<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:14:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG278-R" ref_strand="+" ref_description="TG278-R">
      <seq>aaacttgctgctccacttcaaaattggccggtaaagggaagtcttcagtattatactcagctggccaaccacgacaggttgctacatggcaggaggctttttaaattcgatggaccacttactttctctgatggcaattccactttccggatcagctctcttggattgtaagaccaaaccaaacccatcttttaaattccacttattgggagtatttttgtgtttaatcttgaagttcttggtgttgtcccttggattcttgacattatagtttgaatttgttttgggggatgaattttgtagcttgcattacaccacggtgactttggggacacctgggttgaagtttcttgtggctcttgatactgggagtgacttattttgggtgccttgtgaatgcggcagatgtgcttctactgatgatcctacactttacagctctgtatgttttactcactttcccccttttttagggttatcttatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="1240" stop="154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="940" g_stop="454" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="TG278-R" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="TG278-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="940" e_stop="454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGCTGCTCCACTTCAAAATTGGCCGGTAAAGGGAAGTCTTCAGTATTATACTCAGCTGGCCAACCACGACAGGTTGCTACATGGCAGGAGGCTTTTTAAATTCGATGGACCACTTACTTTCTCTGATGGCAATTCCACTTTCCGGATCAGCTCTCTTGGATTGTAAGACCAAACCAAACCCATCTTTTAAATTCCACTTATTGGGAGTATTTTTGTGTTTAATCTTGAAGTTCTTGGTGTTGTCCCTTGGATTCTTGACATTATAGTTTGAATTTGTTTTGGGGGATGAATTTTGCAGCTTGCATTACACCACGGTGACTTTGGGGACACCTGGGTTGAAGTTTCTTGTGGCTCTTGATACTGGGAGTGACTTATTTTGGGTGCCTTGTGAATGCGGCAGATGTGCTTCTACTGATGATCCTACACTTTACAGCTCTGTATGTTTTACTCACTTTCCCCCCTTTTTAGGGTTATCTTATATC</genome_strand>
        <mrna_strand>AAACTTGCTGCTCCACTTCAAAATTGGCCGGTAAAGGGAAGTCTTCAGTATTATACTCAGCTGGCCAACCACGACAGGTTGCTACATGGCAGGAGGCTTTTTAAATTCGATGGACCACTTACTTTCTCTGATGGCAATTCCACTTTCCGGATCAGCTCTCTTGGATTGTAAGACCAAACCAAACCCATCTTTTAAATTCCACTTATTGGGAGTATTTTTGTGTTTAATCTTGAAGTTCTTGGTGTTGTCCCTTGGATTCTTGACATTATAGTTTGAATTTGTTTTGGGGGATGAATTTTGTAGCTTGCATTACACCACGGTGACTTTGGGGACACCTGGGTTGAAGTTTCTTGTGGCTCTTGATACTGGGAGTGACTTATTTTGGGTGCCTTGTGAATGCGGCAGATGTGCTTCTACTGATGATCCTACACTTTACAGCTCTGTATGTTTTACTCACTTTCCCCCTTTTTTAGGGTTATCTTATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At2g17705" ref_strand="+" ref_description="C2_At2g17705">
      <seq>gccttcccaaattcacggagaacgcggttttgaacccgattcatcttccccaaatttttctcttcataaaaaccccttaccacaatcgaaccccttcaccgtcaaagatggcatcaatctacagttgtaaagagtgcaatacaaacttcaatctccataccaactatcttttcccaccggatttttacttcgaagccggcaataaaggtactctatctttctccgctgttgattcatccaaattcaagttcgagaaagaagataaaattaaaccctttttcgaaacccttgattattggggaattcagaggaaaaggactaagatgatgtgtatgaattgtgggaaggttgtgggctatgtgtatgatgacgggccacccatgactgagagtccgggtcagtttcattttggtcctagtcaggttattcctagagctgcaaggtataggataaaaaataaagctttgaagattacttctgagacttgacatgtgatttgatttttgatgttctttttttttagatgttgaggtttgtatatggatttaagagatgtttgatgtttgtgtatatgagattttgatttttacattttgttggttttgtgagctgtttcatattttgtgtaaatatttatactggatcaataaagactcaccttttatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="48018" stop="46752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47718" g_stop="47052" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="668" polyA_stop="677"/>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="C2_At2g17705" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At2g17705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47718" e_stop="47052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCCCAAATTCACGGAGAACGCGGTTTTGAACCCGATTCATCTTCCCCAAATTTTTCTCTTCATAAAAACCCCTTACCACAATCGAACCCCTTCACCGTCAAAGATGGCATCAATCTACAGTTGTAAAGAGTGCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTTAGATGTTGAGGTTTGTATATGGATTTAAGAGATGTTTGATGTTTGTGTATATGAGATTTTGATTTTTACATTTTGTTGGTTTTGTGAGCTGTTTCATATTTTGTGTAAATATTTATACTGGATCAATAAAGACTCACCTTTTATGA</genome_strand>
        <mrna_strand>GCCTTCCCAAATTCACGGAGAACGCGGTTTTGAACCCGATTCATCTTCCCCAAATTTTTCTCTTCATAAAAACCCCTTACCACAATCGAACCCCTTCACCGTCAAAGATGGCATCAATCTACAGTTGTAAAGAGTGCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTTAGATGTTGAGGTTTGTATATGGATTTAAGAGATGTTTGATGTTTGTGTATATGAGATTTTGATTTTTACATTTTGTTGGTTTTGTGAGCTGTTTCATATTTTGTGTAAATATTTATACTGGATCAATAAAGACTCACCTTTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1671" ref_strand="+" ref_description="T1671">
      <seq>gaatcgaaccccttcaccgtcaaagatggcatcaatctacagttgtaaagagtgcaatacaaacttcaatctccataccaactatcttttcccaccggatttttacttcgaagccggcaataaaggtactctatctttctccgctgttgattcatccaaattcaagttcgagaaagaagataaaattaaaccctttttcgaaacccttgattattggggaattcagaggaaaaggactaagatgatgtgtatgaattgtgggaaggttgtgggctatgtgtatgatgacgggccacccatgactgagagtccgggtcagtttcattttggtcctagtcaggttattcctagagctgcaaggtataggataaaaaataaagctttgaagattacttctgagacttgacatgtgatttgatttttgatgttctttttttttagatgttgaggtttgtatatggatttaagagatgtttgatgtttgtgtatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="47935" stop="46845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47636" g_stop="47145" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="T1671" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="T1671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47636" e_stop="47145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCGAACCCCTTCACCGTCAAAGATGGCATCAATCTACAGTTGTAAAGAGTGCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTTAGATGTTGAGGTTTGTATATGGATTTAAGAGATGTTTGATGTTTGTGTATATG</genome_strand>
        <mrna_strand>GAATCGAACCCCTTCACCGTCAAAGATGGCATCAATCTACAGTTGTAAAGAGTGCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTTAGATGTTGAGGTTTGTATATGGATTTAAGAGATGTTTGATGTTTGTGTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="940" PGL_stop="454"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="940" e_stop="454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="940" e_stop="454" e_length="487"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="940" stop="454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG278-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTTGCTGCTCCACTTCAAAATTGGCCGGTAAAGGGAAGTCTTCAGTATTATACTCAGCTGGCCAACCACGACAGGTTGCTACATGGCAGGAGGCTTTTTAAATTCGATGGACCACTTACTTTCTCTGATGGCAATTCCACTTTCCGGATCAGCTCTCTTGGATTGTAAGACCAAACCAAACCCATCTTTTAAATTCCACTTATTGGGAGTATTTTTGTGTTTAATCTTGAAGTTCTTGGTGTTGTCCCTTGGATTCTTGACATTATAGTTTGAATTTGTTTTGGGGGATGAATTTTGCAGCTTGCATTACACCACGGTGACTTTGGGGACACCTGGGTTGAAGTTTCTTGTGGCTCTTGATACTGGGAGTGACTTATTTTGGGTGCCTTGTGAATGCGGCAGATGTGCTTCTACTGATGATCCTACACTTTACAGCTCTGTATGTTTTACTCACTTTCCCCCCTTTTTAGGGTTATCTTATATC</gDNA_template>
