F  I  S  S  P  *  *  *  *  S  S  R  F  F  T  C  W  I  A  G  V  S  L  Y  *  R  S  F  *  A  V  *  S  T  P  C  P  S  H  R  H  C  T  H  R  *  S  S  *  Q  D  R  *  A   : G  *  V  L  L  Q  R  *  K  F  A  Y  *  Q  V  S  V  E  V  C  D  Q  R  Q  G  R  I  C :   P  C  E  S  N  C  L  F  Q  K  S  E  E  A  Y  E  G  D  I  N  N  S  S  C  T  *  G  I  F  S  A   : C  C  K  P  *  W  E  K  G  E  A  T  S  S  S  S  I  K  *  D  *  R  S  Q   : G  L  Y  C  I  G  G  K  F  T  *  G  S  F  S  E  Q  P  S  E  H  I  W  P  G  W  K  :  C  E  A  Y  Y  H  S  *  S  T  H  *  K  R  S  Q  K  M  H  N  C  R  E  A  A  Q  W :   I  G  D  L  A  C  E  S  S  F  S  R  K  * :   T  S  L  A  K  A  R  K  V  G  E  I  Q  I  L  I  G  I  T  I  S  K  H  L  I  R  Q  L  M  R  N  T  I  Q  V  S  I  V  L  I  H  K  T  K  R :   R  V  T  I  Y  Q  R  R  P  L  V  S  M  H  K  R  R  K  M  G  P  G  C  Q  P  E  I  E  A  V  E  G  E  T  S  V  A  Q  M  D  M  :  A  M  E  L  L  R  P  L  I  W  L  N  P  Q  N  L  L  L  V  Q  E  C  P  M  E  P  E  D  L  L  W  E  E  A  D  L  F  L  H  L  Q  A  N  D  V  L  L  S  V  F  Y  C  K  Y  N  L  M  F  *  G  L  C  C  Y  V  K  N  A  W  M  M  N  F  N  G  W  C  F  E  M  Y  S  C  V  I  E  L  W  V  P  G  D  S  G  I  *  H  C  T  I  V  P  L  C  Y  *  R  P  F  F  L  F  G  H  L </second_frame>
            <third_frame>   S  R  D  Q  A  K  K  K  K  K  E  E  E  G  E  K  M  M  I  F  F  L  *  P  F  S  F  P  Y  L  L  S  S  L  S  F  K  T  I  K  M  E  A  D  G  G  G  V  L  P  I  P  S  Q  T  A  S  F  P  P  H  D  D  D  D  H  P  D  F  S  P  V  G  S  P  E  S  H  F  I  N  D  H  S  E  P  S  D  Q  L  H  A  Q  V  T  A  T  V  L  T  D  D  L  R  S  K  I  V  K  Q  :  V  E  Y  Y  F  S  D  E  N  L  P  T  D  K  F  L  L  K  Y  V  T  R  D  K  E  G  F   : V  P  V  K  V  I  A  S  F  R  K  V  K  K  L  T  K  E  T  S  I  I  A  A  A  L  R  E  S  S  L  L  :  V  V  S  R  D  G  R  K  V  K  R  L  H  P  L  P  L  S  E  I  K  D  P  K  :  V  C  T  V  L  V  E  N  L  P  E  D  H  S  V  N  N  L  R  S  I  F  G  Q  A  G  N :   V  K  H  I  T  I  R  D  P  H  T  E  R  D  P  R  K  C  T  T  A  E  K  L  L  S   : G  L  E  I  W  L  A  S  Q  A  S  Q  E  N   : K  Q  A  W  P  K  Q  E  R  L  E  R  S  R  F  *  *  E  *  Q  Y  P  S  I  *  S  G  S  *  *  G  T  Q  F  K  *  A  S  C  *  F  T  R  R  R   : G  G  *  P  S  I  K  G  D  H  W  *  A  C  T  K  G  E  K  W  A  Q  G  A  N  Q  K  S  R  P  W  K  E  K  Q  A  W  H  K  W  T  W :   P  W  N  Y  F  V  H  S  F  G  *  T  L  K  T  S  S  W  S  K  N  A  R  W  N  Q  R  I  C  Y  G  K  R  P  T  S  F  F  I  S  K  L  M  M  S  C  *  V  C  F  T  A  N  I  I  L  C  F  E  D  C  V  A  M  *  K  M  L  G  *  *  I  S  M  V  G  A  L  K  C  T  H  V  L  *  N  C  G  F  L  E  T  A  V  Y  N  I  V  L  L  C  H  Y  V  I  K  D  H  F  F  C  L  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0104N06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54541" stop="54281"/>
                    <exon start="53183" stop="53102"/>
                    <exon start="52896" stop="52802"/>
                    <exon start="52673" stop="52602"/>
                    <exon start="52517" stop="52438"/>
                    <exon start="52344" stop="52265"/>
                    <exon start="51835" stop="51794"/>
