<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:16:52"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1860" ref_strand="+" ref_description="T1860">
      <seq>gttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="973" stop="4597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1272" g_stop="1352" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="149" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="260" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="347" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="556" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4405" g_stop="4411" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="563" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="T1860" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="T1860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1272" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
          <exon e_start="4405" e_stop="4411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGAC</genome_strand>
        <mrna_strand>GTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g49900" ref_strand="+" ref_description="C2_At3g49900">
      <seq>cggcctgtggaatttcagttaatcgtgatgtccatgaatcggtggttgagtggaagccatgatcagctctatagagttgttgacctttatcttaaggaatacaaggggaagataacagatgaagaaaaaatcataatgtgcaattacatcgactgtagcatcctttcgccacaacttctcatgcatgcggtccaaaacgccagaatgccattaaggtttgtggtccaagccatgttcattgagcaattgagcacccgccgctctatcctaacgtccactgctgctgacaaccacgatcatcacaatgatcttctccgaagcaaaaacgatgtcagtttgggtgcaattctcgagcgagacgcagcacttcgtcaagtgtcacagcttaaggcagctatgaacgccacaagctcgcgaatccagagtttagagcaagagttgagtggcatgaagaaacttcttaacgaatcagatcaaaacgcgaagaataactctgctcgctctgctagttttcgatggagttccgagaataagatcgatagaggccaaattggatcagtttcatcagcaagcttccggatacttaccgctagagatagagcggttatgggatcttttaattcatcagaagttttttacgagaaagtggaaaagataaattttagtagaaggtttatgaatggattgaagagcccattccgagtttcaaagaagaaaccagagccaaaggtggaaaatgtaaaagagcccgaaggtggtaaacaacaccatggggaagttgtggtgataaagaaggatgtcccttttcgcaagcaccctcgttttttagattaaaaaaataaagtccttcgtttgcacaatttttttagatttatgtgttacttgagcttttgttgaatttgtcttctcctattggtaaacaacaccatggggaggttcccgtttttcaaaattgatttgtattgctttccaaattttttctcaactagtgatgtgagaccattccgcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="13521" stop="15225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13821" g_stop="13916" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13917" i_stop="14081" i_length="165">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14082" g_stop="14925" g_length="844"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="918" r_length="822" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1009" polyA_stop="1024"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="C2_At3g49900" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>940</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At3g49900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13821" e_stop="13916"/>
          <exon e_start="14082" e_stop="14925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAGGTAAGATACTCCCGATCCCCAATTCACAAAATTCGAATTATGTCACACAAATTAGGATGGGAGAGTATAAATTTTTTTAACCTAGTTCATATAGTTTCCTACTATGAAGGATGCACTTCATTGGTTTTGTCCTTTAATTTGTTAGTTACTCTGTTCTTTCAACAGGAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTTTTTAGATTCATGTGTTACTTCAGCTTTTGTTGAATTTCTCTTCTCTTATTATTA</genome_strand>