            <first_frame> K  L  A  A  P  L  Q  N  W  P  V  K  G  S  L  Q  Y  Y  T  Q  L  A  N  H  D  R  L  L  H  G  R  R  L  F  K  F  D  G  P  L  T  F  S  D  G  N  S  T  F  R  I  S  S  L  G  L  *  D  Q  T  K  P  I  F  *  I  P  L  I  G  S  I  F  V  F  N  L  E  V  L  G  V  V  P  W  I  L  D  I  I  V  *  I  C  F  G  G  *  I  L  Q  L  A  L  H  H  G  D  F  G  D  T  W  V  E  V  S  C  G  S  *  Y  W  E  *  L  I  L  G  A  L  *  M  R  Q  M  C  F  Y  *  *  S  Y  T  L  Q  L  C  M  F  Y  S  L  S  P  L  F  R  V  I  L  Y  </first_frame>
            <second_frame>  N  L  L  L  H  F  K  I  G  R  *  R  E  V  F  S  I  I  L  S  W  P  T  T  T  G  C  Y  M  A  G  G  F  L  N  S  M  D  H  L  L  S  L  M  A  I  P  L  S  G  S  A  L  L  D  C  K  T  K  P  N  P  S  F  K  F  H  L  L  G  V  F  L  C  L  I  L  K  F  L  V  L  S  L  G  F  L  T  L  *  F  E  F  V  L  G  D  E  F  C  S  L  H  Y  T  T  V  T  L  G  T  P  G  L  K  F  L  V  A  L  D  T  G  S  D  L  F  W  V  P  C  E  C  G  R  C  A  S  T  D  D  P  T  L  Y  S  S  V  C  F  T  H  F  P  P  F  L  G  L  S  Y  I </second_frame>
            <third_frame>   T  C  C  S  T  S  K  L  A  G  K  G  K  S  S  V  L  Y  S  A  G  Q  P  R  Q  V  A  T  W  Q  E  A  F  *  I  R  W  T  T  Y  F  L  *  W  Q  F  H  F  P  D  Q  L  S  W  I  V  R  P  N  Q  T  H  L  L  N  S  T  Y  W  E  Y  F  C  V  *  S  *  S  S  W  C  C  P  L  D  S  *  H  Y  S  L  N  L  F  W  G  M  N  F  A  A  C  I  T  P  R  *  L  W  G  H  L  G  *  S  F  L  W  L  L  I  L  G  V  T  Y  F  G  C  L  V  N  A  A  D  V  L  L  L  M  I  L  H  F  T  A  L  Y  V  L  L  T  F  P  P  F  *  G  Y  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="906" stop="670"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REVFSIILSWPTTTGCYMAGGFLNSMDHLLSLMAIPLSGSALLDCKTKPNPSFKFHLLGVFLCLILKFLVLSLGFLTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="669" stop="454"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEFVLGDEFCSLHYTTVTLGTPGLKFLVALDTGSDLFWVPCECGRCASTDDPTLYSSVCFTHFPPFLGLSYI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="47718" PGL_stop="47052"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47718" e_stop="47052"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47718" e_stop="47052" e_length="667"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47718" stop="47052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At2g17705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47636" stop="47145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1671" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTTCCCAAATTCACGGAGAACGCGGTTTTGAACCCGATTCATCTTCCCCAAATTTTTCTCTTCATAAAAACCCCTTACCACAATCGAACCCCTTCACCGTCAAAGATGGCATCAATCTACAGTTGTAAAGAGTGCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTTAGATGTTGAGGTTTGTATATGGATTTAAGAGATGTTTGATGTTTGTGTATATGAGATTTTGATTTTTACATTTTGTTGGTTTTGTGAGCTGTTTCATATTTTGTGTAAATATTTATACTGGATCAATAAAGACTCACCTTTTATGA</gDNA_template>