                    <exon start="51698" stop="51652"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFSFPYLLSSLSFKTIKMEADGGGVLPIPSQTASFPPHDDDDHPDFSPVGSPESHFINDHSEPSDQLHAQVTATVLTDDLRSKIVKQVEYYFSDENLPTDKFLLKYVTRDKEGFVPVKVIASFRKVKKLTKETSIIAAALRESSLLVVSRDGRKVKRLHPLPLSEIKDPKVCTVLVENLPEDHSVNNLRSIFGQAGNVKHITIRDPHTERDPRKCTTAEKLLSGLEIWLASQASQENKQAWPKQERLERSRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="59803" PGL_stop="57137"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59803" e_stop="59655"/>
            <exon e_start="58607" e_stop="58107"/>
            <exon e_start="57964" e_stop="57137"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59803" e_stop="59655" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="59654" i_stop="58608" i_length="1047"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="58607" e_stop="58107" e_length="501"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58106" i_stop="57965" i_length="142"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57964" e_stop="57137" e_length="828"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59803" stop="59655"/>
              <exon start="58607" stop="58107"/>
              <exon start="57964" stop="57137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59784" stop="59655"/>
              <exon start="58607" stop="58107"/>
              <exon start="57964" stop="57897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59784" stop="59655"/>
              <exon start="58607" stop="58230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59783" stop="59655"/>
              <exon start="58607" stop="58406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59780" stop="59655"/>
              <exon start="58607" stop="58140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59779" stop="59655"/>
              <exon start="58607" stop="58107"/>
              <exon start="57964" stop="57946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59775" stop="59655"/>
              <exon start="58607" stop="58107"/>
              <exon start="57964" stop="57959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59771" stop="59655"/>
              <exon start="58607" stop="58558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59767" stop="59655"/>
              <exon start="58607" stop="58107"/>
              <exon start="57964" stop="57819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59758" stop="59655"/>
              <exon start="58607" stop="58107"/>
              <exon start="57964" stop="57701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57913" stop="57192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57913" stop="57215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57913" stop="57292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57910" stop="57187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57557" stop="57189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229819" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACTCAAAGCAGAGTGTTGTTAGAATAGAAAAAAAAAGGGAATTTATTCTTTGTCGCCATGGAAATAGCTTCAAGCTCAACAAAATTCAAATGGGTCACTGCATTTCTTCTGCTTCTTGCTTGCTCTGCCGCTGGACAAGTACAAGATG : GTCCGTTAGTTAACGGTAATTTTGAGACCCCGCCGTCAGGTGGTTTCTCTTCCGGCGATGGATTCTCCGACGGTCCATCTGAAATCCCCAGCTGGAAATCAAACGGCACCGTAGAGTTAGTAGAATCCGGGCAAAAACAGGGTGGAATGATCCTCATCGTACCACAAGGTAGACACGCAGTTCGGCTTGGAAACGACGCCGAGATAAGCCAAGAGCTCAAAGTAGAGAAAGGTTCCATTTACTCGATCACTTTCAGCGCGGCTCGCACTTGCGCTCAGCTAGAGTCACTCAACGTTTCAGTTCCTCCTGCCTCACAGACCATTGATCTTCAGACTCTGTATAGTGTTCAGGGCTGGGATTCTTACGCGTGGGCCTTTCAGGCTGAAGAAGATGATGTGCGGGTCGTTTTTACAAATCCTGGCATGGAAGATGACCCCACTTGTGGACCCATTATTGATGATATTGCTATCAAGAAGCTTTTCGTTCCAGATAAATCAAAAG : GTAATGCCGTAGTTAATGGAGACTTTGAAGAAGGTCCATGGATGTTTAGGAATGCTTCTCTCGGTGTTCTTCTCCCGACTAACCTAGACGAGGAAACGTCATCGCTCCCTGGTTGGATAGTTGAGTCAAATCGAGCAGTTCGATACATCGATACATATCACTTCACAGTTCCAGAAGGGAAGAGAGCAATAGAATTGCTTTCAGGAAAAGAAGGCATTATATCGCAGATGGTTGAAACCAAGCCTAACAAGCCATACCGATTGACATTTTTGTTTGGCCATGCAGGGGATTCATGCAAGGAACCACTTGCAATCATGGCCTTTGCTGGTGATCAAGCCCAAAACATACATTACACTCCCAATTTCAATTCTTCATTTCAGAATGCTAACCTGAATTTCACGGCCAAGGCGGACAGGACACGTATAGCGTTCTATAGTATCTATTACAATACAAGAAGTGATGATATGAGCTCTCTTTGTGGACCTGTTGTGGATGATGTGAGGGTTGAACTGTCTGGGTCTAGCAGAGTCAAGGTGTTCGGGTTTGGGTTTATGTTTTGGTTGTTAGTCTTCGTTTTTTGTTAAGACGAATAGCTTTCTGTTCCACTCAACGTATATGGGGATCCAATGTAGTACTACAGCAGGGAGGTCCAGAATCGGACGCCCCAGCATAAGAAAGTTGGCTGTATTAAATAGAAGGTATGTATGTCTTCTCGTGTCAATGTAGTATGTATTGGTATTTTTGCAATTGAAATTTGAAAGTGCTTCGTTTTGTTAATCTTTGGGATCCTTTACACCATCATCTTTTGTGGTGCTATGACAAATAGTA</gDNA_template>
            <first_frame> H  S  K  Q  S  V  V  R  I  E  K  K  R  E  F  I  L  C  R  H  G  N  S  F  K  L  N  K  I  Q  M  G  H  C  I  S  S  A  S  C  L  L  C  R  W  T  S  T  R  W :   S  V  S  *  R  *  F  *  D  P  A  V  R  W  F  L  F  R  R  W  I  L  R  R  S  I  *  N  P  Q  L  E  I  K  R  H  R  R  V  S  R  I  R  A  K  T  G  W  N  D  P  H  R  T  T  R  *  T  R  S  S  A  W  K  R  R  R  D  K  P  R  A  Q  S  R  E  R  F  H  L  L  D  H  F  Q  R  G  S  H  L  R  S  A  R  V  T  Q  R  F  S  S  S  C  L  T  D  H  *  S  S  D  S  V  *  C  S  G  L  G  F  L  R  V  G  L  S  G  *  R  R  *  C  A  G  R  F  Y  K  S  W  H  G  R  *  P  H  L  W  T  H  Y  *  *  Y  C  Y  Q  E  A  F  R  S  R  *  I  K  R :   *  C  R  S  *  W  R  L  *  R  R  S  M  D  V  *  E  C  F  S  R  C  S  S  P  D  *  P  R  R  G  N  V  I  A  P  W  L  D  S  *  V  K  S  S  S  S  I  H  R  Y  I  S  L  H  S  S  R  R  E  E  S  N  R  I  A  F  R  K  R  R  H  Y  I  A  D  G  *  N  Q  A  *  Q  A  I  P  I  D  I  F  V  W  P  C  R  G  F  M  Q  G  T  T  C  N  H  G  L  C  W  *  S  S  P  K  H  T  L  H  S  Q  F  Q  F  F  I  S  E  C  *  P  E  F  H  G  Q  G  G  Q  D  T  Y  S  V  L  *  Y  L  L  Q  Y  K  K  *  *  Y  E  L  S  L  W  T  C  C  G  *  C  E  G  *  T  V  W  V  *  Q  S  Q  G  V  R  V  W  V  Y  V  L  V  V  S  L  R  F  L  L  R  R  I  A  F  C  S  T  Q  R  I  W  G  S  N  V  V  L  Q  Q  G  G  P  E  S  D  A  P  A  *  E  S  W  L  Y  *  I  E  G  M  Y  V  F  S  C  Q  C  S  M  Y  W  Y  F  C  N  *  N  L  K  V  L  R  F  V  N  L  W  D  P  L  H  H  H  L  L  W  C  Y  D  K  *   </first_frame>
            <second_frame>  T  Q  S  R  V  L  L  E  *  K  K  K  G  N  L  F  F  V  A  M  E  I  A  S  S  S  T  K  F  K  W  V  T  A  F  L  L  L  L  A  C  S  A  A  G  Q  V  Q  D   : G  P  L  V  N  G  N  F  E  T  P  P  S  G  G  F  S  S  G  D  G  F  S  D  G  P  S  E  I  P  S  W  K  S  N  G  T  V  E  L  V  E  S  G  Q  K  Q  G  G  M  I  L  I  V  P  Q  G  R  H  A  V  R  L  G  N  D  A  E  I  S  Q  E  L  K  V  E  K  G  S  I  Y  S  I  T  F  S  A  A  R  T  C  A  Q  L  E  S  L  N  V  S  V  P  P  A  S  Q  T  I  D  L  Q  T  L  Y  S  V  Q  G  W  D  S  Y  A  W  A  F  Q  A  E  E  D  D  V  R  V  V  F  T  N  P  G  M  E  D  D  P  T  C  G  P  I  I  D  D  I  A  I  K  K  L  F  V  P  D  K  S  K   : G  N  A  V  V  N  G  D  F  E  E  G  P  W  M  F  R  N  A  S  L  G  V  L  L  P  T  N  L  D  E  E  T  S  S  L  P  G  W  I  V  E  S  N  R  A  V  R  Y  I  D  T  Y  H  F  T  V  P  E  G  K  R  A  I  E  L  L  S  G  K  E  G  I  I  S  Q  M  V  E  T  K  P  N  K  P  Y  R  L  T  F  L  F  G  H  A  G  D  S  C  K  E  P  L  A  I  M  A  F  A  G  D  Q  A  Q  N  I  H  Y  T  P  N  F  N  S  S  F  Q  N  A  N  L  N  F  T  A  K  A  D  R  T  R  I  A  F  Y  S  I  Y  Y  N  T  R  S  D  D  M  S  S  L  C  G  P  V  V  D  D  V  R  V  E  L  S  G  S  S  R  V  K  V  F  G  F  G  F  M  F  W  L  L  V  F  V  F  C  *  D  E  *  L  S  V  P  L  N  V  Y  G  D  P  M  *  Y  Y  S  R  E  V  Q  N  R  T  P  Q  H  K  K  V  G  C  I  K  *  K  V  C  M  S  S  R  V  N  V  V  C  I  G  I  F  A  I  E  I  *  K  C  F  V  L  L  I  F  G  I  L  Y  T  I  I  F  C  G  A  M  T  N  S  </second_frame>
            <third_frame>   L  K  A  E  C  C  *  N  R  K  K  K  G  I  Y  S  L  S  P  W  K  *  L  Q  A  Q  Q  N  S  N  G  S  L  H  F  F  C  F  L  L  A  L  P  L  D  K  Y  K  M  :  V  R  *  L  T  V  I  L  R  P  R  R  Q  V  V  S  L  P  A  M  D  S  P  T  V  H  L  K  S  P  A  G  N  Q  T  A  P  *  S  *  *  N  P  G  K  N  R  V  E  *  S  S  S  Y  H  K  V  D  T  Q  F  G  L  E  T  T  P  R  *  A  K  S  S  K  *  R  K  V  P  F  T  R  S  L  S  A  R  L  A  L  A  L  S  *  S  H  S  T  F  Q  F  L  L  P  H  R  P  L  I  F  R  L  C  I  V  F  R  A  G  I  L  T  R  G  P  F  R  L  K  K  M  M  C  G  S  F  L  Q  I  L  A  W  K  M  T  P  L  V  D  P  L  L  M  I  L  L  S  R  S  F  S  F  Q  I  N  Q  K  :  V  M  P  *  L  M  E  T  L  K  K  V  H  G  C  L  G  M  L  L  S  V  F  F  S  R  L  T  *  T  R  K  R  H  R  S  L  V  G  *  L  S  Q  I  E  Q  F  D  T  S  I  H  I  T  S  Q  F  Q  K  G  R  E  Q  *  N  C  F  Q  E  K  K  A  L  Y  R  R  W  L  K  P  S  L  T  S  H  T  D  *  H  F  C  L  A  M  Q  G  I  H  A  R  N  H  L  Q  S  W  P  L  L  V  I  K  P  K  T  Y  I  T  L  P  I  S  I  L  H  F  R  M  L  T  *  I  S  R  P  R  R  T  G  H  V  *  R  S  I  V  S  I  T  I  Q  E  V  M  I  *  A  L  F  V  D  L  L  W  M  M  *  G  L  N  C  L  G  L  A  E  S  R  C  S  G  L  G  L  C  F  G  C  *  S  S  F  F  V  K  T  N  S  F  L  F  H  S  T  Y  M  G  I  Q  C  S  T  T  A  G  R  S  R  I  G  R  P  S  I  R  K  L  A  V  L  N  R  R  Y  V  C  L  L  V  S  M  *  Y  V  L  V  F  L  Q  L  K  F  E  S  A  S  F  C  *  S  L  G  S  F  T  P  S  S  F  V  V  L  *  Q  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0104N06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59775" stop="59655"/>
                    <exon start="58607" stop="58107"/>
                    <exon start="57964" stop="57381"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1203</number_coding_nucleotides>
                  <number_encoded_amino_acids>401</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKGNLFFVAMEIASSSTKFKWVTAFLLLLACSAAGQVQDGPLVNGNFETPPSGGFSSGDGFSDGPSEIPSWKSNGTVELVESGQKQGGMILIVPQGRHAVRLGNDAEISQELKVEKGSIYSITFSAARTCAQLESLNVSVPPASQTIDLQTLYSVQGWDSYAWAFQAEEDDVRVVFTNPGMEDDPTCGPIIDDIAIKKLFVPDKSKGNAVVNGDFEEGPWMFRNASLGVLLPTNLDEETSSLPGWIVESNRAVRYIDTYHFTVPEGKRAIELLSGKEGIISQMVETKPNKPYRLTFLFGHAGDSCKEPLAIMAFAGDQAQNIHYTPNFNSSFQNANLNFTAKADRTRIAFYSIYYNTRSDDMSSLCGPVVDDVRVELSGSSRVKVFGFGFMFWLLVFVFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="57182" PGL_stop="57891"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