<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:15:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332539" ref_strand="+" ref_description="SGN-E332539 [cTOD-18-G9]">
      <seq>tttagtgcatgcctatcttgcaaggcgtgctcttgattacctgattgggttcaacatttctccacttctgtggaggaaattacctggttgtcaatctgctggtcgggttcagtctgctgccctatcacttatatgtgacagagaaatggaaattgatggattcaaaccacaggagtattggacagtcctggttgaatttaagaagaacaaaaacctagatttagccaataactttttgtcgtcccatttgacccattttgataccaagaaattaagtcagttctctgttagctctcataccgaagcaatggaaattgaagggaagataaattcatcaaactttgaagttcttagctctaagataaccaaaaagcagagaaacccctctcctccttatataacatcaacacttcagcaagatgccgcaaacaaattggacttttcatcaacatatacgatgaaacttgcacaaaagctatatgagggaatccagttatctgatggcaagtcaacaggattgataacttacatcagaacagatggcttgcacatttcagatgaagctaccaaggacattcaatcctatatcagtgaaaggtatggacagaattttgcatcaaagaatggtcgcaaatacttcaagaaagtgaagaatgctcaagaagcccatgaagctattagaaccactgatatccgaaggttacccctcaagctttgtcgggtgctggatgatgatgcacttaagctatacaaacttatatgggtcccgtacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="3027" stop="1655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2727" g_stop="1955" g_length="773"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E332539" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2727" e_stop="1955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTGCATGCCTATCTTGCAAGGCGTGCTCTTGATTACCTGATTGGGTTCAACATTTCTCCACTTCTGTGGAGGAAATTACCTGGTTGTCAATCTGCTGGTCGGGTTCAGTCTGCTGCCCTATCACTTATATGTGACAGAGAAATGGAAATTGATGGATTCAAACCACAGGAGTATTGGACAGTCCTGGTTGAATTTAAGAAGAACAAAAACCTAGATTTAGCCAATAACTTTTTGTCGTCCCATTTGACCCATTTTGATACCAAGAAATTAAGTCAGTTCTCTGTTAGCTCTCATACCGAAGCAATGGAAATTGAAGGGAAGATAAATTCATCAAACTTTGAAGTTCTTAGCTCTAAGATAACCAAAAAGCAGAGAAACCCCTCTCCTCCTTATATAACATCAACACTTCAGCAAGATGCCGCAAACAAATTGGACTTTTCATCAACATATACGATGAAACTTGCACAAAAGCTATATGAGGGAATCCAGTTATCTGATGGCAAGTCAACAGGATTGATAACTTACATCAGAACAGATGGCTTGCACATTTCAGATGAAGCTACCAAGGACATTCAATCCTATATCAGTGAAAGGTATGGACAGAATTTTGCATCAAAGAATGGTCGCAAATACTTCAAGAAGGTGAAGAATGCTCAAGAGGCCCATGAAGCTATTAGACCCACTGATATCCGAAGGTTACCCTCAAAGCTTGTCGGGGTGCTGGATGATGATGCACTTAAGCTATACAAACTTATAT-GGTCCCGTACCA</genome_strand>
        <mrna_strand>TTTAGTGCATGCCTATCTTGCAAGGCGTGCTCTTGATTACCTGATTGGGTTCAACATTTCTCCACTTCTGTGGAGGAAATTACCTGGTTGTCAATCTGCTGGTCGGGTTCAGTCTGCTGCCCTATCACTTATATGTGACAGAGAAATGGAAATTGATGGATTCAAACCACAGGAGTATTGGACAGTCCTGGTTGAATTTAAGAAGAACAAAAACCTAGATTTAGCCAATAACTTTTTGTCGTCCCATTTGACCCATTTTGATACCAAGAAATTAAGTCAGTTCTCTGTTAGCTCTCATACCGAAGCAATGGAAATTGAAGGGAAGATAAATTCATCAAACTTTGAAGTTCTTAGCTCTAAGATAACCAAAAAGCAGAGAAACCCCTCTCCTCCTTATATAACATCAACACTTCAGCAAGATGCCGCAAACAAATTGGACTTTTCATCAACATATACGATGAAACTTGCACAAAAGCTATATGAGGGAATCCAGTTATCTGATGGCAAGTCAACAGGATTGATAACTTACATCAGAACAGATGGCTTGCACATTTCAGATGAAGCTACCAAGGACATTCAATCCTATATCAGTGAAAGGTATGGACAGAATTTTGCATCAAAGAATGGTCGCAAATACTTCAAGAAAGTGAAGAATGCTCAAGAAGCCCATGAAGCTATTAGAACCACTGATATCCGAAGGTTACCCCTCAAGCTTTGTCGGGTGCTGGATGATGATGCACTTAAGCTATACAAACTTATATGGGTCCCGTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689329" ref_strand="+" ref_description="SGN-E689329 [t3_tus_84_C14]">
      <seq>cattaaagagtgcatgcctatntngnaaggggtgctcttgccttcaagattgggttcaacatttctccacttctgtggaggaaattacctggttgtcaatctgctggtcgggttcagtctgctgccctatcacttatatgtgacagagaaatggaaattgatggattcaaaccacaggagtattggacagtcctggttgaatttaagaagaacaaaaacctagatttagccaataactttttgtcgtcccatttgacccattttgataccaagaaattaagtcagttctctgttagctctcataccgaagcaatggaaattgaagggaagataaattcatcaaactttgaagttcttagctctaagataaccaaaaagcagagaaacccctctcctccttatataacatcaacacttcagcaagatgccgcaaacaaattggacttttcatcaacatatacgatgaaacttgcacaaaagctatatgagggaatccagttatctgatggcaagtcaacaggattgataacttacatcagaacagatggcttgcacatttcagatgaagctaccaaggacattcaatcctatatcagtgaaaggtatggacagaattttgcatcaaaagaatggtcgcaaatacttcaagaaggtgaagaatgctcaagaggcccatgaagctattagacccactgatatccgaaggttaccctcacagcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="2991" stop="1711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2733" g_stop="2011" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E689329" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2733" e_stop="2011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAATTTAGTGCATGCCTATCTTGCAAGGCGTGCTCTTGATTACCTGATTGGGTTCAACATTTCTCCACTTCTGTGGAGGAAATTACCTGGTTGTCAATCTGCTGGTCGGGTTCAGTCTGCTGCCCTATCACTTATATGTGACAGAGAAATGGAAATTGATGGATTCAAACCACAGGAGTATTGGACAGTCCTGGTTGAATTTAAGAAGAACAAAAACCTAGATTTAGCCAATAACTTTTTGTCGTCCCATTTGACCCATTTTGATACCAAGAAATTAAGTCAGTTCTCTGTTAGCTCTCATACCGAAGCAATGGAAATTGAAGGGAAGATAAATTCATCAAACTTTGAAGTTCTTAGCTCTAAGATAACCAAAAAGCAGAGAAACCCCTCTCCTCCTTATATAACATCAACACTTCAGCAAGATGCCGCAAACAAATTGGACTTTTCATCAACATATACGATGAAACTTGCACAAAAGCTATATGAGGGAATCCAGTTATCTGATGGCAAGTCAACAGGATTGATAACTTACATCAGAACAGATGGCTTGCACATTTCAGATGAAGCTACCAAGGACATTCAATCCTATATCAGTGAAAGGTATGGACAGAATTTTGCATC-AAAGAATGGTCGCAAATACTTCAAGAAGGTGAAGAATGCTCAAGAGGCCCATGAAGCTATTAGACCCACTGATATCCGAAGGTTACCCTCAAAGCTTGT</genome_strand>
        <mrna_strand>CATTAA-AGAGTGCATGCCTATNTNGNAAGGGGTGCTCTTGCCTTCAAGATTGGGTTCAACATTTCTCCACTTCTGTGGAGGAAATTACCTGGTTGTCAATCTGCTGGTCGGGTTCAGTCTGCTGCCCTATCACTTATATGTGACAGAGAAATGGAAATTGATGGATTCAAACCACAGGAGTATTGGACAGTCCTGGTTGAATTTAAGAAGAACAAAAACCTAGATTTAGCCAATAACTTTTTGTCGTCCCATTTGACCCATTTTGATACCAAGAAATTAAGTCAGTTCTCTGTTAGCTCTCATACCGAAGCAATGGAAATTGAAGGGAAGATAAATTCATCAAACTTTGAAGTTCTTAGCTCTAAGATAACCAAAAAGCAGAGAAACCCCTCTCCTCCTTATATAACATCAACACTTCAGCAAGATGCCGCAAACAAATTGGACTTTTCATCAACATATACGATGAAACTTGCACAAAAGCTATATGAGGGAATCCAGTTATCTGATGGCAAGTCAACAGGATTGATAACTTACATCAGAACAGATGGCTTGCACATTTCAGATGAAGCTACCAAGGACATTCAATCCTATATCAGTGAAAGGTATGGACAGAATTTTGCATCAAAAGAATGGTCGCAAATACTTCAAGAAGGTGAAGAATGCTCAAGAGGCCCATGAAGCTATTAGACCCACTGATATCCGAAGGTTACCCTCACAGCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371819" ref_strand="+" ref_description="SGN-E371819 [TUS-30-G3](-)">
      <seq>tcatctagacacctttttatcggtctttaacatatctggcctccctggagaatattaccacaacacaggtaagctatcaaatgatggagacagattcgtcgatggagcaataatagcagccgcaagaacgttgcccacttggtcagatggagatctccctccaattccaagtctagagaggaaagcagtgaaggagctgcaagaagaatgccaccagatgcttgcagaatttcccacaacttctgacgaagaccagaaaatcctagattcgatgcctgaatgcaggagaacattcgaagcagcaataaagtatagattacatcggaaattactgatagagaaggttatacaggccttggacatttaccaagacaggattctgttctaaacatgaataacagcaggagttgaagcaatctttaccagaaatcatgtagccatagaagacgggcgtcaagattatggttccatttcagctatgcagaaagctttatctatcacaatagcttttgcaacattttgagggcttttgttgggggtgggtgtaggaagtagctagtaatggtgtataggtggaaaatgacttataccattagttttggaaagatatgaagtgaagaaaaatgagaagttctctatagaaatcatgatgaaaatgaaggatagctttggtggatatgtttgataacaagtagaagggctcttttgcatgaatgaaatatatgaattctctttaaccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="10202" stop="8329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9902" g_stop="9838" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9837" i_stop="9745" i_length="93">
            <donor d_prob="0.282" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9744" g_stop="9544" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="266" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9543" i_stop="9208" i_length="336">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9207" g_stop="9165" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="309" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9164" i_stop="9061" i_length="104">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9060" g_stop="8622" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="748" r_length="439" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E371819" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9902" e_stop="9838"/>
          <exon e_start="9744" e_stop="9544"/>
          <exon e_start="9207" e_stop="9165"/>
          <exon e_start="9060" e_stop="8622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACAGTATGGGTCTTAAAGAATGTTTTTGATATACTAGAGCTCCTTCACTGATCTAGGTTTGCAATTATGTTTAGAATCCTTGTTTAAAACTTGAAGCAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAGGTAAGCCTGGATTGTGTACTTCTATCTAATGATGCATGTTGAAGAAGAAATATAACTCCATCTTCTATGCGCTATGGTTGTCACCTGTATTTCATGCTAAAAAACAATGTGGATTTATGTATATTGAATTCAGAATCCATCAATCCTAGTACTGACTAACATCATAAGTTTTGGCTTTTGCCACGAATTACAAAGCTTGTAGGCGTCATGCTACACATGGGCTGACACTGTTTACCACTTTTTGTTGATTTCATCGGTTGACTTTGTAACATATTTCATTATTCACGTCATAATGCTGTCCAACAATGTATTCGTTTTCCTGGTTTCTGTGAACAGATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAAGTACGTAATGTATGAAGTATTATTCGTCATTGCATGCAGAGATCATCTTATCTTTGCTTCAATGTGAATGCAGATCTTATTTACATAATGCTTTCGTTTGGCAGGTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGCCATAGAAGACGGGCGTCAAGATTATGGTTCCATTTCAGCTATGCAGAAAGCTTTATCTATCACAATAGCTTTTGCAACATTTTGAGGGCTTTTGTTGGGGGTGGGTGTAGGAAGTAGCTAGTAATGGTGTATAGGTGGAAAATGACTTATACCATTAGTTTTGGAAAGATATGAAGTGAAGAAAAATGAGAAGTTCTCTATAGAAATCATGATGAAAATGAAGGATAGCTTTGGTGGATATGTTTGATAACAAGTAGAAGGGCTCTTTTGCATGAATGAAATATATGAATTCTCTTTAACCAATTCCACT</genome_strand>
        <mrna_strand>TCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACA.............................................................................................CAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAG................................................................................................................................................................................................................................................................................................................................................ATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAA........................................................................................................GTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGCCATAGAAGACGGGCGTCAAGATTATGGTTCCATTTCAGCTATGCAGAAAGCTTTATCTATCACAATAGCTTTTGCAACATTTTGAGGGCTTTTGTTGGGGGTGGGTGTAGGAAGTAGCTAGTAATGGTGTATAGGTGGAAAATGACTTATACCATTAGTTTTGGAAAGATATGAAGTGAAGAAAAATGAGAAGTTCTCTATAGAAATCATGATGAAAATGAAGGATAGCTTTGGTGGATATGTTTGATAACAAGTAGAAGGGCTCTTTTGCATGAATGAAATATATGAATTCTCTTTAACCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371820" ref_strand="+" ref_description="SGN-E371820 [TUS-30-G3]">
      <seq>ccggagatgccaaaattcatctagacacctttttatcggtctttaacatatctggcctccctggagaatattaccacaacacaggtaagctatcaaatgatggagacagattcgtcgatggagcaataatagcagccgcaagaacgttgcccacttggtcagatggagatctccctccaattccaagtctagagaggaaagcagtgaaggagctgcaagaagaatgccaccagatgcttgcagaatttcccacaacttctgacgaagaccagaaaatcctagattcgatgcctgaatgcaggagaacattcgaagcagcaataaagtatagattacatcggaaattactgatagagaaggttatacaggccttggacatttaccaagacaggattctgttctaaacatgaataacagcaggagttgaagcaatctttaccagaaatcatgtagccatagaagacgggcgtcaagattatggttccatttcagctatgcagaaagctttatctatcacaatagcttttgcaacattttgagggcttttgttgggggtgggtgtaggaagtagctagtaatggtgtataggtggaaaatgacttataccattagttttggaaagatatgaagtgaagaaaaatgagaagttctctatagaaatcatgatgaaaatgaaggatagctttggtggatatgtttgataacaagtagaaaggctcttttgcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="10218" stop="8357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9918" g_stop="9838" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9837" i_stop="9745" i_length="93">
            <donor d_prob="0.282" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9744" g_stop="9544" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="282" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9543" i_stop="9208" i_length="336">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9207" g_stop="9165" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="325" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9164" i_stop="9061" i_length="104">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9060" g_stop="8657" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="729" r_length="404" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E371820" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9918" e_stop="9838"/>
          <exon e_start="9744" e_stop="9544"/>
          <exon e_start="9207" e_stop="9165"/>
          <exon e_start="9060" e_stop="8657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGAGATGCCAAAATTCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACAGTATGGGTCTTAAAGAATGTTTTTGATATACTAGAGCTCCTTCACTGATCTAGGTTTGCAATTATGTTTAGAATCCTTGTTTAAAACTTGAAGCAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAGGTAAGCCTGGATTGTGTACTTCTATCTAATGATGCATGTTGAAGAAGAAATATAACTCCATCTTCTATGCGCTATGGTTGTCACCTGTATTTCATGCTAAAAAACAATGTGGATTTATGTATATTGAATTCAGAATCCATCAATCCTAGTACTGACTAACATCATAAGTTTTGGCTTTTGCCACGAATTACAAAGCTTGTAGGCGTCATGCTACACATGGGCTGACACTGTTTACCACTTTTTGTTGATTTCATCGGTTGACTTTGTAACATATTTCATTATTCACGTCATAATGCTGTCCAACAATGTATTCGTTTTCCTGGTTTCTGTGAACAGATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAAGTACGTAATGTATGAAGTATTATTCGTCATTGCATGCAGAGATCATCTTATCTTTGCTTCAATGTGAATGCAGATCTTATTTACATAATGCTTTCGTTTGGCAGGTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGCCATAGAAGACGGGCGTCAAGATTATGGTTCCATTTCAGCTATGCAGAAAGCTTTATCTATCACAATAGCTTTTGCAACATTTTGAGGGCTTTTGTTGGGGGTGGGTGTAGGAAGTAGCTAGTAATGGTGTATAGGTGGAAAATGACTTATACCATTAGTTTTGGAAAGATATGAAGTGAAGAAAAATGAGAAGTTCTCTATAGAAATCATGATGAAAATGAAGGATAGCTTTGGTGGATATGTTTGATAACAAGTAGAAGGGCTCTTTTGCATGA</genome_strand>
        <mrna_strand>CCGGAGATGCCAAAATTCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACA.............................................................................................CAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAG................................................................................................................................................................................................................................................................................................................................................ATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAA........................................................................................................GTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGCCATAGAAGACGGGCGTCAAGATTATGGTTCCATTTCAGCTATGCAGAAAGCTTTATCTATCACAATAGCTTTTGCAACATTTTGAGGGCTTTTGTTGGGGGTGGGTGTAGGAAGTAGCTAGTAATGGTGTATAGGTGGAAAATGACTTATACCATTAGTTTTGGAAAGATATGAAGTGAAGAAAAATGAGAAGTTCTCTATAGAAATCATGATGAAAATGAAGGATAGCTTTGGTGGATATGTTTGATAACAAGTAGAAAGGCTCTTTTGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283122" ref_strand="+" ref_description="SGN-E283122 [cLER-17-M1]">
      <seq>ccggagatgccaaaattcatctagacacctttttatcggtctttaacatatctggcctccctggagaatattaccacaacacaggtaagctatcaaatgatggagacagattcgtcgatggagcaataatagcagccgcaagaacgttgcccacttggtcagatggagatctccctccaattccaagtctagagaggaaagcagtgaaggagctgcaagaagaatgccaccagatgcttgcagaatttcccacaacttctgacgaagaccagaaaatcctagattcgatgcctgaatgcaggagaacattcgaagcagcaataaagtatagattacatcggaaattactgatagagaaggttatacaggccttggacatttaccaagacaggattctgttctaaacatgaataacagcaggagttgaagcaatctttaccagaaatcatgtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="10218" stop="8632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9918" g_stop="9838" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9837" i_stop="9745" i_length="93">
            <donor d_prob="0.282" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9744" g_stop="9544" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="282" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9543" i_stop="9208" i_length="336">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9207" g_stop="9165" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="325" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9164" i_stop="9061" i_length="104">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9060" g_stop="8932" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="454" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E283122" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9918" e_stop="9838"/>
          <exon e_start="9744" e_stop="9544"/>
          <exon e_start="9207" e_stop="9165"/>
          <exon e_start="9060" e_stop="8932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGAGATGCCAAAATTCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACAGTATGGGTCTTAAAGAATGTTTTTGATATACTAGAGCTCCTTCACTGATCTAGGTTTGCAATTATGTTTAGAATCCTTGTTTAAAACTTGAAGCAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAGGTAAGCCTGGATTGTGTACTTCTATCTAATGATGCATGTTGAAGAAGAAATATAACTCCATCTTCTATGCGCTATGGTTGTCACCTGTATTTCATGCTAAAAAACAATGTGGATTTATGTATATTGAATTCAGAATCCATCAATCCTAGTACTGACTAACATCATAAGTTTTGGCTTTTGCCACGAATTACAAAGCTTGTAGGCGTCATGCTACACATGGGCTGACACTGTTTACCACTTTTTGTTGATTTCATCGGTTGACTTTGTAACATATTTCATTATTCACGTCATAATGCTGTCCAACAATGTATTCGTTTTCCTGGTTTCTGTGAACAGATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAAGTACGTAATGTATGAAGTATTATTCGTCATTGCATGCAGAGATCATCTTATCTTTGCTTCAATGTGAATGCAGATCTTATTTACATAATGCTTTCGTTTGGCAGGTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGC</genome_strand>
        <mrna_strand>CCGGAGATGCCAAAATTCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACA.............................................................................................CAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAG................................................................................................................................................................................................................................................................................................................................................ATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAA........................................................................................................GTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E224362" ref_strand="+" ref_description="SGN-E224362 [cLEL-27-B2](-)">
      <seq>attatcaattcaaccaatcccgagacagattcggacttgaggttggcgtgccttcttttatatgcttttgattgcaaggacaacttttggcagctatacggagacttcttgcctagtgctgatgaatgcactagctttcttctagctaccgaggtctggatatgagtatcatccaaatttcagtgcattcaattaatgtaatattttgtggaagattctatagaaaatgctatgcattcacaaaattattctgcactttgttatggtgttctgctgaggttcaagtttgagtaactcgaaatgtgaattagaaaagcttttgtgatattcacactgttatgtgacctttgctattagtgggttctaatttataacaaaagtttcttcggctggaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="14713" stop="13476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14413" g_stop="14390" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14389" i_stop="14146" i_length="244">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14145" g_stop="13777" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="393" r_length="369" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="394" polyA_stop="422"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E224362" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14413" e_stop="14390"/>
          <exon e_start="14145" e_stop="13777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATCAATTCAACCAATCCCGAGGTAAAAGGATGCATTTTCCTTTTAAATATTTTAATTTTCCTACTAAATATTATTTAATGGAACACATGGGAGAATATTTATCCACATTTTCTTTGATTGGATAAAAATAAAAATTAGACGTCTTACCTTTTCCCTAATGGTACACATGAGAGGATTTGTTTTTATGCTCTAAATTTTTTCATTTTCTTTTTGGTTTTCTAAGATTTCTTGTGACTTTTTAATATTGATTACCTTCTTATGGCAGACAGATTCGGACTTGAGGTTGGCGTGCCTTCTTTTATATGCTTTTGATTGCAAGGACAACTTTTGGCAGCTATACGGAGACTTCTTGCCTAGTGCTGATGAATGCACTAGCTTTCTTCTAGCTACCGAGGTCTGGATATGAGTATCATCCAAATTTCAGTGCATTCAATTAATGTAATATTTTGTGGAAGATTCTATAGAAAATGCTATGCATTCACAAAATTATTCTGCACTTTGTTATGGTGTTCTGCTGAGGTTCAAGTTTGAGTAACTCGAAATGTGAATTAGAAAAGCTTTTGTGATATTCACACTGTTATGTGACCTTTGCTATTAGTGGGTTCTAATTTATAACAAAAGTTTCTTCGACTGA</genome_strand>
        <mrna_strand>ATTATCAATTCAACCAATCCCGAG....................................................................................................................................................................................................................................................ACAGATTCGGACTTGAGGTTGGCGTGCCTTCTTTTATATGCTTTTGATTGCAAGGACAACTTTTGGCAGCTATACGGAGACTTCTTGCCTAGTGCTGATGAATGCACTAGCTTTCTTCTAGCTACCGAGGTCTGGATATGAGTATCATCCAAATTTCAGTGCATTCAATTAATGTAATATTTTGTGGAAGATTCTATAGAAAATGCTATGCATTCACAAAATTATTCTGCACTTTGTTATGGTGTTCTGCTGAGGTTCAAGTTTGAGTAACTCGAAATGTGAATTAGAAAAGCTTTTGTGATATTCACACTGTTATGTGACCTTTGCTATTAGTGGGTTCTAATTTATAACAAAAGTTTCTTCGGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E224862" ref_strand="+" ref_description="SGN-E224862 [cLEL-27-B2](-)">
      <seq>cttttatatgcttttgattgcaaggacaacttttggcagctatacggagacttcttgcctagtgctgatgaatgcactagcttttttctagctaccgaggtctggatatgagtatcatcccaatttcagtgcattcaattaatgtaatattttgtggaagattctatagaaaatgctatgcattcccaaaattattctgccctttgttatggtgttctgctgaggttcaagtttgagtaactcgaaatgtgaattagaaaagcttttgtgatattcacactgttatgtgacctttgctattagtgggttctaatttataacaaaagtttcttcggctggaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="14415" stop="13476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14115" g_stop="13777" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="340" polyA_stop="368"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E224862" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14115" e_stop="13777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTATATGCTTTTGATTGCAAGGACAACTTTTGGCAGCTATACGGAGACTTCTTGCCTAGTGCTGATGAATGCACTAGCTTTCTTCTAGCTACCGAGGTCTGGATATGAGTATCATCCAAATTTCAGTGCATTCAATTAATGTAATATTTTGTGGAAGATTCTATAGAAAATGCTATGCATTCACAAAATTATTCTGCACTTTGTTATGGTGTTCTGCTGAGGTTCAAGTTTGAGTAACTCGAAATGTGAATTAGAAAAGCTTTTGTGATATTCACACTGTTATGTGACCTTTGCTATTAGTGGGTTCTAATTTATAACAAAAGTTTCTTCGACTGA</genome_strand>
        <mrna_strand>CTTTTATATGCTTTTGATTGCAAGGACAACTTTTGGCAGCTATACGGAGACTTCTTGCCTAGTGCTGATGAATGCACTAGCTTTTTTCTAGCTACCGAGGTCTGGATATGAGTATCATCCCAATTTCAGTGCATTCAATTAATGTAATATTTTGTGGAAGATTCTATAGAAAATGCTATGCATTCCCAAAATTATTCTGCCCTTTGTTATGGTGTTCTGCTGAGGTTCAAGTTTGAGTAACTCGAAATGTGAATTAGAAAAGCTTTTGTGATATTCACACTGTTATGTGACCTTTGCTATTAGTGGGTTCTAATTTATAACAAAAGTTTCTTCGGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314474" ref_strand="+" ref_description="SGN-E314474 [cTOB-1-O1]">
      <seq>ccctgggcactctctcactgacagtagagtggataacgtttcaagaacccaaattccatcgatgtatgaatcttctttactgaaattccactaaatttttagctcactctcaagaatggtttcttccaccattctaattcagcaaccgacgaacttcttccaccagccagagcttcaccatcagctatggagaggtctgcagcatggatgtgttgcatcattgcagaaacaacctattttggtatgtaatagtaacaagagaaacagacctttgagagtttcttcaagtgctaatggtgctgttacttcttccactttggaggcctatgattcttctccgtctccttctgcatttcctctttttacacccccttctcaaccccaagatactcccgcttctcagttggaactggcagatcctgatttctacaaaataggatatgttagaagttttcgagcctacgggattgaattcagggagggaccaaatgggtatggagtgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="16820" stop="14727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16520" g_stop="16337" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16336" i_stop="16242" i_length="95">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16241" g_stop="16023" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="403" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16022" i_stop="15130" i_length="893">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15129" g_stop="15027" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="506" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E314474" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16520" e_stop="16337"/>
          <exon e_start="16241" e_stop="16023"/>
          <exon e_start="15129" e_stop="15027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTGGGCACTCTCTCACTGACAGTAGAGTGGATAACGTTTCAAGAACCCAAATTCCATCGATGTATGAATCTTCTTTACTGAAATTCCACTAAATTTTTAGCTCACTCTCAAGAATGGTTTCTTCCACCATTCTAATTCAGCAACCGACGAACTTCTTCCACCAGCCAGAGCTTCACCATCAGGTTAGGCCTTCGCCCCCACAAAACCAAATCATTCAAGAATGAATCTTTTTGCTTTTTGATTTTATGGGTGTTTGATTTTTTAATAATTGAACCAGCTATGGAGAGGTCTGCAGCATGGATGTGTTGCATCATTGCAGAAACAACCTATTTTGGTATGTAATAGTAACAAGAGAAACAGACCTTTGAGAGTTTCTTCAAGTGCTAATGGTGCTGTTACTTCTTCCACTTTGGAGGCCTATGATTCTTCTCCGTCTCCTTCTGCATTTCCTCTTTTTACACCCCCTTCTCAACCCCAAGATACTCCCGCTTCTCAGGTATTTTCTACTTGCCCCTTCTGTTTCATGTTCTTGAAGTTCAAGTTTAGTTTAATCACATCTTGTTACTTTCTGTGTGATAAGTGCTGTTTTCTTTTGGTAAGCTCACTGTATAAGTGCAATATGCAACACTTTTATGTACTCTTTTTTGTAGTTAGAGTTTTGGCACTGCATACCTTTTCCTCTTCAGTCATGGTTTCTTTTACTTTAATAGAATGCCAAACAAACAATGGACAACAATAAGCACTAGTCTCTCAATAAATTGAAGGAAGTGACAGCCAGGCAGTTGATGTTTGGAAAAGATAGGAGTTACACTTTGAAGATCGATGGAATTGTTCTTATGAATTGGTTTTGTTCCTCATTCAGATTTTCTTCACAAATTATTTGGTTCTAGGTCAGGTCCCATATAAATTTTTGGTGATTACTGTGTTAGAAATACAAAATGTTCTACATCAGGTATAGGGGAATCATATACCTAAAGCATTCTCTACTACTCCTTCACTGCATAAATTTTTCTTTAATATGTCGGAATTTCTAACCAATTAGTAAGTCCGTTCTCACACGTGTGAGTCTGCATTGGTTTCAGATATATAGAATGCCTAACATCTGGTGTTTAGGGGCATCCAAAGGGTTATGATGATTTTGAGCTACTCCCCAATTACCTTAAGATTTTCACTTAGATGCTCATGTTCGTTCTCACGTTCTCATGCATAGATATCCCATTTCTATTGTTACATAGTCAAACTAATGGTTGGAATCCCTCTACTTTCTCGGTCTTACATCCTTTGAGAAGCTGATGAACATATATTTTCCTATTTGATTATTTCAAATTATCCTTATTTTCTCCTGTTCTAATTGTTGATGATGGTGGTATAACATTTTCATATGAACAGTTGGAACTGGCAGATCCTGATTTCTACAAAATAGGATATGTTAGAAGTTTTCGAGCCTACGGGATTGAATTCAGGGAGGGACCAGATGGGTATGGAGTGTTTG</genome_strand>
        <mrna_strand>CCCTGGGCACTCTCTCACTGACAGTAGAGTGGATAACGTTTCAAGAACCCAAATTCCATCGATGTATGAATCTTCTTTACTGAAATTCCACTAAATTTTTAGCTCACTCTCAAGAATGGTTTCTTCCACCATTCTAATTCAGCAACCGACGAACTTCTTCCACCAGCCAGAGCTTCACCATCAG...............................................................................................CTATGGAGAGGTCTGCAGCATGGATGTGTTGCATCATTGCAGAAACAACCTATTTTGGTATGTAATAGTAACAAGAGAAACAGACCTTTGAGAGTTTCTTCAAGTGCTAATGGTGCTGTTACTTCTTCCACTTTGGAGGCCTATGATTCTTCTCCGTCTCCTTCTGCATTTCCTCTTTTTACACCCCCTTCTCAACCCCAAGATACTCCCGCTTCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAACTGGCAGATCCTGATTTCTACAAAATAGGATATGTTAGAAGTTTTCGAGCCTACGGGATTGAATTCAGGGAGGGACCAAATGGGTATGGAGTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366996" ref_strand="+" ref_description="SGN-E366996 [cLPT-6-F23]">
      <seq>tctctcactgacagtagagtggataacgtttcaagaacccaaattccatcgatgtatgaatcttctttactgaaattccactaaatttttagctcactctcaagaatggtttcatccaccattctaattcagcaaccgacgaacttcttccaccagccagagcttcaccatcagctatggagaggtctgcagcatggatgtgttgcatcattgcagaaacaacctattttggtatgtaatagtaacaagagaaacagacctttgagagtttcttcaagtgctaatggtgctgttacttcttccactttggaggcctatgattcttctccgtctccttctgcatttcctctttttacacccccttctcaaccccaagatactcccgcttctcagttggaactggcagatcctgatttctacaaaataggttatgttagaagttttcgagcctacgggattgaattcagggagggaccacatgggtatggagtgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="16810" stop="14727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16510" g_stop="16337" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16336" i_stop="16242" i_length="95">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16241" g_stop="16023" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="393" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16022" i_stop="15130" i_length="893">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15129" g_stop="15027" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="496" r_length="103" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E366996" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16510" e_stop="16337"/>
          <exon e_start="16241" e_stop="16023"/>
          <exon e_start="15129" e_stop="15027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCACTGACAGTAGAGTGGATAACGTTTCAAGAACCCAAATTCCATCGATGTATGAATCTTCTTTACTGAAATTCCACTAAATTTTTAGCTCACTCTCAAGAATGGTTTCTTCCACCATTCTAATTCAGCAACCGACGAACTTCTTCCACCAGCCAGAGCTTCACCATCAGGTTAGGCCTTCGCCCCCACAAAACCAAATCATTCAAGAATGAATCTTTTTGCTTTTTGATTTTATGGGTGTTTGATTTTTTAATAATTGAACCAGCTATGGAGAGGTCTGCAGCATGGATGTGTTGCATCATTGCAGAAACAACCTATTTTGGTATGTAATAGTAACAAGAGAAACAGACCTTTGAGAGTTTCTTCAAGTGCTAATGGTGCTGTTACTTCTTCCACTTTGGAGGCCTATGATTCTTCTCCGTCTCCTTCTGCATTTCCTCTTTTTACACCCCCTTCTCAACCCCAAGATACTCCCGCTTCTCAGGTATTTTCTACTTGCCCCTTCTGTTTCATGTTCTTGAAGTTCAAGTTTAGTTTAATCACATCTTGTTACTTTCTGTGTGATAAGTGCTGTTTTCTTTTGGTAAGCTCACTGTATAAGTGCAATATGCAACACTTTTATGTACTCTTTTTTGTAGTTAGAGTTTTGGCACTGCATACCTTTTCCTCTTCAGTCATGGTTTCTTTTACTTTAATAGAATGCCAAACAAACAATGGACAACAATAAGCACTAGTCTCTCAATAAATTGAAGGAAGTGACAGCCAGGCAGTTGATGTTTGGAAAAGATAGGAGTTACACTTTGAAGATCGATGGAATTGTTCTTATGAATTGGTTTTGTTCCTCATTCAGATTTTCTTCACAAATTATTTGGTTCTAGGTCAGGTCCCATATAAATTTTTGGTGATTACTGTGTTAGAAATACAAAATGTTCTACATCAGGTATAGGGGAATCATATACCTAAAGCATTCTCTACTACTCCTTCACTGCATAAATTTTTCTTTAATATGTCGGAATTTCTAACCAATTAGTAAGTCCGTTCTCACACGTGTGAGTCTGCATTGGTTTCAGATATATAGAATGCCTAACATCTGGTGTTTAGGGGCATCCAAAGGGTTATGATGATTTTGAGCTACTCCCCAATTACCTTAAGATTTTCACTTAGATGCTCATGTTCGTTCTCACGTTCTCATGCATAGATATCCCATTTCTATTGTTACATAGTCAAACTAATGGTTGGAATCCCTCTACTTTCTCGGTCTTACATCCTTTGAGAAGCTGATGAACATATATTTTCCTATTTGATTATTTCAAATTATCCTTATTTTCTCCTGTTCTAATTGTTGATGATGGTGGTATAACATTTTCATATGAACAGTTGGAACTGGCAGATCCTGATTTCTACAAAATAGGATATGTTAGAAGTTTTCGAGCCTACGGGATTGAATTCAGGGAGGGACCAGATGGGTATGGAGTGTTTG</genome_strand>
        <mrna_strand>TCTCTCACTGACAGTAGAGTGGATAACGTTTCAAGAACCCAAATTCCATCGATGTATGAATCTTCTTTACTGAAATTCCACTAAATTTTTAGCTCACTCTCAAGAATGGTTTCATCCACCATTCTAATTCAGCAACCGACGAACTTCTTCCACCAGCCAGAGCTTCACCATCAG...............................................................................................CTATGGAGAGGTCTGCAGCATGGATGTGTTGCATCATTGCAGAAACAACCTATTTTGGTATGTAATAGTAACAAGAGAAACAGACCTTTGAGAGTTTCTTCAAGTGCTAATGGTGCTGTTACTTCTTCCACTTTGGAGGCCTATGATTCTTCTCCGTCTCCTTCTGCATTTCCTCTTTTTACACCCCCTTCTCAACCCCAAGATACTCCCGCTTCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAACTGGCAGATCCTGATTTCTACAAAATAGGTTATGTTAGAAGTTTTCGAGCCTACGGGATTGAATTCAGGGAGGGACCACATGGGTATGGAGTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="23769" stop="24514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24069" g_stop="24221" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24069" e_stop="24221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAAGTTAGAGAAAATTGTATTTCACTACAATTGTATAATTTGTAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246839" ref_strand="+" ref_description="SGN-E246839 [cLEF-41-A10]">
      <seq>tcaaaagtagagtgaggaaagattggtctgattcagaaagtagtgaagacgatggtagtgataatgaaagtgacaagagcagtgaagatgcaaatgctggtaatatccttgaacctgatgatacagaggaatttttgagtgatggtctcaccagatctaacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="26704" stop="27468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27004" g_stop="27168" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E246839" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>165</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27004" e_stop="27168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGTAGAGTGAGGAAAGATTGGTCTGATTCAGAAAGTAGTGAAGACGATGGTAGTGATAATGAAAGTGACAAGAGCAGTGAAGATGCAAATGCTGGTAATATCCTTGAACCTGATGATACAGAGGAATTTTTGAGTGATGGTCTCACCAGATCTAACAATG</genome_strand>
        <mrna_strand>TCAAAAGTAGAGTGAGGAAAGATTGGTCTGATTCAGAAAGTAGTGAAGACGATGGTAGTGATAATGAAAGTGACAAGAGCAGTGAAGATGCAAATGCTGGTAATATCCTTGAACCTGATGATACAGAGGAATTTTTGAGTGATGGTCTCACCAGATCTAACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368631" ref_strand="+" ref_description="SGN-E368631 [TUS-22-B20]">
      <seq>aattgtttctctttctctcaagaacctcttttttctactgctgttttggggcgattcatttgttcatcatttgtctaaattgggttgcatttccggtccttctgcctcttctttcaactggaggcaatgtcgcaaggttacgcaattgagctctactttgatcctgcacttgaaaaccaggtcttgaaagcctggaatgtattggctcggcgccagattagcactcagcttattgaaattgagtctagacctcacattaccctcttctcgagtccgtttcttgatccatcgaagattgagaacattgtaaagaatttttcgtccaagcaagaatcattgcctctgtcctttggttcaattggaagcctcccaagtgacgacaatgttctatttcttgccccaactccaactttgtctctccttcagttccactcacaactgtatgatgctatgaaaaaggagggcattgagattgcggaggagcatcgtcctgatacatggattccttattgcccagtagctgacgaagtgcctaaaactcgtatgggtgaggcattcactgttttgagggatctgaaattacctgttgctggatatgctacggaaattgcacttggtgagtatccaccagttcgtgaagcattttcttttgtgcttggtatacagttgaaccatgaggcttcaggcatgtaattgtgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="33845" stop="35515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34145" g_stop="34265" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34266" i_stop="34633" i_length="368">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34634" g_stop="35215" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="702" r_length="581" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E368631" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34145" e_stop="34265"/>
          <exon e_start="34634" e_stop="35215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTTTCTCTTTCTCTCAAGAACCTCTTTTTTCTACTGCTGTTTTGGGGCGATTCATTTGTTCATCATTTGTCTAAATTGGGTTGCATTTCCGGTCCTTCTGCCTCTTCTTTCAACTGGGTATGTCTCAATTTTCACCTAATTCTCTGGTTTCTTTAGGGTTTTAATCTTTTTCTTCATATTGTTAAGTTTCGTGATTCTTTTCTGTCTGGATTTACTTTTTTAGTGTATTTCTCTTCGTTATTTATTCTTCTGTATATGAGATCCCTATTCATTTTTCTGGGTTTTAGTATTTGATGATTTTACTTTACTGTACTTGATGTTATACGTTGTTGCTTTGTTAGAATTACTAGCTTTATTCGTTTTCTTTAATTCTGCTCATAGTGTACCATTGGGGTCTTCCTTGTTACTTGGTGAAAGTTTGTGATACTGTTTATTTTATAGTGATTTCTTGATTTATTTTTTGTGTTTGTTCTGAATCTTGATAGAGGCAATGTCGCAAGGTTACGCAATTGAGCTCTACTTTGATCCTGCACTTGAAAACCAGGTCTTGAAAGCCTGGAATGTATTGGCTCGGCGCCAGATTAGCACTCAGCTTATTGAAATTGAGTCTAGACCTCACATTACCCTCTTCTCGAGTCCGTTTCTTGATCCATCGAAGATTGAGAACATTGTAAAGAATTTTTCGTCCAAGCAAGAATCATTGCCTCTGTCCTTTGGTTCAATTGGAAGCCTCCCAAGTGACGACAATGTTCTATTTCTTGCCCCAACTCCAACTTTGTCTCTCCTTCAGTTCCACTCACAACTGTATGATGCTATGAAAAAGGAGGGCATTGAGATTGCGGAGGAGCATCGTCCTGATACATGGATTCCTTATTGCCCAGTAGCTGACGAAGTGCCTAAAACTCGTATGGGTGAGGCATTCACTGTTTTGAGGGATCTGAAATTACCTGTTGCTGGATATGCTACGGAAATTGCACTTGTTGAGTATCCACCAGTTCGTGAAGCATTTTCTTTTGTGCTTGGTAATACAGTTGAACCATGAGGCTTCAGGCATGTAATTGTGTTGA</genome_strand>
        <mrna_strand>AATTGTTTCTCTTTCTCTCAAGAACCTCTTTTTTCTACTGCTGTTTTGGGGCGATTCATTTGTTCATCATTTGTCTAAATTGGGTTGCATTTCCGGTCCTTCTGCCTCTTCTTTCAACTGG................................................................................................................................................................................................................................................................................................................................................................................AGGCAATGTCGCAAGGTTACGCAATTGAGCTCTACTTTGATCCTGCACTTGAAAACCAGGTCTTGAAAGCCTGGAATGTATTGGCTCGGCGCCAGATTAGCACTCAGCTTATTGAAATTGAGTCTAGACCTCACATTACCCTCTTCTCGAGTCCGTTTCTTGATCCATCGAAGATTGAGAACATTGTAAAGAATTTTTCGTCCAAGCAAGAATCATTGCCTCTGTCCTTTGGTTCAATTGGAAGCCTCCCAAGTGACGACAATGTTCTATTTCTTGCCCCAACTCCAACTTTGTCTCTCCTTCAGTTCCACTCACAACTGTATGATGCTATGAAAAAGGAGGGCATTGAGATTGCGGAGGAGCATCGTCCTGATACATGGATTCCTTATTGCCCAGTAGCTGACGAAGTGCCTAAAACTCGTATGGGTGAGGCATTCACTGTTTTGAGGGATCTGAAATTACCTGTTGCTGGATATGCTACGGAAATTGCACTTGGTGAGTATCCACCAGTTCGTGAAGCATTTTCTTTTGTGCTTGGT-ATACAGTTGAACCATGAGGCTTCAGGCATGTAATTGTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238552" ref_strand="+" ref_description="SGN-E238552 [cLED-17-D13]">
      <seq>aattgtttctctttctctcattatcctcttttttctactgctgttttggggcgattcatttgttcatcatttgtctaaattgggttgcatttccggtccttctgcctcttctttcaactggaggcaatgtcgcaaggttacgcaattgagctctactttgatcctgcacttgaaaaccaggtcttgaaagcctggaatgtattggctcggcgccagattagcactcagcttattgaaattgagtctagacctcacattaccctcttctcgagtccgtttcttgatccatcgaagattgagaacattgtaaagaatttttcgtccaagcaagaatcattgcctctgtcctttggttcaattggaagcctcccaagtgacgacaatgttctatttcttgccccaactccaactttgtctctccttcagttccactcacaactgtatgatgctattgaaaaggagggcattgagattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="33845" stop="35288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34145" g_stop="34265" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34266" i_stop="34633" i_length="368">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34634" g_stop="34988" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="476" r_length="355" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E238552" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34145" e_stop="34265"/>
          <exon e_start="34634" e_stop="34988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTTTCTCTTTCTCTCAAGAACCTCTTTTTTCTACTGCTGTTTTGGGGCGATTCATTTGTTCATCATTTGTCTAAATTGGGTTGCATTTCCGGTCCTTCTGCCTCTTCTTTCAACTGGGTATGTCTCAATTTTCACCTAATTCTCTGGTTTCTTTAGGGTTTTAATCTTTTTCTTCATATTGTTAAGTTTCGTGATTCTTTTCTGTCTGGATTTACTTTTTTAGTGTATTTCTCTTCGTTATTTATTCTTCTGTATATGAGATCCCTATTCATTTTTCTGGGTTTTAGTATTTGATGATTTTACTTTACTGTACTTGATGTTATACGTTGTTGCTTTGTTAGAATTACTAGCTTTATTCGTTTTCTTTAATTCTGCTCATAGTGTACCATTGGGGTCTTCCTTGTTACTTGGTGAAAGTTTGTGATACTGTTTATTTTATAGTGATTTCTTGATTTATTTTTTGTGTTTGTTCTGAATCTTGATAGAGGCAATGTCGCAAGGTTACGCAATTGAGCTCTACTTTGATCCTGCACTTGAAAACCAGGTCTTGAAAGCCTGGAATGTATTGGCTCGGCGCCAGATTAGCACTCAGCTTATTGAAATTGAGTCTAGACCTCACATTACCCTCTTCTCGAGTCCGTTTCTTGATCCATCGAAGATTGAGAACATTGTAAAGAATTTTTCGTCCAAGCAAGAATCATTGCCTCTGTCCTTTGGTTCAATTGGAAGCCTCCCAAGTGACGACAATGTTCTATTTCTTGCCCCAACTCCAACTTTGTCTCTCCTTCAGTTCCACTCACAACTGTATGATGCTATGAAAAAGGAGGGCATTGAGATTGC</genome_strand>
        <mrna_strand>AATTGTTTCTCTTTCTCTCATTATCCTCTTTTTTCTACTGCTGTTTTGGGGCGATTCATTTGTTCATCATTTGTCTAAATTGGGTTGCATTTCCGGTCCTTCTGCCTCTTCTTTCAACTGG................................................................................................................................................................................................................................................................................................................................................................................AGGCAATGTCGCAAGGTTACGCAATTGAGCTCTACTTTGATCCTGCACTTGAAAACCAGGTCTTGAAAGCCTGGAATGTATTGGCTCGGCGCCAGATTAGCACTCAGCTTATTGAAATTGAGTCTAGACCTCACATTACCCTCTTCTCGAGTCCGTTTCTTGATCCATCGAAGATTGAGAACATTGTAAAGAATTTTTCGTCCAAGCAAGAATCATTGCCTCTGTCCTTTGGTTCAATTGGAAGCCTCCCAAGTGACGACAATGTTCTATTTCTTGCCCCAACTCCAACTTTGTCTCTCCTTCAGTTCCACTCACAACTGTATGATGCTATTGAAAAGGAGGGCATTGAGATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553502" ref_strand="+" ref_description="SGN-E553502 [cTSC-1-F11]">
      <seq>gtttctctttctctcaagaacctcttttttctactgctgttttggggcgattcatttgttcatcatttgtctaaattgggttgcatttccggtccttctgcctcttctttcaactggaggcaatgtcgcaaggttacgcaattgagctctactttgatcctgcacttgaaaaccaggtcttgaaagcctggaatgtattggctcggcgccagattagcactcagcttattgaaattgagtctagacctcacattaccctcttctcgagtccgtttcttgatccatcgaagattgagaacattgtaaagaatttttcgtccaagcaagaatcattgcctctgtcctttggttcaattggaagcctcccaagtgacgacaatgttctatttcttgccctaactccaactttgtctctccttcagttccactcacaactgtatgatgctatgaaaaaggagggcattgagattgcggaggagcatcgtcctgatacatggattccttattgcccagtagctgacgaagtgcctaaaactcgtatgggtgaggcattcactgttttgagggatctgaaattacctgttgctggatatgctacggaaattgcacttgttgagtatccaccagttcgtgaagcattttcttttgtgcttggtaatacagttgaaccatgaggcttcaggcatgtaattgtgttgattttagtttaggtttttaccttctgtttcctacatagttgctgttttagaacctgatatagatggttaagagtgctattgtcgttgctaaatcgtcatctgctttgatgaaatattgaggtcatttctgattcttttcttatcgtccgtacttgcaattgagttttgatctcatatgtcagtgttgttgataataacatgcttattttcttcctatcaatggaaaatctctgttggaacggctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="33849" stop="35759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34149" g_stop="34265" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34266" i_stop="34633" i_length="368">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34634" g_stop="35461" g_length="828"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="945" r_length="828" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E553502" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>945</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34149" e_stop="34265"/>
          <exon e_start="34634" e_stop="35461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTCTTTCTCTCAAGAACCTCTTTTTTCTACTGCTGTTTTGGGGCGATTCATTTGTTCATCATTTGTCTAAATTGGGTTGCATTTCCGGTCCTTCTGCCTCTTCTTTCAACTGGGTATGTCTCAATTTTCACCTAATTCTCTGGTTTCTTTAGGGTTTTAATCTTTTTCTTCATATTGTTAAGTTTCGTGATTCTTTTCTGTCTGGATTTACTTTTTTAGTGTATTTCTCTTCGTTATTTATTCTTCTGTATATGAGATCCCTATTCATTTTTCTGGGTTTTAGTATTTGATGATTTTACTTTACTGTACTTGATGTTATACGTTGTTGCTTTGTTAGAATTACTAGCTTTATTCGTTTTCTTTAATTCTGCTCATAGTGTACCATTGGGGTCTTCCTTGTTACTTGGTGAAAGTTTGTGATACTGTTTATTTTATAGTGATTTCTTGATTTATTTTTTGTGTTTGTTCTGAATCTTGATAGAGGCAATGTCGCAAGGTTACGCAATTGAGCTCTACTTTGATCCTGCACTTGAAAACCAGGTCTTGAAAGCCTGGAATGTATTGGCTCGGCGCCAGATTAGCACTCAGCTTATTGAAATTGAGTCTAGACCTCACATTACCCTCTTCTCGAGTCCGTTTCTTGATCCATCGAAGATTGAGAACATTGTAAAGAATTTTTCGTCCAAGCAAGAATCATTGCCTCTGTCCTTTGGTTCAATTGGAAGCCTCCCAAGTGACGACAATGTTCTATTTCTTGCCCCAACTCCAACTTTGTCTCTCCTTCAGTTCCACTCACAACTGTATGATGCTATGAAAAAGGAGGGCATTGAGATTGCGGAGGAGCATCGTCCTGATACATGGATTCCTTATTGCCCAGTAGCTGACGAAGTGCCTAAAACTCGTATGGGTGAGGCATTCACTGTTTTGAGGGATCTGAAATTACCTGTTGCTGGATATGCTACGGAAATTGCACTTGTTGAGTATCCACCAGTTCGTGAAGCATTTTCTTTTGTGCTTGGTAATACAGTTGAACCATGAGGCTTCAGGCATGTAATTGTGTTGATTTTAGTTTAGGTTTTTACCTTCTGTTTCCTACATAGTTGCTGTTTTAGAACCTGATATAGATGGTTAAGAGTGCTATTGTCGTTGCTAAATCGTCATCTGCTTTGATGAAATATTGAGGTCATTTCTGATTCTTTTCTTATCGTCCGTACTTGCAATTGAGGTTTTGATCTCATATGTCAGTGTTGTTGATAATAACATGCTTATTTTCTTCTTATCAATGGAAAATCTCTGTTGG-ACCGCTATT</genome_strand>