        <mrna_strand>CGGCCTGTGGAATTTCAGTTAATCGTGATGTCCATGAATCGGTGGTTGAGTGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG.....................................................................................................................................................................GAATACAAGGGGAAGATAACAGATGAAGAAAAAATCATAATGTGCAATTACATCGACTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTAACGTCCACTGCTGCTGACAACCACGATCATCACAATGATCTTCTCCGAAGCAAAAACGATGTCAGTTTGGGTGCAATTCTCGAGCGAGACGCAGCACTTCGTCAAGTGTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAGAAACTTCTTAACGAATCAGATCAAAACGC---GAA-GA--------ATAACTCTGCTCGCTCTGCTAGTTTTCGATGGAGTTCCGAGAATAAGATCGATAGAGGCCAAATTGGATCAGTTTCATCAGCAAGCTTCCGGATACTTACCGCTAGAGATAGAGCGGTTATGGGATCTTTTAATTCATCAGAAGTTTTTTACGA-G--------AAAGTGGAAAAGATAAATTTTAGTAGAAGGTTTATGAATGGATTGAAGAGCCCATTCCGAGTTTCAAAGAAGAAACCAGAGCCAAAGGTGGAAAATGTAAAAGAGCCCGAAGGTGGTAAACAACACCATGGGGAAGTTGTGGTGATAAAGAAGGATGTCCCTTTTCGCAAGCACCCTCGTTTTTTAGATT-AAAAAAATAAAGTCCTTCGTTTGCACAATTTTTTTAGATTTATGTGTTACTTGAGCTTTTGTTGAATTTGTCTTCTCCTATTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At5g67530" ref_strand="+" ref_description="C2_At5g67530">
      <seq>cggagaagaaggttcaaagcggccaccgtcttatggagcagatatttatctgatactgtaaaacggtatcgccaaaagaaacaatttcaagaacacagtcaacaagatttcttgtttcttggaaaagataagtgttcttctaaaaccctaattgagagagattatagttttttcaagaaagaagtgacaattacatcatggggaagaaacaacacagtaaagatcgaatgttcataaccaagacagaatgggcaactgaatggggtggcgctaaatccaaagaacttaaaaccccttttaaacggcttcccttctattgctgcgctcttacgtttacaccgttcgaggacccagtatgcacaaaagatggcaatgtctttgaaataatgcgtatagttccatacatcaggaaatatgggaggaatccagtgactggggcacctatgaagcaagaagacttaattcctcttactttccacaagaattctgaaggagagtatcattgtcctgtcttgaacaaggtttttacagagttcacacatatagttgctgtaagaactacgggaaatgttttctgttatgaggcagttaaagaactgaatatcaaaacaaagaactggaaggagcttctcactgatgaagcattctctagagaagaccttataacaattcaaaatcctaatgcactggacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="30599" stop="32611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30931" g_stop="31202" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="325" r_length="282" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31203" i_stop="31298" i_length="96">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31299" g_stop="31361" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="388" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31362" i_stop="31451" i_length="90">
            <donor d_prob="0.534" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31452" g_stop="31555" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="492" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31556" i_stop="31913" i_length="358">
            <donor d_prob="0.892" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31914" g_stop="32005" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="584" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32006" i_stop="32108" i_length="103">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32109" g_stop="32198" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="674" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32199" i_stop="32290" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32291" g_stop="32311" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="695" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="C2_At5g67530" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At5g67530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30931" e_stop="31202"/>
          <exon e_start="31299" e_stop="31361"/>
          <exon e_start="31452" e_stop="31555"/>
          <exon e_start="31914" e_stop="32005"/>
          <exon e_start="32109" e_stop="32198"/>