57182" e_stop="57891"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="57182" e_stop="57891" e_length="710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57182" stop="57891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577571" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAGATTAACAAAACGAAGCACTTTCAAATTTCAATTGCAAAAATACCAATACATACTACATTGACACGAGAAGACATACATACCTTCTATTTAATACAGCCAACTTTCTTATGCTGGGGCGTCCGATTCTGGACCTCCCTGCTGTAGTACTACATTGGATCCCCATATACGTTGAGTGGAACAGAAAGCTATTCGTCTTAACAAAAAACGAAGACTAACAACCAAAACATAAACCCAAACCCGAACACCTTGACTCTGCTAGACCCAGACAGTTCAACCCTCACATCATCCACAACAGGTCCACAAAGAGAGCTCATATCATCACTTCTTGTATTGTAATAGATACTATAGAACGCTATACGTGTCCTGTCCGCCTTGGCCGTGAAATTCAGGTTAGCATTCTGAAATGAAGAATTGAAATTGGGAGTGTAATGTATGTTTTGGGCTTGATCACCAGCAAAGGCCATGATTGCAAGTGGTTCCTTGCATGAATCCCCTGCATGGCCAAACAAAAATGTCAATCGGTATGGCTTGTTAGGCTTGGTTTCAACCATCTGCGATATAATGCCTTCTTTTCCTGAAAGCAATTCTATTGCTCTCTTCCCTTCTGGAACTGTGAAGTGATATGTATCGATGTATCGAACTGCTCGATTTGACTCAACTATCCAACCAGGGAGCGATGACGTTTCCTCGTCTAGGTTAGTCGGG</gDNA_template>
            <first_frame> Q  R  L  T  K  R  S  T  F  K  F  Q  L  Q  K  Y  Q  Y  I  L  H  *  H  E  K  T  Y  I  P  S  I  *  Y  S  Q  L  S  Y  A  G  A  S  D  S  G  P  P  C  C  S  T  T  L  D  P  H  I  R  *  V  E  Q  K  A  I  R  L  N  K  K  R  R  L  T  T  K  T  *  T  Q  T  R  T  P  *  L  C  *  T  Q  T  V  Q  P  S  H  H  P  Q  Q  V  H  K  E  S  S  Y  H  H  F  L  Y  C  N  R  Y  Y  R  T  L  Y  V  S  C  P  P  W  P  *  N  S  G  *  H  S  E  M  K  N  *  N  W  E  C  N  V  C  F  G  L  D  H  Q  Q  R  P  *  L  Q  V  V  P  C  M  N  P  L  H  G  Q  T  K  M  S  I  G  M  A  C  *  A  W  F  Q  P  S  A  I  *  C  L  L  F  L  K  A  I  L  L  L  S  S  L  L  E  L  *  S  D  M  Y  R  C  I  E  L  L  D  L  T  Q  L  S  N  Q  G  A  M  T  F  P  R  L  G  *  S   </first_frame>
            <second_frame>  K  D  *  Q  N  E  A  L  S  N  F  N  C  K  N  T  N  T  Y  Y  I  D  T  R  R  H  T  Y  L  L  F  N  T  A  N  F  L  M  L  G  R  P  I  L  D  L  P  A  V  V  L  H  W  I  P  I  Y  V  E  W  N  R  K  L  F  V  L  T  K  N  E  D  *  Q  P  K  H  K  P  K  P  E  H  L  D  S  A  R  P  R  Q  F  N  P  H  I  I  H  N  R  S  T  K  R  A  H  I  I  T  S  C  I  V  I  D  T  I  E  R  Y  T  C  P  V  R  L  G  R  E  I  Q  V  S  I  L  K  *  R  I  E  I  G  S  V  M  Y  V  L  G  L  I  T  S  K  G  H  D  C  K  W  F  L  A  *  I  P  C  M  A  K  Q  K  C  Q  S  V  W  L  V  R  L  G  F  N  H  L  R  Y  N  A  F  F  S  *  K  Q  F  Y  C  S  L  P  F  W  N  C  E  V  I  C  I  D  V  S  N  C  S  I  *  L  N  Y  P  T  R  E  R  *  R  F  L  V  *  V  S  R  </second_frame>
            <third_frame>   K  I  N  K  T  K  H  F  Q  I  S  I  A  K  I  P  I  H  T  T  L  T  R  E  D  I  H  T  F  Y  L  I  Q  P  T  F  L  C  W  G  V  R  F  W  T  S  L  L  *  Y  Y  I  G  S  P  Y  T  L  S  G  T  E  S  Y  S  S  *  Q  K  T  K  T  N  N  Q  N  I  N  P  N  P  N  T  L  T  L  L  D  P  D  S  S  T  L  T  S  S  T  T  G  P  Q  R  E  L  I  S  S  L  L  V  L  *  *  I  L  *  N  A  I  R  V  L  S  A  L  A  V  K  F  R  L  A  F  *  N  E  E  L  K  L  G  V  *  C  M  F  W  A  *  S  P  A  K  A  M  I  A  S  G  S  L  H  E  S  P  A  W  P  N  K  N  V  N  R  Y  G  L  L  G  L  V  S  T  I  C  D  I  M  P  S  F  P  E  S  N  S  I  A  L  F  P  S  G  T  V  K  *  Y  V  S  M  Y  R  T  A  R  F  D  S  T  I  Q  P  G  S  D  D  V  S  S  S  R  L  V  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0104N06.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57192" stop="57401"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNEALSNFNCKNTNTYYIDTRRHTYLLFNTANFLMLGRPILDLPAVVLHWIPIYVEWNRKLFVLTKNED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="65079" PGL_stop="63966"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65079" e_stop="64642"/>