        <mrna_strand>GTTTCTCTTTCTCTCAAGAACCTCTTTTTTCTACTGCTGTTTTGGGGCGATTCATTTGTTCATCATTTGTCTAAATTGGGTTGCATTTCCGGTCCTTCTGCCTCTTCTTTCAACTGG................................................................................................................................................................................................................................................................................................................................................................................AGGCAATGTCGCAAGGTTACGCAATTGAGCTCTACTTTGATCCTGCACTTGAAAACCAGGTCTTGAAAGCCTGGAATGTATTGGCTCGGCGCCAGATTAGCACTCAGCTTATTGAAATTGAGTCTAGACCTCACATTACCCTCTTCTCGAGTCCGTTTCTTGATCCATCGAAGATTGAGAACATTGTAAAGAATTTTTCGTCCAAGCAAGAATCATTGCCTCTGTCCTTTGGTTCAATTGGAAGCCTCCCAAGTGACGACAATGTTCTATTTCTTGCCCTAACTCCAACTTTGTCTCTCCTTCAGTTCCACTCACAACTGTATGATGCTATGAAAAAGGAGGGCATTGAGATTGCGGAGGAGCATCGTCCTGATACATGGATTCCTTATTGCCCAGTAGCTGACGAAGTGCCTAAAACTCGTATGGGTGAGGCATTCACTGTTTTGAGGGATCTGAAATTACCTGTTGCTGGATATGCTACGGAAATTGCACTTGTTGAGTATCCACCAGTTCGTGAAGCATTTTCTTTTGTGCTTGGTAATACAGTTGAACCATGAGGCTTCAGGCATGTAATTGTGTTGATTTTAGTTTAGGTTTTTACCTTCTGTTTCCTACATAGTTGCTGTTTTAGAACCTGATATAGATGGTTAAGAGTGCTATTGTCGTTGCTAAATCGTCATCTGCTTTGATGAAATATTGAGGTCATTTCTGATTCTTTTCTTATCGTCCGTACTTGCAATTGA-GTTTTGATCTCATATGTCAGTGTTGTTGATAATAACATGCTTATTTTCTTCCTATCAATGGAAAATCTCTGTTGGAACGGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241120" ref_strand="+" ref_description="SGN-E241120 [cLED-26-D3]">
      <seq>ttctctcaagaacctcttttttctactgctgttttggggcgattcatttgttcatcatttgtctaaattgggttgcatttccggtccttctgcctcttctttcaactggaggcaatgtcgcaaggttacgcaattgagctctactttgatcctgcacttgaaaaccaggtcttgaaagcctggaatgtattggctcggcgccagattagcactcagcttattgaaattgagtctagacctcacattaccctcttctcgagtccgtttcttgatccatcgaagattgagaacattgtaaagaatttttcgtccaagcaagaatcattgcctctgtcctttggttcaattggaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="33857" stop="35178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34157" g_stop="34265" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34266" i_stop="34633" i_length="368">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34634" g_stop="34878" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="354" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E241120" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34157" e_stop="34265"/>
          <exon e_start="34634" e_stop="34878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCAAGAACCTCTTTTTTCTACTGCTGTTTTGGGGCGATTCATTTGTTCATCATTTGTCTAAATTGGGTTGCATTTCCGGTCCTTCTGCCTCTTCTTTCAACTGGGTATGTCTCAATTTTCACCTAATTCTCTGGTTTCTTTAGGGTTTTAATCTTTTTCTTCATATTGTTAAGTTTCGTGATTCTTTTCTGTCTGGATTTACTTTTTTAGTGTATTTCTCTTCGTTATTTATTCTTCTGTATATGAGATCCCTATTCATTTTTCTGGGTTTTAGTATTTGATGATTTTACTTTACTGTACTTGATGTTATACGTTGTTGCTTTGTTAGAATTACTAGCTTTATTCGTTTTCTTTAATTCTGCTCATAGTGTACCATTGGGGTCTTCCTTGTTACTTGGTGAAAGTTTGTGATACTGTTTATTTTATAGTGATTTCTTGATTTATTTTTTGTGTTTGTTCTGAATCTTGATAGAGGCAATGTCGCAAGGTTACGCAATTGAGCTCTACTTTGATCCTGCACTTGAAAACCAGGTCTTGAAAGCCTGGAATGTATTGGCTCGGCGCCAGATTAGCACTCAGCTTATTGAAATTGAGTCTAGACCTCACATTACCCTCTTCTCGAGTCCGTTTCTTGATCCATCGAAGATTGAGAACATTGTAAAGAATTTTTCGTCCAAGCAAGAATCATTGCCTCTGTCCTTTGGTTCAATTGGAAGC</genome_strand>
        <mrna_strand>TTCTCTCAAGAACCTCTTTTTTCTACTGCTGTTTTGGGGCGATTCATTTGTTCATCATTTGTCTAAATTGGGTTGCATTTCCGGTCCTTCTGCCTCTTCTTTCAACTGG................................................................................................................................................................................................................................................................................................................................................................................AGGCAATGTCGCAAGGTTACGCAATTGAGCTCTACTTTGATCCTGCACTTGAAAACCAGGTCTTGAAAGCCTGGAATGTATTGGCTCGGCGCCAGATTAGCACTCAGCTTATTGAAATTGAGTCTAGACCTCACATTACCCTCTTCTCGAGTCCGTTTCTTGATCCATCGAAGATTGAGAACATTGTAAAGAATTTTTCGTCCAAGCAAGAATCATTGCCTCTGTCCTTTGGTTCAATTGGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207831" ref_strand="+" ref_description="SGN-E207831 [cLEC-32-H20]">
      <seq>ttgagctctactttgatcctgcacttgaaaaccaggtcttgaaagcctggaatgtattggctcggcgccagattagcactcagcttattgaaattgagtctagacctcacattaccctcttctcgagtccgtttcttgatccatcgaagattgagaacattgtaaagaatttttcgtccaagcaagaatcattgcctctgtcctttggttcaattggaagcctcccaagtgacgacaatgttctatttcttgccccaactccaactttgtctctccttcagttccactcacaactgtatgatgctatgaaaaaggagggcattgagattgcggaggagcatcgtcctgatacatggattccttattgcccagtagctgacgaagtgcctaaaactcgtatgggtgaggcattcactgttttgagggatctgaaattacctgttgctggatatgctacggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="34358" stop="35420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34658" g_stop="35120" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E207831" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34658" e_stop="35120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGCTCTACTTTGATCCTGCACTTGAAAACCAGGTCTTGAAAGCCTGGAATGTATTGGCTCGGCGCCAGATTAGCACTCAGCTTATTGAAATTGAGTCTAGACCTCACATTACCCTCTTCTCGAGTCCGTTTCTTGATCCATCGAAGATTGAGAACATTGTAAAGAATTTTTCGTCCAAGCAAGAATCATTGCCTCTGTCCTTTGGTTCAATTGGAAGCCTCCCAAGTGACGACAATGTTCTATTTCTTGCCCCAACTCCAACTTTGTCTCTCCTTCAGTTCCACTCACAACTGTATGATGCTATGAAAAAGGAGGGCATTGAGATTGCGGAGGAGCATCGTCCTGATACATGGATTCCTTATTGCCCAGTAGCTGACGAAGTGCCTAAAACTCGTATGGGTGAGGCATTCACTGTTTTGAGGGATCTGAAATTACCTGTTGCTGGATATGCTACGGAAAT</genome_strand>
        <mrna_strand>TTGAGCTCTACTTTGATCCTGCACTTGAAAACCAGGTCTTGAAAGCCTGGAATGTATTGGCTCGGCGCCAGATTAGCACTCAGCTTATTGAAATTGAGTCTAGACCTCACATTACCCTCTTCTCGAGTCCGTTTCTTGATCCATCGAAGATTGAGAACATTGTAAAGAATTTTTCGTCCAAGCAAGAATCATTGCCTCTGTCCTTTGGTTCAATTGGAAGCCTCCCAAGTGACGACAATGTTCTATTTCTTGCCCCAACTCCAACTTTGTCTCTCCTTCAGTTCCACTCACAACTGTATGATGCTATGAAAAAGGAGGGCATTGAGATTGCGGAGGAGCATCGTCCTGATACATGGATTCCTTATTGCCCAGTAGCTGACGAAGTGCCTAAAACTCGTATGGGTGAGGCATTCACTGTTTTGAGGGATCTGAAATTACCTGTTGCTGGATATGCTACGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368630" ref_strand="-" ref_description="SGN-E368630 [TUS-22-B20](-)">
      <seq>tttttttttttttttttaatgtctctatggtaatagcggtccaacagagattttccattgataagaagaaaataagcatgttattatcaacaacactgacatatgagatcaaaacctcaattgcaagtacggacgataagaaaagaatcagaaatgacctcaatatttcatcaaagcagatgacgatttagcaacgacaatagcactcttaaccatctatatcaggttctaaaacagcaactatgtaggaaacagaaggtaaaaacctaaactaaaatcaacacaattacatgcctgaagcctcatggttcaactgtattaccaagcacaaaagaaaatgctttacgaactggtggatactcaacaagtgcaatttccgtagcatatccagcaacaggtaatttcagatccctcaaaacagtgaatgcctcacccatacgagttttaggcactttgtcagctactgggcaataaggaatccatgtatcaggacgatgctcctccgcaatctcaatgcccttctttttcatagcatcatacagttgtgagtggaactgaaggagagacaaagttggagttggggcaagaaatagaacattgtcgtcacttgggaggcttccaattgaaccaaaggacagaggcaatgattcttgcttggacgaaaaattctttacaatgttctcaatcttcgatggatcaagaaacggactcgagaagagggtaatgtgaggtctagactcaatttcaataagctgagtgctaatctggcgccgagccaatacattccaggctttcaagacctggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="60367" stop="34385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35890" g_stop="35879" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.417"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35878" i_stop="35481" i_length="398">
            <donor d_prob="0.947" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35480" g_stop="34685" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="808" r_length="796" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E368630" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368630" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35890" e_stop="35879"/>
          <exon e_start="35480" e_stop="34685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCCAGCTTGTATATCAATCAACTTCTGCCTCATGTTTTTCCAAATGTTATTTGCTTTACCAACCATAAAAAACTGGTAGATTCTGTACTTCCCTCACATGATTTAATCCGATCAAAATCAACAAGCACCACAATATCTTACAATCTAAAGAAATCATGTGATCTTTGAGAGTTGCAAATCAAAAGGTGTACCCACTGATGTCAAAATCAACATTATTAAACACAAGCAAAATCTATATTCAACATCATTTAACACAAGCAAATTCACCTCACATGATTCAAGCTTGCTAAACTTAACAAGAACTTAAATATACTACACTCGAATGAAACAAACCACATTAAAGACTGAAAAAGTAGAACACATAAGCCAAGACCATGTACAAGATTTACAAGATAGAACACATAAGCATATAATGTCTCTATGGTAATAGCGGTCCAACAGAGATTTTCCATTGATAAGAAGAAAATAAGCATGTTATTATCAACAACACTGACATATGAGATCAAAACCTCAATTGCAAGTACGGACGATAAGAAAAGAATCAGAAATGACCTCAATATTTCATCAAAGCAGATGACGATTTAGCAACGACAATAGCACTCTTAACCATCTATATCAGGTTCTAAAACAGCAACTATGTAGGAAACAGAAGGTAAAAACCTAAACTAAAATCAACACAATTACATGCCTGAAGCCTCATGGTTCAACTGTATTACCAAGCACAAAAGAAAATGCTTCACGAACTGGTGGATACTCAACAAGTGCAATTTCCGTAGCATATCCAGCAACAGGTAATTTCAGATCCCTCAAAACAGTGAATGCCTCACCCATACGAGTTTTAGGCACTTCGTCAGCTACTGGGCAATAAGGAATCCATGTATCAGGACGATGCTCCTCCGCAATCTCAATGCCCTCCTTTTTCATAGCATCATACAGTTGTGAGTGGAACTGAAGGAGAGACAAAGTTGGAGTTGGGGCAAGAAATAGAACATTGTCGTCACTTGGGAGGCTTCCAATTGAACCAAAGGACAGAGGCAATGATTCTTGCTTGGACGAAAAATTCTTTACAATGTTCTCAATCTTCGATGGATCAAGAAACGGACTCGAGAAGAGGGTAATGTGAGGTCTAGACTCAATTTCAATAAGCTGAGTGCTAATCTGGCGCCGAGCCAATACATTCCAGGCTTTCAAGACCTGGTTTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTT..............................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAATGTCTCTATGGTAATAGCGGTCCAACAGAGATTTTCCATTGATAAGAAGAAAATAAGCATGTTATTATCAACAACACTGACATATGAGATCAAAACCTCAATTGCAAGTACGGACGATAAGAAAAGAATCAGAAATGACCTCAATATTTCATCAAAGCAGATGACGATTTAGCAACGACAATAGCACTCTTAACCATCTATATCAGGTTCTAAAACAGCAACTATGTAGGAAACAGAAGGTAAAAACCTAAACTAAAATCAACACAATTACATGCCTGAAGCCTCATGGTTCAACTGTATTACCAAGCACAAAAGAAAATGCTTTACGAACTGGTGGATACTCAACAAGTGCAATTTCCGTAGCATATCCAGCAACAGGTAATTTCAGATCCCTCAAAACAGTGAATGCCTCACCCATACGAGTTTTAGGCACTTTGTCAGCTACTGGGCAATAAGGAATCCATGTATCAGGACGATGCTCCTCCGCAATCTCAATGCCCTTCTTTTTCATAGCATCATACAGTTGTGAGTGGAACTGAAGGAGAGACAAAGTTGGAGTTGGGGCAAGAAATAGAACATTGTCGTCACTTGGGAGGCTTCCAATTGAACCAAAGGACAGAGGCAATGATTCTTGCTTGGACGAAAAATTCTTTACAATGTTCTCAATCTTCGATGGATCAAGAAACGGACTCGAGAAGAGGGTAATGTGAGGTCTAGACTCAATTTCAATAAGCTGAGTGCTAATCTGGCGCCGAGCCAATACATTCCAGGCTTTCAAGACCTGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351057" ref_strand="+" ref_description="SGN-E351057 [cTOS-6-M16]">
      <seq>gagcatcgtcctgatacatggattccttattgcccagtagctgacgaagtgcctaaaactcgtatgggtgaggcattcactgttttgagggatctgaaattacctgttgctggatatgctacggaaattgcacttgttgagtatccaccagttcgtgaagcattttcttttgtgcttggtaatacagttgaaccatgaggcttcaggcatgtaattgtgttgattttagtttaggtttttaccttctgtttcctacatagttgctgttttagaacctgatatagatggttaagagtgctattgtcgttgctaaatcgtcatctgctttgatgaaatattgaggtcatttctgattcttttcttatcgtccgtacttgcaattgaggttttgatctcatatgtcagtgttgttgataataacatgcttattttcttcttatcaatggaaaatctctgttggaccgctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="34693" stop="35771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34993" g_stop="35471" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E351057" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34993" e_stop="35471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATCGTCCTGATACATGGATTCCTTATTGCCCAGTAGCTGACGAAGTGCCTAAAACTCGTATGGGTGAGGCATTCACTGTTTTGAGGGATCTGAAATTACCTGTTGCTGGATATGCTACGGAAATTGCACTTGTTGAGTATCCACCAGTTCGTGAAGCATTTTCTTTTGTGCTTGGTAATACAGTTGAACCATGAGGCTTCAGGCATGTAATTGTGTTGATTTTAGTTTAGGTTTTTACCTTCTGTTTCCTACATAGTTGCTGTTTTAGAACCTGATATAGATGGTTAAGAGTGCTATTGTCGTTGCTAAATCGTCATCTGCTTTGATGAAATATTGAGGTCATTTCTGATTCTTTTCTTATCGTCCGTACTTGCAATTGAGGTTTTGATCTCATATGTCAGTGTTGTTGATAATAACATGCTTATTTTCTTCTTATCAATGGAAAATCTCTGTTGGACCGCTATTACCATAGAGA</genome_strand>
        <mrna_strand>GAGCATCGTCCTGATACATGGATTCCTTATTGCCCAGTAGCTGACGAAGTGCCTAAAACTCGTATGGGTGAGGCATTCACTGTTTTGAGGGATCTGAAATTACCTGTTGCTGGATATGCTACGGAAATTGCACTTGTTGAGTATCCACCAGTTCGTGAAGCATTTTCTTTTGTGCTTGGTAATACAGTTGAACCATGAGGCTTCAGGCATGTAATTGTGTTGATTTTAGTTTAGGTTTTTACCTTCTGTTTCCTACATAGTTGCTGTTTTAGAACCTGATATAGATGGTTAAGAGTGCTATTGTCGTTGCTAAATCGTCATCTGCTTTGATGAAATATTGAGGTCATTTCTGATTCTTTTCTTATCGTCCGTACTTGCAATTGAGGTTTTGATCTCATATGTCAGTGTTGTTGATAATAACATGCTTATTTTCTTCTTATCAATGGAAAATCTCTGTTGGACCGCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302479" ref_strand="+" ref_description="SGN-E302479 [cLEW-27-L2]">
      <seq>ttaggcatcacaccgatattgccccttccgggacccccgttggatgggaatctgggaccaacacctctagctcaggtggtagaggaaccaaatgatgttaagatggaagagaatgaagaggaaaacaataaggacaaggttccagcatctgttgcaacacatacgagaactattggtatcatttatccccctcctgatattaggagtattgttgacaagacttcacagtttgtggcgaagaatggtccggaatttgagaagaggattgttctaaataacgctggcaatgcaaaattcaacttcctgaatgcttctgatccttaccatgcctattatcagcaccgtttggctgaagctcgcgcacagaatcagggttctggagagcagcctactcagccagaagacaaagaagcaacccctgctcctaccgctgatgatgctgaggcaactgcaaaacctgacccatcagctcaatttagacctgtcagaaaggttcttgagccacctgaggcagagcaatatactgttcgactccctgaaaggatcacaggtgaagaaatggatatcataaagctgacatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="38830" stop="40012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39130" g_stop="39712" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E302479" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39130" e_stop="39712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGCATCACACCGATATTGCCCCTTCCGGCACCCCCGTTGGATGGGAATCTGGGACCAACACCTCTAGCTCAGGTGGTAGAGGAACCAAATGATGTTAAGATGGAAGAGAATGAAGAGGAAAACAATAAGGACAAGGTTCCAGCATCTGTTGCAACACATACGAGAACTATTGGTATCATTTATCCCCCTCCTGATATTAGGAGTATTGTTGACAAGACTTCACAGTTTGTGGCGAAGAATGGTCCGGAATTTGAGAAGAGGATTGTTCTAAATAACGCTGGCAATGCAAAATTCAACTTCCTGAATGCTTCTGATCCTTACCATGCCTATTATCAGCACCGTTTGGCTGAAGCTCGCGCACAGAATCAGGGTTCTGGAGAGCAGCCTACTCAGCCAGAAGACAAAGAAGCAACCCCTGCTCCTACCGCTGATGATGCTGAGGCAACTGCAAAACCTGACCCATCAGCTCAATTTAGACCTGTCAGAAAGGTTCTTGAGCCACCTGAGGCAGAGCAATATACTGTTCGACTCCCTGAAGGGATCACAGGTGAAGAAATGGATATCATAAAGCTGACATCAC</genome_strand>
        <mrna_strand>TTAGGCATCACACCGATATTGCCCCTTCCGGGACCCCCGTTGGATGGGAATCTGGGACCAACACCTCTAGCTCAGGTGGTAGAGGAACCAAATGATGTTAAGATGGAAGAGAATGAAGAGGAAAACAATAAGGACAAGGTTCCAGCATCTGTTGCAACACATACGAGAACTATTGGTATCATTTATCCCCCTCCTGATATTAGGAGTATTGTTGACAAGACTTCACAGTTTGTGGCGAAGAATGGTCCGGAATTTGAGAAGAGGATTGTTCTAAATAACGCTGGCAATGCAAAATTCAACTTCCTGAATGCTTCTGATCCTTACCATGCCTATTATCAGCACCGTTTGGCTGAAGCTCGCGCACAGAATCAGGGTTCTGGAGAGCAGCCTACTCAGCCAGAAGACAAAGAAGCAACCCCTGCTCCTACCGCTGATGATGCTGAGGCAACTGCAAAACCTGACCCATCAGCTCAATTTAGACCTGTCAGAAAGGTTCTTGAGCCACCTGAGGCAGAGCAATATACTGTTCGACTCCCTGAAAGGATCACAGGTGAAGAAATGGATATCATAAAGCTGACATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246550" ref_strand="+" ref_description="SGN-E246550 [cLEF-45-O12]">
      <seq>ctgaagagagggatctggactaaagggacccaactaagtatgttgtctgtcctataaccggtgagctcatacctattaatgagatgtctgaacatatgaggatctctctcattgatccaaagtacaaggaacagaaggacaggatgtttgcgaagattaaggagacgactcttgcgcaggatgatgagatttctaggaacattgttggacttgcaagaacccgtccggatatatttggtaccacagaagaagaagtttcaaatgcggtcaaggctgagattgagaaaaagaaggaagagccgaagcaagtcatatgggatggtcacacaggtagcattggtcgcactgcgaaccaggcaatgtctcagaacagtgatgatcagaatgatgctgcaaatgatgcaagaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="40049" stop="41021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40328" g_stop="40740" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E246550" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40328" e_stop="40740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGAGAGAATCCTGGCAGAAAGGGACCCAACTAAGTATGTTGTCTCTCCTATAACTGGTGAGTTAATACCTATTAGTGAGATGTCTGAACATATGAGGATCTCTCTCATTGATCCGAAGTACAAGGAACAGAAGGACAGGATGTTTGCGAAGATTAAGGAAACGACTCTTGCTCAAGATGATGAGATCTCTAGGAACATTGTTGGGCTTGCACGAACTCGTCCAGATATATTTGGTACTACGGAAGAAGAAGTTTCAAATGCGGTCAAGGCTGAGATTGAGAAAAAAATAGAAGAGCCGAAGCAGGTCATATGGGATGGTCACACAGGTAGCATTGGCCGCACTGCAAGCCAGGCAATGTCTCAGAACAGTGGAGAGGATCAGAATGATGCTGCAAATGATGTAAGAAAC</genome_strand>
        <mrna_strand>CTGAAGAGAGGGATCTGGACTAAAGGGACCCAACTAAGTATGTTGTCTGTCCTATAACCGGTGAGCTCATACCTATTAATGAGATGTCTGAACATATGAGGATCTCTCTCATTGATCCAAAGTACAAGGAACAGAAGGACAGGATGTTTGCGAAGATTAAGGAGACGACTCTTGCGCAGGATGATGAGATTTCTAGGAACATTGTTGGACTTGCAAGAACCCGTCCGGATATATTTGGTACCACAGAAGAAGAAGTTTCAAATGCGGTCAAGGCTGAGATTGAGAAAAAGAAGGAAGAGCCGAAGCAAGTCATATGGGATGGTCACACAGGTAGCATTGGTCGCACTGCGAACCAGGCAATGTCTCAGAACAGT---GATGATCAGAATGATGCTGCAAATGATGCAAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202738" ref_strand="+" ref_description="SGN-E202738 [cLEB-1-C16]">
      <seq>gcacgaggtcttccttctgttaggccactacctccacctcctgggcttgcgctgaatattcctaggcctcctaatacattccagtattccacacctaccatagctggtgctgctccgcctccacctcaacctcctatggttaacatgattcctcaggttcggcccccacctcctcccatgctacaactacaaggtcagcaaaacctcatggtcaatcgtcccccaatgcctccatcaatggctatgagttcgcatacccttactattccaccacctcctggatcacagtttacacctatgggagcacctcggccctttgttccccacccgatgtcccagccgggaatgtctatggtcccgcctcctcctatgccccaaggaatgccaccacctcctccaccagaagaagctcctcctctccctgaagagccagagccgaagaggcaaaagcttgacgagtctgttctcattcctgaagaccagtttttggctcagcattcgggacctgcaaggatcaatgtatctgtgccgaatactgatgaagggaatctcaaaggacaagttctggaaatcactgtgcaatctctgaccgaaaccattgcaagtctgaaagagaagatttctggggagatccagcttcctgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="40473" stop="41811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40771" g_stop="41271" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41272" i_stop="41367" i_length="96">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41368" g_stop="41511" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="645" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E202738" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40771" e_stop="41271"/>
          <exon e_start="41368" e_stop="41511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCCGGTCTTCCTTCTGTTAGGCCACTACCTCCACCTCCTGGGCTTGCGCTGAATATTCCTAGGCCTCCTAATACATTCCAGTATTCCACACCTACCATAGCTGGTGCTGCTCCGCCTCCACCTCAACCTCCTATGGTTAACATGATTCCTCAGGTTCGGCCCCCACCTCCTCCCATGCTACAACTACAAGGTCAGCAAAACCTCATGGTCAATCGTCCCCCAATGCCTCCATCAATGGCTATGAGTTCGCATACCCTTACTATTCCACCACCTCCTGGATCACAGTTTACACCTATGGGAGCACCTCGGCCCTTTGTTCCCCACCCGATGTCCCAGCCGGGAATGTCTATGGTCCCGCCTCCTCCTATGCCCCAAGGAATGCCACCACCTCCTCCACCAGAAGAAGCTCCTCCTCTCCCTGAAGAGCCAGAGCCGAAGAGGCAAAAGCTTGACGAGTCTGTTCTCATTCCTGAAGACCAGTTTTTGGCTCAGCATTCGGTGAGGATAGCTTTAAAAGAACACTTTTACATAATTGTCTGTTTCATGTTCTCTTACATCCATGGAAATTTTATTTCCTGCTGGGTTATATTGCAGGGACCTGCAAGGATCAATGTATCTGTGCCGAATACTGATGAAGGGAATCTCAAAGGACAAGTTCTGGAAATCACTGTGCAATCTCTGACCGAAACCATTGCAAGTCTGAAAGAGAAGATTTCTGGGGAGATCCAGCTTCCTGCG</genome_strand>
        <mrna_strand>GCACGAGGTCTTCCTTCTGTTAGGCCACTACCTCCACCTCCTGGGCTTGCGCTGAATATTCCTAGGCCTCCTAATACATTCCAGTATTCCACACCTACCATAGCTGGTGCTGCTCCGCCTCCACCTCAACCTCCTATGGTTAACATGATTCCTCAGGTTCGGCCCCCACCTCCTCCCATGCTACAACTACAAGGTCAGCAAAACCTCATGGTCAATCGTCCCCCAATGCCTCCATCAATGGCTATGAGTTCGCATACCCTTACTATTCCACCACCTCCTGGATCACAGTTTACACCTATGGGAGCACCTCGGCCCTTTGTTCCCCACCCGATGTCCCAGCCGGGAATGTCTATGGTCCCGCCTCCTCCTATGCCCCAAGGAATGCCACCACCTCCTCCACCAGAAGAAGCTCCTCCTCTCCCTGAAGAGCCAGAGCCGAAGAGGCAAAAGCTTGACGAGTCTGTTCTCATTCCTGAAGACCAGTTTTTGGCTCAGCATTCG................................................................................................GGACCTGCAAGGATCAATGTATCTGTGCCGAATACTGATGAAGGGAATCTCAAAGGACAAGTTCTGGAAATCACTGTGCAATCTCTGACCGAAACCATTGCAAGTCTGAAAGAGAAGATTTCTGGGGAGATCCAGCTTCCTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281531" ref_strand="+" ref_description="SGN-E281531 [cLEL-1-J21](-)">
      <seq>ggtgctcccataggtgtaaactgtgatccaggaggtggtggaatagtaagggtatgcgaactcatagccattgatggaggcattgggggacgattgaccatgaggttttgctgaccttgtagttgtagcatgggaggaggtgggggccgaacctgaggaatcatgttaaccataggaggttgaggtggaggcggagcagcaccagctatggtaggtgtggaatactggaatcgattaggaggcctaggaatattcagcgcaagcccaggaggtggaggtagtggcctaacagaaggaagacctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="41378" stop="40473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41078" g_stop="40771" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E281531" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41078" e_stop="40771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCTCCCATAGGTGTAAACTGTGATCCAGGAGGTGGTGGAATAGTAAGGGTATGCGAACTCATAGCCATTGATGGAGGCATTGGGGGACGATTGACCATGAGGTTTTGCTGACCTTGTAGTTGTAGCATGGGAGGAGGTGGGGGCCGAACCTGAGGAATCATGTTAACCATAGGAGGTTGAGGTGGAGGCGGAGCAGCACCAGCTATGGTAGGTGTGGAATACTGGAATGTATTAGGAGGCCTAGGAATATTCAGCGCAAGCCCAGGAGGTGGAGGTAGTGGCCTAACAGAAGGAAGACCGGGTCT</genome_strand>
        <mrna_strand>GGTGCTCCCATAGGTGTAAACTGTGATCCAGGAGGTGGTGGAATAGTAAGGGTATGCGAACTCATAGCCATTGATGGAGGCATTGGGGGACGATTGACCATGAGGTTTTGCTGACCTTGTAGTTGTAGCATGGGAGGAGGTGGGGGCCGAACCTGAGGAATCATGTTAACCATAGGAGGTTGAGGTGGAGGCGGAGCAGCACCAGCTATGGTAGGTGTGGAATACTGGAATCGATTAGGAGGCCTAGGAATATTCAGCGCAAGCCCAGGAGGTGGAGGTAGTGGCCTAACAGAAGGAAGACCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266354" ref_strand="+" ref_description="SGN-E266354 [cLEI-3-K1]">
      <seq>tcatggtcaatcgtcccccaatgcctccatcaatggctatgagtgcgcatacccgtactattgcaccaccttctggatcacagtttacacctatgggagcacctcggccctttgttccccacccgatgtcccagccgggaatgtctatggtcccgcctcctcctatgccccaaggaatgccaccacctcctccaccagaagaagctcctcctctccctgaagagccagagccgaagaggcaaaagcttgacgagtctgttctcattcctgaagaccagtttttggctcagcattcgggacctgcaaggatcaatgtatctgtgccgaatactgatgaagggaatctcaaaggacaagttctggaaatcactgtgcaatctctgaccgaaaccattgcaagtctgaaagagaagatttctggggagatccagcttcctgcgaacaaacaaaagctgagtggaaaggctggttttctcaaggacaacttgtctcttgcatactataatgttgcttctggagaaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="40676" stop="41897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40976" g_stop="41271" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41272" i_stop="41367" i_length="96">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41368" g_stop="41597" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="526" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E266354" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40976" e_stop="41271"/>
          <exon e_start="41368" e_stop="41597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGTCAATCGTCCCCCAATGCCTCCATCAATGGCTATGAGTTCGCATACCCTTACTATTCCACCACCTCCTGGATCACAGTTTACACCTATGGGAGCACCTCGGCCCTTTGTTCCCCACCCGATGTCCCAGCCGGGAATGTCTATGGTCCCGCCTCCTCCTATGCCCCAAGGAATGCCACCACCTCCTCCACCAGAAGAAGCTCCTCCTCTCCCTGAAGAGCCAGAGCCGAAGAGGCAAAAGCTTGACGAGTCTGTTCTCATTCCTGAAGACCAGTTTTTGGCTCAGCATTCGGTGAGGATAGCTTTAAAAGAACACTTTTACATAATTGTCTGTTTCATGTTCTCTTACATCCATGGAAATTTTATTTCCTGCTGGGTTATATTGCAGGGACCTGCAAGGATCAATGTATCTGTGCCGAATACTGATGAAGGGAATCTCAAAGGACAAGTTCTGGAAATCACTGTGCAATCTCTGACCGAAACCATTGCAAGTCTGAAAGAGAAGATTTCTGGGGAGATCCAGCTTCCTGCGAACAAACAAAAGCTGAGTGGAAAGGCTGGTTTTCTCAAGGACAACTTGTCTCTTGCATACTATAATGTTGCTTCTGGAGAAACACT</genome_strand>
        <mrna_strand>TCATGGTCAATCGTCCCCCAATGCCTCCATCAATGGCTATGAGTGCGCATACCCGTACTATTGCACCACCTTCTGGATCACAGTTTACACCTATGGGAGCACCTCGGCCCTTTGTTCCCCACCCGATGTCCCAGCCGGGAATGTCTATGGTCCCGCCTCCTCCTATGCCCCAAGGAATGCCACCACCTCCTCCACCAGAAGAAGCTCCTCCTCTCCCTGAAGAGCCAGAGCCGAAGAGGCAAAAGCTTGACGAGTCTGTTCTCATTCCTGAAGACCAGTTTTTGGCTCAGCATTCG................................................................................................GGACCTGCAAGGATCAATGTATCTGTGCCGAATACTGATGAAGGGAATCTCAAAGGACAAGTTCTGGAAATCACTGTGCAATCTCTGACCGAAACCATTGCAAGTCTGAAAGAGAAGATTTCTGGGGAGATCCAGCTTCCTGCGAACAAACAAAAGCTGAGTGGAAAGGCTGGTTTTCTCAAGGACAACTTGTCTCTTGCATACTATAATGTTGCTTCTGGAGAAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553354" ref_strand="+" ref_description="SGN-E553354 [cTSB-5-D15]">
      <seq>gtctatggtcccgcctcctcctatgccccaaggaatgccaccacctcctccaccagaagaagctcctcctctccctgaagagccagagccgaagaggcaaaagcttgacgagtctgttctcattcctgaagaccagtttttggctcagcattcgggacctgcaaggatcaatgtatctgtgccgaatactgatgaagggaatctcaaaggacaagttctggaaatcactgtgcaatctctgaccgaaaccattgcaagtctgaaagagaagatttctggggagatccagcttcctgcgaacaaacaaaagctgagtggaaaggctggttttctcaaggacaacttgtctcttgcatactataatgttgcttctggagaaacactcggcctctctctgagagaacgtggtgggagaaagagatgaatgaggatttatttgacatggctttccaagattttggcatgttggcgatcatcgatgatgacaacaggaagcttactagttctattcctttaagatgcaatgactgtaggttatgttttactaatttgtgtgtcttaacatgtgcagttgctccaccctctaactagagcccagttgttattttgttgtatcttttgagtccaaggccattttgggattagaacttttctgatgtcaaacattccttacaattttagaggctttccttggcaaannanananaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="40818" stop="42376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41118" g_stop="41271" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41272" i_stop="41367" i_length="96">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41368" g_stop="41667" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="454" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41668" i_stop="41833" i_length="166">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41834" g_stop="42075" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="696" r_length="242" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="705" polyA_stop="721"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E553354" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41118" e_stop="41271"/>
          <exon e_start="41368" e_stop="41667"/>
          <exon e_start="41834" e_stop="42075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTATGGTCCCGCCTCCTCCTATGCCCCAAGGAATGCCACCACCTCCTCCACCAGAAGAAGCTCCTCCTCTCCCTGAAGAGCCAGAGCCGAAGAGGCAAAAGCTTGACGAGTCTGTTCTCATTCCTGAAGACCAGTTTTTGGCTCAGCATTCGGTGAGGATAGCTTTAAAAGAACACTTTTACATAATTGTCTGTTTCATGTTCTCTTACATCCATGGAAATTTTATTTCCTGCTGGGTTATATTGCAGGGACCTGCAAGGATCAATGTATCTGTGCCGAATACTGATGAAGGGAATCTCAAAGGACAAGTTCTGGAAATCACTGTGCAATCTCTGACCGAAACCATTGCAAGTCTGAAAGAGAAGATTTCTGGGGAGATCCAGCTTCCTGCGAACAAACAAAAGCTGAGTGGAAAGGCTGGTTTTCTCAAGGACAACTTGTCTCTTGCATACTATAATGTTGCTTCTGGAGAAACACTCGGCCTCTCTCTGAGAGAACGTGGTGGGAGAAAGAGATGAATGAGGATTTATTTGACATGGCTTTCCAAGGTTTATTTTGCAACTATTTGGCATACTAATCCTTGTTATGAATTTAAAGAACTCTCCTTTCTTCTTTCATGTTATTTTGGAGATTATACTGGTCTTGTACTTCTAGATTTTCTTTCTGCAATTTAATCAATTTTATCTTTCTGATGGTTGTGGGTATCTACTACAGATTTTGGCATGTTGGCGATCATCGATGATGACAACAGGAAGCTTACTAGTTCTATTCCTTTAAGATGCAATGACTGTAGGTTATGTTCTACTAATTTGTGTGTCTTAACATGTGCAGTTGCTCCACCCTCTAACTAGAGCCCAGTTGTTATTTTGTTGTATCTTTTGAGTCCAAGGCCATTTTGGGATTAGAACTTTTCTGATGTCAAACATTCCTTACAATTTTAGAGGCTTTCCTTGGCA</genome_strand>
        <mrna_strand>GTCTATGGTCCCGCCTCCTCCTATGCCCCAAGGAATGCCACCACCTCCTCCACCAGAAGAAGCTCCTCCTCTCCCTGAAGAGCCAGAGCCGAAGAGGCAAAAGCTTGACGAGTCTGTTCTCATTCCTGAAGACCAGTTTTTGGCTCAGCATTCG................................................................................................GGACCTGCAAGGATCAATGTATCTGTGCCGAATACTGATGAAGGGAATCTCAAAGGACAAGTTCTGGAAATCACTGTGCAATCTCTGACCGAAACCATTGCAAGTCTGAAAGAGAAGATTTCTGGGGAGATCCAGCTTCCTGCGAACAAACAAAAGCTGAGTGGAAAGGCTGGTTTTCTCAAGGACAACTTGTCTCTTGCATACTATAATGTTGCTTCTGGAGAAACACTCGGCCTCTCTCTGAGAGAACGTGGTGGGAGAAAGAGATGAATGAGGATTTATTTGACATGGCTTTCCAAG......................................................................................................................................................................ATTTTGGCATGTTGGCGATCATCGATGATGACAACAGGAAGCTTACTAGTTCTATTCCTTTAAGATGCAATGACTGTAGGTTATGTTTTACTAATTTGTGTGTCTTAACATGTGCAGTTGCTCCACCCTCTAACTAGAGCCCAGTTGTTATTTTGTTGTATCTTTTGAGTCCAAGGCCATTTTGGGATTAGAACTTTTCTGATGTCAAACATTCCTTACAATTTTAGAGGCTTTCCTTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379486" ref_strand="+" ref_description="SGN-E379486 [TUS-1-L21]">
      <seq>tttaaagaactctcctttcttctttcatgttattttggagattatactggtcttgtacttctagattttctttctgcaatttaatcaattttatctttctgatggttgtgggtatctactacagattttggcatgttggcgatcatcgatgatgacaacaggaagcttactagttctattcctttaagatgcaatgactgtaggttatgttttactaatttgtgtgtcttaacatgtgcagttgctccaccctctaactagagcccagttgttattttgttgtatcttttgagtccaaggccattttgggattagaacttttctgatgtcaaacattccttacaattttagaggctttccttggcaattaatatttcaaactcttctgtggatttaggacctatttctgtagaagatgtgtgtgtcgtgtttggcgatgcttgtcccaagcacacctgcctcatatgtggtgcgtttttggggcacttgagcccctttgtgcaagtcctatgtagcttcattcttttcatttgcttttgtgtagtctgctatctggagaaagtggctaaggtttctctgatgcctttattttatcaacacagctttacccctgttagaggctgtgatggttgtattatgaggttctatcttggtagcaaaagcagtttgtccgtgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="41410" stop="42681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41710" g_stop="42374" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42375" i_stop="42469" i_length="95">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42470" g_stop="42484" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="680" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E379486" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41710" e_stop="42374"/>
          <exon e_start="42470" e_stop="42484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAGAACTCTCCTTTCTTCTTTCATGTTATTTTGGAGATTATACTGGTCTTGTACTTCTAGATTTTCTTTCTGCAATTTAATCAATTTTATCTTTCTGATGGTTGTGGGTATCTACTACAGATTTTGGCATGTTGGCGATCATCGATGATGACAACAGGAAGCTTACTAGTTCTATTCCTTTAAGATGCAATGACTGTAGGTTATGTTCTACTAATTTGTGTGTCTTAACATGTGCAGTTGCTCCACCCTCTAACTAGAGCCCAGTTGTTATTTTGTTGTATCTTTTGAGTCCAAGGCCATTTTGGGATTAGAACTTTTCTGATGTCAAACATTCCTTACAATTTTAGAGGCTTTCCTTGGCAATTAATATTTCAAACTCTTCTGTGGATTTAGGACCTATTTCTGTAGAAGATGTGTGTGTCGTGTTTGGCGATGCTTGTCCCAAGCACACCTGCCTCATATGTGGTGCGTTTTTGGGGCACTTGAGCCCCTTTGTGCAAGTCCTATGTAGCTTCATTCTTTTCATTTGCTTTTGTGTAGTCTGCTATCTGGAGAAAGTGGCTAAGGTTTCTCTGATGCCTTTATTTTATCAACACAGCTTTACCCCTGTTAGAGGCTGTGATGGTTGTATTATGAGGTTCTATCTTGGTAGCAAAAGCAGGTATTGTTTTTGCTCTTTTTATTGGTGTGTACGGTTTATTTTTTGATGAGAAGCTGTTGGCAGACATCAAAGATTCTACACTTGCCCTTTTGCAGTTTGTCCGTGCTTTT</genome_strand>
        <mrna_strand>TTTAAAGAACTCTCCTTTCTTCTTTCATGTTATTTTGGAGATTATACTGGTCTTGTACTTCTAGATTTTCTTTCTGCAATTTAATCAATTTTATCTTTCTGATGGTTGTGGGTATCTACTACAGATTTTGGCATGTTGGCGATCATCGATGATGACAACAGGAAGCTTACTAGTTCTATTCCTTTAAGATGCAATGACTGTAGGTTATGTTTTACTAATTTGTGTGTCTTAACATGTGCAGTTGCTCCACCCTCTAACTAGAGCCCAGTTGTTATTTTGTTGTATCTTTTGAGTCCAAGGCCATTTTGGGATTAGAACTTTTCTGATGTCAAACATTCCTTACAATTTTAGAGGCTTTCCTTGGCAATTAATATTTCAAACTCTTCTGTGGATTTAGGACCTATTTCTGTAGAAGATGTGTGTGTCGTGTTTGGCGATGCTTGTCCCAAGCACACCTGCCTCATATGTGGTGCGTTTTTGGGGCACTTGAGCCCCTTTGTGCAAGTCCTATGTAGCTTCATTCTTTTCATTTGCTTTTGTGTAGTCTGCTATCTGGAGAAAGTGGCTAAGGTTTCTCTGATGCCTTTATTTTATCAACACAGCTTTACCCCTGTTAGAGGCTGTGATGGTTGTATTATGAGGTTCTATCTTGGTAGCAAAAGCAG...............................................................................................TTTGTCCGTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374547" ref_strand="+" ref_description="SGN-E374547 [TUS-15-B7]">
      <seq>tttaaagaactctcctttcttctttcatgttattttggagattatactggtcttgtacttctagattttctttctgcaatttaatcaattttatctttctgatggttgtgggtatctactacagattttggcatgttggcgatcatcgatgatgacaacaggaagcttactagttctattcctttaagatgcaatgactgtaggttatgttttactaatttgtgtgtcttaacatgtgcagttgctccaccctctaactagagcccagttgttattttgttgtatcttttgagtccaaggccattttgggattagaacttttctgatgtcaaacattccttacaattttagaggctttccttggcaattaatatttcaaactcttctgtggatttaggacctatttctgtagaagatgtgtgtgtcgtgtttggcgatgcttgtcccaagcacacctgcctcatatgtggtgcgtttttggggcacttgagcccctttgtgcaagtcctatgtagccttcattcttttcatttgcttttgtgtagtctgctatctggagaaagtggctaaggtttctctgatgcctttattttatcaacacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="41410" stop="42612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41710" g_stop="42312" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E374547" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41710" e_stop="42312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAGAACTCTCCTTTCTTCTTTCATGTTATTTTGGAGATTATACTGGTCTTGTACTTCTAGATTTTCTTTCTGCAATTTAATCAATTTTATCTTTCTGATGGTTGTGGGTATCTACTACAGATTTTGGCATGTTGGCGATCATCGATGATGACAACAGGAAGCTTACTAGTTCTATTCCTTTAAGATGCAATGACTGTAGGTTATGTTCTACTAATTTGTGTGTCTTAACATGTGCAGTTGCTCCACCCTCTAACTAGAGCCCAGTTGTTATTTTGTTGTATCTTTTGAGTCCAAGGCCATTTTGGGATTAGAACTTTTCTGATGTCAAACATTCCTTACAATTTTAGAGGCTTTCCTTGGCAATTAATATTTCAAACTCTTCTGTGGATTTAGGACCTATTTCTGTAGAAGATGTGTGTGTCGTGTTTGGCGATGCTTGTCCCAAGCACACCTGCCTCATATGTGGTGCGTTTTTGGGGCACTTGAGCCCCTTTGTGCAAGTCCTATGTAG-CTTCATTCTTTTCATTTGCTTTTGTGTAGTCTGCTATCTGGAGAAAGTGGCTAAGGTTTCTCTGATGCCTTTATTTTATCAACACAGC</genome_strand>
        <mrna_strand>TTTAAAGAACTCTCCTTTCTTCTTTCATGTTATTTTGGAGATTATACTGGTCTTGTACTTCTAGATTTTCTTTCTGCAATTTAATCAATTTTATCTTTCTGATGGTTGTGGGTATCTACTACAGATTTTGGCATGTTGGCGATCATCGATGATGACAACAGGAAGCTTACTAGTTCTATTCCTTTAAGATGCAATGACTGTAGGTTATGTTTTACTAATTTGTGTGTCTTAACATGTGCAGTTGCTCCACCCTCTAACTAGAGCCCAGTTGTTATTTTGTTGTATCTTTTGAGTCCAAGGCCATTTTGGGATTAGAACTTTTCTGATGTCAAACATTCCTTACAATTTTAGAGGCTTTCCTTGGCAATTAATATTTCAAACTCTTCTGTGGATTTAGGACCTATTTCTGTAGAAGATGTGTGTGTCGTGTTTGGCGATGCTTGTCCCAAGCACACCTGCCTCATATGTGGTGCGTTTTTGGGGCACTTGAGCCCCTTTGTGCAAGTCCTATGTAGCCTTCATTCTTTTCATTTGCTTTTGTGTAGTCTGCTATCTGGAGAAAGTGGCTAAGGTTTCTCTGATGCCTTTATTTTATCAACACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201823" ref_strand="+" ref_description="SGN-E201823 [cLEC-11-H10]">
      <seq>tttaaagaactctcctttcttctttcatgttattttggagattatactggtcttgtacttctagattttctttctgcaatttaatcaattttatctttctgatggttgtgggtatctactacagattttggcatgttggcgatcatcgatgatgacaacaggaagcttactagttctattcctttaagatgcaatgactgtaggttatgttttactaatttgtgtgtcttaacatgtgcagttgctccaccctctaactagagcccagttgttattttgttgtatcttttgagtccaaggccattttgggattagaacttttctgatgtcaaacattccttacaattttagaggctttccttggcaattaatatttcaaactcttctgtggatttaggacctatttctgtagaaaatgtgtgtgtcgtgtttggcgatgcttgtcccaagcacacctgcctcatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="41410" stop="42476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41710" g_stop="42176" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E201823" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41710" e_stop="42176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAGAACTCTCCTTTCTTCTTTCATGTTATTTTGGAGATTATACTGGTCTTGTACTTCTAGATTTTCTTTCTGCAATTTAATCAATTTTATCTTTCTGATGGTTGTGGGTATCTACTACAGATTTTGGCATGTTGGCGATCATCGATGATGACAACAGGAAGCTTACTAGTTCTATTCCTTTAAGATGCAATGACTGTAGGTTATGTTCTACTAATTTGTGTGTCTTAACATGTGCAGTTGCTCCACCCTCTAACTAGAGCCCAGTTGTTATTTTGTTGTATCTTTTGAGTCCAAGGCCATTTTGGGATTAGAACTTTTCTGATGTCAAACATTCCTTACAATTTTAGAGGCTTTCCTTGGCAATTAATATTTCAAACTCTTCTGTGGATTTAGGACCTATTTCTGTAGAAGATGTGTGTGTCGTGTTTGGCGATGCTTGTCCCAAGCACACCTGCCTCATATG</genome_strand>
        <mrna_strand>TTTAAAGAACTCTCCTTTCTTCTTTCATGTTATTTTGGAGATTATACTGGTCTTGTACTTCTAGATTTTCTTTCTGCAATTTAATCAATTTTATCTTTCTGATGGTTGTGGGTATCTACTACAGATTTTGGCATGTTGGCGATCATCGATGATGACAACAGGAAGCTTACTAGTTCTATTCCTTTAAGATGCAATGACTGTAGGTTATGTTTTACTAATTTGTGTGTCTTAACATGTGCAGTTGCTCCACCCTCTAACTAGAGCCCAGTTGTTATTTTGTTGTATCTTTTGAGTCCAAGGCCATTTTGGGATTAGAACTTTTCTGATGTCAAACATTCCTTACAATTTTAGAGGCTTTCCTTGGCAATTAATATTTCAAACTCTTCTGTGGATTTAGGACCTATTTCTGTAGAAAATGTGTGTGTCGTGTTTGGCGATGCTTGTCCCAAGCACACCTGCCTCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E380035" ref_strand="+" ref_description="SGN-E380035 [TUS-1-L21](-)">
      <seq>agagcccagttgttattttgttgtatctttgagtcccaaggccattttgggattagaacttttctgatgtcaaacattccttacaattttagaggctttccttggcaattaatatttcaaactcttctgtggatttaggacctatttctgtagaagatgtgtgtgtcgtgtttggcgatgcttgtcccaagcacacctgcctcatatgtggtgcgtttttggggcacttgagcccctttgtgcaagtcctatgtagcttcattcttttcatttgcttttgtgtagtctgctatctggagaaagtggctaaggtttctctgatgcctttattttatcaacacagctttacccctgttagaggctgtgatggttgtattatgaggttctatcttggtagcaaaagcagtttgtccgtgcttttggaggaggttgcagattgatgattgataaatgattcatatgtgatctttgggaatgccagataatgtgccgccagtagtttttatttgttaatgggagttggtttgttagcttatatatgctttgtgtgtttgtcctgtttgtatcttgatccaccccatttttatggggtccaattatcttaactgcactttcaactgatgatgacagaactagtgacatttcacagctaggaatgtgatcgacatactttttaagaaactgctttctatgggatcatgttctggccatgtatttctatcttagcagctttcccttaataagcagaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="41669" stop="43114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41969" g_stop="42374" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42375" i_stop="42469" i_length="95">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42470" g_stop="42814" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="751" r_length="345" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E380035" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41969" e_stop="42374"/>
          <exon e_start="42470" e_stop="42814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCCCAGTTGTTATTTTGTTGTATCTTTTGAGT-CCAAGGCCATTTTGGGATTAGAACTTTTCTGATGTCAAACATTCCTTACAATTTTAGAGGCTTTCCTTGGCAATTAATATTTCAAACTCTTCTGTGGATTTAGGACCTATTTCTGTAGAAGATGTGTGTGTCGTGTTTGGCGATGCTTGTCCCAAGCACACCTGCCTCATATGTGGTGCGTTTTTGGGGCACTTGAGCCCCTTTGTGCAAGTCCTATGTAGCTTCATTCTTTTCATTTGCTTTTGTGTAGTCTGCTATCTGGAGAAAGTGGCTAAGGTTTCTCTGATGCCTTTATTTTATCAACACAGCTTTACCCCTGTTAGAGGCTGTGATGGTTGTATTATGAGGTTCTATCTTGGTAGCAAAAGCAGGTATTGTTTTTGCTCTTTTTATTGGTGTGTACGGTTTATTTTTTGATGAGAAGCTGTTGGCAGACATCAAAGATTCTACACTTGCCCTTTTGCAGTTTGTCCGTGCTTTTGGAGGAGGTTGCAGATTGATGATTGATAAATGATTCATATGTGATCTTTGGGAATGCCAGATAATGTGCCGCCAGTAGTTTTTATTTGTTAATGGGAGTTGGTTTGTTAGCTTATATATGCTTTGTGTGTTTGTCCTGTTTGTATCTTGATCCACCCCATTTTTATGGGGTCCAATTATCTTAACTGCACTTTCAACTGATGATGACAGAACTAGTGACATTTCACAGCTAGGAATGTGATCGACATACTTTTTAAGAAACTGCTTTCTATGGGATCATGTTCTGGCCATGTATTTCTATCTTTGCAGCTTTCCCTTAATAAGCAGAAGT</genome_strand>
        <mrna_strand>AGAGCCCAGTTGTTATTTTGTTGTATC-TTTGAGTCCCAAGGCCATTTTGGGATTAGAACTTTTCTGATGTCAAACATTCCTTACAATTTTAGAGGCTTTCCTTGGCAATTAATATTTCAAACTCTTCTGTGGATTTAGGACCTATTTCTGTAGAAGATGTGTGTGTCGTGTTTGGCGATGCTTGTCCCAAGCACACCTGCCTCATATGTGGTGCGTTTTTGGGGCACTTGAGCCCCTTTGTGCAAGTCCTATGTAGCTTCATTCTTTTCATTTGCTTTTGTGTAGTCTGCTATCTGGAGAAAGTGGCTAAGGTTTCTCTGATGCCTTTATTTTATCAACACAGCTTTACCCCTGTTAGAGGCTGTGATGGTTGTATTATGAGGTTCTATCTTGGTAGCAAAAGCAG...............................................................................................TTTGTCCGTGCTTTTGGAGGAGGTTGCAGATTGATGATTGATAAATGATTCATATGTGATCTTTGGGAATGCCAGATAATGTGCCGCCAGTAGTTTTTATTTGTTAATGGGAGTTGGTTTGTTAGCTTATATATGCTTTGTGTGTTTGTCCTGTTTGTATCTTGATCCACCCCATTTTTATGGGGTCCAATTATCTTAACTGCACTTTCAACTGATGATGACAGAACTAGTGACATTTCACAGCTAGGAATGTGATCGACATACTTTTTAAGAAACTGCTTTCTATGGGATCATGTTCTGGCCATGTATTTCTATCTTAGCAGCTTTCCCTTAATAAGCAGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746473" ref_strand="+" ref_description="SGN-E746473 [GI|47104981]">
      <seq>gacacaaaaactccaaaaagtctcctctgttcacagagtcttctcttgacactttcttgatttttggccccttatgtaatccatctgtttctttctcctctttacacctcttacaaactttttgaaaccccaaacattacaaattgtaccaatactaaatatgcttgtacctttacactctcctgcaaacatggctgctctgttttttcgacttctgtttttttccttgatagtatcgaatgttgtgctagttcaggcaaggtttatagttgagaagaacagtataagtgttctgtctccttattcaatgcactcgaagcatgatgcctctattggtaattttggtgtccctgattatggtggttctttagttggaactgttgtttatcctagtaaaggtgctaatggctgcgctgaatttgatggtgataaacccttcaaatctaagggtcatcgtcctaatatccttcttcttgatcgtggagactgctattttgctttgaaggtatggaatgggcaacaagctggagcagctgcagtactagttgctgatagtatagatgaggctcttataactatggattctcctgaagaaagtacggatgccaatggatacatcgagaagattggtatcccgtcagcattgattgaaaagtcgtttggtgacgcattgaaagaagctcttaagaagggagaggaagttgtgatcaaaatggattggacggagtcaatgcctcatcctgatcagcgagttgagtatgaattgtggactaatagcaacgatgagtgtggggttcgttgtgatgagcagatgaatttcatcaagaacttcaaaggacatgctcaaatacttgagaagggcggttatactatgttcacgcctcattatattacttggtactgtcctgaagctttcattcttagcagccagtgcaaatctcagtgcattaatcacgggagatattgcgctcctgatccggagcaggactttggggaggggtaccaagggaaggatgttgtctttgagaacttgaggcagctttgcgtgcatagagttgcaaatgagagtagccgttcttgggtttggtgggactatgtgacggattttcatattagatgttcaatgaagcaaaagcgatacagcaaagaatgtgctgaggaggtcatgaaatcacttgatctaccggttgacaagataaagaaatgcatgggcgatccagaggctaatgttgaaaatgatgtgttgaagactgagcaagacctccaggttggccgaggacctcgtggagatgtgacaatcttaccaacaatggtcatcaatgatattcaatatcgagggaaattggagaggactgctgttttaaaagccatatgtgctggttttaaggaaacaactgaaccttcgatatgtttaagtggagatcttgaaacaaaccagtgcctagaaaggaacggtggctgttggcgggatcctaaatctaacataactgcctgcaaggatacatatagaggaagagtttgtgagtgccctttggtgaacggcgttcagtataaaggagatggatacacatcttgtgaagccgttggacctggaaggtgttcggtaaacaacggaggatgctggtcagaaaccagaaatgggcaaacatattcagcatgttcagagggtgaactatcaggctgtaagtgtccgtatggttttaaaggggatggccataaatgtgaagatgtagatgaatgcaaggaaggacttgtttgtcagtgtgatggctgcagctgtaaggacacatggggtggattcgagtgtaagtgcaaaggaaatcaactctacataatggagcatgatacttgtatagaaagacactcatcaaagatcggacgggtccttatgttctctttcctagccattgcagtgggggctggtttagctggttacaccttttacaagtatagacttcggtcatacatggactcagagattatggccatcatgtcgcagtacatgcctctcgacaaccacaatcagaatcaggttgtccatcatgaagctgaacctctacaacagagctcggtatgatgagtatttctgggagctaatgtatgatttcccatccttctcttggatacttttcgacttatggatattgaaggagatgaagaacagagtcatatttagaggaaaaccagatacttgatgctggtttgccaactctctagtccataaagacctggcttttcccatttgtgtataatagagttttgagatgtaaatgcagggttcacttgtgttaaaaggacatatagaacaaaatatacttgggaaggcaacccatggccttttacattattcagcaattgcatccttcttaaatcaaaaaagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="47794" stop="43059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47495" g_stop="47011" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47010" i_stop="46468" i_length="543">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46467" g_stop="45775" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="1178" r_length="693" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45774" i_stop="45681" i_length="94">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45680" g_stop="45592" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1179" r_stop="1267" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45591" i_stop="45450" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45449" g_stop="45380" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1268" r_stop="1337" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45379" i_stop="45230" i_length="150">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45229" g_stop="45146" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1338" r_stop="1421" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45145" i_stop="45046" i_length="100">