          <exon e_start="32291" e_stop="32311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATCTGATACTGTAAAACGGTATCGCCACAAGAAGCAATTTCAAGAACACAGTCAACAAGATTTCTTGTTTCTTGGAAAATAAAAGTGTTCTGCTAAAACCCTAATTCAGAGAGATTATAGTCTTTT--A-CAAGAA-AGGC-A-T-CA---TGGGGAAGAAACAACACAGTAAAGATCGAATGTTTATAACCAAGACAGAATGGGCAACTGAATGGGGTGGCGCTAAATCGAAAGAACTTAAAACCCCTTTTAAACGGCTTCCCTTCTATTGCTGCGCGTAAGTTTTTTTCTCTGCTATATTGATTGTTTACATCATTATCGTCTTTTGTGAAGTATATGTTTTGTTAAATTTGGCGTGTAATTTTATATGCAGTCTTACATTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTTTTTGAAATAATGTCAGTATTTCTTGGATTCAGAGTTTCCGTTTCTTGATGGGATTTTCATCCGGAGTATCCATTATTGTAGTTTTCTTTTTCTTTTTTCAGGCATATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTAACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAACTCTGAAGGTAGTACCTTGTTTTGAAGATATCCAATTTGTAATTAGCTTTGGAATTTGACGGGAAATCCAATTTGAACACGAATTTTATACTTAAAAGAACAAAAAAGTTATACTTGTAGTTGTACAATCATTGTATATGTCTTCTGACATTGAATGTGGGATGATCGATAAACACTTATGCCTACTTTTTTCACAGTCATCCGTTCAAACTTCCATCACAGTTTAAGGATGAAATCTTGGGTCTTTAGCCTTTGGTAATCAGGGATAGCTATACCTAGAAATTCTACTAGCTCTAGGGAGGGCAGTCATATTAGTAGTTGTCATTTTCCAGGAAAGGGTTGAAAACTGGTGTTTTATTGTTTCAGGAGAGTATCATTGTCCGGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAGGTATGGATATTTGTCTCCTGACCACTATTCATATGTGTCCTTCAAAGAAAAGAGCATCTTCTATTCCTTGTATGGAGAGTTTGATCCTGGCTTTCTTGCTTAGGCAGTTAAAGAACTGAATATCAAAACAAAGAACTGGAAGGAGCTTCTCACTGATGAAGCATTCTCTAGAGAAGACCTTATAACAATTCAAGTAAGCTTTTAAACTACTATCCTTCCTCTTAACTGTTATAGATGATTAATGAGAATGTTGTTTATATGATATATTTGAACATCTAACTGCAGAATCCTAATGCACTGGACACC</genome_strand>
        <mrna_strand>ATTTATCTGATACTGTAAAACGGTATCGCCAAAAGAAACAATTTCAAGAACACAGTCAACAAGATTTCTTGTTTCTTGGAAAAGATAAGTGTTCTTCTAAAACCCTAATTGAGAGAGATTATAGTTTTTTCAAGAAAGAAGTGACAATTACATCATGGGGAAGAAACAACACAGTAAAGATCGAATGTTCATAACCAAGACAGAATGGGCAACTGAATGGGGTGGCGCTAAATCCAAAGAACTTAAAACCCCTTTTAAACGGCTTCCCTTCTATTGCTGCGC................................................................................................TCTTACGTTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTCTTTGAAATAAT..........................................................................................GCGTATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTGACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAATTCTGAAG......................................................................................................................................................................................................................................................................................................................................................................GAGAGTATCATTGTCCTGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAG.......................................................................................................GCAGTTAAAGAACTGAATATCAAAACAAAGAACTGGAAGGAGCTTCTCACTGATGAAGCATTCTCTAGAGAAGACCTTATAACAATTCAA............................................................................................AATCCTAATGCACTGGACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="SSR123" ref_strand="+" ref_description="SSR123">
      <seq>gatgctttgaaccaaaatcactaaaggtactactactagtcttgtacatttattgtttgatgtggcaagagagatacgtaacccttttagtgttaaatggatactttgtttaggttagttagccttcaacaacaacaacaacaacaatctgatcaatactcttttaactccagcagaacttcaagcagctctagatcttctaacaaacaaaacagcacatacaattatcatccacatcataatcatcaagacgaagaatgcttcaactttttcatggatgaagatgatttctcttcttcttcttctaaacacaacaactatcctcctcctcattacaatcaatatcaacaaatctccacacccacaactacaagcagtaccccaacacatcaatctcaatctcaatatgatcatcaattctccccagcacgtgatttaaatctcgaattcgcttcctcattttctggaaaatgggccacagacattcttctagaaacttctcgtgccatagccgataagaacagtacacgtgtccaacagctcatgtggatgttgaatgagctgagctccccctatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="41007" stop="42186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41307" g_stop="41886" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SSR123" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SSR123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41307" e_stop="41886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCTTTGAACCAAAATCACTAAAGGTACTACTACTAGTCTTGTACATTTATTGTTTGATGTGGCAAGAGAGATACGTAACCCTTTTAGTGTTAAATGGATACTTTGTTTAGGTTAGTTAGCCTTCAACAACAACAACAACAACAATCTGATCAATACTCTTTTAACTCCAGCAGAACTTCAAGCAGCTCTAGATCTTCTAACAAACAAAACAGCACATACAATTATCATCCACATCATAATCATCAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGATGATTTCTCTTCTTCTTCTTCTAAACACAACAACTATCCTCCTCCTCATTACAATCAATATCAACAAATCTCCACACCCACAACTACAAGCAGTACCCCAACACATCAATCTCAATCTCAATATGATCATCAATTCTCCCCAGCACGTGATTTAAATCTCGAATTCGCTTCCTCATTTTCTGGAAAATGGGCCACAGACATTCTTCTAGAAACTTCTCGTGCCATAGCCGATAAGAACAGTACACGTGTCCAACAGCTCATGTGGATGTTGAATGAGCTGAGCTCCCCCTATGGAG</genome_strand>