            <exon e_start="64571" e_stop="63966"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.913"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="65079" e_stop="64642" e_length="438"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64641" i_stop="64572" i_length="70"/>
          </intron>
          <exon e_serial="2" e_score="0.931">
            <gDNA_exon_boundary e_start="64571" e_stop="63966" e_length="606"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65079" stop="64642"/>
              <exon start="64571" stop="64290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65079" stop="64676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64445" stop="64208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64444" stop="63966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATAATATGTATTGATAATATTGTAAACCCTGCTATGTGTTTAATTGTATGCTTGCATGAATGTAATTATATAATTATGATTATATAAGCATGACAAAATTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTAATAATGAGACCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGATATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACAC : GTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAATCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGAGATCGGGTGTCACGAACCGACACGTAAATTTAGAGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACTGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATATTAATATACTCAATCTAATGAACATGGTTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAATTTGACGGTAATTGTTAATGATATAGTGCTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTGTACTGACCCCCTACTTTTATGTTTTCTTCTTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCGTCTTCAACTCAACAGTAATTCTAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> K  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  N  M  Y  *  *  Y  C  K  P  C  Y  V  F  N  C  M  L  A  *  M  *  L  Y  N  Y  D  Y  I  S  M  T  K  L  L  N  P  K  S  C  K  I  L  I  S  L  L  I  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  W  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  D  I  R  G  S  G  V  T  N  R  H  V  V  L  G  D  R  V  S  R  T  D  T  *  Y  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  :  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  S  T  R  R  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  R  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  *  H  K  R  N  K  D  N  E  S  *  K  I  L  I  Y  S  I  *  *  T  W  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  F  D  G  N  C  *  *  Y  S  A  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  C  T  D  P  L  L  L  C  F  L  L  C  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  F  *  P  V  F  V  T  P  D  L  Q  G  E  L  T  L  L  A  W  T </first_frame>