            <donor d_prob="0.515" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45045" g_stop="44969" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1422" r_stop="1498" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44968" i_stop="44852" i_length="117">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44851" g_stop="44770" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1499" r_stop="1580" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44769" i_stop="44633" i_length="137">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44632" g_stop="44550" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1581" r_stop="1663" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="44549" i_stop="44464" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="44463" g_stop="44400" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1664" r_stop="1727" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="44399" i_stop="44301" i_length="99">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="44300" g_stop="44172" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1728" r_stop="1856" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="44171" i_stop="43965" i_length="207">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="43964" g_stop="43861" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1857" r_stop="1960" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="43860" i_stop="43774" i_length="87">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="43773" g_stop="43360" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1961" r_stop="2374" r_length="414" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2375" polyA_stop="2395"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E746473" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2374</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47495" e_stop="47011"/>
          <exon e_start="46467" e_stop="45775"/>
          <exon e_start="45680" e_stop="45592"/>
          <exon e_start="45449" e_stop="45380"/>
          <exon e_start="45229" e_stop="45146"/>
          <exon e_start="45045" e_stop="44969"/>
          <exon e_start="44851" e_stop="44770"/>
          <exon e_start="44632" e_stop="44550"/>
          <exon e_start="44463" e_stop="44400"/>
          <exon e_start="44300" e_stop="44172"/>
          <exon e_start="43964" e_stop="43861"/>
          <exon e_start="43773" e_stop="43360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACAAAAACTCCAAAAAGTCTCCTCTGTTCACAGAGTCTTCTCTTGACACTTTCTTGATTTTTGGCCCCTTATGTAATCCATCTGTTTCTTTCTCCTCTTTACACCTCTTACAAACTTTTTGAAACCCCAAACATTACAAATTGTACCAATACTAAATATGCTTGTACCTTTACACTCTCCTGCAAACATGGCTGCTCTGTTTTTTCGACTTCTGTTTTTTTCCTTGATAGTATCGAATGTTGTGCTAGTTCAGGCAAGGTTTATAGTTGAGAAGAACAGTATAAGTGTTCTGTCTCCTTATTCAATGCACTCGAAGCATGATGCCTCTATTGGTAATTTTGGTGTCCCTGATTATGGTGGTTCTTTAGTTGGAACTGTTGTTTATCCTAGTAAAGGTGCTAATGGCTGCGCTGAATTTGATGGTGATAAACCCTTCAAATCTAAGGGTCATCGTCCTAATATCCTTCTTCTTGATCGTGGAGGTAATTTTTATTTTAATTTCGAAAAATTAAAAGATCAAATTTTTGGTTGATTTGAAGTTTTTGATTTTTGATTTGATGTAATGTTGTCTCTGTATCTAATCACTCTGCTAGAGGTTTCTTCATTTCCCATAGCTCGAGAAACGGAATAATTTAAAGTTTATGAGTTTGTGATATTAATAACAAGTATTAGTAATTAATTTTTTCTTGATTACATATATAGAGTTTAAATTCTAAATCTTAGAGGTTATTGCTGATGTTTGAGTATCTATTGGATTAAAAAGGAGCTAAATTCTATTTCTAATTAAGTTGGAGAAACTTACACTTCTTTTAGGTTTTGCTTCTAAGTGAAGTGTTAGAGACTTATGAGTTATTTTACTGTTTCTTGGAGTTGAAGGGAGTTTCGGAATCTATTTCTTTAGTTGAGTAGCCACTATCAACTATACGGATATTCGTTTTTCTATGCAGAATTTTACTGGAATGTTTGACGTATTAGATGAAGTTATAAGTTTATGATAAATATGTAAAACAATTTTTTTTTTCCAGACTGCTATTTTGCTTTGAAGGTATGGAATGGGCAACAAGCTGGAGCAGCTGCAGTACTAGTTGCTGATAGTATAGATGAGGCTCTTATAACTATGGATTCTCCTGAAGAAAGTACGGATGCCAATGGATACATCGAGAAGATTGGTATCCCGTCAGCATTGATTGAAAAGTCGTTTGGTGACGCATTGAAAGAAGCTCTTAAGAAGGGAGAGGAAGTTGTGATCAAAATGGATTGGACGGAGTCAATGCCTCATCCTGATCAGCGAGTTGAGTATGAATTGTGGACTAATAGCAACGATGAGTGTGGGGTTCGTTGTGATGAGCAGATGAATTTCATCAAGAACTTCAAAGGACATGCTCAAATACTTGAGAAGGGCGGTTATACTATGTTCACGCCTCATTATATTACTTGGTACTGTCCTGAAGCTTTCATTCTTAGCAGCCAGTGCAAATCTCAGTGCATTAATCACGGGAGATATTGCGCTCCTGATCCGGAGCAGGACTTTGGGGAGGGGTACCAAGGGAAGGATGTTGTCTTTGAGAACTTGAGGCAGCTTTGCGTGCATAGAGTTGCAAATGAGAGTAGCCGTTCTTGGGTTTGGTGGGACTATGTGACGGATTTTCATATTAGATGTTCAATGAAGCAAAAGCGATACAGCAAAGAATGTGCTGAGGAGGTCATGAAATCACTTGGTATCTCCCTTTCGAGTTCTATTTTTTTTGGTCATTATTGATAATATATACTGTTCTCAGTAGTTACTCTTTGAGTTTTTATTTGTTTCATCAGATCTACCGGTTGACAAGATAAAGAAATGCATGGGCGATCCAGAGGCTAATGTTGAAAATGATGTGTTGAAGACTGAGCAAGACCTCCAGGTATCTTCATTTCTGAAAATCTCTAATCATTTCATAATTTGTGACATAATTGACCATTTTGTGATTTTACAGATATAAATATCTATGTTATCATGAATATATTACATATAAACATAACTTCTTCTTTTGTTTCCCTTAAAAGGTTGGCCGAGGACCTCGTGGAGATGTGACAATCTTACCAACAATGGTCATCAATGATATTCAATATCGAGGTATGATGTAGACGTAGAAAAATAAGTTCAACATAAACTAACTAATTGCTTATATTTGTAGCTTTCTTATTGATAAATCTTCAGGGGGATATAATATTCTCCTCGGATCACTCTTTGAGTACTCAAGTTCTTTTTTACTGTTTCTTTAAGGGAAATTGGAGAGGACTGCTGTTTTAAAAGCCATATGTGCTGGTTTTAAGGAAACAACTGAACCTTCGATATGTTTAAGTGGAGGTTTGACACCATTCCTTTCTTCAGGATCTTGACTACCAGAGTTATTGCATAAAATTGAAAGAGTTAGCTAATTGTTGCTTATATGCTCAATGAACAATAGATCTTGAAACAAACCAGTGCCTAGAAAGGAACGGTGGCTGTTGGCGGGATCCTAAATCTAACATAACTGCCTGCAAGGTATGGACAATAATGCTCTTTGAAACCTCTATGAAGTTATCATCTTCCTTCGTGGAAAACTATTGTGGTATATATAACAACCTTTTACATGAACCTCGTGCTTGTGTTGTTCTAAAGGATACATATAGAGGAAGAGTTTGTGAGTGCCCTTTGGTGAACGGCGTTCAGTATAAAGGAGATGGATACACATCTTGTGAAGGTAAGGAAGTGTTGCTTCTTGTTCTTTAGTTATACGTCCATTAATTGACAATTGGCCTATCGAATTGCTTGTCACTCTTGAGAATTGGATGACTTAAATATTTTTTCCCCTCTAACTGGCTTGCAATCGATTGACAGCCGTTGGACCTGGAAGGTGTTCGGTAAACAACGGAGGATGCTGGTCAGAAACCAGAAATGGGCAAACATATTCAGCATGTTCAGTTCAGTAAAACCAATACTTTCTTTAACTGTGTTTAGTCAAGATTAAACCATTGTATGTGCTAAAATCTGGTTTAACGCAAAGCAGGAGGGTGAACTATCAGGCTGTAAGTGTCCGTATGGTTTTAAAGGGGATGGCCATAAATGTGAAGGTATGTAACATTCTTGTAGATCCTTTCGTGACACTAAAATTTTCTCGTGTTTGTTAAGTGCTGATTCAAACGTCGTTCCTTTCAACAACAAAAAATCAGATGTAGATGAATGCAAGGAAGGACTTGTTTGTCAGTGTGATGGCTGCAGCTGTAAGGACACATGGGGTGGATTCGAGTGTAAGTGCAAAGGAAATCAACTCTACATAATGGAGCATGATACTTGTATAGGTAAGAAAAAGTTGATTCAGCACTAAAAACAAATGTTGTTTATCTTTTAATCTACCAGAGCTTCAACTTCTAAAGTTAACCATAAACTACTGCCTCCGATAAAAACTTGCATTTTGCTAAGATGCAAAGCATCGTTTTCACGATAATAATATATCATGACATAACAAGATGAACTTACAATATTACCTTTGTTTCTTAAATGTACAGAAAGACACTCATCAAAGATCGGACGGGTCCTTATGTTCTCTTTCCTAGCCATTGCAGTGGGGGCTGGTTTAGCTGGTTACACCTTTTACAAGTATAGACTTCGGGTAAGCATATCGAGTAGTTATTACAATCTTAAGAGTCATACTTACGCTACAACAACCATTATGCTAACTATTGGTAAATTTTTATAGTCATACATGGACTCAGAGATTATGGCCATCATGTCGCAGTACATGCCTCTCGACAACCACAATCAGAATCAGGTTGTCCATCATGAAGCTGAACCTCTACAACAGAGCTCGGTATGATGAGTATTTCTGGGAGCTAATGTATGATTTCCCATCCTTCTCTTGGATACTTTTCGACTTATGGATATTGAAGGAGATGAAGAACAGAGTCATATTTAGAGGAAAACCAGATACTTGATGCTGGTTTGCCAACTCTCTAGTCCATAAAGACCTGGCTTTTCCCATTTGTGTATAATAGAGTTTTGAGATGTAAATGCAGGGTTCACTTGTGTTAAAAGGACATATAGAACAAAATATACTTGCGAAGGCAACCCATGGCCTTTTACATTATTCAGCAATTGCATCCTTCTTAAATCA</genome_strand>
        <mrna_strand>GACACAAAAACTCCAAAAAGTCTCCTCTGTTCACAGAGTCTTCTCTTGACACTTTCTTGATTTTTGGCCCCTTATGTAATCCATCTGTTTCTTTCTCCTCTTTACACCTCTTACAAACTTTTTGAAACCCCAAACATTACAAATTGTACCAATACTAAATATGCTTGTACCTTTACACTCTCCTGCAAACATGGCTGCTCTGTTTTTTCGACTTCTGTTTTTTTCCTTGATAGTATCGAATGTTGTGCTAGTTCAGGCAAGGTTTATAGTTGAGAAGAACAGTATAAGTGTTCTGTCTCCTTATTCAATGCACTCGAAGCATGATGCCTCTATTGGTAATTTTGGTGTCCCTGATTATGGTGGTTCTTTAGTTGGAACTGTTGTTTATCCTAGTAAAGGTGCTAATGGCTGCGCTGAATTTGATGGTGATAAACCCTTCAAATCTAAGGGTCATCGTCCTAATATCCTTCTTCTTGATCGTGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTATTTTGCTTTGAAGGTATGGAATGGGCAACAAGCTGGAGCAGCTGCAGTACTAGTTGCTGATAGTATAGATGAGGCTCTTATAACTATGGATTCTCCTGAAGAAAGTACGGATGCCAATGGATACATCGAGAAGATTGGTATCCCGTCAGCATTGATTGAAAAGTCGTTTGGTGACGCATTGAAAGAAGCTCTTAAGAAGGGAGAGGAAGTTGTGATCAAAATGGATTGGACGGAGTCAATGCCTCATCCTGATCAGCGAGTTGAGTATGAATTGTGGACTAATAGCAACGATGAGTGTGGGGTTCGTTGTGATGAGCAGATGAATTTCATCAAGAACTTCAAAGGACATGCTCAAATACTTGAGAAGGGCGGTTATACTATGTTCACGCCTCATTATATTACTTGGTACTGTCCTGAAGCTTTCATTCTTAGCAGCCAGTGCAAATCTCAGTGCATTAATCACGGGAGATATTGCGCTCCTGATCCGGAGCAGGACTTTGGGGAGGGGTACCAAGGGAAGGATGTTGTCTTTGAGAACTTGAGGCAGCTTTGCGTGCATAGAGTTGCAAATGAGAGTAGCCGTTCTTGGGTTTGGTGGGACTATGTGACGGATTTTCATATTAGATGTTCAATGAAGCAAAAGCGATACAGCAAAGAATGTGCTGAGGAGGTCATGAAATCACTTG..............................................................................................ATCTACCGGTTGACAAGATAAAGAAATGCATGGGCGATCCAGAGGCTAATGTTGAAAATGATGTGTTGAAGACTGAGCAAGACCTCCAG..............................................................................................................................................GTTGGCCGAGGACCTCGTGGAGATGTGACAATCTTACCAACAATGGTCATCAATGATATTCAATATCGAG......................................................................................................................................................GGAAATTGGAGAGGACTGCTGTTTTAAAAGCCATATGTGCTGGTTTTAAGGAAACAACTGAACCTTCGATATGTTTAAGTGGAG....................................................................................................ATCTTGAAACAAACCAGTGCCTAGAAAGGAACGGTGGCTGTTGGCGGGATCCTAAATCTAACATAACTGCCTGCAAG.....................................................................................................................GATACATATAGAGGAAGAGTTTGTGAGTGCCCTTTGGTGAACGGCGTTCAGTATAAAGGAGATGGATACACATCTTGTGAAG.........................................................................................................................................CCGTTGGACCTGGAAGGTGTTCGGTAAACAACGGAGGATGCTGGTCAGAAACCAGAAATGGGCAAACATATTCAGCATGTTCA......................................................................................GAGGGTGAACTATCAGGCTGTAAGTGTCCGTATGGTTTTAAAGGGGATGGCCATAAATGTGAAG...................................................................................................ATGTAGATGAATGCAAGGAAGGACTTGTTTGTCAGTGTGATGGCTGCAGCTGTAAGGACACATGGGGTGGATTCGAGTGTAAGTGCAAAGGAAATCAACTCTACATAATGGAGCATGATACTTGTATAG...............................................................................................................................................................................................................AAAGACACTCATCAAAGATCGGACGGGTCCTTATGTTCTCTTTCCTAGCCATTGCAGTGGGGGCTGGTTTAGCTGGTTACACCTTTTACAAGTATAGACTTCGG.......................................................................................TCATACATGGACTCAGAGATTATGGCCATCATGTCGCAGTACATGCCTCTCGACAACCACAATCAGAATCAGGTTGTCCATCATGAAGCTGAACCTCTACAACAGAGCTCGGTATGATGAGTATTTCTGGGAGCTAATGTATGATTTCCCATCCTTCTCTTGGATACTTTTCGACTTATGGATATTGAAGGAGATGAAGAACAGAGTCATATTTAGAGGAAAACCAGATACTTGATGCTGGTTTGCCAACTCTCTAGTCCATAAAGACCTGGCTTTTCCCATTTGTGTATAATAGAGTTTTGAGATGTAAATGCAGGGTTCACTTGTGTTAAAAGGACATATAGAACAAAATATACTTGGGAAGGCAACCCATGGCCTTTTACATTATTCAGCAATTGCATCCTTCTTAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246740" ref_strand="+" ref_description="SGN-E246740 [cLEF-45-L23]">
      <seq>aagacctccaggttggccgaggacctcgtggagatgtgacaatcttaccaacaatggtcatcaatgatattcaatatcgagggaaattggagaggactgctgttttaaaagccatatgtgctggttttaaggaaacaactgaaccttcgatatgtttaagtggagatcttgaaacaaaccagtgcctagaaaggaacggtggctgttggcgggatcctaaatctaacataactgcctgcaaggatacatatagaggaagagtttgtgagtgccctttggtgaacggcgttcagtataaaggagatggatacacatcttgtgaagccgttggacctggaaggtgttcggtaaacaacggaggatgctggtcagaaaccagaaatgggcaaacatattcagcatgttcagagggtgaactatcaggctgtaagtgtccgtatggttttaaaggggatggccataaatgtgaagatgtagatgaatgcaaggaaggacttgtttgtcagtgtgatggctgcagctgtaaggacacatggggtggattcgagtgtaagtgcaaaggaaatcaactctacataatggagcatgatacttgtatagaaagacactcatcaaagatcggacgggtccttatgttctctttcctagccattgcagtgggggctggtttagctggttacaccttttacaagtatagacttcggtcatacatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="45751" stop="43557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45602" g_stop="45592" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45591" i_stop="45450" i_length="142">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45449" g_stop="45380" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="81" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45379" i_stop="45230" i_length="150">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45229" g_stop="45146" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="165" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45145" i_stop="45046" i_length="100">
            <donor d_prob="0.515" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45045" g_stop="44969" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="242" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44968" i_stop="44852" i_length="117">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44851" g_stop="44770" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="324" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44769" i_stop="44633" i_length="137">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44632" g_stop="44550" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="407" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44549" i_stop="44464" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44463" g_stop="44400" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="471" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44399" i_stop="44301" i_length="99">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44300" g_stop="44172" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="600" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="44171" i_stop="43965" i_length="207">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="43964" g_stop="43861" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="704" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="43860" i_stop="43774" i_length="87">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="43773" g_stop="43762" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="716" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E246740" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45602" e_stop="45592"/>
          <exon e_start="45449" e_stop="45380"/>
          <exon e_start="45229" e_stop="45146"/>
          <exon e_start="45045" e_stop="44969"/>
          <exon e_start="44851" e_stop="44770"/>
          <exon e_start="44632" e_stop="44550"/>
          <exon e_start="44463" e_stop="44400"/>
          <exon e_start="44300" e_stop="44172"/>
          <exon e_start="43964" e_stop="43861"/>
          <exon e_start="43773" e_stop="43762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACCTCCAGGTATCTTCATTTCTGAAAATCTCTAATCATTTCATAATTTGTGACATAATTGACCATTTTGTGATTTTACAGATATAAATATCTATGTTATCATGAATATATTACATATAAACATAACTTCTTCTTTTGTTTCCCTTAAAAGGTTGGCCGAGGACCTCGTGGAGATGTGACAATCTTACCAACAATGGTCATCAATGATATTCAATATCGAGGTATGATGTAGACGTAGAAAAATAAGTTCAACATAAACTAACTAATTGCTTATATTTGTAGCTTTCTTATTGATAAATCTTCAGGGGGATATAATATTCTCCTCGGATCACTCTTTGAGTACTCAAGTTCTTTTTTACTGTTTCTTTAAGGGAAATTGGAGAGGACTGCTGTTTTAAAAGCCATATGTGCTGGTTTTAAGGAAACAACTGAACCTTCGATATGTTTAAGTGGAGGTTTGACACCATTCCTTTCTTCAGGATCTTGACTACCAGAGTTATTGCATAAAATTGAAAGAGTTAGCTAATTGTTGCTTATATGCTCAATGAACAATAGATCTTGAAACAAACCAGTGCCTAGAAAGGAACGGTGGCTGTTGGCGGGATCCTAAATCTAACATAACTGCCTGCAAGGTATGGACAATAATGCTCTTTGAAACCTCTATGAAGTTATCATCTTCCTTCGTGGAAAACTATTGTGGTATATATAACAACCTTTTACATGAACCTCGTGCTTGTGTTGTTCTAAAGGATACATATAGAGGAAGAGTTTGTGAGTGCCCTTTGGTGAACGGCGTTCAGTATAAAGGAGATGGATACACATCTTGTGAAGGTAAGGAAGTGTTGCTTCTTGTTCTTTAGTTATACGTCCATTAATTGACAATTGGCCTATCGAATTGCTTGTCACTCTTGAGAATTGGATGACTTAAATATTTTTTCCCCTCTAACTGGCTTGCAATCGATTGACAGCCGTTGGACCTGGAAGGTGTTCGGTAAACAACGGAGGATGCTGGTCAGAAACCAGAAATGGGCAAACATATTCAGCATGTTCAGTTCAGTAAAACCAATACTTTCTTTAACTGTGTTTAGTCAAGATTAAACCATTGTATGTGCTAAAATCTGGTTTAACGCAAAGCAGGAGGGTGAACTATCAGGCTGTAAGTGTCCGTATGGTTTTAAAGGGGATGGCCATAAATGTGAAGGTATGTAACATTCTTGTAGATCCTTTCGTGACACTAAAATTTTCTCGTGTTTGTTAAGTGCTGATTCAAACGTCGTTCCTTTCAACAACAAAAAATCAGATGTAGATGAATGCAAGGAAGGACTTGTTTGTCAGTGTGATGGCTGCAGCTGTAAGGACACATGGGGTGGATTCGAGTGTAAGTGCAAAGGAAATCAACTCTACATAATGGAGCATGATACTTGTATAGGTAAGAAAAAGTTGATTCAGCACTAAAAACAAATGTTGTTTATCTTTTAATCTACCAGAGCTTCAACTTCTAAAGTTAACCATAAACTACTGCCTCCGATAAAAACTTGCATTTTGCTAAGATGCAAAGCATCGTTTTCACGATAATAATATATCATGACATAACAAGATGAACTTACAATATTACCTTTGTTTCTTAAATGTACAGAAAGACACTCATCAAAGATCGGACGGGTCCTTATGTTCTCTTTCCTAGCCATTGCAGTGGGGGCTGGTTTAGCTGGTTACACCTTTTACAAGTATAGACTTCGGGTAAGCATATCGAGTAGTTATTACAATCTTAAGAGTCATACTTACGCTACAACAACCATTATGCTAACTATTGGTAAATTTTTATAGTCATACATGGAC</genome_strand>
        <mrna_strand>AAGACCTCCAG..............................................................................................................................................GTTGGCCGAGGACCTCGTGGAGATGTGACAATCTTACCAACAATGGTCATCAATGATATTCAATATCGAG......................................................................................................................................................GGAAATTGGAGAGGACTGCTGTTTTAAAAGCCATATGTGCTGGTTTTAAGGAAACAACTGAACCTTCGATATGTTTAAGTGGAG....................................................................................................ATCTTGAAACAAACCAGTGCCTAGAAAGGAACGGTGGCTGTTGGCGGGATCCTAAATCTAACATAACTGCCTGCAAG.....................................................................................................................GATACATATAGAGGAAGAGTTTGTGAGTGCCCTTTGGTGAACGGCGTTCAGTATAAAGGAGATGGATACACATCTTGTGAAG.........................................................................................................................................CCGTTGGACCTGGAAGGTGTTCGGTAAACAACGGAGGATGCTGGTCAGAAACCAGAAATGGGCAAACATATTCAGCATGTTCA......................................................................................GAGGGTGAACTATCAGGCTGTAAGTGTCCGTATGGTTTTAAAGGGGATGGCCATAAATGTGAAG...................................................................................................ATGTAGATGAATGCAAGGAAGGACTTGTTTGTCAGTGTGATGGCTGCAGCTGTAAGGACACATGGGGTGGATTCGAGTGTAAGTGCAAAGGAAATCAACTCTACATAATGGAGCATGATACTTGTATAG...............................................................................................................................................................................................................AAAGACACTCATCAAAGATCGGACGGGTCCTTATGTTCTCTTTCCTAGCCATTGCAGTGGGGGCTGGTTTAGCTGGTTACACCTTTTACAAGTATAGACTTCGG.......................................................................................TCATACATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307996" ref_strand="+" ref_description="SGN-E307996 [cLEY-14-K11]">
      <seq>tgctgaggaggtcatgaaatcacttgatctaccggttgacaagataaagaaatgcatgggcgatccagaggctaatgttgaaaatgatgtgttgaagactgagcaagacctccaggttggccgaggacctcgtggagatgtgacaatcttaccaacaatggtcatcaatgatattcaatatcgagggaaattggagaggactgctgttttaaaagccatatgtgctggttttaaggaaacaactgaaccttcgatatgtttaagtggagatcttgaaacaaaccagtgcctagaaaggaacggtggctgttggcgggatcctaaatctaacataactgcctgcaaggatacatatagaggaagagtttgtgagtgccctttggtgaacggcgttcagtataaaggagatggatacacatcttgtgaagccgttggacctggaaggtgttcggtaaacaacggaggatgctggtcagaaaccagaaatgggcaaacatattcagcatgttcagagggtgaactatcaggctgtaagtgtccgtatggttttaaaggggatggccataaatgtgaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="46100" stop="44098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45800" g_stop="45775" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45774" i_stop="45681" i_length="94">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45680" g_stop="45592" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="115" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45591" i_stop="45450" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45449" g_stop="45380" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="185" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45379" i_stop="45230" i_length="150">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45229" g_stop="45146" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="269" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45145" i_stop="45046" i_length="100">
            <donor d_prob="0.515" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45045" g_stop="44969" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="346" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44968" i_stop="44852" i_length="117">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44851" g_stop="44770" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="428" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44769" i_stop="44633" i_length="137">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44632" g_stop="44550" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="511" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44549" i_stop="44464" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44463" g_stop="44400" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="575" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E307996" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45800" e_stop="45775"/>
          <exon e_start="45680" e_stop="45592"/>
          <exon e_start="45449" e_stop="45380"/>
          <exon e_start="45229" e_stop="45146"/>
          <exon e_start="45045" e_stop="44969"/>
          <exon e_start="44851" e_stop="44770"/>
          <exon e_start="44632" e_stop="44550"/>
          <exon e_start="44463" e_stop="44400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGAGGAGGTCATGAAATCACTTGGTATCTCCCTTTCGAGTTCTATTTTTTTTGGTCATTATTGATAATATATACTGTTCTCAGTAGTTACTCTTTGAGTTTTTATTTGTTTCATCAGATCTACCGGTTGACAAGATAAAGAAATGCATGGGCGATCCAGAGGCTAATGTTGAAAATGATGTGTTGAAGACTGAGCAAGACCTCCAGGTATCTTCATTTCTGAAAATCTCTAATCATTTCATAATTTGTGACATAATTGACCATTTTGTGATTTTACAGATATAAATATCTATGTTATCATGAATATATTACATATAAACATAACTTCTTCTTTTGTTTCCCTTAAAAGGTTGGCCGAGGACCTCGTGGAGATGTGACAATCTTACCAACAATGGTCATCAATGATATTCAATATCGAGGTATGATGTAGACGTAGAAAAATAAGTTCAACATAAACTAACTAATTGCTTATATTTGTAGCTTTCTTATTGATAAATCTTCAGGGGGATATAATATTCTCCTCGGATCACTCTTTGAGTACTCAAGTTCTTTTTTACTGTTTCTTTAAGGGAAATTGGAGAGGACTGCTGTTTTAAAAGCCATATGTGCTGGTTTTAAGGAAACAACTGAACCTTCGATATGTTTAAGTGGAGGTTTGACACCATTCCTTTCTTCAGGATCTTGACTACCAGAGTTATTGCATAAAATTGAAAGAGTTAGCTAATTGTTGCTTATATGCTCAATGAACAATAGATCTTGAAACAAACCAGTGCCTAGAAAGGAACGGTGGCTGTTGGCGGGATCCTAAATCTAACATAACTGCCTGCAAGGTATGGACAATAATGCTCTTTGAAACCTCTATGAAGTTATCATCTTCCTTCGTGGAAAACTATTGTGGTATATATAACAACCTTTTACATGAACCTCGTGCTTGTGTTGTTCTAAAGGATACATATAGAGGAAGAGTTTGTGAGTGCCCTTTGGTGAACGGCGTTCAGTATAAAGGAGATGGATACACATCTTGTGAAGGTAAGGAAGTGTTGCTTCTTGTTCTTTAGTTATACGTCCATTAATTGACAATTGGCCTATCGAATTGCTTGTCACTCTTGAGAATTGGATGACTTAAATATTTTTTCCCCTCTAACTGGCTTGCAATCGATTGACAGCCGTTGGACCTGGAAGGTGTTCGGTAAACAACGGAGGATGCTGGTCAGAAACCAGAAATGGGCAAACATATTCAGCATGTTCAGTTCAGTAAAACCAATACTTTCTTTAACTGTGTTTAGTCAAGATTAAACCATTGTATGTGCTAAAATCTGGTTTAACGCAAAGCAGGAGGGTGAACTATCAGGCTGTAAGTGTCCGTATGGTTTTAAAGGGGATGGCCATAAATGTGAAG</genome_strand>
        <mrna_strand>TGCTGAGGAGGTCATGAAATCACTTG..............................................................................................ATCTACCGGTTGACAAGATAAAGAAATGCATGGGCGATCCAGAGGCTAATGTTGAAAATGATGTGTTGAAGACTGAGCAAGACCTCCAG..............................................................................................................................................GTTGGCCGAGGACCTCGTGGAGATGTGACAATCTTACCAACAATGGTCATCAATGATATTCAATATCGAG......................................................................................................................................................GGAAATTGGAGAGGACTGCTGTTTTAAAAGCCATATGTGCTGGTTTTAAGGAAACAACTGAACCTTCGATATGTTTAAGTGGAG....................................................................................................ATCTTGAAACAAACCAGTGCCTAGAAAGGAACGGTGGCTGTTGGCGGGATCCTAAATCTAACATAACTGCCTGCAAG.....................................................................................................................GATACATATAGAGGAAGAGTTTGTGAGTGCCCTTTGGTGAACGGCGTTCAGTATAAAGGAGATGGATACACATCTTGTGAAG.........................................................................................................................................CCGTTGGACCTGGAAGGTGTTCGGTAAACAACGGAGGATGCTGGTCAGAAACCAGAAATGGGCAAACATATTCAGCATGTTCA......................................................................................GAGGGTGAACTATCAGGCTGTAAGTGTCCGTATGGTTTTAAAGGGGATGGCCATAAATGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305162" ref_strand="+" ref_description="SGN-E305162 [cLEY-18-L17]">
      <seq>tctttgagaacttgaagcagctttgcgtgcatagagttgcaaatgagagtagccgttcttgggtttggtgggactatgtgacggattttcatattagatgttcaatgaagcaaaagcgatacagcaaagaatgtgctgaggaggtcatgaaatcacttgatctaccggttgacaagataaagaaatgcatgggcgatccagaggctaatgttgaaaatgatgtgttgaagactgagcaagacctccaggttggccgaggacctcgtggagatgtgacaatcttaccaacaatggtcatcaatgatattcaatatcgagggaaattggagaggactgctgttttaaaagccatatgtgctggttttaaggaaacaactgaaccttcgatatgtttaagtggagatcttgaaacaaaccagtgcctataaaggaacggtggctgttggcgggatcctaaatctaacataactgcctgcaaggatacatatagaggaagagtttgtgagtgccctttggtgaacggcgttcagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="46233" stop="44499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45933" g_stop="45775" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45774" i_stop="45681" i_length="94">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45680" g_stop="45592" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="248" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45591" i_stop="45450" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45449" g_stop="45380" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="318" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45379" i_stop="45230" i_length="150">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45229" g_stop="45146" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="402" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45145" i_stop="45046" i_length="100">
            <donor d_prob="0.515" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45045" g_stop="44969" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="479" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44968" i_stop="44852" i_length="117">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44851" g_stop="44799" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="532" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E305162" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45933" e_stop="45775"/>
          <exon e_start="45680" e_stop="45592"/>
          <exon e_start="45449" e_stop="45380"/>
          <exon e_start="45229" e_stop="45146"/>
          <exon e_start="45045" e_stop="44969"/>
          <exon e_start="44851" e_stop="44799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTGAGAACTTGAGGCAGCTTTGCGTGCATAGAGTTGCAAATGAGAGTAGCCGTTCTTGGGTTTGGTGGGACTATGTGACGGATTTTCATATTAGATGTTCAATGAAGCAAAAGCGATACAGCAAAGAATGTGCTGAGGAGGTCATGAAATCACTTGGTATCTCCCTTTCGAGTTCTATTTTTTTTGGTCATTATTGATAATATATACTGTTCTCAGTAGTTACTCTTTGAGTTTTTATTTGTTTCATCAGATCTACCGGTTGACAAGATAAAGAAATGCATGGGCGATCCAGAGGCTAATGTTGAAAATGATGTGTTGAAGACTGAGCAAGACCTCCAGGTATCTTCATTTCTGAAAATCTCTAATCATTTCATAATTTGTGACATAATTGACCATTTTGTGATTTTACAGATATAAATATCTATGTTATCATGAATATATTACATATAAACATAACTTCTTCTTTTGTTTCCCTTAAAAGGTTGGCCGAGGACCTCGTGGAGATGTGACAATCTTACCAACAATGGTCATCAATGATATTCAATATCGAGGTATGATGTAGACGTAGAAAAATAAGTTCAACATAAACTAACTAATTGCTTATATTTGTAGCTTTCTTATTGATAAATCTTCAGGGGGATATAATATTCTCCTCGGATCACTCTTTGAGTACTCAAGTTCTTTTTTACTGTTTCTTTAAGGGAAATTGGAGAGGACTGCTGTTTTAAAAGCCATATGTGCTGGTTTTAAGGAAACAACTGAACCTTCGATATGTTTAAGTGGAGGTTTGACACCATTCCTTTCTTCAGGATCTTGACTACCAGAGTTATTGCATAAAATTGAAAGAGTTAGCTAATTGTTGCTTATATGCTCAATGAACAATAGATCTTGAAACAAACCAGTGCCTAGAAAGGAACGGTGGCTGTTGGCGGGATCCTAAATCTAACATAACTGCCTGCAAGGTATGGACAATAATGCTCTTTGAAACCTCTATGAAGTTATCATCTTCCTTCGTGGAAAACTATTGTGGTATATATAACAACCTTTTACATGAACCTCGTGCTTGTGTTGTTCTAAAGGATACATATAGAGGAAGAGTTTGTGAGTGCCCTTTGGTGAACGGCGTTCAGTA</genome_strand>
        <mrna_strand>TCTTTGAGAACTTGAAGCAGCTTTGCGTGCATAGAGTTGCAAATGAGAGTAGCCGTTCTTGGGTTTGGTGGGACTATGTGACGGATTTTCATATTAGATGTTCAATGAAGCAAAAGCGATACAGCAAAGAATGTGCTGAGGAGGTCATGAAATCACTTG..............................................................................................ATCTACCGGTTGACAAGATAAAGAAATGCATGGGCGATCCAGAGGCTAATGTTGAAAATGATGTGTTGAAGACTGAGCAAGACCTCCAG..............................................................................................................................................GTTGGCCGAGGACCTCGTGGAGATGTGACAATCTTACCAACAATGGTCATCAATGATATTCAATATCGAG......................................................................................................................................................GGAAATTGGAGAGGACTGCTGTTTTAAAAGCCATATGTGCTGGTTTTAAGGAAACAACTGAACCTTCGATATGTTTAAGTGGAG....................................................................................................ATCTTGAAACAAACCAGTGCCTATAAAGGAACGGTGGCTGTTGGCGGGATCCTAAATCTAACATAACTGCCTGCAAG.....................................................................................................................GATACATATAGAGGAAGAGTTTGTGAGTGCCCTTTGGTGAACGGCGTTCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231100" ref_strand="-" ref_description="SGN-E231100 [cLED-5-J24]">
      <seq>gctggaaccaaaaatctctatatctcttcatttttctatgattatgcttctacagttggtatagtggatccaaaagaggcctatggtataactcagccaatacaatactataaagcagcgacgctggcttgtaagactaagaagcaaaacatgaaatcggtattccctaacattaacgataaggacataccctttatctgcatggatttattatatgaatacactttgctggtaaatggatttggtattgatccaataagaaagattacagtggtgcatcaagttaattacaaaaatcaccttgttgaagctgcatggccattaggctctgctattgatgctgtctcatccacaacatcagaaaatatgatttcatatgttgggaggataagttattagtgttaatttcatgtttacttaaggactttgttgatttgttttcatgtgttaaaaattgattagagcaatttctcctatggtcgatttagtaggagctgcagctgtttctattgattctccttatttggtatttcaaaaataaatggtgtttttctttttaaaaaaaaaaaaaaaaaactcagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="56096" stop="7913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55796" g_stop="55743" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55742" i_stop="55664" i_length="79">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55663" g_stop="55474" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="244" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55473" i_stop="55375" i_length="99">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55374" g_stop="55060" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="559" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55059" i_stop="54558" i_length="502">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54557" g_stop="54532" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="585" r_length="26" r_score="0.692"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E231100" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231100" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="55796" e_stop="55743"/>
          <exon e_start="55663" e_stop="55474"/>
          <exon e_start="55374" e_stop="55060"/>
          <exon e_start="54557" e_stop="54532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTATGATTATGCTTCTACAGTAAGTACATCATATTATAAAAATGAAATAAGTATATACATATTTATTCACGATTCGATTAATATTTTAATTAATGTAGGTTGGTATAGTGGATCCAAAAGAGGCCTATGGTATAACTCAGCCAATACAATACTATAAAGCAGCGACGCTGGCTTGTAAGACTAAGAAGCAAAACATGAAATCGGTATTCCCTAACATTAACGATAAGGACATACCCTTTATCTGCATGGATTTATTATATGAATACACTTTGCTGGTAAATGGATTTGGTAAGTTTATTTAATTTCTCTTCTTTTTTTTTTTAGCTAATATTCCTTAATTATACCTCAAATTTTTACATTTTAATTAATTAATGAATGAATAAACAGGTATTGATCCAATAAGAAAGATTACAGTGGTGCATCAAGTTAATTACAAAAATCACCTTGTTGAAGCTGCATGGCCATTAGGCTCTGCTATTGATGCTGTCTCATCCACAACATCAGAAAATATGATTTCATATGTTGGGAGGATAAGTTATTAGTGTTAATTTCATGTTTACTTAAGGACTTTGTTGATTTGTTTTCATGTGTTAAAAATTGATTAGAGCAATTTCTCCTATGGTCGATTTAGTAGGAGCTGCAGCTGTTTCTATTGATTCTCCTTATTTGGTATTTCAAAAATAAATGGTGTTTTTCTTTTTAATTTTCAACTTTAAAATGGAGATTTATGTAAGCAATCTAAAGAGATTATCAAAATCAAGATTTGCTTGTTTATATATAAGGCAGTAAGTTTAGTATTTTCTCAATTATTTCTTGTTGTAATATAGTTATTTAATTTTCACAATTTCATCTTTATTCTCTTTCTGTTCCTATTTAGTTGTCTTTCTATTCCTATTTAGTTGTCCACTTTAGAAGTGTTGCACATATTAAGACACCAATGATTATCATAGGTTAGTTACAATTTTACTTTTGACTTAAAAGATTATGCAGCTCCCAAGTATAATAAATGTATTTTTTGATTTCAAAAAGCATGTATTAAAACTTAGTAGTACTAGAAGTTTTCTAGAATTAAATAAGGACATATTAGAAAAAAAATTATTTTCTTTCTTATTTCGTTAAAATGAATAAGTAAATAGAGACAGATATAAAATGAAATATGAACAGATAAATAGAAACGGAGAGAGTATTATATATTTATTTTAAGGAGAAAAAAAAAAGAAAAAGGGACAA</genome_strand>
        <mrna_strand>GCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTATGATTATGCTTCTACA...............................................................................GTTGGTATAGTGGATCCAAAAGAGGCCTATGGTATAACTCAGCCAATACAATACTATAAAGCAGCGACGCTGGCTTGTAAGACTAAGAAGCAAAACATGAAATCGGTATTCCCTAACATTAACGATAAGGACATACCCTTTATCTGCATGGATTTATTATATGAATACACTTTGCTGGTAAATGGATTTG...................................................................................................GTATTGATCCAATAAGAAAGATTACAGTGGTGCATCAAGTTAATTACAAAAATCACCTTGTTGAAGCTGCATGGCCATTAGGCTCTGCTATTGATGCTGTCTCATCCACAACATCAGAAAATATGATTTCATATGTTGGGAGGATAAGTTATTAGTGTTAATTTCATGTTTACTTAAGGACTTTGTTGATTTGTTTTCATGTGTTAAAAATTGATTAGAGCAATTTCTCCTATGGTCGATTTAGTAGGAGCTGCAGCTGTTTCTATTGATTCTCCTTATTTGGTATTTCAAAAATAAATGGTGTTTTTCTTTTTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAACTCAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237621" ref_strand="-" ref_description="SGN-E237621 [cLED-19-G23]">
      <seq>gactaagaagcaaaacatgaaatcggtattccctaacattaacgataaggacataccctttatctgcatggatttattatatgaatacactttgctggtaaatggatttggtattgatccaataagaaagattacagtggtgcatcaagttaattacaaaaatcaccttgttgaagctgcatggccattaggctctgctattgatgctgtctcatccacaacatcagaaaatatgatttcatatgttgggaggataagttattagtgttaatttcatgtttacttaaggactttgttgatttgttttcatgtgttaaaaattgattagagcaatttctcctatggtcgatttagtaggagctgcagctgtttctattgattctccttatttggtatttcaaaaataaatggtgtttttctttttaaaaaaaaaaaaaaaaaactcagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="55883" stop="7913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55583" g_stop="55474" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55473" i_stop="55375" i_length="99">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55374" g_stop="55060" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="425" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55059" i_stop="54558" i_length="502">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54557" g_stop="54532" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="451" r_length="26" r_score="0.692"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E237621" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237621" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="55583" e_stop="55474"/>
          <exon e_start="55374" e_stop="55060"/>
          <exon e_start="54557" e_stop="54532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTAAGAAGCAAAACATGAAATCGGTATTCCCTAACATTAACGATAAGGACATACCCTTTATCTGCATGGATTTATTATATGAATACACTTTGCTGGTAAATGGATTTGGTAAGTTTATTTAATTTCTCTTCTTTTTTTTTTTAGCTAATATTCCTTAATTATACCTCAAATTTTTACATTTTAATTAATTAATGAATGAATAAACAGGTATTGATCCAATAAGAAAGATTACAGTGGTGCATCAAGTTAATTACAAAAATCACCTTGTTGAAGCTGCATGGCCATTAGGCTCTGCTATTGATGCTGTCTCATCCACAACATCAGAAAATATGATTTCATATGTTGGGAGGATAAGTTATTAGTGTTAATTTCATGTTTACTTAAGGACTTTGTTGATTTGTTTTCATGTGTTAAAAATTGATTAGAGCAATTTCTCCTATGGTCGATTTAGTAGGAGCTGCAGCTGTTTCTATTGATTCTCCTTATTTGGTATTTCAAAAATAAATGGTGTTTTTCTTTTTAATTTTCAACTTTAAAATGGAGATTTATGTAAGCAATCTAAAGAGATTATCAAAATCAAGATTTGCTTGTTTATATATAAGGCAGTAAGTTTAGTATTTTCTCAATTATTTCTTGTTGTAATATAGTTATTTAATTTTCACAATTTCATCTTTATTCTCTTTCTGTTCCTATTTAGTTGTCTTTCTATTCCTATTTAGTTGTCCACTTTAGAAGTGTTGCACATATTAAGACACCAATGATTATCATAGGTTAGTTACAATTTTACTTTTGACTTAAAAGATTATGCAGCTCCCAAGTATAATAAATGTATTTTTTGATTTCAAAAAGCATGTATTAAAACTTAGTAGTACTAGAAGTTTTCTAGAATTAAATAAGGACATATTAGAAAAAAAATTATTTTCTTTCTTATTTCGTTAAAATGAATAAGTAAATAGAGACAGATATAAAATGAAATATGAACAGATAAATAGAAACGGAGAGAGTATTATATATTTATTTTAAGGAGAAAAAAAAAAGAAAAAGGGACAA</genome_strand>
        <mrna_strand>GACTAAGAAGCAAAACATGAAATCGGTATTCCCTAACATTAACGATAAGGACATACCCTTTATCTGCATGGATTTATTATATGAATACACTTTGCTGGTAAATGGATTTG...................................................................................................GTATTGATCCAATAAGAAAGATTACAGTGGTGCATCAAGTTAATTACAAAAATCACCTTGTTGAAGCTGCATGGCCATTAGGCTCTGCTATTGATGCTGTCTCATCCACAACATCAGAAAATATGATTTCATATGTTGGGAGGATAAGTTATTAGTGTTAATTTCATGTTTACTTAAGGACTTTGTTGATTTGTTTTCATGTGTTAAAAATTGATTAGAGCAATTTCTCCTATGGTCGATTTAGTAGGAGCTGCAGCTGTTTCTATTGATTCTCCTTATTTGGTATTTCAAAAATAAATGGTGTTTTTCTTTTTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAACTCAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233729" ref_strand="-" ref_description="SGN-E233729 [cLED-14-E17]">
      <seq>gctggtaaatggatttggtattgatccaataagaaagattacagtggtgcatcaagttaattacaaaaatcaccttgttgaagctgcatggccattaggctctgctattgatgctgtctcatccacaacatcagaaaatatgatttcatatgttgggaggataagttattagtgttaatttcatgtttacttaaggactttgttgatttgttttcatgtgttaaaaattgattagagcaatttctcctatggtcgatttagtaggagctgcagctgtttctattgattctccttatttggtatttcaaaaataaatggtgtttttctttttaaaaaaaaaaaaaaaaaactcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="55790" stop="7915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55490" g_stop="55474" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55473" i_stop="55375" i_length="99">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55374" g_stop="55060" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="332" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55059" i_stop="54558" i_length="502">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54557" g_stop="54535" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="355" r_length="23" r_score="0.696"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E233729" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233729" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="55490" e_stop="55474"/>
          <exon e_start="55374" e_stop="55060"/>
          <exon e_start="54557" e_stop="54535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTAAATGGATTTGGTAAGTTTATTTAATTTCTCTTCTTTTTTTTTTTAGCTAATATTCCTTAATTATACCTCAAATTTTTACATTTTAATTAATTAATGAATGAATAAACAGGTATTGATCCAATAAGAAAGATTACAGTGGTGCATCAAGTTAATTACAAAAATCACCTTGTTGAAGCTGCATGGCCATTAGGCTCTGCTATTGATGCTGTCTCATCCACAACATCAGAAAATATGATTTCATATGTTGGGAGGATAAGTTATTAGTGTTAATTTCATGTTTACTTAAGGACTTTGTTGATTTGTTTTCATGTGTTAAAAATTGATTAGAGCAATTTCTCCTATGGTCGATTTAGTAGGAGCTGCAGCTGTTTCTATTGATTCTCCTTATTTGGTATTTCAAAAATAAATGGTGTTTTTCTTTTTAATTTTCAACTTTAAAATGGAGATTTATGTAAGCAATCTAAAGAGATTATCAAAATCAAGATTTGCTTGTTTATATATAAGGCAGTAAGTTTAGTATTTTCTCAATTATTTCTTGTTGTAATATAGTTATTTAATTTTCACAATTTCATCTTTATTCTCTTTCTGTTCCTATTTAGTTGTCTTTCTATTCCTATTTAGTTGTCCACTTTAGAAGTGTTGCACATATTAAGACACCAATGATTATCATAGGTTAGTTACAATTTTACTTTTGACTTAAAAGATTATGCAGCTCCCAAGTATAATAAATGTATTTTTTGATTTCAAAAAGCATGTATTAAAACTTAGTAGTACTAGAAGTTTTCTAGAATTAAATAAGGACATATTAGAAAAAAAATTATTTTCTTTCTTATTTCGTTAAAATGAATAAGTAAATAGAGACAGATATAAAATGAAATATGAACAGATAAATAGAAACGGAGAGAGTATTATATATTTATTTTAAGGAGAAAAAAAAAAGAAAAAGGGA</genome_strand>