        <mrna_strand>GATGCTTTGAACCAAAATCACTAAAGGTACTACTACTAGTCTTGTACATTTATTGTTTGATGTGGCAAGAGAGATACGTAACCCTTTTAGTGTTAAATGGATACTTTGTTTAGGTTAGTTAGCCTTCAACAACAACAACAACAACAATCTGATCAATACTCTTTTAACTCCAGCAGAACTTCAAGCAGCTCTAGATCTTCTAACAAACAAAACAGCACATACAATTATCATCCACATCATAATCATCAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGATGATTTCTCTTCTTCTTCTTCTAAACACAACAACTATCCTCCTCCTCATTACAATCAATATCAACAAATCTCCACACCCACAACTACAAGCAGTACCCCAACACATCAATCTCAATCTCAATATGATCATCAATTCTCCCCAGCACGTGATTTAAATCTCGAATTCGCTTCCTCATTTTCTGGAAAATGGGCCACAGACATTCTTCTAGAAACTTCTCGTGCCATAGCCGATAAGAACAGTACACGTGTCCAACAGCTCATGTGGATGTTGAATGAGCTGAGCTCCCCCTATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1272" PGL_stop="4411"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1272" e_stop="1352"/>
            <exon e_start="1487" e_stop="1554"/>
            <exon e_start="3701" e_stop="3811"/>
            <exon e_start="3903" e_stop="3989"/>
            <exon e_start="4088" e_stop="4296"/>
            <exon e_start="4405" e_stop="4411"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.789" e_score="0.988"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="1272" e_stop="1352" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.789">
            <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1487" e_stop="1554" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3701" e_stop="3811" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.944" acc_prob="0.997">
            <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3903" e_stop="3989" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.993">
            <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4088" e_stop="4296" e_length="209"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="4405" e_stop="4411" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1272" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1860" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG : ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG : GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC : ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG : CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT : GGGTGAC</gDNA_template>
            <first_frame> F  T  K  L  P  F  L  C  Q  R  K  *  A  R  D  L  D  F  S  L  I  L  A  R  K  P  E  :  M  F  *  L  R  T  I  F  P  I  R  N  Y  L  F  Q  P  T  V  T  L  E  W :   P  L  H  Q  L  Q  *  R  R  E  G  F  Q  L  E  M  L  E  H  N  T  N  I  R  I  L  *  L  M  S  K  L  I  Q  R  Q  T :   F  Q  P  L  L  L  *  M  T  L  P  L  Q  R  K  P  L  P  H  *  N  S  L  T  T  V  L  G  S :   *  R  F  S  T  I  T  I  M  L  H  L  V  Q  L  L  V  *  N  K  T  L  *  L  I  S  L  S  R  L  V  L  P  L  S  P  S  V  Q  R  Q  V  T  R  Q  P  K  V  N  L  Q  N  I  P  L  A  L  V  *  Q  N  Q  I  L  V  L  L  *  Y   : W  V   </first_frame>
            <second_frame>  L  R  N  F  H  S  S  A  R  E  N  E  Q  G  T  W  T  F  L  *  Y  W  Q  E  S  Q  R :   C  F  D  *  G  L  Y  F  R  S  E  T  I  Y  F  N  L  Q  *  H  W  S   : G  P  Y  I  N  C  S  E  E  G  R  A  F  N  W  R  C  W  S  T  I  Q  I  *  E  Y  F  N  *  C  Q  S  *  Y  S  V  K   : H  F  N  H  S  Y  S  K  *  H  C  P  F  N  E  N  H  C  L  T  E  I  P  *  L  Q  F  W  E   : A  R  G  S  V  L  S  P  S  C  C  I  *  Y  S  C  W  S  E  T  K  P  Y  S  *  S  L  C  H  A  W  Y  S  H  F  R  H  R  C  R  G  K  L  R  D  S  R  R  *  T  C  K  I  Y  R  W  H  *  C  D  K  T  R  F  L  C  C  Y  N  T  :  G  *  </second_frame>