            <second_frame>  N  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  I  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  M  I  I  *  A  *  Q  N  Y  *  I  P  N  L  A  K  S  *  S  L  C  *  *  *  D  L  G  I  K  E  G  V  M  N  *  N  N  G  I  D  D  A  L  V  R  K  K  A  *  *  I  D  R  R  I  L  G  D  R  V  S  R  T  D  T  *  Y  *  G  I  G  C  H  E  P  T  R  S  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T :   *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  I  *  E  I  G  C  H  E  P  T  R  K  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  Y  *  Y  T  Q  S  N  E  H  G  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  V  L  T  P  Y  F  Y  V  F  F  F  V  I  C  G  V  Q  Q  T  C  R  R  L  Q  L  N  S  N  S  S  Q  S  S  S  H  R  I  F  R  V  S  *  R  F  *  L  G   </second_frame>
            <third_frame>   I  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  V  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  K  I  I  E  S  Q  I  L  Q  N  P  N  L  F  V  N  N  E  T  L  V  *  K  K  A  *  *  T  K  I  M  G  L  M  M  P  W  *  E  R  R  L  D  E  L  I  E  G  Y  *  G  I  G  C  H  E  P  T  R  S  I  R  G  S  G  V  T  N  R  H  V  V  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T   : R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  I  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  F  R  R  S  G  V  T  N  R  H  V  N  L  E  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  L  T  Q  E  K  *  R  *  *  I  L  K  D  I  N  I  L  N  L  M  N  M  V  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  I  *  R  *  L  L  M  I  *  C  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  L  Y  *  P  P  T  F  M  F  S  S  L  L  F  V  E  C  S  K  R  A  V  V  F  N  S  T  V  I  L  A  S  L  R  H  T  G  S  S  G  *  A  N  A  S  S  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0104N06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="64119" PGL_stop="64431"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64119" e_stop="64431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="64119" e_stop="64431" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64119" stop="64431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCAAATTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAACCATGTTCATTAGATTGAGTATATTAATATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCAGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCTCTAAATTTAC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  P  C  S  L  D  *  V  Y  *  Y  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  A  L  Y  H  *  Q  L  P  S  N  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  Q  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  L  *  I  Y </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  H  Y  I  I  N  N  Y  R  Q  I  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  T  M  F  I  R  L  S  I  L  I  S  F  K  I  H  Y  L  Y  F  S  C  V  S  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  S  K  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0104N06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 527 chains have been computed
$ 
$ memory statistics:
$ 625432 bytes spliced alignments in total
$ 229 spliced alignments have been stored
$ 2731 bytes was the average size of a spliced alignment
$ 27712 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1847 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 592 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:06:16
-->