        <mrna_strand>GCTGGTAAATGGATTTG...................................................................................................GTATTGATCCAATAAGAAAGATTACAGTGGTGCATCAAGTTAATTACAAAAATCACCTTGTTGAAGCTGCATGGCCATTAGGCTCTGCTATTGATGCTGTCTCATCCACAACATCAGAAAATATGATTTCATATGTTGGGAGGATAAGTTATTAGTGTTAATTTCATGTTTACTTAAGGACTTTGTTGATTTGTTTTCATGTGTTAAAAATTGATTAGAGCAATTTCTCCTATGGTCGATTTAGTAGGAGCTGCAGCTGTTTCTATTGATTCTCCTTATTTGGTATTTCAAAAATAAATGGTGTTTTTCTTTTTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAACTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232858" ref_strand="+" ref_description="SGN-E232858 [cLED-8-A10]">
      <seq>tagtctgagttttttttttttttttttaaaaagaaaaacaccatttatttttgaaataccaaataaggagaatcaatagaaacagctgcagctcctactaaatcgaccataggagaaattgctctaatcaatttttaacacatgaaaacaaatcaacaaagtccttaagtaaacatgaaattaacactaataacttatcctcccaacatatgaaatcatattttctgatgttgtggatgagacagcatcaatagcagagcctaatggccatgcagcttcaacaaggtgatttttgtgattaacttgatgcacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="7913" stop="55647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55035" g_stop="55347" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E232858" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55035" e_stop="55347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTCCATTTTAAAGTTGAAA-ATTAAAAAGAAAAACACCATTTATTTTTGAAATACCAAATAAGGAGAATCAATAGAAACAGCTGCAGCTCCTACTAAATCGACCATAGGAGAAATTGCTCTAATCAATTTTTAACACATGAAAACAAATCAACAAAGTCCTTAAGTAAACATGAAATTAACACTAATAACTTATCCTCCCAACATATGAAATCATATTTTCTGATGTTGTGGATGAGACAGCATCAATAGCAGAGCCTAATGGCCATGCAGCTTCAACAAGGTGATTTTTGTAATTAACTTGATGCACCA</genome_strand>
        <mrna_strand>TAGTCTGAGTTTTTTTTTTTTTTTTTTAAAAAGAAAAACACCATTTATTTTTGAAATACCAAATAAGGAGAATCAATAGAAACAGCTGCAGCTCCTACTAAATCGACCATAGGAGAAATTGCTCTAATCAATTTTTAACACATGAAAACAAATCAACAAAGTCCTTAAGTAAACATGAAATTAACACTAATAACTTATCCTCCCAACATATGAAATCATATTTTCTGATGTTGTGGATGAGACAGCATCAATAGCAGAGCCTAATGGCCATGCAGCTTCAACAAGGTGATTTTTGTGATTAACTTGATGCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E216294" ref_strand="+" ref_description="SGN-E216294 [cLEL-13-N22](-)">
      <seq>tctcttcatttttctatgattatgcttctacagttggtatagtggatccaacagaggcctatggtataactcagccaatacaatacttaaagcagcgacgctgacttgtaagactaagaagcaaaacatgaaatcggtattccctaacattaacgataaggacatacccctttatctgcatggatttattatatgaatacactttgctggtaaatggatttggtattgatccaataagaaagattacagtggtgcatcaagttaattacaaaaatcaccttgttgaagctgcatggccattaggctctgctattgatgctgtctcatccacaacatcagaaaatatgatttcatatgttgggaggataagttattagtgttaatttcatgtttacttaaggactttgttgatttgttttcatgtgttaaaaattgattagagcaatttctcctatggtcgatttagtaggagctgcagctgtttctattgattctccttatttggtatttcaaaaataaatggtgtttttctttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="56074" stop="54759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55774" g_stop="55743" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55742" i_stop="55664" i_length="79">
            <donor d_prob="0.851" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55663" g_stop="55474" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="222" r_length="190" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55473" i_stop="55375" i_length="99">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55374" g_stop="55060" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="537" r_length="315" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="538" polyA_stop="553"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E216294" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55774" e_stop="55743"/>
          <exon e_start="55663" e_stop="55474"/>
          <exon e_start="55374" e_stop="55060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCATTTTTCTATGATTATGCTTCTACAGTAAGTACATCATATTATAAAAATGAAATAAGTATATACATATTTATTCACGATTCGATTAATATTTTAATTAATGTAGGTTGGTATAGTGGATCCAAAAGAGGCCTATGGTATAACTCAGCCAATACAATACTATAAAGCAGCGACGCTGGCTTGTAAGACTAAGAAGCAAAACATGAAATCGGTATTCCCTAACATTAACGATAAGGACATA-CCCTTTATCTGCATGGATTTATTATATGAATACACTTTGCTGGTAAATGGATTTGGTAAGTTTATTTAATTTCTCTTCTTTTTTTTTTTAGCTAATATTCCTTAATTATACCTCAAATTTTTACATTTTAATTAATTAATGAATGAATAAACAGGTATTGATCCAATAAGAAAGATTACAGTGGTGCATCAAGTTAATTACAAAAATCACCTTGTTGAAGCTGCATGGCCATTAGGCTCTGCTATTGATGCTGTCTCATCCACAACATCAGAAAATATGATTTCATATGTTGGGAGGATAAGTTATTAGTGTTAATTTCATGTTTACTTAAGGACTTTGTTGATTTGTTTTCATGTGTTAAAAATTGATTAGAGCAATTTCTCCTATGGTCGATTTAGTAGGAGCTGCAGCTGTTTCTATTGATTCTCCTTATTTGGTATTTCAAAAATAAATGGTGTTTTTCTTTTTA</genome_strand>
        <mrna_strand>TCTCTTCATTTTTCTATGATTATGCTTCTACA...............................................................................GTTGGTATAGTGGATCCAACAGAGGCCTATGGTATAACTCAGCCAATACAATACT-TAAAGCAGCGACGCTGACTTGTAAGACTAAGAAGCAAAACATGAAATCGGTATTCCCTAACATTAACGATAAGGACATACCCCTTTATCTGCATGGATTTATTATATGAATACACTTTGCTGGTAAATGGATTTG...................................................................................................GTATTGATCCAATAAGAAAGATTACAGTGGTGCATCAAGTTAATTACAAAAATCACCTTGTTGAAGCTGCATGGCCATTAGGCTCTGCTATTGATGCTGTCTCATCCACAACATCAGAAAATATGATTTCATATGTTGGGAGGATAAGTTATTAGTGTTAATTTCATGTTTACTTAAGGACTTTGTTGATTTGTTTTCATGTGTTAAAAATTGATTAGAGCAATTTCTCCTATGGTCGATTTAGTAGGAGCTGCAGCTGTTTCTATTGATTCTCCTTATTTGGTATTTCAAAAATAAATGGTGTTTTTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238012" ref_strand="-" ref_description="SGN-E238012 [cLED-18-B12]">
      <seq>tggtataactcagccaatacaatactataaagcaggtacgatggcttgtaagactaagaagcaaaacatgaaatcggtattccataacattaacgataaggacatgccctttatatgcatggatttattatatgaatacactttgctggtaaatggatttggtattgatccaataagaaagattacagtggtgcatcaagttaattacaaaaatcaccttgttgaagctgcatggccattaggctatgctattgatgctgtctcatccacaacatcagaaaatatgatttcatatgttgggaggataagttattagtgttaatttcatgtttacttaaggactttgttgatttgttttcatgtgttaaaaattgattagagcaatttctcctatggtcgatttagtagcacacgcccctgtctacattgattctccttattcggtattccaaaaatcaatggtgtttttctttttacacaaaaaaccaaaaaactcagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="55934" stop="54760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55634" g_stop="55474" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55473" i_stop="55375" i_length="99">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55374" g_stop="55060" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="476" r_length="315" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E238012" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238012" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="55634" e_stop="55474"/>
          <exon e_start="55374" e_stop="55060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATAACTCAGCCAATACAATACTATAAAGCAGCGACGCTGGCTTGTAAGACTAAGAAGCAAAACATGAAATCGGTATTCCCTAACATTAACGATAAGGACATACCCTTTATCTGCATGGATTTATTATATGAATACACTTTGCTGGTAAATGGATTTGGTAAGTTTATTTAATTTCTCTTCTTTTTTTTTTTAGCTAATATTCCTTAATTATACCTCAAATTTTTACATTTTAATTAATTAATGAATGAATAAACAGGTATTGATCCAATAAGAAAGATTACAGTGGTGCATCAAGTTAATTACAAAAATCACCTTGTTGAAGCTGCATGGCCATTAGGCTCTGCTATTGATGCTGTCTCATCCACAACATCAGAAAATATGATTTCATATGTTGGGAGGATAAGTTATTAGTGTTAATTTCATGTTTACTTAAGGACTTTGTTGATTTGTTTTCATGTGTTAAAAATTGATTAGAGCAATTTCTCCTATGGTCGATTTAGTAGGAGCTGCAGCTGTTTCTATTGATTCTCCTTATTTGGTATTTCAAAAATAAATGGTGTTTTTCTTTTTA</genome_strand>
        <mrna_strand>TGGTATAACTCAGCCAATACAATACTATAAAGCAGGTACGATGGCTTGTAAGACTAAGAAGCAAAACATGAAATCGGTATTCCATAACATTAACGATAAGGACATGCCCTTTATATGCATGGATTTATTATATGAATACACTTTGCTGGTAAATGGATTTG...................................................................................................GTATTGATCCAATAAGAAAGATTACAGTGGTGCATCAAGTTAATTACAAAAATCACCTTGTTGAAGCTGCATGGCCATTAGGCTATGCTATTGATGCTGTCTCATCCACAACATCAGAAAATATGATTTCATATGTTGGGAGGATAAGTTATTAGTGTTAATTTCATGTTTACTTAAGGACTTTGTTGATTTGTTTTCATGTGTTAAAAATTGATTAGAGCAATTTCTCCTATGGTCGATTTAGTAGCACACGCCCCTGTCTACATTGATTCTCCTTATTCGGTATTCCAAAAATCAATGGTGTTTTTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348949" ref_strand="+" ref_description="SGN-E348949 [cTOF-29-I24]">
      <seq>caccattgctacaattgatcttggaggtggatcagttcaaattgcttatgctgtctcaaaacaaagtgctataaatgctccaaagttaccaaatggagacgcttatgtccaacaaaaagcacttcttggaactaattattacctctatgttcacagttttctaaattatggactattagcagctcgagctgatatcttgaaggcttctaaaaattacactagtccatgcatcgtggaagggcacaatgggtactacacatataatggagtatcttataaagctgcatcacgaaaacaaggtccaaatatcagaagatgtaaagcaataattagaaaattgcttcagattgatgcaccttgcaatcacaaaaattgttcatttgctgggatttggaatggtgagtggtgagagctggaaccaaaaatctctatatctcttcatttttctatgattatgcttctacagatggtataggtggatccaaaagaggcctatggtataactcagtcaatacaatactataaagcagcgacgctggcttgtaagactaagaagcaaaacatgacatcggtattccctaacattaacgataaggacataccctttatctgcatggatttattatatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="56806" stop="55198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56506" g_stop="56351" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56350" i_stop="56233" i_length="118">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56232" g_stop="56141" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="248" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56140" i_stop="55958" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55957" g_stop="55743" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="465" r_length="217" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55742" i_stop="55664" i_length="79">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55663" g_stop="55498" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="632" r_length="167" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E348949" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56506" e_stop="56351"/>
          <exon e_start="56232" e_stop="56141"/>
          <exon e_start="55957" e_stop="55743"/>
          <exon e_start="55663" e_stop="55498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAGGTTTCATTTCTATTATTATTATATATATTTATTTTATAGTATGCATTAATGTTTTCTAATCAATAAATTTTATTTAATTTCTCAAAATCATAATTAATTAACAACTTTATTGTTGTAGTTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATGGTACTTTCCTTTAACAAATACTTGAGCTGATATCTTTTTTTTATACCCTCTCTAGCAACTCCCACCCCCATTGCTCCTTTGGTGACTCGAACTCGAAAAAGATGCTTACCATCTGAGGAACTCCCTCTCGTCGTCTGTTGTTATTCCTTAATAAAATAGTTACAATTTTTTTTTCCCTTGAAGGGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTG-GTGGTG-GAGCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTATGATTATGCTTCTACAGTAAGTACATCATATTATAAAAATGAAATAAGTATATACATATTTATTCACGATTCGATTAATATTTTAATTAATGTAGGTTGGTATA-GTGGATCCAAAAGAGGCCTATGGTATAACTCAGCCAATACAATACTATAAAGCAGCGACGCTGGCTTGTAAGACTAAGAAGCAAAACATGAAATCGGTATTCCCTAACATTAACGATAAGGACATACCCTTTATCTGCATGGATTTATTATATGAAT</genome_strand>
        <mrna_strand>CACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAG......................................................................................................................TTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATG.......................................................................................................................................................................................GGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTGAGTGGTGAGAGCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTATGATTATGCTTCTACA...............................................................................GATGGTATAGGTGGATCCAAAAGAGGCCTATGGTATAACTCAGTCAATACAATACTATAAAGCAGCGACGCTGGCTTGTAAGACTAAGAAGCAAAACATGACATCGGTATTCCCTAACATTAACGATAAGGACATACCCTTTATCTGCATGGATTTATTATATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239902" ref_strand="+" ref_description="SGN-E239902 [cLED-29-E11]">
      <seq>aaattatggactattagcagctcgagctgatattttgaaggcttctaaaaattacactagtccatgcatcgtggaagggcacaatgggtactacacatataatggagtatcttataaagctgcatcacgaaaacaaggtccaaatatcagaagatgtaaagcaataattagaaaattgcttcagattgatgcaccttgcaatcacaaaaattgttcatttgctgggatttggaatggtggtggtggagctggaaccaaaaatctctatatctcttcatttttctatgattatgcttctacagatggtatagtggatccaaaagaggcctatggtataactcagccaatacaatactataaagcagcgacgctggcttgtaagactaacaagcaaaacatgaaatcggtattccctaacattaacgataaggacataccctctatctgcatggatttattatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="56526" stop="55201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56226" g_stop="56141" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56140" i_stop="55958" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55957" g_stop="55743" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="301" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55742" i_stop="55664" i_length="79">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55663" g_stop="55501" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="464" r_length="163" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E239902" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56226" e_stop="56141"/>
          <exon e_start="55957" e_stop="55743"/>
          <exon e_start="55663" e_stop="55501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATGGTACTTTCCTTTAACAAATACTTGAGCTGATATCTTTTTTTTATACCCTCTCTAGCAACTCCCACCCCCATTGCTCCTTTGGTGACTCGAACTCGAAAAAGATGCTTACCATCTGAGGAACTCCCTCTCGTCGTCTGTTGTTATTCCTTAATAAAATAGTTACAATTTTTTTTTCCCTTGAAGGGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTGGTGGTGGAGCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTATGATTATGCTTCTACAGTAAGTACATCATATTATAAAAATGAAATAAGTATATACATATTTATTCACGATTCGATTAATATTTTAATTAATGTAGGTTGGTATAGTGGATCCAAAAGAGGCCTATGGTATAACTCAGCCAATACAATACTATAAAGCAGCGACGCTGGCTTGTAAGACTAAGAAGCAAAACATGAAATCGGTATTCCCTAACATTAACGATAAGGACATACCCTTTATCTGCATGGATTTATTATATG</genome_strand>
        <mrna_strand>AAATTATGGACTATTAGCAGCTCGAGCTGATATTTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATG.......................................................................................................................................................................................GGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTGGTGGTGGAGCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTATGATTATGCTTCTACA...............................................................................GATGGTATAGTGGATCCAAAAGAGGCCTATGGTATAACTCAGCCAATACAATACTATAAAGCAGCGACGCTGGCTTGTAAGACTAACAAGCAAAACATGAAATCGGTATTCCCTAACATTAACGATAAGGACATACCCTCTATCTGCATGGATTTATTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326442" ref_strand="+" ref_description="SGN-E326442 [cTOC-14-B22]">
      <seq>ctatttgtatgggaatttgggcaaaaattacccagacaccattgctacaattgatcttggaggtggatcagttcaaattgcttatgctgtctcaaaacaaagtgctataaatgctccaaagttaccaaatggagacgcttatgtccaacaaaaagcacttcttggaactaattattacctctatgttcacagttttctaaattatggactattagcagctcgagctgatatcttgaaggcttctaaaaattacactagtccatgcatcgtggaagggcacaatgggtactacacatataatggagtatcttataaagctgcatcacgaaaacaaggtccaaatatcagaagatgtaaagcaataattagaaaattgcttcagattgatgcaccttgcaatcacaaaaattgttcatttgctgggatttggaatggtggtggtggagctggaaccaaaaatctctatatctcttcatttttctatgattatgcttctacagttggtatagtggatccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="56842" stop="55344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56542" g_stop="56351" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56350" i_stop="56233" i_length="118">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56232" g_stop="56141" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="284" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56140" i_stop="55958" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55957" g_stop="55743" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="499" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55742" i_stop="55664" i_length="79">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55663" g_stop="55644" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="519" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E326442" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56542" e_stop="56351"/>
          <exon e_start="56232" e_stop="56141"/>
          <exon e_start="55957" e_stop="55743"/>
          <exon e_start="55663" e_stop="55644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAGGTTTCATTTCTATTATTATTATATATATTTATTTTATAGTATGCATTAATGTTTTCTAATCAATAAATTTTATTTAATTTCTCAAAATCATAATTAATTAACAACTTTATTGTTGTAGTTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATGGTACTTTCCTTTAACAAATACTTGAGCTGATATCTTTTTTTTATACCCTCTCTAGCAACTCCCACCCCCATTGCTCCTTTGGTGACTCGAACTCGAAAAAGATGCTTACCATCTGAGGAACTCCCTCTCGTCGTCTGTTGTTATTCCTTAATAAAATAGTTACAATTTTTTTTTCCCTTGAAGGGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTGGTGGTGGAGCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTATGATTATGCTTCTACAGTAAGTACATCATATTATAAAAATGAAATAAGTATATACATATTTATTCACGATTCGATTAATATTTTAATTAATGTAGGTTGGTATAGTGGATCCAAA</genome_strand>
        <mrna_strand>CTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAG......................................................................................................................TTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATG.......................................................................................................................................................................................GGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTGGTGGTGGAGCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTATGATTATGCTTCTACA...............................................................................GTTGGTATAGTGGATCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236459" ref_strand="+" ref_description="SGN-E236459 [cLED-13-N21]">
      <seq>tttgaactatttgtatgggaatttgggcaaaaattacccagacaccattgctacaattgatcttggaggtggatcagttcaaattgcttatgctgtctcaaaacaaagtgctataaatgctccaaagttaccaaatggagacgcttatgtccaacaaaaagcacttcttggaactaattattacctctatgttcacagttttctaaattatggactattagcagctcgagctgatatcttgaaggcttctaaaaattacactagtccatgcatcgtggaagggcacaatgggtactacacatataatggagtatcttataaagctgcatcacgaaaacaaggtccaaatatcagaagatgtaaagcaataattagaaaattgcttcagattgatgcaccttgcaatcacaaaaattgttcatttgctgggatttggaatggtggtggtggagctggaaccaaaaatctctatatctcttcatttttctatgattatgcttctacagttggtatagtggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="56848" stop="55434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56548" g_stop="56351" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56350" i_stop="56233" i_length="118">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56232" g_stop="56141" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="290" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56140" i_stop="55958" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55957" g_stop="55743" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="505" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55742" i_stop="55664" i_length="79">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55663" g_stop="55648" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="521" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E236459" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56548" e_stop="56351"/>
          <exon e_start="56232" e_stop="56141"/>
          <exon e_start="55957" e_stop="55743"/>
          <exon e_start="55663" e_stop="55648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAGGTTTCATTTCTATTATTATTATATATATTTATTTTATAGTATGCATTAATGTTTTCTAATCAATAAATTTTATTTAATTTCTCAAAATCATAATTAATTAACAACTTTATTGTTGTAGTTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATGGTACTTTCCTTTAACAAATACTTGAGCTGATATCTTTTTTTTATACCCTCTCTAGCAACTCCCACCCCCATTGCTCCTTTGGTGACTCGAACTCGAAAAAGATGCTTACCATCTGAGGAACTCCCTCTCGTCGTCTGTTGTTATTCCTTAATAAAATAGTTACAATTTTTTTTTCCCTTGAAGGGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTGGTGGTGGAGCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTATGATTATGCTTCTACAGTAAGTACATCATATTATAAAAATGAAATAAGTATATACATATTTATTCACGATTCGATTAATATTTTAATTAATGTAGGTTGGTATAGTGGATC</genome_strand>
        <mrna_strand>TTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAG......................................................................................................................TTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATG.......................................................................................................................................................................................GGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTGGTGGTGGAGCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTATGATTATGCTTCTACA...............................................................................GTTGGTATAGTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315530" ref_strand="+" ref_description="SGN-E315530 [cTOA-22-C17]">
      <seq>gcagggctgaggttattaaagggtgattcatctgaaaagattctgcaagcagtaagagatatgctgaaaaatgaaactactctgagttacaaggatgaatgggtctctgttctcgaaggaactctagaaggttcttatttttgggttgctttgaactatttgtatgggaatttgggcaaaaattacccagacaccattgctacaattgatcttggaggtggatcagttcaaattgcttatgctgtctcaaaacaaagtgctataaatgctccaaagttaccaaatggagacgcttatgtccaacaaaaagcacttcttggaactaattattacctctatgttcacagttttctaaattatggactattagcagctcgagctgatatcttgaaggcttctaaaaattacactagtccatgcatcgtggaagggcacaatgggtactacacatataatggagtatcttataaagctgcatcacgaaaacaaggtccaaatatcagaagatgtaaagcaataattagaaaattgcttcagattgatgcaccttgcaatcacaaaaattgttcatttgctgggatttggaatggtggtggtggagctggaaccaaaaatctctatatctcttcatttttctatgattatgcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="57385" stop="55446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57085" g_stop="57035" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57034" i_stop="56895" i_length="140">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56894" g_stop="56802" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="144" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56351" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="347" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56350" i_stop="56233" i_length="118">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56232" g_stop="56141" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="439" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56140" i_stop="55958" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55957" g_stop="55746" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="651" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E315530" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57085" e_stop="57035"/>
          <exon e_start="56894" e_stop="56802"/>
          <exon e_start="56553" e_stop="56351"/>
          <exon e_start="56232" e_stop="56141"/>
          <exon e_start="55957" e_stop="55746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCAGTACATTTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGGGTAAGTTTAATCATCAAACGTTCTTAATTAACTTCACAAAACAAATAATTTTGTGATTTTTCTCTTATAATTTGGTAAATTACATTTGGTGTTTATACATCGAAACTAAACAATTAAAAAGCCTATTCTTGGTTGAGTTTGTTGTACGAGACTTGCCTAATACAATATACTTTTTGACTATGATTTATTCATTTGCAATCAATTATTAAAATTAGAATGACTTTATTTTTTTCTTAAAAAAAATGCAGGTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAGGTTTCATTTCTATTATTATTATATATATTTATTTTATAGTATGCATTAATGTTTTCTAATCAATAAATTTTATTTAATTTCTCAAAATCATAATTAATTAACAACTTTATTGTTGTAGTTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATGGTACTTTCCTTTAACAAATACTTGAGCTGATATCTTTTTTTTATACCCTCTCTAGCAACTCCCACCCCCATTGCTCCTTTGGTGACTCGAACTCGAAAAAGATGCTTACCATCTGAGGAACTCCCTCTCGTCGTCTGTTGTTATTCCTTAATAAAATAGTTACAATTTTTTTTTCCCTTGAAGGGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTGGTGGTGGAGCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTATGATTATGCTTCT</genome_strand>
        <mrna_strand>GCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCA............................................................................................................................................GTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGG........................................................................................................................................................................................................................................................GTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAG......................................................................................................................TTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATG.......................................................................................................................................................................................GGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTGGTGGTGGAGCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTATGATTATGCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242732" ref_strand="+" ref_description="SGN-E242732 [cLED-31-A2]">
      <seq>tttgaactatttgtatgggaatttgggcaaaaattacccagacaccattgctacaattgatcttggaggtggatcagctcaaattgcttatgctgtctcaaaacaaagtgctataaatgctccaaagttaccaaatggagacgcttatgtccaacaaaaagcacttcttggaactaattattacctctatgttcacagttttctaaattatggactattagcagctcgagctgatatcttgaaggcttctaaaaattacactagtccatgcatcgtggaagggcacaatgggtactacacatataatggagtatcttataaagctgcatcacgaaaacaaggtccaaatatcagaagatgtaaagcaataattagaaaattgcttcagattgatgcaccttgcaatcacaaaaattgttcatttgctgggatttggaatggtggtggcggagctggaaccaaaaatctctatatctcttcatttttctatgactatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="56848" stop="55449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56548" g_stop="56351" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56350" i_stop="56233" i_length="118">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56232" g_stop="56141" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="290" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56140" i_stop="55958" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55957" g_stop="55749" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="499" r_length="209" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E242732" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56548" e_stop="56351"/>
          <exon e_start="56232" e_stop="56141"/>
          <exon e_start="55957" e_stop="55749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAGGTTTCATTTCTATTATTATTATATATATTTATTTTATAGTATGCATTAATGTTTTCTAATCAATAAATTTTATTTAATTTCTCAAAATCATAATTAATTAACAACTTTATTGTTGTAGTTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATGGTACTTTCCTTTAACAAATACTTGAGCTGATATCTTTTTTTTATACCCTCTCTAGCAACTCCCACCCCCATTGCTCCTTTGGTGACTCGAACTCGAAAAAGATGCTTACCATCTGAGGAACTCCCTCTCGTCGTCTGTTGTTATTCCTTAATAAAATAGTTACAATTTTTTTTTCCCTTGAAGGGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTGGTGGTGGAGCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTATGATTATGCT</genome_strand>
        <mrna_strand>TTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGCTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAG......................................................................................................................TTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATG.......................................................................................................................................................................................GGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTGGTGGCGGAGCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTATGACTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241529" ref_strand="+" ref_description="SGN-E241529 [cLED-28-F6]">
      <seq>tgggttgctttgaactatttgtatgggaatttgggcaaaaattacccagacaccattgctacaattgatcttggaggtggatcagttcaaattgcttatgctgtctcaaaacaaagtgctataaatgctccaaagttaccaaatggagacgcttatgtccaacaaaaagcacttcttggaactaattattacctctatgttcacagttttctaaattatggactattagcagctcgagctgatatcttgaaggcttctaaaaattacactagtccatgcatcgtggaagggcacaatgggtactacacatataatggagtatcttataaagctgcatcacgaaaacaaggtccaaatatcagaagatgtaaagcaataattagaaaattgcttcagattgatgcaccttgcaatcacaaaaattgttcatttgctgggatttggaatggtggtggtggagctggaaccaaaaatctctatatctcttcatttttctatgattatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="56854" stop="55450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56804" g_stop="56802" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56553" g_stop="56351" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="206" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56350" i_stop="56233" i_length="118">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56232" g_stop="56141" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="298" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56140" i_stop="55958" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55957" g_stop="55750" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="506" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E241529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56804" e_stop="56802"/>
          <exon e_start="56553" e_stop="56351"/>
          <exon e_start="56232" e_stop="56141"/>
          <exon e_start="55957" e_stop="55750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTAAGTTTAATCATCAAACGTTCTTAATTAACTTCACAAAACAAATAATTTTGTGATTTTTCTCTTATAATTTGGTAAATTACATTTGGTGTTTATACATCGAAACTAAACAATTAAAAAGCCTATTCTTGGTTGAGTTTGTTGTACGAGACTTGCCTAATACAATATACTTTTTGACTATGATTTATTCATTTGCAATCAATTATTAAAATTAGAATGACTTTATTTTTTTCTTAAAAAAAATGCAGGTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAGGTTTCATTTCTATTATTATTATATATATTTATTTTATAGTATGCATTAATGTTTTCTAATCAATAAATTTTATTTAATTTCTCAAAATCATAATTAATTAACAACTTTATTGTTGTAGTTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATGGTACTTTCCTTTAACAAATACTTGAGCTGATATCTTTTTTTTATACCCTCTCTAGCAACTCCCACCCCCATTGCTCCTTTGGTGACTCGAACTCGAAAAAGATGCTTACCATCTGAGGAACTCCCTCTCGTCGTCTGTTGTTATTCCTTAATAAAATAGTTACAATTTTTTTTTCCCTTGAAGGGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTGGTGGTGGAGCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTATGATTATGC</genome_strand>
        <mrna_strand>TGG........................................................................................................................................................................................................................................................GTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAG......................................................................................................................TTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATG.......................................................................................................................................................................................GGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTGGTGGTGGAGCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTATGATTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244517" ref_strand="+" ref_description="SGN-E244517 [cLED-38-K5]">
      <seq>gtgattcatctgaaaagattctgcaagcagtaagagatatgctgaaaaatgaaactactctgagttacaaggatgaatgggtctctgttctcgaaggaactctagaaggttcttatttttgggttgctttgaactatttgtatgggaatttgggcaaaaattacccagacaccattgctacaattgatcttggaggtggatcagttcaaattgcttatgctgtctcaaaacaaagtgctataaatgctccaaagttaccaaatggagacgcttatgtccaacaaaaagcacttcttggaactaattattacctctatgttcacagttttctaaattatggactattagcagctcgagctgatatcttgaaggcttctaaaaattacactagtccatgcatcgtggaagggcacaatgggtactacacatataatggagtatcttataaagctgcatcacgaaaacaaggtccaaatatcagaagatgtaaagcaataattagaaaattgcttcagattgatgcaccttgcaatcacaaaaattgttcatttgctgggatttggaatggtggtggtggagctggaaccaaaaatctctatatctcttcatttttctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="57363" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57063" g_stop="57035" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57034" i_stop="56895" i_length="140">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56894" g_stop="56802" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="122" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56351" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="325" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56350" i_stop="56233" i_length="118">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56232" g_stop="56141" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="417" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56140" i_stop="55958" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55957" g_stop="55758" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="617" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E244517" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57063" e_stop="57035"/>
          <exon e_start="56894" e_stop="56802"/>
          <exon e_start="56553" e_stop="56351"/>
          <exon e_start="56232" e_stop="56141"/>
          <exon e_start="55957" e_stop="55758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTCATCTGAAAAGATTCTGCAAGCAGTACATTTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGGGTAAGTTTAATCATCAAACGTTCTTAATTAACTTCACAAAACAAATAATTTTGTGATTTTTCTCTTATAATTTGGTAAATTACATTTGGTGTTTATACATCGAAACTAAACAATTAAAAAGCCTATTCTTGGTTGAGTTTGTTGTACGAGACTTGCCTAATACAATATACTTTTTGACTATGATTTATTCATTTGCAATCAATTATTAAAATTAGAATGACTTTATTTTTTTCTTAAAAAAAATGCAGGTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAGGTTTCATTTCTATTATTATTATATATATTTATTTTATAGTATGCATTAATGTTTTCTAATCAATAAATTTTATTTAATTTCTCAAAATCATAATTAATTAACAACTTTATTGTTGTAGTTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATGGTACTTTCCTTTAACAAATACTTGAGCTGATATCTTTTTTTTATACCCTCTCTAGCAACTCCCACCCCCATTGCTCCTTTGGTGACTCGAACTCGAAAAAGATGCTTACCATCTGAGGAACTCCCTCTCGTCGTCTGTTGTTATTCCTTAATAAAATAGTTACAATTTTTTTTTCCCTTGAAGGGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTGGTGGTGGAGCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTAT</genome_strand>
        <mrna_strand>GTGATTCATCTGAAAAGATTCTGCAAGCA............................................................................................................................................GTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGG........................................................................................................................................................................................................................................................GTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAG......................................................................................................................TTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATG.......................................................................................................................................................................................GGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTGGTGGTGGAGCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239781" ref_strand="+" ref_description="SGN-E239781 [cLED-29-K3]">
      <seq>tttgaactatttgtatgggaatttgggcaaaaattacccagacaccattgctacaattgatcttggaggtggatcagttcaaattgcttatgctgtctcaaaacaaagtgctataaatgctccaaagttaccaaatggagacgcttatgtccaacaaaaagcacttcttggaactaattattacctctatgttcacagttttctaaattatggactattagcagctcgagctgatatcttgaaggcttctaaaaattacactagtccatgcatcgtggaagggcacaatgggtactacacatataatggagtatcttataaagctgcatcacgaaaacaaggtccaaatatcagaagatgtaaagcaataattagaaaattgcttcagattgatgcaccttgcaatcacaaaaattgttcatttgctgggatttggaatggtggtggtggagctggaaccaaaaatctctatatctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="56848" stop="55468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56548" g_stop="56351" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56350" i_stop="56233" i_length="118">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56232" g_stop="56141" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="290" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56140" i_stop="55958" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55957" g_stop="55768" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="480" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E239781" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56548" e_stop="56351"/>
          <exon e_start="56232" e_stop="56141"/>
          <exon e_start="55957" e_stop="55768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAGGTTTCATTTCTATTATTATTATATATATTTATTTTATAGTATGCATTAATGTTTTCTAATCAATAAATTTTATTTAATTTCTCAAAATCATAATTAATTAACAACTTTATTGTTGTAGTTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATGGTACTTTCCTTTAACAAATACTTGAGCTGATATCTTTTTTTTATACCCTCTCTAGCAACTCCCACCCCCATTGCTCCTTTGGTGACTCGAACTCGAAAAAGATGCTTACCATCTGAGGAACTCCCTCTCGTCGTCTGTTGTTATTCCTTAATAAAATAGTTACAATTTTTTTTTCCCTTGAAGGGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTGGTGGTGGAGCTGGAACCAAAAATCTCTATATCTCTTC</genome_strand>
        <mrna_strand>TTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAG......................................................................................................................TTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATG.......................................................................................................................................................................................GGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTGGTGGTGGAGCTGGAACCAAAAATCTCTATATCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318215" ref_strand="+" ref_description="SGN-E318215 [cTOA-29-J8]">
      <seq>aaagctgaagctgttattcctaagaatttacagtctcaaacccctattaaagttggggcaactgcagggctgaggttattaaagggtgattcatctgaaaagattctgcaagcagtaagagatatgctgaaaaatgaaactactctgagttacaaggatgaatgggtctctgttctcgaaggaactctagaaggttcttatttttgggttgctttgaactatttgtatgggaatttgggcaaaaattacccagacaccattgctacaattgatcttggaggtggatcagttcaaattgcttatgctgtctcaaaacaaagtgctataaatgctccaaagttaccaaatggagacgcttatgtccaacaaaaagcacttcttggaactaattattacctctatgttcacagttttctaaattatggactattagcagctcgagctgatatcttgaaggcttctaaaaattacactagtccatgcatcgtggaagggcacaatgggtactacacatataatggagtatcttataaagctgcatcacgaaaacaaggtccaaatatcagaagatgtaaagcaataattagaaaattgcttcagattgatgcaccttgcaatcacaaaaattgttcatttgctgggattttggaatggtggttggtggagctggaaccaaaaatctctatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="57586" stop="55474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57286" g_stop="57230" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57229" i_stop="57092" i_length="138">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57091" g_stop="57035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="114" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57034" i_stop="56895" i_length="140">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56894" g_stop="56802" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="207" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56553" g_stop="56351" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="410" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56350" i_stop="56233" i_length="118">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56232" g_stop="56141" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="502" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56140" i_stop="55958" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55957" g_stop="55774" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="688" r_length="186" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E318215" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57286" e_stop="57230"/>
          <exon e_start="57091" e_stop="57035"/>
          <exon e_start="56894" e_stop="56802"/>
          <exon e_start="56553" e_stop="56351"/>
          <exon e_start="56232" e_stop="56141"/>