            <third_frame>   Y  E  T  S  I  P  L  P  E  K  M  S  K  G  P  G  L  F  S  D  I  G  K  K  A  R   : D  V  L  T  K  D  Y  I  S  D  Q  K  L  S  I  S  T  Y  S  D  T  G  V  :  A  L  T  S  T  A  V  K  K  G  G  L  S  T  G  D  V  G  A  Q  Y  K  Y  K  N  T  L  I  D  V  K  V  D  T  A  S  N  :  I  S  T  T  L  T  L  N  D  I  A  P  S  T  K  T  I  A  S  L  K  F  P  D  Y  S  S  G  K  :  L  E  V  Q  Y  Y  H  H  H  A  A  F  S  T  A  V  G  L  K  Q  N  P  I  V  D  L  S  V  T  L  G  T  P  T  F  A  I  G  A  E  A  S  Y  E  T  A  E  G  K  L  A  K  Y  T  A  G  I  S  V  T  K  P  D  S  C  A  A  I  I  L :   G  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1274" stop="1352"/>
                    <exon start="1487" stop="1554"/>
                    <exon start="3701" stop="3811"/>
                    <exon start="3903" stop="3989"/>
                    <exon start="4088" stop="4296"/>
                    <exon start="4405" stop="4411"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YETSIPLPEKMSKGPGLFSDIGKKARDVLTKDYISDQKLSISTYSDTGVALTSTAVKKGGLSTGDVGAQYKYKNTLIDVKVDTASNISTTLTLNDIAPSTKTIASLKFPDYSSGKLEVQYYHHHAAFSTAVGLKQNPIVDLSVTLGTPTFAIGAEASYETAEGKLAKYTAGISVTKPDSCAAIILGD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="13821" PGL_stop="14925"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13821" e_stop="13916"/>
            <exon e_start="14082" e_stop="14925"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.958"/>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="13821" e_stop="13916" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13917" i_stop="14081" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="0.906">
            <gDNA_exon_boundary e_start="14082" e_stop="14925" e_length="844"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13821" stop="13916"/>
              <exon start="14082" stop="14925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g49900" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG : GAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTTTTTAGATTCATGTGTTACTTCAGCTTTTGTTGAATTTCTCTTCTCTTATTATTA</gDNA_template>
            <first_frame> L  P  V  E  F  Q  L  I  V  K  S  M  N  R  W  L  S  G  S  H  D  Q  L  Y  R  V  V  D  L  Y  L  K  :  E  Y  K  G  K  I  T  D  E  E  K  V  I  M  C  N  Y  I  D  C  S  I  L  S  P  Q  L  L  M  H  A  V  Q  N  A  R  M  P  L  R  F  V  V  Q  A  M  F  I  E  Q  L  S  T  R  R  S  I  L  T  T  T  A  A  D  N  H  N  H  H  I  D  V  L  H  S  K  N  D  V  S  L  G  A  I  L  E  R  D  A  A  L  R  Q  V  S  Q  L  K  A  A  M  N  A  T  S  S  R  I  Q  S  L  E  Q  E  L  S  G  M  K  K  L  L  N  E  S  D  Q  N  A  K  N  D  L  S  H  N  S  A  R  S  A  S  F  R  L  S  S  E  N  K  I  D  R  G  Q  I  G  S  V  S  S  A  S  F  R  I  L  T  A  R  D  R  A  V  M  G  S  S  N  S  S  E  V  S  Y  E  E  N  T  K  V  E  K  I  N  F  S  R  R  F  M  N  G  L  K  N  A  F  R  V  P  K  K  K  T  E  T  K  V  E  N  V  K  E  A  E  N  G  K  Q  Q  H  G  E  V  V  V  I  E  K  D  V  P  F  R  R  Q  P  R  S  L  D  *  K  K  *  S  T  L  F  A  Q  S  F  *  I  H  V  L  L  Q  L  L  L  N  F  S  S  L  I  I  </first_frame>