            <first_frame> A  F  P  N  S  R  R  T  R  F  *  T  R  F  I  F  P  K  F  F  S  S  *  K  P  L  T  T  I  E  P  L  H  R  Q  R  W  H  Q  S  T  V  V  K  S  A  I  Q  T  S  I  S  I  P  T  I  F  S  H  R  I  F  T  S  K  P  A  I  K  V  L  Y  L  S  P  L  L  I  H  P  N  S  S  S  R  K  K  I  K  L  N  P  F  S  K  P  L  I  I  G  E  F  R  G  K  G  L  R  *  C  V  *  I  V  G  R  L  W  A  M  C  M  M  T  G  H  P  *  L  R  V  R  V  S  F  I  L  V  L  V  R  L  F  L  E  L  Q  G  I  G  *  K  I  K  L  *  R  L  L  L  R  L  D  M  *  F  D  F  *  C  S  F  F  L  D  V  E  V  C  I  W  I  *  E  M  F  D  V  C  V  Y  E  I  L  I  F  T  F  C  W  F  C  E  L  F  H  I  L  C  K  Y  L  Y  W  I  N  K  D  S  P  F  M  </first_frame>
            <second_frame>  P  S  Q  I  H  G  E  R  G  F  E  P  D  S  S  S  P  N  F  S  L  H  K  N  P  L  P  Q  S  N  P  F  T  V  K  D  G  I  N  L  Q  L  *  R  V  Q  Y  K  L  Q  S  P  Y  Q  L  S  F  P  T  G  F  L  L  R  S  R  Q  *  R  Y  S  I  F  L  R  C  *  F  I  Q  I  Q  V  R  E  R  R  *  N  *  T  L  F  R  N  P  *  L  L  G  N  S  E  E  K  D  *  D  D  V  Y  E  L  W  E  G  C  G  L  C  V  *  *  R  A  T  H  D  *  E  S  G  S  V  S  F  W  S  *  S  G  Y  S  *  S  C  K  V  *  D  K  K  *  S  F  E  D  Y  F  *  D  L  T  C  D  L  I  F  D  V  L  F  F  *  M  L  R  F  V  Y  G  F  K  R  C  L  M  F  V  Y  M  R  F  *  F  L  H  F  V  G  F  V  S  C  F  I  F  C  V  N  I  Y  T  G  S  I  K  T  H  L  L  * </second_frame>
            <third_frame>   L  P  K  F  T  E  N  A  V  L  N  P  I  H  L  P  Q  I  F  L  F  I  K  T  P  Y  H  N  R  T  P  S  P  S  K  M  A  S  I  Y  S  C  K  E  C  N  T  N  F  N  L  H  T  N  Y  L  F  P  P  D  F  Y  F  E  A  G  N  K  G  T  L  S  F  S  A  V  D  S  S  K  F  K  F  E  K  E  D  K  I  K  P  F  F  E  T  L  D  Y  W  G  I  Q  R  K  R  T  K  M  M  C  M  N  C  G  K  V  V  G  Y  V  Y  D  D  G  P  P  M  T  E  S  P  G  Q  F  H  F  G  P  S  Q  V  I  P  R  A  A  R  Y  R  I  K  N  K  A  L  K  I  T  S  E  T  *  H  V  I  *  F  L  M  F  F  F  F  R  C  *  G  L  Y  M  D  L  R  D  V  *  C  L  C  I  *  D  F  D  F  Y  I  L  L  V  L  *  A  V  S  Y  F  V  *  I  F  I  L  D  Q  *  R  L  T  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47716" stop="47231"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPKFTENAVLNPIHLPQIFLFIKTPYHNRTPSPSKMASIYSCKECNTNFNLHTNYLFPPDFYFEAGNKGTLSFSAVDSSKFKFEKEDKIKPFFETLDYWGIQRKRTKMMCMNCGKVVGYVYDDGPPMTESPGQFHFGPSQVIPRAARYRIKNKALKITSET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 8 chains have been computed
$ 
$ memory statistics:
$ 5608 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 1869 bytes was the average size of a spliced alignment
$ 6704 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3352 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 9 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:14:19
-->