          <exon e_start="55957" e_stop="55774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGGGTCAGTTAATAATTAACTATTTATATCACTCTTAATTCTGATTAAGATTCATAATTATATTATTCCATATGATTGAGGAAAAAAAAGTACTATTAATATTAATTAACATTATTCTTGCGCTAATCTTAATTGATACAGGCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCAGTACATTTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGGGTAAGTTTAATCATCAAACGTTCTTAATTAACTTCACAAAACAAATAATTTTGTGATTTTTCTCTTATAATTTGGTAAATTACATTTGGTGTTTATACATCGAAACTAAACAATTAAAAAGCCTATTCTTGGTTGAGTTTGTTGTACGAGACTTGCCTAATACAATATACTTTTTGACTATGATTTATTCATTTGCAATCAATTATTAAAATTAGAATGACTTTATTTTTTTCTTAAAAAAAATGCAGGTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAGGTTTCATTTCTATTATTATTATATATATTTATTTTATAGTATGCATTAATGTTTTCTAATCAATAAATTTTATTTAATTTCTCAAAATCATAATTAATTAACAACTTTATTGTTGTAGTTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATGGTACTTTCCTTTAACAAATACTTGAGCTGATATCTTTTTTTTATACCCTCTCTAGCAACTCCCACCCCCATTGCTCCTTTGGTGACTCGAACTCGAAAAAGATGCTTACCATCTGAGGAACTCCCTCTCGTCGTCTGTTGTTATTCCTTAATAAAATAGTTACAATTTTTTTTTCCCTTGAAGGGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGA-TTTGGAATGGTGG-TGGTGGAGCTGGAACCAAAAATCTCTATAT</genome_strand>
        <mrna_strand>AAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGG..........................................................................................................................................GCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCA............................................................................................................................................GTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGG........................................................................................................................................................................................................................................................GTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAG......................................................................................................................TTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATG.......................................................................................................................................................................................GGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTTGGAATGGTGGTTGGTGGAGCTGGAACCAAAAATCTCTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241155" ref_strand="+" ref_description="SGN-E241155 [cLED-26-P1]">
      <seq>ttaaagggtgattcatctgaaaagattctgcaagcagtaagagatatgctgaaaaatgaaactactctgagttacaaggatgaatgggtctctgttctcgaaggaactctagaaggttcttatttttgggttgctttgaactatttgtatgggaatttgggcaaaaattacccagacaccattgctacaattgatcttggaggtggatcagttcaaattgcttatgctgtctcaaaacaaagtgctataaatgctccaaagttaccaaatggagacgcttatgtccaacaaaaagcacttcttggaactaattattacctctatgttcacagttttctaaattatggactattagcagctcgagctgatatcttgaaggcttctaaaaattacactagtccatgcatcgtggaagggcacaatgggtactacacatataatggagtatcttataaagctgcatcacgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="57370" stop="55611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57070" g_stop="57035" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57034" i_stop="56895" i_length="140">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56894" g_stop="56802" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="129" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56351" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="332" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56350" i_stop="56233" i_length="118">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56232" g_stop="56141" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="424" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56140" i_stop="55958" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55957" g_stop="55911" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="471" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E241155" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57070" e_stop="57035"/>
          <exon e_start="56894" e_stop="56802"/>
          <exon e_start="56553" e_stop="56351"/>
          <exon e_start="56232" e_stop="56141"/>
          <exon e_start="55957" e_stop="55911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCAGTACATTTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGGGTAAGTTTAATCATCAAACGTTCTTAATTAACTTCACAAAACAAATAATTTTGTGATTTTTCTCTTATAATTTGGTAAATTACATTTGGTGTTTATACATCGAAACTAAACAATTAAAAAGCCTATTCTTGGTTGAGTTTGTTGTACGAGACTTGCCTAATACAATATACTTTTTGACTATGATTTATTCATTTGCAATCAATTATTAAAATTAGAATGACTTTATTTTTTTCTTAAAAAAAATGCAGGTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAGGTTTCATTTCTATTATTATTATATATATTTATTTTATAGTATGCATTAATGTTTTCTAATCAATAAATTTTATTTAATTTCTCAAAATCATAATTAATTAACAACTTTATTGTTGTAGTTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATGGTACTTTCCTTTAACAAATACTTGAGCTGATATCTTTTTTTTATACCCTCTCTAGCAACTCCCACCCCCATTGCTCCTTTGGTGACTCGAACTCGAAAAAGATGCTTACCATCTGAGGAACTCCCTCTCGTCGTCTGTTGTTATTCCTTAATAAAATAGTTACAATTTTTTTTTCCCTTGAAGGGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAA</genome_strand>
        <mrna_strand>TTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCA............................................................................................................................................GTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGG........................................................................................................................................................................................................................................................GTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAG......................................................................................................................TTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATG.......................................................................................................................................................................................GGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233467" ref_strand="+" ref_description="SGN-E233467 [cLED-9-F8]">
      <seq>gtgattcatctgaaaagattctgcaagcagtaagagatatgctgaaaaatgaaactactctgagttacaaggatgaatgggtctctgttctcgaaggaactctagaaggttcttatttttgggttgctttgaactatttgtatgggaatttgggcaaaaattacccagacaccattgctacaattgatcttggaggtggatcagttcaaattgcttatgctgtctcaaaacaaagtgctataaatgctccaaagttaccaaatggagacgcttatgtccaacaaaaagcacttcttggaactaattattacctctatgttcacagttttctaaattatggactattagcagctcgagctgatatcttgaaggcttctaaaaattacactagtccatgcatcgtggaagggcacaatgggtactacacatataatggagtatcttataaagctgcatcacgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="57363" stop="55613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57063" g_stop="57035" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57034" i_stop="56895" i_length="140">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56894" g_stop="56802" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="122" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56351" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="325" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56350" i_stop="56233" i_length="118">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56232" g_stop="56141" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="417" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56140" i_stop="55958" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55957" g_stop="55913" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="462" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E233467" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57063" e_stop="57035"/>
          <exon e_start="56894" e_stop="56802"/>
          <exon e_start="56553" e_stop="56351"/>
          <exon e_start="56232" e_stop="56141"/>
          <exon e_start="55957" e_stop="55913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTCATCTGAAAAGATTCTGCAAGCAGTACATTTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGGGTAAGTTTAATCATCAAACGTTCTTAATTAACTTCACAAAACAAATAATTTTGTGATTTTTCTCTTATAATTTGGTAAATTACATTTGGTGTTTATACATCGAAACTAAACAATTAAAAAGCCTATTCTTGGTTGAGTTTGTTGTACGAGACTTGCCTAATACAATATACTTTTTGACTATGATTTATTCATTTGCAATCAATTATTAAAATTAGAATGACTTTATTTTTTTCTTAAAAAAAATGCAGGTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAGGTTTCATTTCTATTATTATTATATATATTTATTTTATAGTATGCATTAATGTTTTCTAATCAATAAATTTTATTTAATTTCTCAAAATCATAATTAATTAACAACTTTATTGTTGTAGTTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATGGTACTTTCCTTTAACAAATACTTGAGCTGATATCTTTTTTTTATACCCTCTCTAGCAACTCCCACCCCCATTGCTCCTTTGGTGACTCGAACTCGAAAAAGATGCTTACCATCTGAGGAACTCCCTCTCGTCGTCTGTTGTTATTCCTTAATAAAATAGTTACAATTTTTTTTTCCCTTGAAGGGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAA</genome_strand>
        <mrna_strand>GTGATTCATCTGAAAAGATTCTGCAAGCA............................................................................................................................................GTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGG........................................................................................................................................................................................................................................................GTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAG......................................................................................................................TTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATG.......................................................................................................................................................................................GGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240499" ref_strand="+" ref_description="SGN-E240499 [cLED-21-F24]">
      <seq>tattaaagggtgattcatctgaaaagattctgcaagcagtaagagatatgctgaaaaatgaaactactctgagttacaaggatgaatgggtctctgttctcgaaggaactctagaaggttcttatttttgggttgctttgaactatttgtatgggaatttgggcaaaaattacccagacaccattgctacaattgatcttggaggtggatcagttcaaattgcttatgctgtctcaaaacaaagtgctataaatgctccaaagttaccaaatggagacgcttatgtccaacaaaaagcacttcttggaactaattattacctctatgttcacagttttctaaattatggactattagcagctcgagctgatatcttgaaggcttctaaaaattacactagtccatgcatcgtggaagggcacaatgggtactacacatataatggagtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="57372" stop="55633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57072" g_stop="57035" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57034" i_stop="56895" i_length="140">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56894" g_stop="56802" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="131" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56351" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="334" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56350" i_stop="56233" i_length="118">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56232" g_stop="56141" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="426" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56140" i_stop="55958" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55957" g_stop="55933" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="451" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E240499" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57072" e_stop="57035"/>
          <exon e_start="56894" e_stop="56802"/>
          <exon e_start="56553" e_stop="56351"/>
          <exon e_start="56232" e_stop="56141"/>
          <exon e_start="55957" e_stop="55933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCAGTACATTTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGGGTAAGTTTAATCATCAAACGTTCTTAATTAACTTCACAAAACAAATAATTTTGTGATTTTTCTCTTATAATTTGGTAAATTACATTTGGTGTTTATACATCGAAACTAAACAATTAAAAAGCCTATTCTTGGTTGAGTTTGTTGTACGAGACTTGCCTAATACAATATACTTTTTGACTATGATTTATTCATTTGCAATCAATTATTAAAATTAGAATGACTTTATTTTTTTCTTAAAAAAAATGCAGGTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAGGTTTCATTTCTATTATTATTATATATATTTATTTTATAGTATGCATTAATGTTTTCTAATCAATAAATTTTATTTAATTTCTCAAAATCATAATTAATTAACAACTTTATTGTTGTAGTTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATGGTACTTTCCTTTAACAAATACTTGAGCTGATATCTTTTTTTTATACCCTCTCTAGCAACTCCCACCCCCATTGCTCCTTTGGTGACTCGAACTCGAAAAAGATGCTTACCATCTGAGGAACTCCCTCTCGTCGTCTGTTGTTATTCCTTAATAAAATAGTTACAATTTTTTTTTCCCTTGAAGGGTACTACACATATAATGGAGTATC</genome_strand>
        <mrna_strand>TATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCA............................................................................................................................................GTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGG........................................................................................................................................................................................................................................................GTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAG......................................................................................................................TTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATG.......................................................................................................................................................................................GGTACTACACATATAATGGAGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549895" ref_strand="+" ref_description="SGN-E549895 [TUS-6-G21]">
      <seq>tttttttatcccttcttactttcactaattggaaaattaatcttaattattgtattatttgataatccttcatcgtacaaattaatctcactggtttaattattgttttttcttattataattccttgattaaggtaagagatatgctgaaaaatgaaactactctgagttacaaggatgaatgggtctctgttctcgaaggaactctagaaggttcttatttttgggttgctttgaactatttgtatgggaatttgggcaaaaattacccagacaccattgctacaattgatcttggaggtggatcagttcaaattgcttatgctgtctcaaaacaaagtgctataaatgctccaaagttaccaaatggagacgcttatgtccaacaaaaagcacttcttggaactaattattacctctatgttcacagttttctaaattatggactattagcagctcgagctgatatcttgaaggcttctaaaaattacactagtccatgcatcgtggaagggcacaatgggtacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="57328" stop="55836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57028" g_stop="56802" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56553" g_stop="56351" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="430" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56350" i_stop="56233" i_length="118">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56232" g_stop="56141" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="522" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56140" i_stop="55958" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55957" g_stop="55951" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="529" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E549895" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57028" e_stop="56802"/>
          <exon e_start="56553" e_stop="56351"/>
          <exon e_start="56232" e_stop="56141"/>
          <exon e_start="55957" e_stop="55951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGGGTAAGTTTAATCATCAAACGTTCTTAATTAACTTCACAAAACAAATAATTTTGTGATTTTTCTCTTATAATTTGGTAAATTACATTTGGTGTTTATACATCGAAACTAAACAATTAAAAAGCCTATTCTTGGTTGAGTTTGTTGTACGAGACTTGCCTAATACAATATACTTTTTGACTATGATTTATTCATTTGCAATCAATTATTAAAATTAGAATGACTTTATTTTTTTCTTAAAAAAAATGCAGGTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAGGTTTCATTTCTATTATTATTATATATATTTATTTTATAGTATGCATTAATGTTTTCTAATCAATAAATTTTATTTAATTTCTCAAAATCATAATTAATTAACAACTTTATTGTTGTAGTTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATGGTACTTTCCTTTAACAAATACTTGAGCTGATATCTTTTTTTTATACCCTCTCTAGCAACTCCCACCCCCATTGCTCCTTTGGTGACTCGAACTCGAAAAAGATGCTTACCATCTGAGGAACTCCCTCTCGTCGTCTGTTGTTATTCCTTAATAAAATAGTTACAATTTTTTTTTCCCTTGAAGGGTACTA</genome_strand>
        <mrna_strand>TTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGG........................................................................................................................................................................................................................................................GTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAG......................................................................................................................TTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATG.......................................................................................................................................................................................GGTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242093" ref_strand="+" ref_description="SGN-E242093 [cLED-37-K11]">
      <seq>gtgattcatctgaaaagattctgcaagcagtaagagatatgctgaaaaatgaaactactctgagttacaaggatgaatgggtctctgttctcgaaggaactctagaaggttcttatttttgggttgctttgaactatttgtatgggaatttgggcaaaaattacccagacaccattgctacaattgatcttggaggtggatcagttcaaattgcttatgctgtctcaaaacaaagtgctataaatgctccaaagttaccaaatggagacgcttatgtccaacaaaaagcacttcttggaactaattattacctctatgttcacagttttctaaattatggactattagcagctcgagctgatatcttgaaggcttctaaaaattacactagtccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="57363" stop="55861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57063" g_stop="57035" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57034" i_stop="56895" i_length="140">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56894" g_stop="56802" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="122" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56351" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="325" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56350" i_stop="56233" i_length="118">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56232" g_stop="56161" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="397" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E242093" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57063" e_stop="57035"/>
          <exon e_start="56894" e_stop="56802"/>
          <exon e_start="56553" e_stop="56351"/>
          <exon e_start="56232" e_stop="56161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTCATCTGAAAAGATTCTGCAAGCAGTACATTTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGGGTAAGTTTAATCATCAAACGTTCTTAATTAACTTCACAAAACAAATAATTTTGTGATTTTTCTCTTATAATTTGGTAAATTACATTTGGTGTTTATACATCGAAACTAAACAATTAAAAAGCCTATTCTTGGTTGAGTTTGTTGTACGAGACTTGCCTAATACAATATACTTTTTGACTATGATTTATTCATTTGCAATCAATTATTAAAATTAGAATGACTTTATTTTTTTCTTAAAAAAAATGCAGGTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAGGTTTCATTTCTATTATTATTATATATATTTATTTTATAGTATGCATTAATGTTTTCTAATCAATAAATTTTATTTAATTTCTCAAAATCATAATTAATTAACAACTTTATTGTTGTAGTTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATG</genome_strand>
        <mrna_strand>GTGATTCATCTGAAAAGATTCTGCAAGCA............................................................................................................................................GTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGG........................................................................................................................................................................................................................................................GTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAG......................................................................................................................TTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317236" ref_strand="+" ref_description="SGN-E317236 [cTOA-28-M14]">
      <seq>ttgagctcgcatgccaatgattattcggagaaatatgcagtgatatttgacgctggaagcactggtagcagagttcatgtctttcgttttaactcaaatttggatctcatcaatatcggcaatgatcttgaactcttcttggcgataaaaccaggtctgagttcatatgcagatgatccaaaggcagctgcaaattctctaaagccccttcttgagaaagctgaagctgttattcctaagaatttacagtctcaaacccctattaaagttggggcaactgcagggctgaggttattaaagggtgattcatctgaaaagattctgcaagcagtaagagatatgctgaaaaatgaaactactctgagttacaaggatgaatgggtctctgttctcgaaggaactctagaaggttcttatttttgggttgctttgaactatttgtatgggaatttgggcaaaaattacccagacaccattgctacaattgatcttggaggtggatcagttcaaattgcttatgctgtctcaaaacaaagtgctataaatgctccaaagttaccaaatggagacgcttatgtccaacaaaaagcacttcttggaactaattattacctctatgttcacagttttctaaattatggactattagcagctcgagctgatatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="58996" stop="55891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58696" g_stop="58553" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58552" i_stop="57359" i_length="1194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57358" g_stop="57230" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="273" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57229" i_stop="57092" i_length="138">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57091" g_stop="57035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="330" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57034" i_stop="56895" i_length="140">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56894" g_stop="56802" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="423" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56553" g_stop="56351" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="626" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56350" i_stop="56233" i_length="118">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56232" g_stop="56191" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="668" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E317236" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58696" e_stop="58553"/>
          <exon e_start="57358" e_stop="57230"/>
          <exon e_start="57091" e_stop="57035"/>
          <exon e_start="56894" e_stop="56802"/>
          <exon e_start="56553" e_stop="56351"/>
          <exon e_start="56232" e_stop="56191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGCTCGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCGGTACCTACTTAATACAACACTACTACACTTTTTAGCTACAGTATGCCTTGTTTTATTTTGACTTCATATAAAGAAATTAAAAAAAAAAAAGACTTTGAGGGTACATTTGGTAGAGAGGAAAATATTTTTTAAAAATAAACTTAAACTTATTTTCTTTTAGGATAAGAGTGGTAGCGGGTAAGTGGGAGAACGATGATACGGTGAAAAAAAAATTAAAATTTTGAAGTTGAAAATATTTTTTAAAAAGTAATTTTTTTTTTTTAGGGATAGAGGGTGGGGGCTGGTAGTTTCATTTTGTTGTCTTAATACCCTTACCCCTTCTGTTGACACTGATTCTTGTGGATCCATTTGGTTTCGAACCTCATCATTATTCGATTCACTCCTGTTTTTCTGGACCATTTTTTTTCCTTTTGATCTTGTATTGTAGGAATGAGATGTCAGCTTAAGCACAAATCAACCACCTTAATTTAAATGTTGGTAGAGGGTGGGTTGGGGACTGATAAGGTGTGGTGGGTAGGGAGAGGTTAGAAGGGAGTTTTGAAAACATTTTTCTTAAGTTTTTTTTGAAGGGAGTCATTTTTTTTAAATTTTAAAAAAAATAAGTTAATTTGAAAAACATTTAACCAATCAACCTTTTTCATTTTCCTTCCTACCAATCACGCCCTGAATGTTGTAAACTTTGTAGTCATACATTTGTTGTGCTAATAAGAGAAATAGACATTCTTGTTAGAATCCTAGGATAACCTATATCCGCTACAATTTTTGCTCCCGTCTTTTCCCTTTGAGTGAGAACTCTGTGATGAGTATCTTGTTTGCACTGAGTAAACCTGCAACAGTGTAACCTCTGCCTGTCTGGCCCAGCCCATATGGATAAGCATTCTATGGTGAGCATTTTGTGCGCATTAGGTAAATCCCTATTGTGTAATAATCTGTATATTACGGTATAAATATGTAAGCTGCATTGGCAAGACCTATGTAACAGACTCAACTCAGATATTGAGGAGGCATCGATTTCGAATCATACGTGTGGATAACCACCCTCCAAATCAATTGAATGGACAAATAAACCTTTTTCGTAAAACAAATTAAATAGGAAAATATAATAAACGAATCGAATAGAATGAACTAGTAGTAATTTTGCACTGTTATTACCAAAGATCTAGTTATAAGTGAGTTTTCTTTTTACCTTTGCAGATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGGGTCAGTTAATAATTAACTATTTATATCACTCTTAATTCTGATTAAGATTCATAATTATATTATTCCATATGATTGAGGAAAAAAAAGTACTATTAATATTAATTAACATTATTCTTGCGCTAATCTTAATTGATACAGGCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCAGTACATTTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGGGTAAGTTTAATCATCAAACGTTCTTAATTAACTTCACAAAACAAATAATTTTGTGATTTTTCTCTTATAATTTGGTAAATTACATTTGGTGTTTATACATCGAAACTAAACAATTAAAAAGCCTATTCTTGGTTGAGTTTGTTGTACGAGACTTGCCTAATACAATATACTTTTTGACTATGATTTATTCATTTGCAATCAATTATTAAAATTAGAATGACTTTATTTTTTTCTTAAAAAAAATGCAGGTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAGGTTTCATTTCTATTATTATTATATATATTTATTTTATAGTATGCATTAATGTTTTCTAATCAATAAATTTTATTTAATTTCTCAAAATCATAATTAATTAACAACTTTATTGTTGTAGTTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTT</genome_strand>
        <mrna_strand>TTGAGCTCGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGG..........................................................................................................................................GCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCA............................................................................................................................................GTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGG........................................................................................................................................................................................................................................................GTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAG......................................................................................................................TTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316931" ref_strand="+" ref_description="SGN-E316931 [cTOA-27-J5]">
      <seq>tttataacttgttcaacattatgttgttgatacttgttgggttgccattgagctcgcatgccaatgattattcggagaaatatgcagtgatatttgacgctggaagcactggtagcagagttcatgtctttcgttttaactcaaatttggatctcatcaatatcggcaatgatcttgaactcttcttggcgataaaaccaggtctgagttcatatgcagatgatccaaaggcagctgcaaattctctaaagccccttcttgagaaagctgaagctgttattcctaagaatttacagtctcaaacccctattaaagttggggcaactgcagggctgaggttattaaagggtgattcatctgaaaagattctgcgagcagtaagagatatgctgaaaaatgaaactactctgagttacaaggatgaatgggtctctgttctctaaggaactctataaagggcttatttttgggttgctttgaactatttgtatgggaatttgggcgaaaattacccacacaccattgctacaattgatcttggaggtggatcagatcaaattgcttatgctgtctcacaacaaagtgctatatatgctccacagttaccacatggagacgcttatgtccaacaaaaagcacttcttgggactaattattacctctatgtgcacagntttctaaattatggactattagcagctcgagctgatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="59043" stop="55893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58743" g_stop="58553" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58552" i_stop="57359" i_length="1194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57358" g_stop="57230" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="320" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57229" i_stop="57092" i_length="138">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57091" g_stop="57035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="377" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57034" i_stop="56895" i_length="140">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56894" g_stop="56802" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="470" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56553" g_stop="56351" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="673" r_length="203" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56350" i_stop="56233" i_length="118">
            <donor d_prob="0.887" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56232" g_stop="56193" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="713" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E316931" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58743" e_stop="58553"/>
          <exon e_start="57358" e_stop="57230"/>
          <exon e_start="57091" e_stop="57035"/>
          <exon e_start="56894" e_stop="56802"/>
          <exon e_start="56553" e_stop="56351"/>
          <exon e_start="56232" e_stop="56193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAACTTGTTCAACATTATGTTGTTGATACTTGTTGGGTTGCCATTGAGCTCGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCGGTACCTACTTAATACAACACTACTACACTTTTTAGCTACAGTATGCCTTGTTTTATTTTGACTTCATATAAAGAAATTAAAAAAAAAAAAGACTTTGAGGGTACATTTGGTAGAGAGGAAAATATTTTTTAAAAATAAACTTAAACTTATTTTCTTTTAGGATAAGAGTGGTAGCGGGTAAGTGGGAGAACGATGATACGGTGAAAAAAAAATTAAAATTTTGAAGTTGAAAATATTTTTTAAAAAGTAATTTTTTTTTTTTAGGGATAGAGGGTGGGGGCTGGTAGTTTCATTTTGTTGTCTTAATACCCTTACCCCTTCTGTTGACACTGATTCTTGTGGATCCATTTGGTTTCGAACCTCATCATTATTCGATTCACTCCTGTTTTTCTGGACCATTTTTTTTCCTTTTGATCTTGTATTGTAGGAATGAGATGTCAGCTTAAGCACAAATCAACCACCTTAATTTAAATGTTGGTAGAGGGTGGGTTGGGGACTGATAAGGTGTGGTGGGTAGGGAGAGGTTAGAAGGGAGTTTTGAAAACATTTTTCTTAAGTTTTTTTTGAAGGGAGTCATTTTTTTTAAATTTTAAAAAAAATAAGTTAATTTGAAAAACATTTAACCAATCAACCTTTTTCATTTTCCTTCCTACCAATCACGCCCTGAATGTTGTAAACTTTGTAGTCATACATTTGTTGTGCTAATAAGAGAAATAGACATTCTTGTTAGAATCCTAGGATAACCTATATCCGCTACAATTTTTGCTCCCGTCTTTTCCCTTTGAGTGAGAACTCTGTGATGAGTATCTTGTTTGCACTGAGTAAACCTGCAACAGTGTAACCTCTGCCTGTCTGGCCCAGCCCATATGGATAAGCATTCTATGGTGAGCATTTTGTGCGCATTAGGTAAATCCCTATTGTGTAATAATCTGTATATTACGGTATAAATATGTAAGCTGCATTGGCAAGACCTATGTAACAGACTCAACTCAGATATTGAGGAGGCATCGATTTCGAATCATACGTGTGGATAACCACCCTCCAAATCAATTGAATGGACAAATAAACCTTTTTCGTAAAACAAATTAAATAGGAAAATATAATAAACGAATCGAATAGAATGAACTAGTAGTAATTTTGCACTGTTATTACCAAAGATCTAGTTATAAGTGAGTTTTCTTTTTACCTTTGCAGATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGGGTCAGTTAATAATTAACTATTTATATCACTCTTAATTCTGATTAAGATTCATAATTATATTATTCCATATGATTGAGGAAAAAAAAGTACTATTAATATTAATTAACATTATTCTTGCGCTAATCTTAATTGATACAGGCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCAGTACATTTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGGGTAAGTTTAATCATCAAACGTTCTTAATTAACTTCACAAAACAAATAATTTTGTGATTTTTCTCTTATAATTTGGTAAATTACATTTGGTGTTTATACATCGAAACTAAACAATTAAAAAGCCTATTCTTGGTTGAGTTTGTTGTACGAGACTTGCCTAATACAATATACTTTTTGACTATGATTTATTCATTTGCAATCAATTATTAAAATTAGAATGACTTTATTTTTTTCTTAAAAAAAATGCAGGTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAGGTTTCATTTCTATTATTATTATATATATTTATTTTATAGTATGCATTAATGTTTTCTAATCAATAAATTTTATTTAATTTCTCAAAATCATAATTAATTAACAACTTTATTGTTGTAGTTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATC</genome_strand>
        <mrna_strand>TTTATAACTTGTTCAACATTATGTTGTTGATACTTGTTGGGTTGCCATTGAGCTCGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGG..........................................................................................................................................GCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCGAGCA............................................................................................................................................GTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCTAAGGAACTCTATAAAGGGCTTATTTTTGG........................................................................................................................................................................................................................................................GTTGCTTTGAACTATTTGTATGGGAATTTGGGCGAAAATTACCCACACACCATTGCTACAATTGATCTTGGAGGTGGATCAGATCAAATTGCTTATGCTGTCTCACAACAAAGTGCTATATATGCTCCACAGTTACCACATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGGACTAATTATTACCTCTATGTGCACAG......................................................................................................................NTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236240" ref_strand="+" ref_description="SGN-E236240 [cLED-20-N5]">
      <seq>tattaaagggtgattcatctgaaaagattctgcaagcagtaagagatatgctgaaaaatgaaactactctgagttacaaggatgaatgggtctctgttctcgaaggaactctagaaggttcttatttttgggttgctttgaactatttgtatgggaatttgggcaaaaattacccagacaccattgctacaattgatcttggaggtggatcagttcaaattgcttatgctgtctcaaaacaaagtgctataaatgctccaaagttaccaaatggagacgcttatgtccaacaaaaagcactttttggaactaattattacctctatgttcacagttttctaaattatggactattagcagctcgagctgatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="57372" stop="55893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57072" g_stop="57035" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57034" i_stop="56895" i_length="140">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56894" g_stop="56802" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="131" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56351" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="334" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56350" i_stop="56233" i_length="118">
            <donor d_prob="0.887" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56232" g_stop="56193" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="374" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E236240" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57072" e_stop="57035"/>
          <exon e_start="56894" e_stop="56802"/>
          <exon e_start="56553" e_stop="56351"/>
          <exon e_start="56232" e_stop="56193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCAGTACATTTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGGGTAAGTTTAATCATCAAACGTTCTTAATTAACTTCACAAAACAAATAATTTTGTGATTTTTCTCTTATAATTTGGTAAATTACATTTGGTGTTTATACATCGAAACTAAACAATTAAAAAGCCTATTCTTGGTTGAGTTTGTTGTACGAGACTTGCCTAATACAATATACTTTTTGACTATGATTTATTCATTTGCAATCAATTATTAAAATTAGAATGACTTTATTTTTTTCTTAAAAAAAATGCAGGTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAGGTTTCATTTCTATTATTATTATATATATTTATTTTATAGTATGCATTAATGTTTTCTAATCAATAAATTTTATTTAATTTCTCAAAATCATAATTAATTAACAACTTTATTGTTGTAGTTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATC</genome_strand>
        <mrna_strand>TATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCA............................................................................................................................................GTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGG........................................................................................................................................................................................................................................................GTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTTTTGGAACTAATTATTACCTCTATGTTCACAG......................................................................................................................TTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315772" ref_strand="+" ref_description="SGN-E315772 [cTOA-26-F17]">
      <seq>aatgcagaagcataatattagtaatgtttataacttgttcaacattatgttgttgatacttgttgggttgccattgagctcgcatgccaatgattattcggagaaatatgcagtgatatttgacgctggaagcactggtagcagagttcatgtctttcgttttaactcaaatttggatctcatcaatatcggcaatgatcttgaactcttcttggcgataaaaccaggtctgagttcatatgcagatgatccaaaggcagctgcaaattctctaaagccccttcttgagaaagctgaagctgttattcctaagaatttacagtctcaaacccctattaaagttggggcaactgcagggctgaggttattaaagggtgattcatctgaaaagattctgcaagcagtaagagatatgctgaaaaatgaaactactctgagttacaaggatgaatgggtctctgttctcgaaggaactctagaaggttcttatttttgggttgctttgaactatttgtatgggaatttgggcaaaaattacccagacaccattgctacaattgatcttggaggtggatcagttcaaattgcttatgctgtctcaaaacaaagtgctataaatgctccaaagttaccaaatggagacgcttatgtcccacaaaaagcacttcttggaactaattattacctctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="59069" stop="56059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58769" g_stop="58553" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58552" i_stop="57359" i_length="1194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57358" g_stop="57230" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="346" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57229" i_stop="57092" i_length="138">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57091" g_stop="57035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="403" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57034" i_stop="56895" i_length="140">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56894" g_stop="56802" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="496" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56553" g_stop="56359" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="691" r_length="195" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E315772" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58769" e_stop="58553"/>
          <exon e_start="57358" e_stop="57230"/>
          <exon e_start="57091" e_stop="57035"/>
          <exon e_start="56894" e_stop="56802"/>
          <exon e_start="56553" e_stop="56359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCAGAAGCATAATATTAGTAATGTTTATAACTTGTTCAACATTATGTTGTTGATACTTGTTGGGTTGCCATTGAGCTCGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCGGTACCTACTTAATACAACACTACTACACTTTTTAGCTACAGTATGCCTTGTTTTATTTTGACTTCATATAAAGAAATTAAAAAAAAAAAAGACTTTGAGGGTACATTTGGTAGAGAGGAAAATATTTTTTAAAAATAAACTTAAACTTATTTTCTTTTAGGATAAGAGTGGTAGCGGGTAAGTGGGAGAACGATGATACGGTGAAAAAAAAATTAAAATTTTGAAGTTGAAAATATTTTTTAAAAAGTAATTTTTTTTTTTTAGGGATAGAGGGTGGGGGCTGGTAGTTTCATTTTGTTGTCTTAATACCCTTACCCCTTCTGTTGACACTGATTCTTGTGGATCCATTTGGTTTCGAACCTCATCATTATTCGATTCACTCCTGTTTTTCTGGACCATTTTTTTTCCTTTTGATCTTGTATTGTAGGAATGAGATGTCAGCTTAAGCACAAATCAACCACCTTAATTTAAATGTTGGTAGAGGGTGGGTTGGGGACTGATAAGGTGTGGTGGGTAGGGAGAGGTTAGAAGGGAGTTTTGAAAACATTTTTCTTAAGTTTTTTTTGAAGGGAGTCATTTTTTTTAAATTTTAAAAAAAATAAGTTAATTTGAAAAACATTTAACCAATCAACCTTTTTCATTTTCCTTCCTACCAATCACGCCCTGAATGTTGTAAACTTTGTAGTCATACATTTGTTGTGCTAATAAGAGAAATAGACATTCTTGTTAGAATCCTAGGATAACCTATATCCGCTACAATTTTTGCTCCCGTCTTTTCCCTTTGAGTGAGAACTCTGTGATGAGTATCTTGTTTGCACTGAGTAAACCTGCAACAGTGTAACCTCTGCCTGTCTGGCCCAGCCCATATGGATAAGCATTCTATGGTGAGCATTTTGTGCGCATTAGGTAAATCCCTATTGTGTAATAATCTGTATATTACGGTATAAATATGTAAGCTGCATTGGCAAGACCTATGTAACAGACTCAACTCAGATATTGAGGAGGCATCGATTTCGAATCATACGTGTGGATAACCACCCTCCAAATCAATTGAATGGACAAATAAACCTTTTTCGTAAAACAAATTAAATAGGAAAATATAATAAACGAATCGAATAGAATGAACTAGTAGTAATTTTGCACTGTTATTACCAAAGATCTAGTTATAAGTGAGTTTTCTTTTTACCTTTGCAGATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGGGTCAGTTAATAATTAACTATTTATATCACTCTTAATTCTGATTAAGATTCATAATTATATTATTCCATATGATTGAGGAAAAAAAAGTACTATTAATATTAATTAACATTATTCTTGCGCTAATCTTAATTGATACAGGCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCAGTACATTTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGGGTAAGTTTAATCATCAAACGTTCTTAATTAACTTCACAAAACAAATAATTTTGTGATTTTTCTCTTATAATTTGGTAAATTACATTTGGTGTTTATACATCGAAACTAAACAATTAAAAAGCCTATTCTTGGTTGAGTTTGTTGTACGAGACTTGCCTAATACAATATACTTTTTGACTATGATTTATTCATTTGCAATCAATTATTAAAATTAGAATGACTTTATTTTTTTCTTAAAAAAAATGCAGGTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTAT</genome_strand>
        <mrna_strand>AATGCAGAAGCATAATATTAGTAATGTTTATAACTTGTTCAACATTATGTTGTTGATACTTGTTGGGTTGCCATTGAGCTCGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGG..........................................................................................................................................GCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCA............................................................................................................................................GTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGG........................................................................................................................................................................................................................................................GTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCCACAAAAAGCACTTCTTGGAACTAATTATTACCTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344771" ref_strand="+" ref_description="SGN-E344771 [cTOF-21-P17]">