            <second_frame>  C  Q  W  N  F  S  *  S  *  S  P  *  I  G  G  *  A  E  A  M  I  S  S  I  E  L  L  T  F  I  L  R :   N  T  K  G  R  *  Q  M  K  K  K  S  *  C  A  I  T  S  I  V  A  S  F  R  H  N  F  S  C  M  R  S  K  T  P  E  C  H  *  G  L  W  S  K  P  C  S  L  S  N  *  A  P  A  A  L  S  S  R  P  L  L  L  T  T  T  I  I  T  L  M  F  S  T  A  K  T  M  L  V  W  V  Q  F  S  N  E  T  Q  H  F  V  K  F  H  S  L  R  Q  L  *  T  P  Q  A  R  E  S  R  V  *  S  K  S  *  V  A  *  K  S  F  L  T  N  Q  I  K  T  R  R  M  I  C  R  I  T  P  L  A  L  L  V  F  D  *  V  L  R  I  R  S  I  E  G  K  L  D  Q  F  H  P  Q  A  F  G  Y  L  Q  L  E  I  E  R  *  W  V  R  L  I  H  Q  K  Y  L  T  R  K  I  Q  K  W  K  R  L  I  L  V  E  G  L  *  M  D  *  R  T  H  S  E  C  Q  R  R  K  Q  R  Q  R  W  K  M  *  K  R  P  K  M  V  N  N  N  M  E  K  L  W  *  *  R  R  M  C  L  F  A  G  S  L  V  L  *  I  K  K  N  E  V  L  C  L  H  N  L  F  R  F  M  C  Y  F  S  F  C  *  I  S  L  L  L  L  L </second_frame>
            <third_frame>   A  S  G  I  S  V  N  R  E  V  H  E  S  V  V  E  R  K  P  *  S  A  L  *  S  C  *  P  L  S  *   : G  I  Q  R  E  D  N  R  *  R  K  S  H  N  V  Q  L  H  R  L  *  H  P  F  A  T  T  S  H  A  C  G  P  K  R  Q  N  A  I  K  V  C  G  P  S  H  V  H  *  A  I  E  H  P  P  L  Y  P  H  D  H  C  C  *  Q  P  Q  S  S  H  *  C  S  P  Q  Q  K  R  C  *  F  G  C  N  S  R  T  R  R  S  T  S  S  S  F  T  A  *  G  S  Y  E  R  H  K  L  A  N  P  E  F  R  A  R  V  E  W  H  E  K  A  S  *  R  I  R  S  K  R  E  E  *  F  V  A  *  L  R  S  L  C  *  F  S  I  E  F  *  E  *  D  R  *  R  A  N  W  I  S  F  I  R  K  L  S  D  T  Y  S  *  R  *  S  G  N  G  F  V  *  F  I  R  S  I  L  R  G  K  Y  K  S  G  K  D  *  F  *  S  K  V  Y  E  W  I  E  E  R  I  P  S  A  K  E  E  N  R  D  K  G  G  K  C  K  R  G  R  K  W  *  T  T  T  W  R  S  C  G  D  R  E  G  C  A  F  S  Q  A  A  S  F  S  R  L  K  K  M  K  Y  F  V  C  T  I  F  L  D  S  C  V  T  S  A  F  V  E  F  L  F  S  Y  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13821" stop="13916"/>
                    <exon start="14082" stop="14840"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPVEFQLIVKSMNRWLSGSHDQLYRVVDLYLKEYKGKITDEEKVIMCNYIDCSILSPQLLMHAVQNARMPLRFVVQAMFIEQLSTRRSILTTTAADNHNHHIDVLHSKNDVSLGAILERDAALRQVSQLKAAMNATSSRIQSLEQELSGMKKLLNESDQNAKNDLSHNSARSASFRLSSENKIDRGQIGSVSSASFRILTARDRAVMGSSNSSEVSYEENTKVEKINFSRRFMNGLKNAFRVPKKKTETKVENVKEAENGKQQHGEVVVIEKDVPFRRQPRSLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="30931" PGL_stop="32311"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30931" e_stop="31202"/>
            <exon e_start="31299" e_stop="31361"/>
            <exon e_start="31452" e_stop="31555"/>
            <exon e_start="31914" e_stop="32005"/>
            <exon e_start="32109" e_stop="32198"/>
            <exon e_start="32291" e_stop="32311"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.882"/>
          <exon-intron don_prob="0.534" acc_prob="0.999" e_score="0.968"/>
          <exon-intron don_prob="0.892" acc_prob="0.976" e_score="0.971"/>
          <exon-intron don_prob="0.947" acc_prob="0.898" e_score="0.989"/>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.882">
            <gDNA_exon_boundary e_start="30931" e_stop="31202" e_length="272"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31203" i_stop="31298" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="31299" e_stop="31361" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.534" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31362" i_stop="31451" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="31452" e_stop="31555" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.892" acc_prob="0.976">
            <gDNA_intron_boundary i_start="31556" i_stop="31913" i_length="358"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="31914" e_stop="32005" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.947" acc_prob="0.898">
            <gDNA_intron_boundary i_start="32006" i_stop="32108" i_length="103"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32109" e_stop="32198" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="32199" i_stop="32290" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32291" e_stop="32311" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30931" stop="31202"/>
              <exon start="31299" stop="31361"/>
              <exon start="31452" stop="31555"/>
              <exon start="31914" stop="32005"/>
              <exon start="32109" stop="32198"/>
              <exon start="32291" stop="32311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g67530" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTATCTGATACTGTAAAACGGTATCGCCACAAGAAGCAATTTCAAGAACACAGTCAACAAGATTTCTTGTTTCTTGGAAAATAAAAGTGTTCTGCTAAAACCCTAATTCAGAGAGATTATAGTCTTTTACAAGAAAGGCATCATGGGGAAGAAACAACACAGTAAAGATCGAATGTTTATAACCAAGACAGAATGGGCAACTGAATGGGGTGGCGCTAAATCGAAAGAACTTAAAACCCCTTTTAAACGGCTTCCCTTCTATTGCTGCGC : TCTTACATTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTTTTTGAAATAAT : GCATATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTAACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAACTCTGAAG : GAGAGTATCATTGTCCGGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAG : GCAGTTAAAGAACTGAATATCAAAACAAAGAACTGGAAGGAGCTTCTCACTGATGAAGCATTCTCTAGAGAAGACCTTATAACAATTCAA : AATCCTAATGCACTGGACACC</gDNA_template>
            <first_frame> I  Y  L  I  L  *  N  G  I  A  T  R  S  N  F  K  N  T  V  N  K  I  S  C  F  L  E  N  K  S  V  L  L  K  P  *  F  R  E  I  I  V  F  Y  K  K  G  I  M  G  K  K  Q  H  S  K  D  R  M  F  I  T  K  T  E  W  A  T  E  W  G  G  A  K  S  K  E  L  K  T  P  F  K  R  L  P  F  Y  C  C  A :   L  T  F  T  P  F  E  D  P  V  C  T  K  D  G  N  V  F  E  I  M :   H  I  V  P  Y  I  R  K  Y  G  R  N  P  V  T  G  A  P  M  K  Q  E  D  L  I  P  L  T  F  H  K  N  S  E   : G  E  Y  H  C  P  V  L  N  K  V  F  T  E  F  T  H  I  V  A  V  R  T  T  G  N  V  F  C  Y  E  :  A  V  K  E  L  N  I  K  T  K  N  W  K  E  L  L  T  D  E  A  F  S  R  E  D  L  I  T  I  Q  :  N  P  N  A  L  D  T </first_frame>
            <second_frame>  F  I  *  Y  C  K  T  V  S  P  Q  E  A  I  S  R  T  Q  S  T  R  F  L  V  S  W  K  I  K  V  F  C  *  N  P  N  S  E  R  L  *  S  F  T  R  K  A  S  W  G  R  N  N  T  V  K  I  E  C  L  *  P  R  Q  N  G  Q  L  N  G  V  A  L  N  R  K  N  L  K  P  L  L  N  G  F  P  S  I  A  A   : L  L  H  L  H  R  S  R  T  Q  Y  A  Q  K  M  A  M  F  L  K  *   : C  I  *  F  H  T  S  G  N  M  G  G  I  Q  *  L  G  H  L  *  S  K  K  T  *  F  L  L  L  S  T  R  T  L  K  :  E  S  I  I  V  R  S  *  T  R  F  L  Q  S  S  H  I  *  L  L  *  E  L  R  E  M  F  S  V  M  R :   Q  L  K  N  *  I  S  K  Q  R  T  G  R  S  F  S  L  M  K  H  S  L  E  K  T  L  *  Q  F  K :   I  L  M  H  W  T   </second_frame>
            <third_frame>   L  S  D  T  V  K  R  Y  R  H  K  K  Q  F  Q  E  H  S  Q  Q  D  F  L  F  L  G  K  *  K  C  S  A  K  T  L  I  Q  R  D  Y  S  L  L  Q  E  R  H  H  G  E  E  T  T  Q  *  R  S  N  V  Y  N  Q  D  R  M  G  N  *  M  G  W  R  *  I  E  R  T  *  N  P  F  *  T  A  S  L  L  L  L  R  :  S  Y  I  Y  T  V  R  G  P  S  M  H  K  R  W  Q  C  F  *  N  N  :  A  Y  S  S  I  H  Q  E  I  W  E  E  S  S  N  W  G  T  Y  E  A  R  R  L  N  S  S  Y  F  P  Q  E  L  *  R :   R  V  S  L  S  G  L  E  Q  G  F  Y  R  V  H  T  Y  S  C  C  K  N  Y  G  K  C  F  L  L  *   : G  S  *  R  T  E  Y  Q  N  K  E  L  E  G  A  S  H  *  *  S  I  L  *  R  R  P  Y  N  N  S   : K  S  *  C  T  G  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31039" stop="31202"/>
                    <exon start="31299" stop="31361"/>
                    <exon start="31452" stop="31555"/>
                    <exon start="31914" stop="32005"/>
                    <exon start="32109" stop="32198"/>