      <seq>ttttaaatcaacattaattgctttcatttttgtgcagagatcgaaaatgcagaagcataatattagtaatgtttataacttgttcaacattatgttgttgatacttgttgggttgccattgagctcgcatgccaatgattattcggagaaatatgcagtgatatttgacgctggaagcactggtagcagagttcatgtctttcgttttaactcaaatttggatctcatcaatatcggcaatgatcttgaactcttcttggcgataaaaccaggtctgagttcatatgcagatgatccaaaggcagctgcaaattctctaaagccccttcttgagaaagctgaagctgttattcctaagaatttacagtctcaaacccctattaaagttggggcaactgcagggctgaggttattaaagggtgattcatctgaaaagattctgcaagcagtaagagatatgctgaaaaatgaaactactctgagttacaaggatgaatgggntctctgttctcgaaggaactctagaaggttcttattttttgggttgctttgaactatttgtatggggaatttgggcaaaaattacccagacaccattgctacaattgatcttggagggtgggatcagttcanattgcttatgctgtctcaaaacaaagtgctataaatgctccaaagttaccaaatggagacgcttatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="59115" stop="56098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58815" g_stop="58553" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58552" i_stop="57359" i_length="1194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57358" g_stop="57230" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="391" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57229" i_stop="57092" i_length="138">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57091" g_stop="57035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="448" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57034" i_stop="56895" i_length="140">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56894" g_stop="56802" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="543" r_length="95" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56553" g_stop="56398" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="702" r_length="159" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E344771" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58815" e_stop="58553"/>
          <exon e_start="57358" e_stop="57230"/>
          <exon e_start="57091" e_stop="57035"/>
          <exon e_start="56894" e_stop="56802"/>
          <exon e_start="56553" e_stop="56398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAATCAAACATTAATTGCTTTCATTTTTGTGCAGAGATCGAAAATGCAGAAGCATAATATTAGTAATGTTTATAACTTGTTCAACATTATGTTGTTGATACTTGTTGGGTTGCCATTGAGCTCGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCGGTACCTACTTAATACAACACTACTACACTTTTTAGCTACAGTATGCCTTGTTTTATTTTGACTTCATATAAAGAAATTAAAAAAAAAAAAGACTTTGAGGGTACATTTGGTAGAGAGGAAAATATTTTTTAAAAATAAACTTAAACTTATTTTCTTTTAGGATAAGAGTGGTAGCGGGTAAGTGGGAGAACGATGATACGGTGAAAAAAAAATTAAAATTTTGAAGTTGAAAATATTTTTTAAAAAGTAATTTTTTTTTTTTAGGGATAGAGGGTGGGGGCTGGTAGTTTCATTTTGTTGTCTTAATACCCTTACCCCTTCTGTTGACACTGATTCTTGTGGATCCATTTGGTTTCGAACCTCATCATTATTCGATTCACTCCTGTTTTTCTGGACCATTTTTTTTCCTTTTGATCTTGTATTGTAGGAATGAGATGTCAGCTTAAGCACAAATCAACCACCTTAATTTAAATGTTGGTAGAGGGTGGGTTGGGGACTGATAAGGTGTGGTGGGTAGGGAGAGGTTAGAAGGGAGTTTTGAAAACATTTTTCTTAAGTTTTTTTTGAAGGGAGTCATTTTTTTTAAATTTTAAAAAAAATAAGTTAATTTGAAAAACATTTAACCAATCAACCTTTTTCATTTTCCTTCCTACCAATCACGCCCTGAATGTTGTAAACTTTGTAGTCATACATTTGTTGTGCTAATAAGAGAAATAGACATTCTTGTTAGAATCCTAGGATAACCTATATCCGCTACAATTTTTGCTCCCGTCTTTTCCCTTTGAGTGAGAACTCTGTGATGAGTATCTTGTTTGCACTGAGTAAACCTGCAACAGTGTAACCTCTGCCTGTCTGGCCCAGCCCATATGGATAAGCATTCTATGGTGAGCATTTTGTGCGCATTAGGTAAATCCCTATTGTGTAATAATCTGTATATTACGGTATAAATATGTAAGCTGCATTGGCAAGACCTATGTAACAGACTCAACTCAGATATTGAGGAGGCATCGATTTCGAATCATACGTGTGGATAACCACCCTCCAAATCAATTGAATGGACAAATAAACCTTTTTCGTAAAACAAATTAAATAGGAAAATATAATAAACGAATCGAATAGAATGAACTAGTAGTAATTTTGCACTGTTATTACCAAAGATCTAGTTATAAGTGAGTTTTCTTTTTACCTTTGCAGATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGGGTCAGTTAATAATTAACTATTTATATCACTCTTAATTCTGATTAAGATTCATAATTATATTATTCCATATGATTGAGGAAAAAAAAGTACTATTAATATTAATTAACATTATTCTTGCGCTAATCTTAATTGATACAGGCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCAGTACATTTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGG-TCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTA-TTTTTGGGTAAGTTTAATCATCAAACGTTCTTAATTAACTTCACAAAACAAATAATTTTGTGATTTTTCTCTTATAATTTGGTAAATTACATTTGGTGTTTATACATCGAAACTAAACAATTAAAAAGCCTATTCTTGGTTGAGTTTGTTGTACGAGACTTGCCTAATACAATATACTTTTTGACTATGATTTATTCATTTGCAATCAATTATTAAAATTAGAATGACTTTATTTTTTTCTTAAAAAAAATGCAGGTTGCTTTGAACTATTTGTAT-GGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGA-GGTGG-ATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTC</genome_strand>
        <mrna_strand>TTTTAAATC-AACATTAATTGCTTTCATTTTTGTGCAGAGATCGAAAATGCAGAAGCATAATATTAGTAATGTTTATAACTTGTTCAACATTATGTTGTTGATACTTGTTGGGTTGCCATTGAGCTCGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGG..........................................................................................................................................GCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCA............................................................................................................................................GTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGNTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTTGG........................................................................................................................................................................................................................................................GTTGCTTTGAACTATTTGTATGGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGGTGGGATCAGTTCANATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236203" ref_strand="+" ref_description="SGN-E236203 [cLED-20-B21]">
      <seq>gtgattcatctgaaaagattctgcaagcagtaagagatatgctgaaaaatgaaactactctgagttacaaggatgaatgggtctctgttctcgaaggaactctagaaggttcttatttttgggttgctttgaactatttgtatgggaatttgggcaaaaattacccagacaccattgctacaattgatcttggaggtggatcagatcaaattgcttatgctgtctcaaaacaaagtgctataaatgctccaaagttaccaaatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="57363" stop="56109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57063" g_stop="57035" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57034" i_stop="56895" i_length="140">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56894" g_stop="56802" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="122" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56409" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="267" r_length="145" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E236203" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57063" e_stop="57035"/>
          <exon e_start="56894" e_stop="56802"/>
          <exon e_start="56553" e_stop="56409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTCATCTGAAAAGATTCTGCAAGCAGTACATTTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGGGTAAGTTTAATCATCAAACGTTCTTAATTAACTTCACAAAACAAATAATTTTGTGATTTTTCTCTTATAATTTGGTAAATTACATTTGGTGTTTATACATCGAAACTAAACAATTAAAAAGCCTATTCTTGGTTGAGTTTGTTGTACGAGACTTGCCTAATACAATATACTTTTTGACTATGATTTATTCATTTGCAATCAATTATTAAAATTAGAATGACTTTATTTTTTTCTTAAAAAAAATGCAGGTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAG</genome_strand>
        <mrna_strand>GTGATTCATCTGAAAAGATTCTGCAAGCA............................................................................................................................................GTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGG........................................................................................................................................................................................................................................................GTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGATCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243823" ref_strand="+" ref_description="SGN-E243823 [cLED-35-A3]">
      <seq>ttaaagggtgattcatctgaaaagattctgcaagcagtacattttttttatcccttcttactttcactaattggaaaattaatcttaattattgtattatttgataatccttcatcgtacaaattaatctcactggtttaattattgttttttcttattataattccttgattaaggtaagagatatgctgaaaaatgaaactactctgagttacaaggatgaatgggtctctgttctcgaaggaactctagaaggatcttatttttgggttgctttgaactatttgtatgggaatttgggcaaaaattacccagacaccattgctacaattgatcttggaggtggatcagttcaaattgcttatgctgtctcaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="57370" stop="56145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57070" g_stop="56802" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56553" g_stop="56445" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="378" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E243823" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57070" e_stop="56802"/>
          <exon e_start="56553" e_stop="56445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCAGTACATTTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGGGTAAGTTTAATCATCAAACGTTCTTAATTAACTTCACAAAACAAATAATTTTGTGATTTTTCTCTTATAATTTGGTAAATTACATTTGGTGTTTATACATCGAAACTAAACAATTAAAAAGCCTATTCTTGGTTGAGTTTGTTGTACGAGACTTGCCTAATACAATATACTTTTTGACTATGATTTATTCATTTGCAATCAATTATTAAAATTAGAATGACTTTATTTTTTTCTTAAAAAAAATGCAGGTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAAC</genome_strand>
        <mrna_strand>TTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCAGTACATTTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGATCTTATTTTTGG........................................................................................................................................................................................................................................................GTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241490" ref_strand="+" ref_description="SGN-E241490 [cLED-28-F13]">
      <seq>gaaaatgcagaagcataatattagtaatgtttataacttgttcaacattatgttgttgatacttgttgagttgccattgagctcgcatgccaatgattattcggagaaatatgcagtgatatttgacgctggaagcactggtagcagagttcatgtctttcgttttaactcaaatttggatctcatcaatatcggcaatgatcttgaactcttcttggcgataaaaccaggtctgagttcatatgcagatgatccaaaggcagctgcaaattctctaaagccccttcttgagaaagctgaagctgttattcctaagaatttacagtctcaaacccctattaaagttggggcaactgcagggctgaggttattaaagggtgattcatctgaaaagattctgcaagcagtaagagatatgctgaaaaatgaaactactctgagttacaaggatgaatgggtctctgttctcgaaggaactctagaaggttcttatttttgggttgctttgaactatttgtatgggaatttgggcaaaaattacccagacaccattgctacaattgatcttggaggtggatcagttcaaattgcttatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="59072" stop="56156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58772" g_stop="58553" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58552" i_stop="57359" i_length="1194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57358" g_stop="57230" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="349" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57229" i_stop="57092" i_length="138">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57091" g_stop="57035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="406" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57034" i_stop="56895" i_length="140">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56894" g_stop="56802" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="499" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56553" g_stop="56456" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="597" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E241490" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58772" e_stop="58553"/>
          <exon e_start="57358" e_stop="57230"/>
          <exon e_start="57091" e_stop="57035"/>
          <exon e_start="56894" e_stop="56802"/>
          <exon e_start="56553" e_stop="56456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGCAGAAGCATAATATTAGTAATGTTTATAACTTGTTCAACATTATGTTGTTGATACTTGTTGGGTTGCCATTGAGCTCGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCGGTACCTACTTAATACAACACTACTACACTTTTTAGCTACAGTATGCCTTGTTTTATTTTGACTTCATATAAAGAAATTAAAAAAAAAAAAGACTTTGAGGGTACATTTGGTAGAGAGGAAAATATTTTTTAAAAATAAACTTAAACTTATTTTCTTTTAGGATAAGAGTGGTAGCGGGTAAGTGGGAGAACGATGATACGGTGAAAAAAAAATTAAAATTTTGAAGTTGAAAATATTTTTTAAAAAGTAATTTTTTTTTTTTAGGGATAGAGGGTGGGGGCTGGTAGTTTCATTTTGTTGTCTTAATACCCTTACCCCTTCTGTTGACACTGATTCTTGTGGATCCATTTGGTTTCGAACCTCATCATTATTCGATTCACTCCTGTTTTTCTGGACCATTTTTTTTCCTTTTGATCTTGTATTGTAGGAATGAGATGTCAGCTTAAGCACAAATCAACCACCTTAATTTAAATGTTGGTAGAGGGTGGGTTGGGGACTGATAAGGTGTGGTGGGTAGGGAGAGGTTAGAAGGGAGTTTTGAAAACATTTTTCTTAAGTTTTTTTTGAAGGGAGTCATTTTTTTTAAATTTTAAAAAAAATAAGTTAATTTGAAAAACATTTAACCAATCAACCTTTTTCATTTTCCTTCCTACCAATCACGCCCTGAATGTTGTAAACTTTGTAGTCATACATTTGTTGTGCTAATAAGAGAAATAGACATTCTTGTTAGAATCCTAGGATAACCTATATCCGCTACAATTTTTGCTCCCGTCTTTTCCCTTTGAGTGAGAACTCTGTGATGAGTATCTTGTTTGCACTGAGTAAACCTGCAACAGTGTAACCTCTGCCTGTCTGGCCCAGCCCATATGGATAAGCATTCTATGGTGAGCATTTTGTGCGCATTAGGTAAATCCCTATTGTGTAATAATCTGTATATTACGGTATAAATATGTAAGCTGCATTGGCAAGACCTATGTAACAGACTCAACTCAGATATTGAGGAGGCATCGATTTCGAATCATACGTGTGGATAACCACCCTCCAAATCAATTGAATGGACAAATAAACCTTTTTCGTAAAACAAATTAAATAGGAAAATATAATAAACGAATCGAATAGAATGAACTAGTAGTAATTTTGCACTGTTATTACCAAAGATCTAGTTATAAGTGAGTTTTCTTTTTACCTTTGCAGATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGGGTCAGTTAATAATTAACTATTTATATCACTCTTAATTCTGATTAAGATTCATAATTATATTATTCCATATGATTGAGGAAAAAAAAGTACTATTAATATTAATTAACATTATTCTTGCGCTAATCTTAATTGATACAGGCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCAGTACATTTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGGGTAAGTTTAATCATCAAACGTTCTTAATTAACTTCACAAAACAAATAATTTTGTGATTTTTCTCTTATAATTTGGTAAATTACATTTGGTGTTTATACATCGAAACTAAACAATTAAAAAGCCTATTCTTGGTTGAGTTTGTTGTACGAGACTTGCCTAATACAATATACTTTTTGACTATGATTTATTCATTTGCAATCAATTATTAAAATTAGAATGACTTTATTTTTTTCTTAAAAAAAATGCAGGTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGC</genome_strand>
        <mrna_strand>GAAAATGCAGAAGCATAATATTAGTAATGTTTATAACTTGTTCAACATTATGTTGTTGATACTTGTTGAGTTGCCATTGAGCTCGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGG..........................................................................................................................................GCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCA............................................................................................................................................GTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGG........................................................................................................................................................................................................................................................GTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312844" ref_strand="+" ref_description="SGN-E312844 [cTOA-8-C8]">
      <seq>aatgcagaagcataatattagtaatgtttataacttgttcaacattatgttgttgatacttgttgggttgccattgagctcgcatgccaatgattattcggagaaatatgcagtgatatttgacgctggaagcactggtagcagagttcatgtctttcgttttaactcaaatttggatctcatcaatatcggcaatgatcttgaactcttcttggcgataaaaccaggtctgagttcatatgcagatgatccaaaggcagctgcaaattctctaaagccccttcttgagaaagctgaagctgttattcctaagaatttacagtctcaaacccctattaaagttggggcaactgcagggctgaggttattaaagggtgattcatctgaaaagattctgcaagcagtaagagatatgctgaaaaatgaaactactctgagttacaaagatgaatgggtctctgttctcgaaagaactctagaaagttcttatttttgggttgctttgaactatttgtatgggaatttgggcaaaaattacccagacaccattgctacaattgatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="59069" stop="56185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58769" g_stop="58553" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58552" i_stop="57359" i_length="1194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57358" g_stop="57230" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="346" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57229" i_stop="57092" i_length="138">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57091" g_stop="57035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="403" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57034" i_stop="56895" i_length="140">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56894" g_stop="56802" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="496" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56553" g_stop="56485" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="565" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E312844" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58769" e_stop="58553"/>
          <exon e_start="57358" e_stop="57230"/>
          <exon e_start="57091" e_stop="57035"/>
          <exon e_start="56894" e_stop="56802"/>
          <exon e_start="56553" e_stop="56485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCAGAAGCATAATATTAGTAATGTTTATAACTTGTTCAACATTATGTTGTTGATACTTGTTGGGTTGCCATTGAGCTCGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCGGTACCTACTTAATACAACACTACTACACTTTTTAGCTACAGTATGCCTTGTTTTATTTTGACTTCATATAAAGAAATTAAAAAAAAAAAAGACTTTGAGGGTACATTTGGTAGAGAGGAAAATATTTTTTAAAAATAAACTTAAACTTATTTTCTTTTAGGATAAGAGTGGTAGCGGGTAAGTGGGAGAACGATGATACGGTGAAAAAAAAATTAAAATTTTGAAGTTGAAAATATTTTTTAAAAAGTAATTTTTTTTTTTTAGGGATAGAGGGTGGGGGCTGGTAGTTTCATTTTGTTGTCTTAATACCCTTACCCCTTCTGTTGACACTGATTCTTGTGGATCCATTTGGTTTCGAACCTCATCATTATTCGATTCACTCCTGTTTTTCTGGACCATTTTTTTTCCTTTTGATCTTGTATTGTAGGAATGAGATGTCAGCTTAAGCACAAATCAACCACCTTAATTTAAATGTTGGTAGAGGGTGGGTTGGGGACTGATAAGGTGTGGTGGGTAGGGAGAGGTTAGAAGGGAGTTTTGAAAACATTTTTCTTAAGTTTTTTTTGAAGGGAGTCATTTTTTTTAAATTTTAAAAAAAATAAGTTAATTTGAAAAACATTTAACCAATCAACCTTTTTCATTTTCCTTCCTACCAATCACGCCCTGAATGTTGTAAACTTTGTAGTCATACATTTGTTGTGCTAATAAGAGAAATAGACATTCTTGTTAGAATCCTAGGATAACCTATATCCGCTACAATTTTTGCTCCCGTCTTTTCCCTTTGAGTGAGAACTCTGTGATGAGTATCTTGTTTGCACTGAGTAAACCTGCAACAGTGTAACCTCTGCCTGTCTGGCCCAGCCCATATGGATAAGCATTCTATGGTGAGCATTTTGTGCGCATTAGGTAAATCCCTATTGTGTAATAATCTGTATATTACGGTATAAATATGTAAGCTGCATTGGCAAGACCTATGTAACAGACTCAACTCAGATATTGAGGAGGCATCGATTTCGAATCATACGTGTGGATAACCACCCTCCAAATCAATTGAATGGACAAATAAACCTTTTTCGTAAAACAAATTAAATAGGAAAATATAATAAACGAATCGAATAGAATGAACTAGTAGTAATTTTGCACTGTTATTACCAAAGATCTAGTTATAAGTGAGTTTTCTTTTTACCTTTGCAGATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGGGTCAGTTAATAATTAACTATTTATATCACTCTTAATTCTGATTAAGATTCATAATTATATTATTCCATATGATTGAGGAAAAAAAAGTACTATTAATATTAATTAACATTATTCTTGCGCTAATCTTAATTGATACAGGCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCAGTACATTTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGGGTAAGTTTAATCATCAAACGTTCTTAATTAACTTCACAAAACAAATAATTTTGTGATTTTTCTCTTATAATTTGGTAAATTACATTTGGTGTTTATACATCGAAACTAAACAATTAAAAAGCCTATTCTTGGTTGAGTTTGTTGTACGAGACTTGCCTAATACAATATACTTTTTGACTATGATTTATTCATTTGCAATCAATTATTAAAATTAGAATGACTTTATTTTTTTCTTAAAAAAAATGCAGGTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTT</genome_strand>
        <mrna_strand>AATGCAGAAGCATAATATTAGTAATGTTTATAACTTGTTCAACATTATGTTGTTGATACTTGTTGGGTTGCCATTGAGCTCGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGG..........................................................................................................................................GCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCA............................................................................................................................................GTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAAGATGAATGGGTCTCTGTTCTCGAAAGAACTCTAGAAAGTTCTTATTTTTGG........................................................................................................................................................................................................................................................GTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366585" ref_strand="+" ref_description="SGN-E366585 [cLPT-13-B3]">
      <seq>tgcagaagctttatattagtaatgtttataacttgttcaagattatgttgttgatacttgttgggttgccactgagctcgttatcgaagcatgccaatgattattcggagaaatatgcagtgatatttgacgctggaagcactggtagcagagttcatgtctttcgttttaactcaaatttggaactcatcaatatcggcaatgatcttgaactcttcttggcgataaaaccaggtctgagttcatatgcagatgatccaaaggcagctgctaattctctaaagccccttcttgagaaagctgaagctgttattcctaagaatctacagtctcaaacccctattaaagttggggcaactgcacgactgaggttattaaagggtgattcatctgaaaagattctgcaagcagtgagagacatgctgaaaaatgaaactactctgagttacaaggatgaatgggtctctgttctcgagggaactctagaaggttcttatttttgagttgctttgaactatttggatgggaatttgggcaaaaattacccagacacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="59067" stop="56202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58767" g_stop="58553" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58552" i_stop="57359" i_length="1194">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57358" g_stop="57230" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="353" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57229" i_stop="57092" i_length="138">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57091" g_stop="57035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="410" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57034" i_stop="56895" i_length="140">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.783" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56894" g_stop="56802" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="503" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56553" g_stop="56502" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="555" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E366585" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58767" e_stop="58553"/>
          <exon e_start="57358" e_stop="57230"/>
          <exon e_start="57091" e_stop="57035"/>
          <exon e_start="56894" e_stop="56802"/>
          <exon e_start="56553" e_stop="56502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAAGCATAATATTAGTAATGTTTATAACTTGTTCAACATTATGTTGTTGATACTTGTTGGGTTGCCATTGAG--C----TCG---CATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCGGTACCTACTTAATACAACACTACTACACTTTTTAGCTACAGTATGCCTTGTTTTATTTTGACTTCATATAAAGAAATTAAAAAAAAAAAAGACTTTGAGGGTACATTTGGTAGAGAGGAAAATATTTTTTAAAAATAAACTTAAACTTATTTTCTTTTAGGATAAGAGTGGTAGCGGGTAAGTGGGAGAACGATGATACGGTGAAAAAAAAATTAAAATTTTGAAGTTGAAAATATTTTTTAAAAAGTAATTTTTTTTTTTTAGGGATAGAGGGTGGGGGCTGGTAGTTTCATTTTGTTGTCTTAATACCCTTACCCCTTCTGTTGACACTGATTCTTGTGGATCCATTTGGTTTCGAACCTCATCATTATTCGATTCACTCCTGTTTTTCTGGACCATTTTTTTTCCTTTTGATCTTGTATTGTAGGAATGAGATGTCAGCTTAAGCACAAATCAACCACCTTAATTTAAATGTTGGTAGAGGGTGGGTTGGGGACTGATAAGGTGTGGTGGGTAGGGAGAGGTTAGAAGGGAGTTTTGAAAACATTTTTCTTAAGTTTTTTTTGAAGGGAGTCATTTTTTTTAAATTTTAAAAAAAATAAGTTAATTTGAAAAACATTTAACCAATCAACCTTTTTCATTTTCCTTCCTACCAATCACGCCCTGAATGTTGTAAACTTTGTAGTCATACATTTGTTGTGCTAATAAGAGAAATAGACATTCTTGTTAGAATCCTAGGATAACCTATATCCGCTACAATTTTTGCTCCCGTCTTTTCCCTTTGAGTGAGAACTCTGTGATGAGTATCTTGTTTGCACTGAGTAAACCTGCAACAGTGTAACCTCTGCCTGTCTGGCCCAGCCCATATGGATAAGCATTCTATGGTGAGCATTTTGTGCGCATTAGGTAAATCCCTATTGTGTAATAATCTGTATATTACGGTATAAATATGTAAGCTGCATTGGCAAGACCTATGTAACAGACTCAACTCAGATATTGAGGAGGCATCGATTTCGAATCATACGTGTGGATAACCACCCTCCAAATCAATTGAATGGACAAATAAACCTTTTTCGTAAAACAAATTAAATAGGAAAATATAATAAACGAATCGAATAGAATGAACTAGTAGTAATTTTGCACTGTTATTACCAAAGATCTAGTTATAAGTGAGTTTTCTTTTTACCTTTGCAGATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGGGTCAGTTAATAATTAACTATTTATATCACTCTTAATTCTGATTAAGATTCATAATTATATTATTCCATATGATTGAGGAAAAAAAAGTACTATTAATATTAATTAACATTATTCTTGCGCTAATCTTAATTGATACAGGCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCAGTACATTTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGGGTAAGTTTAATCATCAAACGTTCTTAATTAACTTCACAAAACAAATAATTTTGTGATTTTTCTCTTATAATTTGGTAAATTACATTTGGTGTTTATACATCGAAACTAAACAATTAAAAAGCCTATTCTTGGTTGAGTTTGTTGTACGAGACTTGCCTAATACAATATACTTTTTGACTATGATTTATTCATTTGCAATCAATTATTAAAATTAGAATGACTTTATTTTTTTCTTAAAAAAAATGCAGGTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCA</genome_strand>
        <mrna_strand>TGCAGAAGCTTTATATTAGTAATGTTTATAACTTGTTCAAGATTATGTTGTTGATACTTGTTGGGTTGCCACTGAGCTCGTTATCGAAGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGAACTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCTAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATCTACAGTCTCAAACCCCTATTAAAGTTGGG..........................................................................................................................................GCAACTGCACGACTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCA............................................................................................................................................GTGAGAGACATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAGGGAACTCTAGAAGGTTCTTATTTTTGA........................................................................................................................................................................................................................................................GTTGCTTTGAACTATTTGGATGGGAATTTGGGCAAAAATTACCCAGACACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328832" ref_strand="+" ref_description="SGN-E328832 [cTOC-24-I1]">
      <seq>gaaaatgcagaagcataatattagtaatgtttataacttgttcaacattatgttgttgatacttgttgggttgccattgagctcgcatgccaatgattattcggagaaatatgcagtgatatttgacgctggaagcactggtagcagagttcatgtctttcgttttaactcaaatttggatctcatcaatatcggcaatgatcttgaactcttcttggcgataaaaccaggtctgagttcatatgcagatgatccaaaggcagctgcaaattctctaaagccccttcttgagaaagctgaagctgttattcctaagaatttacagtctcaaacccctattaaagttggggcaactgcagggctgaggttattaaagggtgattcatctgaaaagattctgcaagcagtaagagatatgctgaaaaatgaaactactctgagttacaaggatgaatgggtctctgttctcgaaggaactctagaaggttcttatttttgggttgctttgaactatttgtatgggaatttgggcaaaaattacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="59072" stop="56211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58772" g_stop="58553" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58552" i_stop="57359" i_length="1194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57358" g_stop="57230" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="349" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57229" i_stop="57092" i_length="138">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57091" g_stop="57035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="406" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57034" i_stop="56895" i_length="140">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56894" g_stop="56802" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="499" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56553" g_stop="56511" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="542" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E328832" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58772" e_stop="58553"/>
          <exon e_start="57358" e_stop="57230"/>
          <exon e_start="57091" e_stop="57035"/>
          <exon e_start="56894" e_stop="56802"/>
          <exon e_start="56553" e_stop="56511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGCAGAAGCATAATATTAGTAATGTTTATAACTTGTTCAACATTATGTTGTTGATACTTGTTGGGTTGCCATTGAGCTCGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCGGTACCTACTTAATACAACACTACTACACTTTTTAGCTACAGTATGCCTTGTTTTATTTTGACTTCATATAAAGAAATTAAAAAAAAAAAAGACTTTGAGGGTACATTTGGTAGAGAGGAAAATATTTTTTAAAAATAAACTTAAACTTATTTTCTTTTAGGATAAGAGTGGTAGCGGGTAAGTGGGAGAACGATGATACGGTGAAAAAAAAATTAAAATTTTGAAGTTGAAAATATTTTTTAAAAAGTAATTTTTTTTTTTTAGGGATAGAGGGTGGGGGCTGGTAGTTTCATTTTGTTGTCTTAATACCCTTACCCCTTCTGTTGACACTGATTCTTGTGGATCCATTTGGTTTCGAACCTCATCATTATTCGATTCACTCCTGTTTTTCTGGACCATTTTTTTTCCTTTTGATCTTGTATTGTAGGAATGAGATGTCAGCTTAAGCACAAATCAACCACCTTAATTTAAATGTTGGTAGAGGGTGGGTTGGGGACTGATAAGGTGTGGTGGGTAGGGAGAGGTTAGAAGGGAGTTTTGAAAACATTTTTCTTAAGTTTTTTTTGAAGGGAGTCATTTTTTTTAAATTTTAAAAAAAATAAGTTAATTTGAAAAACATTTAACCAATCAACCTTTTTCATTTTCCTTCCTACCAATCACGCCCTGAATGTTGTAAACTTTGTAGTCATACATTTGTTGTGCTAATAAGAGAAATAGACATTCTTGTTAGAATCCTAGGATAACCTATATCCGCTACAATTTTTGCTCCCGTCTTTTCCCTTTGAGTGAGAACTCTGTGATGAGTATCTTGTTTGCACTGAGTAAACCTGCAACAGTGTAACCTCTGCCTGTCTGGCCCAGCCCATATGGATAAGCATTCTATGGTGAGCATTTTGTGCGCATTAGGTAAATCCCTATTGTGTAATAATCTGTATATTACGGTATAAATATGTAAGCTGCATTGGCAAGACCTATGTAACAGACTCAACTCAGATATTGAGGAGGCATCGATTTCGAATCATACGTGTGGATAACCACCCTCCAAATCAATTGAATGGACAAATAAACCTTTTTCGTAAAACAAATTAAATAGGAAAATATAATAAACGAATCGAATAGAATGAACTAGTAGTAATTTTGCACTGTTATTACCAAAGATCTAGTTATAAGTGAGTTTTCTTTTTACCTTTGCAGATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGGGTCAGTTAATAATTAACTATTTATATCACTCTTAATTCTGATTAAGATTCATAATTATATTATTCCATATGATTGAGGAAAAAAAAGTACTATTAATATTAATTAACATTATTCTTGCGCTAATCTTAATTGATACAGGCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCAGTACATTTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGGGTAAGTTTAATCATCAAACGTTCTTAATTAACTTCACAAAACAAATAATTTTGTGATTTTTCTCTTATAATTTGGTAAATTACATTTGGTGTTTATACATCGAAACTAAACAATTAAAAAGCCTATTCTTGGTTGAGTTTGTTGTACGAGACTTGCCTAATACAATATACTTTTTGACTATGATTTATTCATTTGCAATCAATTATTAAAATTAGAATGACTTTATTTTTTTCTTAAAAAAAATGCAGGTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACC</genome_strand>
        <mrna_strand>GAAAATGCAGAAGCATAATATTAGTAATGTTTATAACTTGTTCAACATTATGTTGTTGATACTTGTTGGGTTGCCATTGAGCTCGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGG..........................................................................................................................................GCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCA............................................................................................................................................GTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGG........................................................................................................................................................................................................................................................GTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324092" ref_strand="+" ref_description="SGN-E324092 [cTOC-3-O16]">
      <seq>gaaaatgcagaagcataatattagtaatgtttataacttgttcaacattatgttgttgatacttgttgggttgccattgagctcgcatgccaatgattattcggagaaatatgcagtgatatttgacgctggaagcactggtagcagagttcatgtctttcgttttaactcaaatttggatctcatcaatatcggcaatgatcttgaactcttcttggcgataaaaccaggtctgagttcatatgcagatgatccaaaggcagctgcaaattctctaaagccccttcttgagaaagctgaagctgttattcctaagaatttacagtctcaaacccctattaaagttggggcaactgcagggctgaggttattaaagggtgattcatctgaaaagattctgcaagcagtaagagatatgctgaaaaatgaaactactctgagttacaaggatgaatgggtctctgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="59072" stop="56533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58772" g_stop="58553" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58552" i_stop="57359" i_length="1194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57358" g_stop="57230" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="349" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57229" i_stop="57092" i_length="138">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57091" g_stop="57035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="406" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57034" i_stop="56895" i_length="140">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56894" g_stop="56833" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="468" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E324092" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58772" e_stop="58553"/>
          <exon e_start="57358" e_stop="57230"/>
          <exon e_start="57091" e_stop="57035"/>
          <exon e_start="56894" e_stop="56833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGCAGAAGCATAATATTAGTAATGTTTATAACTTGTTCAACATTATGTTGTTGATACTTGTTGGGTTGCCATTGAGCTCGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCGGTACCTACTTAATACAACACTACTACACTTTTTAGCTACAGTATGCCTTGTTTTATTTTGACTTCATATAAAGAAATTAAAAAAAAAAAAGACTTTGAGGGTACATTTGGTAGAGAGGAAAATATTTTTTAAAAATAAACTTAAACTTATTTTCTTTTAGGATAAGAGTGGTAGCGGGTAAGTGGGAGAACGATGATACGGTGAAAAAAAAATTAAAATTTTGAAGTTGAAAATATTTTTTAAAAAGTAATTTTTTTTTTTTAGGGATAGAGGGTGGGGGCTGGTAGTTTCATTTTGTTGTCTTAATACCCTTACCCCTTCTGTTGACACTGATTCTTGTGGATCCATTTGGTTTCGAACCTCATCATTATTCGATTCACTCCTGTTTTTCTGGACCATTTTTTTTCCTTTTGATCTTGTATTGTAGGAATGAGATGTCAGCTTAAGCACAAATCAACCACCTTAATTTAAATGTTGGTAGAGGGTGGGTTGGGGACTGATAAGGTGTGGTGGGTAGGGAGAGGTTAGAAGGGAGTTTTGAAAACATTTTTCTTAAGTTTTTTTTGAAGGGAGTCATTTTTTTTAAATTTTAAAAAAAATAAGTTAATTTGAAAAACATTTAACCAATCAACCTTTTTCATTTTCCTTCCTACCAATCACGCCCTGAATGTTGTAAACTTTGTAGTCATACATTTGTTGTGCTAATAAGAGAAATAGACATTCTTGTTAGAATCCTAGGATAACCTATATCCGCTACAATTTTTGCTCCCGTCTTTTCCCTTTGAGTGAGAACTCTGTGATGAGTATCTTGTTTGCACTGAGTAAACCTGCAACAGTGTAACCTCTGCCTGTCTGGCCCAGCCCATATGGATAAGCATTCTATGGTGAGCATTTTGTGCGCATTAGGTAAATCCCTATTGTGTAATAATCTGTATATTACGGTATAAATATGTAAGCTGCATTGGCAAGACCTATGTAACAGACTCAACTCAGATATTGAGGAGGCATCGATTTCGAATCATACGTGTGGATAACCACCCTCCAAATCAATTGAATGGACAAATAAACCTTTTTCGTAAAACAAATTAAATAGGAAAATATAATAAACGAATCGAATAGAATGAACTAGTAGTAATTTTGCACTGTTATTACCAAAGATCTAGTTATAAGTGAGTTTTCTTTTTACCTTTGCAGATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGGGTCAGTTAATAATTAACTATTTATATCACTCTTAATTCTGATTAAGATTCATAATTATATTATTCCATATGATTGAGGAAAAAAAAGTACTATTAATATTAATTAACATTATTCTTGCGCTAATCTTAATTGATACAGGCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCAGTACATTTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCT</genome_strand>
        <mrna_strand>GAAAATGCAGAAGCATAATATTAGTAATGTTTATAACTTGTTCAACATTATGTTGTTGATACTTGTTGGGTTGCCATTGAGCTCGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGG..........................................................................................................................................GCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCA............................................................................................................................................GTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238586" ref_strand="+" ref_description="SGN-E238586 [cLED-17-D6]">
      <seq>gaaaatgcagaagcataatattagtaatgtttataacttgttcaacattatgttgttgatacttgttgggttgccattgagctcgcatgccaatgattattcggagaaatatgcagtgatatttgacgctggaagcactggtagcagagttcatgtctttcgttttaactcaaatttggatctcatcaatatcggcaatgatcttgaactcttcttggcgataaaaccaggtctgagttcatatgcagatgatccaaaggcagctgcaaattctctaaagccccttcttgagaaagctgaagctgttattcctaagaatttacagtctcaaacccctattaaagttggggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="59072" stop="56926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58772" g_stop="58553" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58552" i_stop="57359" i_length="1194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57358" g_stop="57230" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="349" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E238586" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58772" e_stop="58553"/>
          <exon e_start="57358" e_stop="57230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGCAGAAGCATAATATTAGTAATGTTTATAACTTGTTCAACATTATGTTGTTGATACTTGTTGGGTTGCCATTGAGCTCGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCGGTACCTACTTAATACAACACTACTACACTTTTTAGCTACAGTATGCCTTGTTTTATTTTGACTTCATATAAAGAAATTAAAAAAAAAAAAGACTTTGAGGGTACATTTGGTAGAGAGGAAAATATTTTTTAAAAATAAACTTAAACTTATTTTCTTTTAGGATAAGAGTGGTAGCGGGTAAGTGGGAGAACGATGATACGGTGAAAAAAAAATTAAAATTTTGAAGTTGAAAATATTTTTTAAAAAGTAATTTTTTTTTTTTAGGGATAGAGGGTGGGGGCTGGTAGTTTCATTTTGTTGTCTTAATACCCTTACCCCTTCTGTTGACACTGATTCTTGTGGATCCATTTGGTTTCGAACCTCATCATTATTCGATTCACTCCTGTTTTTCTGGACCATTTTTTTTCCTTTTGATCTTGTATTGTAGGAATGAGATGTCAGCTTAAGCACAAATCAACCACCTTAATTTAAATGTTGGTAGAGGGTGGGTTGGGGACTGATAAGGTGTGGTGGGTAGGGAGAGGTTAGAAGGGAGTTTTGAAAACATTTTTCTTAAGTTTTTTTTGAAGGGAGTCATTTTTTTTAAATTTTAAAAAAAATAAGTTAATTTGAAAAACATTTAACCAATCAACCTTTTTCATTTTCCTTCCTACCAATCACGCCCTGAATGTTGTAAACTTTGTAGTCATACATTTGTTGTGCTAATAAGAGAAATAGACATTCTTGTTAGAATCCTAGGATAACCTATATCCGCTACAATTTTTGCTCCCGTCTTTTCCCTTTGAGTGAGAACTCTGTGATGAGTATCTTGTTTGCACTGAGTAAACCTGCAACAGTGTAACCTCTGCCTGTCTGGCCCAGCCCATATGGATAAGCATTCTATGGTGAGCATTTTGTGCGCATTAGGTAAATCCCTATTGTGTAATAATCTGTATATTACGGTATAAATATGTAAGCTGCATTGGCAAGACCTATGTAACAGACTCAACTCAGATATTGAGGAGGCATCGATTTCGAATCATACGTGTGGATAACCACCCTCCAAATCAATTGAATGGACAAATAAACCTTTTTCGTAAAACAAATTAAATAGGAAAATATAATAAACGAATCGAATAGAATGAACTAGTAGTAATTTTGCACTGTTATTACCAAAGATCTAGTTATAAGTGAGTTTTCTTTTTACCTTTGCAGATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGG</genome_strand>
        <mrna_strand>GAAAATGCAGAAGCATAATATTAGTAATGTTTATAACTTGTTCAACATTATGTTGTTGATACTTGTTGGGTTGCCATTGAGCTCGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340632" ref_strand="-" ref_description="SGN-E340632 [cTOF-1-K4]">
      <seq>tcttcttcttcttaatctgccaaaacccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71626" stop="25155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71319" g_stop="71264" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="83" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="229" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="287" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68935" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="689" r_length="402" r_score="0.998"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68934" i_stop="67752" i_length="1183">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67751" g_stop="67730" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="711" r_length="22" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E340632" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340632" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71319" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68935"/>
          <exon e_start="67751" e_stop="67730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTGAATATTCTGTTCTGTTTAAAAACTACTAACCTTTTGTGTTAGCGAATTTAGTTTTAGAGGTAATTTGGGATAAAAACGTGTGTAAGGAAGTCTAGTTATATTTTAAGTAGTACAATATATTTGGTTTAGAGGTTAAAATCGTATATCAAACCCATAATTTTGAATGTCAACACTACTGGTATTTTGTCCCTTTGTGCGTAAAAGATAATTGAAATAACATCTCAAGCTCTTGTGAAATTCAAATATATTTTATATTTAATTATATGTTCAAGCTCTCTATTTTGATATAATTACTCTGGCTTTCTATGTGATAATTTACTCTTGCACTGCTGCTGGTAATCACATCGCCGACTAGTTTTGTGTAATTGTTGCTTCAGAAGCTACTTCCCCTGAAATTTTGGGTGCAAATCAACCAACATTTAGTGAAATTAGAAAATGCAATAAGGTGGTTCTTGCTCTTTGAGCTTCAAAAGTAAAACCAAACCAATTCCCCTTCCTCAATACAAAGAAAGTTTTGAACAGAAAACGAAACTCAACCATTGTTAAAAGACTCAATCATTGATTCATCTTAATCAGATATCCTTCTTGAAGGTGACTCCAGTTGATGGGAGCCATTTGTCTCCCTGAATCAATTGTGCAACTGAAAACTTGCTAGCTTCTTTACTAGTAATATTCAATCTCAATCCCTTCCAGTTGACTCTCTTCTTAGTCACAGCCCCAGCGCCAAAGTTTCTATATTCAGCATAGTAAATAGTGTCTGGTGCTGTAGTACCCACCCAGGGTAACCACCCTTTAGGATCAATAAAGCTATTCATTGTCGTATACATGAAAACGGTCGTGGAATAGTTCTTCCATGGCCTACCCAAGAAGGTACTGACTCCAGTAAGGTTAGCTGAGGGCCAAACAGTGCAATTGTGAATAGAAATGCCTGTGTTCTGATTAGGGTCGATTTTGCCTTGAGCTGTGATGGTGTTCTGTTGGCCTGGCATTGGTTTCTTGGGCAGTATGTTGCAATTCTGGAAAACAACTGCCGAGTTACCGAATATGAAGTCTACAGTGCCATAGATATTGCATTCTCTGTAGAATTGACGATTGGAGTGTGTGTAGAGTGTGTCTTGGTACGCGTCAAATTTGCAGCGGTAAAAAACAGAGAGATCAG</genome_strand>
        <mrna_strand>CCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373565" ref_strand="+" ref_description="SGN-E373565 [TUS-31-P22]">
      <seq>gaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71459" stop="7912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71159" g_stop="71017" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="201" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69336" g_stop="68955" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="583" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68954" i_stop="67752" i_length="1203">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67751" g_stop="67731" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="604" r_length="21" r_score="0.524"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E373565" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71159" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68955"/>
          <exon e_start="67751" e_stop="67731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTGAATATTCTGTTCTGTTTAAAAACTACTAACCTTTTGTGTTAGCGAATTTAGTTTTAGAGGTAATTTGGGATAAAAACGTGTGTAAGGAAGTCTAGTTATATTTTAAGTAGTACAATATATTTGGTTTAGAGGTTAAAATCGTATATCAAACCCATAATTTTGAATGTCAACACTACTGGTATTTTGTCCCTTTGTGCGTAAAAGATAATTGAAATAACATCTCAAGCTCTTGTGAAATTCAAATATATTTTATATTTAATTATATGTTCAAGCTCTCTATTTTGATATAATTACTCTGGCTTTCTATGTGATAATTTACTCTTGCACTGCTGCTGGTAATCACATCGCCGACTAGTTTTGTGTAATTGTTGCTTCAGAAGCTACTTCCCCTGAAATTTTGGGTGCAAATCAACCAACATTTAGTGAAATTAGAAAATGCAATAAGGTGGTTCTTGCTCTTTGAGCTTCAAAAGTAAAACCAAACCAATTCCCCTTCCTCAATACAAAGAAAGTTTTGAACAGAAAACGAAACTCAACCATTGTTAAAAGACTCAATCATTGATTCATCTTAATCAGATATCCTTCTTGAAGGTGACTCCAGTTGATGGGAGCCATTTGTCTCCCTGAATCAATTGTGCAACTGAAAACTTGCTAGCTTCTTTACTAGTAATATTCAATCTCAATCCCTTCCAGTTGACTCTCTTCTTAGTCACAGCCCCAGCGCCAAAGTTTCTATATTCAGCATAGTAAATAGTGTCTGGTGCTGTAGTACCCACCCAGGGTAACCACCCTTTAGGATCAATAAAGCTATTCATTGTCGTATACATGAAAACGGTCGTGGAATAGTTCTTCCATGGCCTACCCAAGAAGGTACTGACTCCAGTAAGGTTAGCTGAGGGCCAAACAGTGCAATTGTGAATAGAAATGCCTGTGTTCTGATTAGGGTCGATTTTGCCTTGAGCTGTGATGGTGTTCTGTTGGCCTGGCATTGGTTTCTTGGGCAGTATGTTGCAATTCTGGAAAACAACTGCCGAGTTACCGAATATGAAGTCTACAGTGCCATAGATATTGCATTCTCTGTAGAATTGACGATTGGAGTGTGTGTAGAGTGTGTCTTGGTACGCGTCAAATTTGCAGCGGTAAAAAACAGAGAGATCA</genome_strand>