                    <exon start="32291" stop="32311"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FREIIVFYKKGIMGKKQHSKDRMFITKTEWATEWGGAKSKELKTPFKRLPFYCCALTFTPFEDPVCTKDGNVFEIMHIVPYIRKYGRNPVTGAPMKQEDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVRTTGNVFCYEAVKELNIKTKNWKELLTDEAFSREDLITIQNPNALDT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="41307" PGL_stop="41886"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41307" e_stop="41886"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41307" e_stop="41886" e_length="580"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41307" stop="41886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SSR123" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGCTTTGAACCAAAATCACTAAAGGTACTACTACTAGTCTTGTACATTTATTGTTTGATGTGGCAAGAGAGATACGTAACCCTTTTAGTGTTAAATGGATACTTTGTTTAGGTTAGTTAGCCTTCAACAACAACAACAACAACAATCTGATCAATACTCTTTTAACTCCAGCAGAACTTCAAGCAGCTCTAGATCTTCTAACAAACAAAACAGCACATACAATTATCATCCACATCATAATCATCAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGATGATTTCTCTTCTTCTTCTTCTAAACACAACAACTATCCTCCTCCTCATTACAATCAATATCAACAAATCTCCACACCCACAACTACAAGCAGTACCCCAACACATCAATCTCAATCTCAATATGATCATCAATTCTCCCCAGCACGTGATTTAAATCTCGAATTCGCTTCCTCATTTTCTGGAAAATGGGCCACAGACATTCTTCTAGAAACTTCTCGTGCCATAGCCGATAAGAACAGTACACGTGTCCAACAGCTCATGTGGATGTTGAATGAGCTGAGCTCCCCCTATGGAG</gDNA_template>
            <first_frame> D  A  L  N  Q  N  H  *  R  Y  Y  Y  *  S  C  T  F  I  V  *  C  G  K  R  D  T  *  P  F  *  C  *  M  D  T  L  F  R  L  V  S  L  Q  Q  Q  Q  Q  Q  Q  S  D  Q  Y  S  F  N  S  S  R  T  S  S  S  S  R  S  S  N  K  Q  N  S  T  Y  N  Y  H  P  H  H  N  H  Q  D  E  E  C  F  N  F  F  M  D  E  D  D  F  S  S  S  S  S  K  H  N  N  Y  P  P  P  H  Y  N  Q  Y  Q  Q  I  S  T  P  T  T  T  S  S  T  P  T  H  Q  S  Q  S  Q  Y  D  H  Q  F  S  P  A  R  D  L  N  L  E  F  A  S  S  F  S  G  K  W  A  T  D  I  L  L  E  T  S  R  A  I  A  D  K  N  S  T  R  V  Q  Q  L  M  W  M  L  N  E  L  S  S  P  Y  G  </first_frame>
            <second_frame>  M  L  *  T  K  I  T  K  G  T  T  T  S  L  V  H  L  L  F  D  V  A  R  E  I  R  N  P  F  S  V  K  W  I  L  C  L  G  *  L  A  F  N  N  N  N  N  N  N  L  I  N  T  L  L  T  P  A  E  L  Q  A  A  L  D  L  L  T  N  K  T  A  H  T  I  I  I  H  I  I  I  I  K  T  K  N  A  S  T  F  S  W  M  K  M  I  S  L  L  L  L  L  N  T  T  T  I  L  L  L  I  T  I  N  I  N  K  S  P  H  P  Q  L  Q  A  V  P  Q  H  I  N  L  N  L  N  M  I  I  N  S  P  Q  H  V  I  *  I  S  N  S  L  P  H  F  L  E  N  G  P  Q  T  F  F  *  K  L  L  V  P  *  P  I  R  T  V  H  V  S  N  S  S  C  G  C  *  M  S  *  A  P  P  M  E </second_frame>
            <third_frame>   C  F  E  P  K  S  L  K  V  L  L  L  V  L  Y  I  Y  C  L  M  W  Q  E  R  Y  V  T  L  L  V  L  N  G  Y  F  V  *  V  S  *  P  S  T  T  T  T  T  T  I  *  S  I  L  F  *  L  Q  Q  N  F  K  Q  L  *  I  F  *  Q  T  K  Q  H  I  Q  L  S  S  T  S  *  S  S  R  R  R  M  L  Q  L  F  H  G  *  R  *  F  L  F  F  F  F  *  T  Q  Q  L  S  S  S  S  L  Q  S  I  S  T  N  L  H  T  H  N  Y  K  Q  Y  P  N  T  S  I  S  I  S  I  *  S  S  I  L  P  S  T  *  F  K  S  R  I  R  F  L  I  F  W  K  M  G  H  R  H  S  S  R  N  F  S  C  H  S  R  *  E  Q  Y  T  C  P  T  A  H  V  D  V  E  *  A  E  L  P  L  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41403" stop="41885"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDTLFRLVSLQQQQQQQSDQYSFNSSRTSSSSRSSNKQNSTYNYHPHHNHQDEECFNFFMDEDDFSSSSSKHNNYPPPHYNQYQQISTPTTTSSTPTHQSQSQYDHQFSPARDLNLEFASSFSGKWATDILLETSRAIADKNSTRVQQLMWMLNELSSPYG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 147 chains have been computed
$ 
$ memory statistics:
$ 8368 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2092 bytes was the average size of a spliced alignment
$ 9408 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2352 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 147 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:17:04
-->