        <mrna_strand>GAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372713" ref_strand="+" ref_description="SGN-E372713 [TUS-31-O23]">
      <seq>gaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71459" stop="7910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71159" g_stop="71017" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="201" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69336" g_stop="68949" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="589" r_length="388" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68948" i_stop="67752" i_length="1197">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67751" g_stop="67735" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="606" r_length="17" r_score="0.529"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E372713" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71159" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68949"/>
          <exon e_start="67751" e_stop="67735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTGAATATTCTGTTCTGTTTAAAAACTACTAACCTTTTGTGTTAGCGAATTTAGTTTTAGAGGTAATTTGGGATAAAAACGTGTGTAAGGAAGTCTAGTTATATTTTAAGTAGTACAATATATTTGGTTTAGAGGTTAAAATCGTATATCAAACCCATAATTTTGAATGTCAACACTACTGGTATTTTGTCCCTTTGTGCGTAAAAGATAATTGAAATAACATCTCAAGCTCTTGTGAAATTCAAATATATTTTATATTTAATTATATGTTCAAGCTCTCTATTTTGATATAATTACTCTGGCTTTCTATGTGATAATTTACTCTTGCACTGCTGCTGGTAATCACATCGCCGACTAGTTTTGTGTAATTGTTGCTTCAGAAGCTACTTCCCCTGAAATTTTGGGTGCAAATCAACCAACATTTAGTGAAATTAGAAAATGCAATAAGGTGGTTCTTGCTCTTTGAGCTTCAAAAGTAAAACCAAACCAATTCCCCTTCCTCAATACAAAGAAAGTTTTGAACAGAAAACGAAACTCAACCATTGTTAAAAGACTCAATCATTGATTCATCTTAATCAGATATCCTTCTTGAAGGTGACTCCAGTTGATGGGAGCCATTTGTCTCCCTGAATCAATTGTGCAACTGAAAACTTGCTAGCTTCTTTACTAGTAATATTCAATCTCAATCCCTTCCAGTTGACTCTCTTCTTAGTCACAGCCCCAGCGCCAAAGTTTCTATATTCAGCATAGTAAATAGTGTCTGGTGCTGTAGTACCCACCCAGGGTAACCACCCTTTAGGATCAATAAAGCTATTCATTGTCGTATACATGAAAACGGTCGTGGAATAGTTCTTCCATGGCCTACCCAAGAAGGTACTGACTCCAGTAAGGTTAGCTGAGGGCCAAACAGTGCAATTGTGAATAGAAATGCCTGTGTTCTGATTAGGGTCGATTTTGCCTTGAGCTGTGATGGTGTTCTGTTGGCCTGGCATTGGTTTCTTGGGCAGTATGTTGCAATTCTGGAAAACAACTGCCGAGTTACCGAATATGAAGTCTACAGTGCCATAGATATTGCATTCTCTGTAGAATTGACGATTGGAGTGTGTGTAGAGTGTGTCTTGGTACGCGTCAAATTTGCAGCGGTAAAAAACAGAGAG</genome_strand>
        <mrna_strand>GAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373564" ref_strand="+" ref_description="SGN-E373564 [TUS-31-P22](-)">
      <seq>ggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatttacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttttccatttcatacaagcctgtcaagcacggtaggcccggtattggtgctactcacttttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttccaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71460" stop="7912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71160" g_stop="71017" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="202" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69336" g_stop="68949" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="590" r_length="388" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68948" i_stop="67752" i_length="1197">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67751" g_stop="67736" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="606" r_length="16" r_score="0.562"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E373564" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71160" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68949"/>
          <exon e_start="67751" e_stop="67736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTGAATATTCTGTTCTGTTTAAAAACTACTAACCTTTTGTGTTAGCGAATTTAGTTTTAGAGGTAATTTGGGATAAAAACGTGTGTAAGGAAGTCTAGTTATATTTTAAGTAGTACAATATATTTGGTTTAGAGGTTAAAATCGTATATCAAACCCATAATTTTGAATGTCAACACTACTGGTATTTTGTCCCTTTGTGCGTAAAAGATAATTGAAATAACATCTCAAGCTCTTGTGAAATTCAAATATATTTTATATTTAATTATATGTTCAAGCTCTCTATTTTGATATAATTACTCTGGCTTTCTATGTGATAATTTACTCTTGCACTGCTGCTGGTAATCACATCGCCGACTAGTTTTGTGTAATTGTTGCTTCAGAAGCTACTTCCCCTGAAATTTTGGGTGCAAATCAACCAACATTTAGTGAAATTAGAAAATGCAATAAGGTGGTTCTTGCTCTTTGAGCTTCAAAAGTAAAACCAAACCAATTCCCCTTCCTCAATACAAAGAAAGTTTTGAACAGAAAACGAAACTCAACCATTGTTAAAAGACTCAATCATTGATTCATCTTAATCAGATATCCTTCTTGAAGGTGACTCCAGTTGATGGGAGCCATTTGTCTCCCTGAATCAATTGTGCAACTGAAAACTTGCTAGCTTCTTTACTAGTAATATTCAATCTCAATCCCTTCCAGTTGACTCTCTTCTTAGTCACAGCCCCAGCGCCAAAGTTTCTATATTCAGCATAGTAAATAGTGTCTGGTGCTGTAGTACCCACCCAGGGTAACCACCCTTTAGGATCAATAAAGCTATTCATTGTCGTATACATGAAAACGGTCGTGGAATAGTTCTTCCATGGCCTACCCAAGAAGGTACTGACTCCAGTAAGGTTAGCTGAGGGCCAAACAGTGCAATTGTGAATAGAAATGCCTGTGTTCTGATTAGGGTCGATTTTGCCTTGAGCTGTGATGGTGTTCTGTTGGCCTGGCATTGGTTTCTTGGGCAGTATGTTGCAATTCTGGAAAACAACTGCCGAGTTACCGAATATGAAGTCTACAGTGCCATAGATATTGCATTCTCTGTAGAATTGACGATTGGAGTGTGTGTAGAGTGTGTCTTGGTACGCGTCAAATTTGCAGCGGTAAAAAACAGAGA</genome_strand>
        <mrna_strand>GGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATTTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTTTCCATTTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTTTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCCAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372712" ref_strand="+" ref_description="SGN-E372712 [TUS-31-O23](-)">
      <seq>ggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgaaatgattggaagtgtcattggaatttacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatttcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgccacatttcaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71460" stop="7911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71160" g_stop="71017" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="202" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69336" g_stop="68949" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="590" r_length="388" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68948" i_stop="67752" i_length="1197">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67751" g_stop="67736" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="606" r_length="16" r_score="0.562"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E372712" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71160" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68949"/>
          <exon e_start="67751" e_stop="67736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTGAATATTCTGTTCTGTTTAAAAACTACTAACCTTTTGTGTTAGCGAATTTAGTTTTAGAGGTAATTTGGGATAAAAACGTGTGTAAGGAAGTCTAGTTATATTTTAAGTAGTACAATATATTTGGTTTAGAGGTTAAAATCGTATATCAAACCCATAATTTTGAATGTCAACACTACTGGTATTTTGTCCCTTTGTGCGTAAAAGATAATTGAAATAACATCTCAAGCTCTTGTGAAATTCAAATATATTTTATATTTAATTATATGTTCAAGCTCTCTATTTTGATATAATTACTCTGGCTTTCTATGTGATAATTTACTCTTGCACTGCTGCTGGTAATCACATCGCCGACTAGTTTTGTGTAATTGTTGCTTCAGAAGCTACTTCCCCTGAAATTTTGGGTGCAAATCAACCAACATTTAGTGAAATTAGAAAATGCAATAAGGTGGTTCTTGCTCTTTGAGCTTCAAAAGTAAAACCAAACCAATTCCCCTTCCTCAATACAAAGAAAGTTTTGAACAGAAAACGAAACTCAACCATTGTTAAAAGACTCAATCATTGATTCATCTTAATCAGATATCCTTCTTGAAGGTGACTCCAGTTGATGGGAGCCATTTGTCTCCCTGAATCAATTGTGCAACTGAAAACTTGCTAGCTTCTTTACTAGTAATATTCAATCTCAATCCCTTCCAGTTGACTCTCTTCTTAGTCACAGCCCCAGCGCCAAAGTTTCTATATTCAGCATAGTAAATAGTGTCTGGTGCTGTAGTACCCACCCAGGGTAACCACCCTTTAGGATCAATAAAGCTATTCATTGTCGTATACATGAAAACGGTCGTGGAATAGTTCTTCCATGGCCTACCCAAGAAGGTACTGACTCCAGTAAGGTTAGCTGAGGGCCAAACAGTGCAATTGTGAATAGAAATGCCTGTGTTCTGATTAGGGTCGATTTTGCCTTGAGCTGTGATGGTGTTCTGTTGGCCTGGCATTGGTTTCTTGGGCAGTATGTTGCAATTCTGGAAAACAACTGCCGAGTTACCGAATATGAAGTCTACAGTGCCATAGATATTGCATTCTCTGTAGAATTGACGATTGGAGTGTGTGTAGAGTGTGTCTTGGTACGCGTCAAATTTGCAGCGGTAAAAAACAGAGA</genome_strand>
        <mrna_strand>GGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAAATGATTGGAAGTGTCATTGGAATTTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATTTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCCACATTTCAAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266661" ref_strand="-" ref_description="SGN-E266661 [cLEI-5-M16]">
      <seq>tgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaaaactagtacttttgttttactgcaattttgatgaggacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttccatttagatttttgaacccctttgtttctctgcaaaaaaaaaaaaaaaaaaaaaactcgcctgcagcccgggggatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="69494" stop="25145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69194" g_stop="68910" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68909" i_stop="68476" i_length="434">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68475" g_stop="68452" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="309" r_length="24" r_score="0.542"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68451" i_stop="68298" i_length="154">
            <donor d_prob="0.811" d_score="0.00"/>
            <acceptor a_prob="0.230" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68297" g_stop="68276" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="331" r_length="22" r_score="0.545"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E266661" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266661" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69194" e_stop="68910"/>
          <exon e_start="68475" e_stop="68452"/>
          <exon e_start="68297" e_stop="68276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTGAATATTCTGTTCTGTTTAAAAACTACTAACCTTTTGTGTTAGCGAATTTAGTTTTAGAGGTAATTTGGGATAAAAACGTGTGTAAGGAAGTCTAGTTATATTTTAAGTAGTACAATATATTTGGTTTAGAGGTTAAAATCGTATATCAAACCCATAATTTTGAATGTCAACACTACTGGTATTTTGTCCCTTTGTGCGTAAAAGATAATTGAAATAACATCTCAAGCTCTTGTGAAATTCAAATATATTTTATATTTAATTATATGTTCAAGCTCTCTATTTTGATATAATTACTCTGGCTTTCTATGTGATAATTTACTCTTGCACTGCTGCTGGTAATCACATCGCCGACTAGTTTTGTGTAATTGTTGCTTCAGAAGCTACTTCCCCTGAAATTTTGGGTGCAAATCAACCAACATTTAGTGAAATTAGAAAATGCAATAAGGTGGTTCTTGCTCTTTGAGCTTCAAAAGTAAAACCAAACCAATTCCCCTTCCTCAATACAAAGAAAGTTTTGAACAGAAAACGAAACTCAACCATTGTTAAAAGACTCAATCATTGATTCATCTTAATCAGATATCCTTCTTGAAGGTGACTCCAGTTGATGGGAGCC</genome_strand>
        <mrna_strand>TGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAAAACTAGTACTTTTGTTTTACTGCAATTTTGATGAGGACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCCATTTAGATTTTTGAACCCCTTTGTTTCTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAAAAAAAAAC..........................................................................................................................................................TCGCCTGCAGCCCGGGGGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250776" ref_strand="-" ref_description="SGN-E250776 [cLEG-7-J20]">
      <seq>atatgttcctcgtcatagttttgtaggataacataccagatgtttcacttttgcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgaaaaaaaaaaaaaaaaaactcaagactagttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71377" stop="7912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71072" g_stop="71017" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="109" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="167" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69336" g_stop="68949" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="555" r_length="388" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68948" i_stop="68373" i_length="576">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68372" g_stop="68341" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="587" r_length="32" r_score="0.594"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E250776" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250776" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71072" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68949"/>
          <exon e_start="68372" e_stop="68341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTGAATATTCTGTTCTGTTTAAAAACTACTAACCTTTTGTGTTAGCGAATTTAGTTTTAGAGGTAATTTGGGATAAAAACGTGTGTAAGGAAGTCTAGTTATATTTTAAGTAGTACAATATATTTGGTTTAGAGGTTAAAATCGTATATCAAACCCATAATTTTGAATGTCAACACTACTGGTATTTTGTCCCTTTGTGCGTAAAAGATAATTGAAATAACATCTCAAGCTCTTGTGAAATTCAAATATATTTTATATTTAATTATATGTTCAAGCTCTCTATTTTGATATAATTACTCTGGCTTTCTATGTGATAATTTACTCTTGCACTGCTGCTGGTAATCACATCGCCGACTAGTTTTGTGTAATTGTTGCTTCAGAAGCTACTTCCCCTGAAATTTTGGGTGCAAATCAACCAACATTTAGTGAAATTAGAAAATGCAATAAGGTGGTTCTTGCTCTTTGAGCTTCAAAAGTAAAACCAAACCAATTCCCCTTCCTCAATACAAAGAAAGTTTTGAACAGAAAACGAAACTCAACCATTGTTAAAA</genome_strand>
        <mrna_strand>CTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAACTCAAGACTAGTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239147" ref_strand="-" ref_description="SGN-E239147 [cLEL-9-G10](-)">
      <seq>ttttttttttttttttttgggtttttttttttttttttcagagaaacaaaagggtccaaaaatctaaatagaagcacattcattgaaatgttgcaatgtatcagcaaattactagtctcaaacaaagaaccattcagtatccactgttctcatcaaaattgcagtaaaacaaaagtcctagttttactagaaaccatgtagacagatttggatgaatcacttcaatggaatgaaccttgaagagggagtagcaccaataccgggcctaccgtgcttgacaggcttgtttgagatggagaactcagctaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="7910" stop="69483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68405" g_stop="68432" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.464"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68433" i_stop="68899" i_length="467">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68900" g_stop="69183" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="312" r_length="284" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E239147" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239147" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68405" e_stop="68432"/>
          <exon e_start="68900" e_stop="69183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTTTACTTTTGAAGCTCAAAGAGCAAGAACCACCTTATTGCATTTTCTAATTTCACTAAATGTTGGTTGATTTGCACCCAAAATTTCAGGGGAAGTAGCTTCTGAAGCAACAATTACACAAAACTAGTCGGCGATGTGATTACCAGCAGCAGTGCAAGAGTAAATTATCACATAGAAAGCCAGAGTAATTATATCAAAATAGAGAGCTTGAACATATAATTAAATATAAAATATATTTGAATTTCACAAGAGCTTGAGATGTTATTTCAATTATCTTTTACGCACAAAGGGACAAAATACCAGTAGTGTTGACATTCAAAATTATGGGTTTGATATACGATTTTAACCTCTAAACCAAATATATTGTACTACTTAAAATATAACTAGACTTCCTTACACACGTTTTTATCCCAAATTACCTCTAAAACTAAATTCGCTAACACAAAAGGTTAGTAGTTTTTAAACAGAACAGAATATTCAGACACAAAGTAACCAATTTCAGAGAAACAAAAAGGTACAAAAATCTAAATAGAAGCACAATCATTGAAATGTTGCAATGTATCAGCAAATTACTAGTCTCAAACAAAGAACCATTCAGTATCCACTGTTCTCATCAAAATTGCAGTAAAACAAAAGTACTAGTATTACTAGAAACCATGTAGACAGATTTGGATGAATCACTTCAATGGAATGAACCTTGAAGAGTGAGTAGCACCAATACCGGGCCTACCGTGCTTGACAGGCTTGTATGAGATGGAGAACTCAGCTAAGTA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTGGGTTTTTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTCAGAGAAACAAAAGGGTCCAAAAATCTAAATAGAAGCACATTCATTGAAATGTTGCAATGTATCAGCAAATTACTAGTCTCAAACAAAGAACCATTCAGTATCCACTGTTCTCATCAAAATTGCAGTAAAACAAAAGTCCTAGTTTTACTAGAAACCATGTAGACAGATTTGGATGAATCACTTCAATGGAATGAACCTTGAAGAGGGAGTAGCACCAATACCGGGCCTACCGTGCTTGACAGGCTTGTTTGAGATGGAGAACTCAGCTAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352076" ref_strand="+" ref_description="SGN-E352076 [cTOS-13-B20]">
      <seq>aacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagatttttgtacctttttgtttctctgaaattggttactttgtgtctgaatattctgttctgtttaaaaactactaaccttttgtgttagcgaatttagttttagaggtaatttgggataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="69582" stop="68513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69282" g_stop="68808" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E352076" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69282" e_stop="68808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTGAATATTCTGTTCTGTTTAAAAACTACTAACCTTTTGTGTTAGCGAATTTAGTTTTAGAGGTAATTTGGGATAAAAACGTGT</genome_strand>
        <mrna_strand>AACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTGAATATTCTGTTCTGTTTAAAAACTACTAACCTTTTGTGTTAGCGAATTTAGTTTTAGAGGTAATTTGGGATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735219" ref_strand="+" ref_description="SGN-E735219 [LB14DA06]">
      <seq>ccataccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagttgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagatttttgtacctttttgtttctctgaaattggttactttgtgtctgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71626" stop="68585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71325" g_stop="71264" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="208" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="266" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68880" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="723" r_length="457" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E735219" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71325" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTGAATATTCTG</genome_strand>
        <mrna_strand>CCATACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGTTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733291" ref_strand="+" ref_description="SGN-E733291 [LB04BH11]">
      <seq>cgctaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagatttttgtacctttttgtttctctgaaattggttactttgtgtctgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71627" stop="68585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71327" g_stop="71264" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="210" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="268" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68888" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="717" r_length="449" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="718" polyA_stop="733"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E733291" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71327" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTGA</genome_strand>
        <mrna_strand>CGCTAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327015" ref_strand="+" ref_description="SGN-E327015 [cTOC-18-G18]">
      <seq>ccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactctttcaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatgggttcttgtttgagactagtaatttgctgatacattgcaacattttcatggatgtgcttctatttagatttttgtacctttttgtttccctgaaattgggtactttgtgtctgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71614" stop="68585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71314" g_stop="71264" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="197" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="255" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68888" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="704" r_length="449" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="705" polyA_stop="716"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E327015" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71314" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTGA</genome_strand>
        <mrna_strand>CCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTTCAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGGTTCTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTTCATGGATGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCCCTGAAATTGGGTACTTTGTGTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690480" ref_strand="+" ref_description="SGN-E690480 [LH_Ea03J22]">
      <seq>ataggagcttagcagccaattcattctcgaagccatggcggaagttgaagctgatgtttctgccggacagccaaggaagaggacgttcaagaagttcagctacagaggagtggatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggattgaagaggaagcctatggctttgatcaaaaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgttattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggagctactcactcttcaaggttcattccattgaagtgattcagccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgctttatttagatttttgtacctttttgtttttctgaaattggttactttgtgtctgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71600" stop="68585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71300" g_stop="71264" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="183" r_length="146" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="241" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68888" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="689" r_length="448" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="690" polyA_stop="700"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E690480" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71300" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTGA</genome_strand>
        <mrna_strand>ATAGGAGCTTAGCAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTTCTGCCGGACAGCCAAGGAAGAGGACGTTCAAGAAGTTCAGCTACAGAGGAGTGGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGATTGAAGAGGAAGCCTATGGCTTTGATCAAAAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTTATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGAGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCAGCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTT-TATTTAGATTTTTGTACCTTTTTGTTTTTCTGAAATTGGTTACTTTGTGTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711512" ref_strand="+" ref_description="SGN-E711512 [FB02AH01]">
      <seq>cgatccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagatttttgtacctttttgtttctctgaaattggttactttgtgtctganaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71587" stop="68585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71289" g_stop="71264" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="172" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="230" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68888" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="679" r_length="449" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="681" polyA_stop="699"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E711512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71289" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTGA</genome_strand>
        <mrna_strand>CGATCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715770" ref_strand="+" ref_description="SGN-E715770 [FB15AH08]">
      <seq>cataaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacgatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagatttttgtacctttttgtttctctgaaattggttactttgtgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71625" stop="68589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71325" g_stop="71264" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="208" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="266" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68889" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="714" r_length="448" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E715770" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71325" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTG</genome_strand>
        <mrna_strand>CATAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACGATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694320" ref_strand="+" ref_description="SGN-E694320 [LH_Ea03J22](-)">
      <seq>ataggagcttagcagccaattcattctcgaagccatggcggaagttgaagctgatgtttctgccggacagccaaggaagaggacgttcaagaagttcagctacagaggagtggatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggattgaagaggaagcctatggctttgatcaaaaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgttattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggagctactcactcttcaaggttcattccattgaagtgattcagccaaatctgtctacatggtttttagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaagatttcaatgattgtgctttatttagatttttgtccctaatggtttttctgaaattggttactttgtgtcgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71600" stop="68585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71300" g_stop="71264" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="183" r_length="146" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="241" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68894" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="683" r_length="442" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="705"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E694320" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71300" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGT</genome_strand>
        <mrna_strand>ATAGGAGCTTAGCAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTTCTGCCGGACAGCCAAGGAAGAGGACGTTCAAGAAGTTCAGCTACAGAGGAGTGGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGATTGAAGAGGAAGCCTATGGCTTTGATCAAAAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTTATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGAGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCAGCCAAATCTGTCTACATGGTTTTTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAAGATTTCAATGATTGTGCTT-TATTTAGATTTTTGTCCCTAATGGTTTTTCTGAAATTGGTTACTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308927" ref_strand="+" ref_description="SGN-E308927 [cLEY-23-A23]">
      <seq>ttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagatttttgtacctttttgtttctctgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71604" stop="68607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71304" g_stop="71264" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="187" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="245" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68904" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="678" r_length="433" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E308927" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71304" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTG</genome_strand>
        <mrna_strand>TTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E217305" ref_strand="+" ref_description="SGN-E217305 [cLEL-21-G11](-)">
      <seq>ggttgtgagaacacatttaggaacatgatcattgttcctgagatgattgcaagtgtcattggaatctacaatggaaaaactttcaatcaaattaaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagatttttgtacctttttgtttctctgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="69604" stop="68607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69304" g_stop="68905" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E217305" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69304" e_stop="68905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATT</genome_strand>
        <mrna_strand>GGTTGTGAGAACACATTT-AGGAACATGATCATTGTTCCTGAGATGATTGCAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTAAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E217391" ref_strand="+" ref_description="SGN-E217391 [cLEL-21-G11](-)">
      <seq>aacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcttgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagatttttgtacctaaatgtttctctgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="69582" stop="68623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69282" g_stop="68905" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E217391" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69282" e_stop="68905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATT</genome_strand>
        <mrna_strand>AACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCTTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTAAATGTTTCTCTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724438" ref_strand="+" ref_description="SGN-E724438 [FC24AE02]">
      <seq>gggcgattggcggccaatcggccgaattgctttcatcgtcgtccccaaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagatttttgtacctttttgtttctctgannaaaaaannnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71643" stop="68609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71341" g_stop="71264" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="107" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="253" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="311" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68908" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="740" r_length="429" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="752" polyA_stop="783"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E724438" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71341" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCATCGTCGTCCCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAA</genome_strand>
        <mrna_strand>CTTTCATCGTCGTCCCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715484" ref_strand="+" ref_description="SGN-E715484 [FB14BF09]">
      <seq>caaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagatttttgtacctttttgtttctctgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71625" stop="68607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71325" g_stop="71264" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="208" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="266" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68908" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="695" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="696" polyA_stop="707"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E715484" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71325" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAA</genome_strand>
        <mrna_strand>CAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712220" ref_strand="+" ref_description="SGN-E712220 [FB04BA04]">
      <seq>gcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagatttttgtacctttttgtttctctgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71352" stop="68607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71052" g_stop="71017" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="94" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69336" g_stop="68908" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="523" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="524" polyA_stop="535"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E712220" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71052" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAA</genome_strand>
        <mrna_strand>GCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714371" ref_strand="+" ref_description="SGN-E714371 [FB11BA11]">
      <seq>cctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagatttttgtacctttttgtttctctgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="70826" stop="68607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="69" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69336" g_stop="68908" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="498" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="499" polyA_stop="508"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E714371" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAA</genome_strand>
        <mrna_strand>GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345254" ref_strand="+" ref_description="SGN-E345254 [cTOF-13-B17]">
      <seq>caaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagatttttgtacctttttgtttctctgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="69637" stop="68607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69343" g_stop="68908" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E345254" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69343" e_stop="68908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAA</genome_strand>
        <mrna_strand>CAAGGCGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236866" ref_strand="+" ref_description="SGN-E236866 [cLEL-7-A15](-)">
      <seq>agaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttccaatcaaattgaggtcaagcctgagatgattagtcactactttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagatttttgtacctttttgtttctctgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="69583" stop="68607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69284" g_stop="68908" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="380" polyA_stop="396"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E236866" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69284" e_stop="68908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTT-CAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTAC-TTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAA</genome_strand>
        <mrna_strand>AGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236768" ref_strand="+" ref_description="SGN-E236768 [cLEL-7-A15](-)">
      <seq>catgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagatttttgtacctttttgtttctctgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="69580" stop="68607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69280" g_stop="68908" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="374" polyA_stop="390"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E236768" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69280" e_stop="68908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAA</genome_strand>
        <mrna_strand>CATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354579" ref_strand="+" ref_description="SGN-E354579 [cTOS-17-O8]">
      <seq>tcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagatttttgtacctttttgtttctctgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="69548" stop="68607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69248" g_stop="68908" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="354"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E354579" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69248" e_stop="68908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAA</genome_strand>
        <mrna_strand>TCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715421" ref_strand="+" ref_description="SGN-E715421 [FB14AH10]">
      <seq>agtcacttccataggagcttagaagccaattcattctcgaagccgtggcggaagttgaagctgatgttgcgaccggacggccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcggcctcgcacaaggttccagaggggtttgaagaggaagcctatggctttgatcatgaagctgcacaaggggaaacgtgaggccccacctggtgagaagccacaggttgtgaaaacacatttgaggaacatgatcgttgttcctgagatgattggaagtgtcattggaatctactatggaagaactttcagtccaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcagcggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagatttttgtaccttttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71610" stop="68620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71310" g_stop="71264" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="193" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="251" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68917" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="672" r_length="421" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E715421" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71310" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCA-CGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGT</genome_strand>
        <mrna_strand>AGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCGTG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACGGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGGCCTCGCACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCATGAAGCTGCACAAGGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCACAGGTTGTGAAAACACATTTGAGGAACATGATCGTTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACTATGGAAGAACTTTCAGTCCAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCAGCGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355356" ref_strand="+" ref_description="SGN-E355356 [cTOS-18-N4]">
      <seq>gcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagatttttgtaccttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71352" stop="68622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71052" g_stop="71017" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="94" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69336" g_stop="68922" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="509" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E355356" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71052" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTT</genome_strand>
        <mrna_strand>GCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732867" ref_strand="+" ref_description="SGN-E732867 [LB03BD11]">
      <seq>cataaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggccagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagatttttgtacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71625" stop="68623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71325" g_stop="71264" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="208" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="266" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68923" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="680" r_length="414" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E732867" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71325" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCT</genome_strand>
        <mrna_strand>CATAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGCCAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347381" ref_strand="+" ref_description="SGN-E347381 [cTOF-33-J14]">
      <seq>ccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagatttttgtacctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71614" stop="68623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71314" g_stop="71264" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="197" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="255" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68923" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="669" r_length="414" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="670" polyA_stop="680"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E347381" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71314" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCT</genome_strand>
        <mrna_strand>CCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E692866" ref_strand="+" ref_description="SGN-E692866 [LH_Ea09N08]">
      <seq>taagcagtcacttccataggagcttagcagccaattcattctcgaagccatggcggaagttgaagctgatgtttctgccggacagccaaggaagaggacgttcaagaagttcagctacagaggagtggatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggattgaagaggaagcctatggctttgatcaaaaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgttattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggagctactcactcttcaaggttcattccattgaagtgattcagccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgctttatttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71612" stop="68634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71315" g_stop="71264" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="198" r_length="146" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="256" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68928" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="664" r_length="408" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E692866" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71315" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTG</genome_strand>
        <mrna_strand>TAAGCAGTCACTTCCATAGGAGCTTAGCAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTTCTGCCGGACAGCCAAGGAAGAGGACGTTCAAGAAGTTCAGCTACAGAGGAGTGGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGATTGAAGAGGAAGCCTATGGCTTTGATCAAAAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTTATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGAGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCAGCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTT-TATTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342193" ref_strand="+" ref_description="SGN-E342193 [cTOF-10-F24]">
      <seq>ccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagaatttttgtacctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71614" stop="68623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71314" g_stop="71264" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="197" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="255" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68929" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="663" r_length="408" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="671" polyA_stop="683"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E342193" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71314" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTT</genome_strand>
        <mrna_strand>CCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352816" ref_strand="+" ref_description="SGN-E352816 [cTOS-11-M13]">
      <seq>ctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71400" stop="68634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71100" g_stop="71017" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="142" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69336" g_stop="68929" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="550" r_length="408" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E352816" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71100" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTT</genome_strand>
        <mrna_strand>CTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279791" ref_strand="+" ref_description="SGN-E279791 [cLER-8-C22]">
      <seq>gatgtgcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagatttttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71357" stop="68626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71057" g_stop="71017" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="99" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69336" g_stop="68929" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="507" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="510" polyA_stop="519"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E279791" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71057" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTT</genome_strand>
        <mrna_strand>GATGTGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719000" ref_strand="+" ref_description="SGN-E719000 [FC06BH05]">
      <seq>tcggccgattatcgtcgtccccaaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71639" stop="68634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71346" g_stop="71264" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="229" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="287" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68935" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="689" r_length="402" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="690" polyA_stop="719"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E719000" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71346" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCCTTTCATCGTCGTCCCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAG</genome_strand>
        <mrna_strand>TCGGCCGATTATCGTCGTCCCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E692451" ref_strand="+" ref_description="SGN-E692451 [LH_Ea08M01]">
      <seq>cgttaaccctagccgcagtcacttccataggagcttagcagccaattcattctcgaagccatggcggaagttgaagctgatgtttctgccggacagccaaggaagaggacgttcaagaagttcagctacagaggagtggatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggattgaagaggaagcctatggctttgatcaaaaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgttattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggagctactcactcttcaaggttcattccattgaagtgattcagccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgctttatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71622" stop="68634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71326" g_stop="71264" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="209" r_length="146" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="267" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68935" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="668" r_length="401" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E692451" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71326" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAG</genome_strand>
        <mrna_strand>CGTTAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGCAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTTCTGCCGGACAGCCAAGGAAGAGGACGTTCAAGAAGTTCAGCTACAGAGGAGTGGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGATTGAAGAGGAAGCCTATGGCTTTGATCAAAAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTTATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGAGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCAGCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTT-TATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711897" ref_strand="+" ref_description="SGN-E711897 [FB03BC07]">
      <seq>cataaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttannnnaanaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71625" stop="68636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71325" g_stop="71264" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="208" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="266" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68935" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="668" r_length="402" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="672" polyA_stop="690"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E711897" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71325" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAG</genome_strand>
        <mrna_strand>CATAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346723" ref_strand="+" ref_description="SGN-E346723 [cTOF-28-P17]">
      <seq>caaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71625" stop="68634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71325" g_stop="71264" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="208" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="266" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68935" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="668" r_length="402" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="678"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E346723" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71325" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAG</genome_strand>
        <mrna_strand>CAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715018" ref_strand="+" ref_description="SGN-E715018 [FB13AD06]">
      <seq>gttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71406" stop="68634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71106" g_stop="71017" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="148" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69336" g_stop="68935" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="550" r_length="402" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="551" polyA_stop="568"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E715018" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71106" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAG</genome_strand>
        <mrna_strand>GTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352031" ref_strand="+" ref_description="SGN-E352031 [cTOS-13-O10]">
      <seq>ctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71400" stop="68634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71100" g_stop="71017" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="142" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69336" g_stop="68935" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="544" r_length="402" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E352031" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71100" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAG</genome_strand>
        <mrna_strand>CTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356738" ref_strand="+" ref_description="SGN-E356738 [cTOS-21-M16]">
      <seq>ctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71400" stop="68634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71100" g_stop="71017" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="142" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69336" g_stop="68935" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="544" r_length="402" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E356738" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71100" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAG</genome_strand>
        <mrna_strand>CTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712012" ref_strand="+" ref_description="SGN-E712012 [FB03CE11]">
      <seq>gatcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71354" stop="68634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71054" g_stop="71017" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="96" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69336" g_stop="68935" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="498" r_length="402" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="499" polyA_stop="513"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E712012" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71054" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAG</genome_strand>
        <mrna_strand>GATCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712308" ref_strand="+" ref_description="SGN-E712308 [FB04CA01]">
      <seq>agaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="70807" stop="68634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70507" g_stop="70467" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69336" g_stop="68935" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="443" r_length="402" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="444" polyA_stop="471"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E712308" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70507" e_stop="70467"/>
          <exon e_start="69336" e_stop="68935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAG</genome_strand>
        <mrna_strand>AGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E220847" ref_strand="+" ref_description="SGN-E220847 [cLEL-22-F4](-)">
      <seq>agcctatggctttgatcaaaaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccaaaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="70801" stop="68634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70501" g_stop="70467" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69336" g_stop="68935" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="437" r_length="402" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="438" polyA_stop="460"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E220847" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70501" e_stop="70467"/>
          <exon e_start="69336" e_stop="68935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAG</genome_strand>
        <mrna_strand>AGCCTATGGCTTTGATCAAAAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAAAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E219167" ref_strand="+" ref_description="SGN-E219167 [cLEL-11-O9](-)">
      <seq>ggttgtgagaacacatttaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttacccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="69604" stop="68636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69304" g_stop="68935" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="372" polyA_stop="389"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E219167" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69304" e_stop="68935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAG</genome_strand>
        <mrna_strand>GGTTGTGAGAACACATTT-AGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E220956" ref_strand="+" ref_description="SGN-E220956 [cLEL-22-F4](-)">
      <seq>gtgagaacacatttgaggaacatgatcattgttcctgagatgattgaaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttccatgattgtgcttctatttnnaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="69600" stop="68637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69300" g_stop="68935" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="367" polyA_stop="389"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E220956" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69300" e_stop="68935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAG</genome_strand>
        <mrna_strand>GTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGAAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCCATGATTGTGCTTCTATTTNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235466" ref_strand="+" ref_description="SGN-E235466 [cLED-11-M9]">
      <seq>aacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttaaaaaacaaaaaataaaaaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="69582" stop="68634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69282" g_stop="68935" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="349" polyA_stop="359"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E235466" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69282" e_stop="68935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAG</genome_strand>
        <mrna_strand>AACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311248" ref_strand="+" ref_description="SGN-E311248 [cLEZ-16-J1]">
      <seq>cagacacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattctgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71611" stop="68637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71311" g_stop="71264" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="194" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="252" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68937" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="652" r_length="400" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E311248" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71311" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTT</genome_strand>
        <mrna_strand>CAGACACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTCTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351009" ref_strand="+" ref_description="SGN-E351009 [cTOS-6-K1]">
      <seq>gcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71352" stop="68637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71052" g_stop="71017" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="94" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69336" g_stop="68937" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="494" r_length="400" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E351009" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71052" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTT</genome_strand>
        <mrna_strand>GCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732720" ref_strand="+" ref_description="SGN-E732720 [LB02DG09]">
      <seq>ccataaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71626" stop="68638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71326" g_stop="71264" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="209" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="267" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68938" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="666" r_length="399" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E732720" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71326" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATT</genome_strand>
        <mrna_strand>CCATAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E696706" ref_strand="+" ref_description="SGN-E696706 [LH_Ea09N08](-)">
      <seq>gccgcagtcacttccataggagcttagcagccaattcattctcgaagccatggcggaagttgaagctgatgtttctgccggacagccaaggaagaggacgttcaagaagttcagctacagaggagtggatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggattgaagaggaagcctatggctttgatcaaaaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgttattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggagctactcactcttcaaggttcattccattgaagtgattcagccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctaatgcattgcaacatttcaatgattgtgctttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71615" stop="68634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71315" g_stop="71264" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="198" r_length="146" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="256" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68941" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="652" r_length="396" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="654" polyA_stop="666"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E696706" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71315" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCT</genome_strand>
        <mrna_strand>GCCGCAGTCACTTCCATAGGAGCTTAGCAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTTCTGCCGGACAGCCAAGGAAGAGGACGTTCAAGAAGTTCAGCTACAGAGGAGTGGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGATTGAAGAGGAAGCCTATGGCTTTGATCAAAAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTTATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGAGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCAGCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTAATGCATTGCAACATTTCAATGATTGTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E696291" ref_strand="+" ref_description="SGN-E696291 [LH_Ea08M01](-)">
      <seq>aaaccctagccgcagtcacttccataggagcttagcagccaattcattctcgaagccatggcggaagttgaagctgatgtttctgccggacagccaaggaagaggacgttcaagaagttcagctacagaggagtggatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggattgaagaggaagcctatggctttgatcaaaaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgttattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggagctactcactcttcaaggttcattccattgaagtgattcagccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatagattgcaacatttcaatgattgtgctttattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71623" stop="68634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71323" g_stop="71264" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="206" r_length="146" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="264" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68943" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="658" r_length="394" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="663" polyA_stop="676"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E696291" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71323" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTT</genome_strand>
        <mrna_strand>AAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGCAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTTCTGCCGGACAGCCAAGGAAGAGGACGTTCAAGAAGTTCAGCTACAGAGGAGTGGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGATTGAAGAGGAAGCCTATGGCTTTGATCAAAAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTTATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGAGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCAGCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATAGATTGCAACATTTCAATGATTGTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344907" ref_strand="+" ref_description="SGN-E344907 [cTOF-21-B18]">
      <seq>ctacccgcagtcactctcattggagcttagaagccaattcattctctaagccatggcggtagttgaagctgatgttgcgaccggacagacatggaagagaacattcaagaagttcatctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctctttcttacagaatgttccagaggggttagaagaggaagcctatggctttgatcaagaagctgctcaaggcgaaacgtgaggcctcacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgctcctgagatgattggaagtgtcattggaatctacaatggataaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatgtcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatacaaatctgtctacatgggtactagtaatactagtacttctgttttactgccattttgatgagaacagctgatactgaatggatctttgtttcagactagtaatatgctgatacattggaacatttcaatgattgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71618" stop="68645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71318" g_stop="71264" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="201" r_length="146" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="259" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68945" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="651" r_length="392" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E344907" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71318" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGC</genome_strand>
        <mrna_strand>CTACCCGCAGTCACTCTCATTGGAGCTTAGAAGCCAATTCATTCTCTAAGCCATG.....................................................................................................GCGGTAGTTGAAGCTGATGTTGCGACCGGACAGACATGGAAGAGAACATTCAAGAAGTTCATCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCTTTCTTACAGAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTAGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCTCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCTCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGCTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGATAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATGTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATACAAATCTGTCTACATGGGTACTAGTAATACTAGTACTTCTGTTTTACTGCCATTTTGATGAGAACAGCTGATACTGAATGGATCTTTGTTTCAGACTAGTAATATGCTGATACATTGGAACATTTCAATGATTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340638" ref_strand="-" ref_description="SGN-E340638 [cTOF-1-M4]">
      <seq>tagatctggattctcttcttgacatgtctaatgatgagcttgttaagcttacccctgctggtcatcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatcccaatctgtctacatggtttctagtaaaactagaacttttgttttactgcaattttgatgagaccagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgactgtggttcgagttaaaaaaaaaaaaaagaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71389" stop="68634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71089" g_stop="71017" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="131" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69336" g_stop="68947" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="521" r_length="390" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="550"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E340638" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340638" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71089" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGT</genome_strand>
        <mrna_strand>TAGATCTGGATTCTCTTCTTGACATGTCTAATGATGAGCTTGTTAAGCTTACCCCTGCTGGTCATCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCCAATCTGTCTACATGGTTTCTAGTAAAACTAGAACTTTTGTTTTACTGCAATTTTGATGAGACCAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215962" ref_strand="+" ref_description="SGN-E215962 [cLEL-13-D18](-)">
      <seq>ccacctggtgagaagccataggttgtgagaacacatttgaggaacatgatcactgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacaataaaacatttcaatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="69624" stop="68651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69324" g_stop="68948" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E215962" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69324" e_stop="68948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTG</genome_strand>
        <mrna_strand>CCACCTGGTGAGAAGCCATAGGTTGTGAGAACACATTTGAGGAACATGATCACTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACAATAAAACATTTCAATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340936" ref_strand="+" ref_description="SGN-E340936 [cTOF-5-E12]">
      <seq>cccaaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagaactagtatttgctgatacattgcaacatttcaatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71627" stop="68649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71327" g_stop="71264" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="210" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="268" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68949" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="656" r_length="388" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E340936" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71327" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAG-ACTAGTAATTTGCTGATACATTGCAACATTTCAATGATT</genome_strand>
        <mrna_strand>CCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGAACTAGT-ATTTGCTGATACATTGCAACATTTCAATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351090" ref_strand="+" ref_description="SGN-E351090 [cTOS-6-L15]">
      <seq>accctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatgggtctttgtttgagactagtaatttgctgatacattgcaacatttcaatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71621" stop="68649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71321" g_stop="71264" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="204" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="262" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68949" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="650" r_length="388" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E351090" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71321" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATT</genome_strand>
        <mrna_strand>ACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGGTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248474" ref_strand="+" ref_description="SGN-E248474 [cLEF-59-F14]">
      <seq>ttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71604" stop="68651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71304" g_stop="71264" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="187" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="245" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68951" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="631" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E248474" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71304" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGA</genome_strand>
        <mrna_strand>TTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732376" ref_strand="+" ref_description="SGN-E732376 [LB02AA06]">
      <seq>ccaaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71626" stop="68651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71326" g_stop="71264" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="209" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="267" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68952" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="652" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="653" polyA_stop="665"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E732376" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71326" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATG</genome_strand>
        <mrna_strand>CCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323000" ref_strand="+" ref_description="SGN-E323000 [cTOB-30-P21]">
      <seq>aaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71624" stop="68651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71324" g_stop="71264" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="207" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="265" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68952" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="650" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="662"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E323000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71324" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATG</genome_strand>
        <mrna_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341590" ref_strand="+" ref_description="SGN-E341590 [cTOE-23-A5]">
      <seq>aaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71624" stop="68652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71324" g_stop="71264" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="207" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="265" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68952" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="650" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E341590" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71324" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATG</genome_strand>
        <mrna_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711460" ref_strand="+" ref_description="SGN-E711460 [FB02AC08]">
      <seq>cccgtaggcacttccataggagcttagaagccaattcattctcccagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatganaaaaaaaaaaaaaaaaaaaaaaaaaaaaannccctggggggggggccgggccccatttccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71614" stop="68651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71315" g_stop="71264" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="198" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="256" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68952" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="641" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="673"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E711460" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71315" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATG</genome_strand>
        <mrna_strand>CCCGTAGGCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCCCAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265353" ref_strand="-" ref_description="SGN-E265353 [cLEI-9-L12]">
      <seq>agtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccacaggggtttgaagaggaagcctatggctttgatcaagatgctgcgcaaggcgaaacgtgtggccccacctggtgagaagccagaggttgtgagtacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaacactttcaatcaaattgaggtcaagcctgaaatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgtttcactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71391" stop="68651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71091" g_stop="71017" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="133" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69336" g_stop="68952" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="518" r_length="385" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="531"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E265353" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265353" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71091" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATG</genome_strand>
        <mrna_strand>AGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCACAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGATGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGTGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGTACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAACACTTTCAATCAAATTGAGGTCAAGCCTGAAATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTCACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E216612" ref_strand="+" ref_description="SGN-E216612 [cLEL-1-C3](-)">
      <seq>catgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71367" stop="68651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71067" g_stop="71017" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="109" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69336" g_stop="68952" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="494" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="512"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E216612" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71067" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATG</genome_strand>
        <mrna_strand>CATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238729" ref_strand="+" ref_description="SGN-E238729 [cLEL-9-C8](-)">
      <seq>ggttgtgagaacacattttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="69604" stop="68651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69304" g_stop="68952" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="355" polyA_stop="371"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E238729" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69304" e_stop="68952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTGAGAACACATT-TGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATG</genome_strand>
        <mrna_strand>GGTTGTGAGAACACATTTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238929" ref_strand="+" ref_description="SGN-E238929 [cLEL-9-C8](-)">
      <seq>gaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttccaacaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="69583" stop="68651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69283" g_stop="68952" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="333" polyA_stop="349"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E238929" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69283" e_stop="68952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATG</genome_strand>
        <mrna_strand>GAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCCAACAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E224446" ref_strand="+" ref_description="SGN-E224446 [cLEL-27-D5](-)">
      <seq>tcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacaatgcaacctttcaatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="69548" stop="68651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69248" g_stop="68952" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="298" polyA_stop="314"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E224446" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69248" e_stop="68952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATG</genome_strand>
        <mrna_strand>TCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACAATGCAACCTTTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283531" ref_strand="-" ref_description="SGN-E283531 [cLER-12-B13]">
      <seq>gatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcttgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="70788" stop="68654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70488" g_stop="70467" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69336" g_stop="68954" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="405" r_length="383" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E283531" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283531" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70488" e_stop="70467"/>
          <exon e_start="69336" e_stop="68954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAA</genome_strand>
        <mrna_strand>GATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCTTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200008" ref_strand="+" ref_description="SGN-E200008 [cLEB-9-G5]">
      <seq>gcacgagcaaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71625" stop="68654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71332" g_stop="71264" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="215" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="273" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68955" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="655" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="672"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E200008" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71332" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCCCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCA</genome_strand>
        <mrna_strand>GCACGAGCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715718" ref_strand="+" ref_description="SGN-E715718 [FB15AC10]">
      <seq>cctaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71626" stop="68654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71326" g_stop="71264" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="209" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="267" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68955" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="649" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E715718" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71326" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCA</genome_strand>
        <mrna_strand>CCTAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E552696" ref_strand="+" ref_description="SGN-E552696 [cTSB-4-L5]">
      <seq>ccaaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcanannanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71626" stop="68655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71326" g_stop="71264" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="209" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="267" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68955" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="649" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="654" polyA_stop="693"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E552696" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71326" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCA</genome_strand>
        <mrna_strand>CCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735143" ref_strand="+" ref_description="SGN-E735143 [LB14CC02]">
      <seq>cataaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71625" stop="68654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71325" g_stop="71264" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="208" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="265" r_length="57" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68955" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="647" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="648" polyA_stop="657"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E735143" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71325" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCA</genome_strand>
        <mrna_strand>CATAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAG-CTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E217533" ref_strand="+" ref_description="SGN-E217533 [cLEL-21-L22](-)">
      <seq>catgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71367" stop="68654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71067" g_stop="71017" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="109" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69336" g_stop="68955" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="491" r_length="382" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="509"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E217533" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71067" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCA</genome_strand>
        <mrna_strand>CATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227396" ref_strand="+" ref_description="SGN-E227396 [cLEL-30-G10](-)">
      <seq>gatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtactttgctgatacattgcaacatttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="70788" stop="68654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70488" g_stop="70467" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69336" g_stop="68955" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="404" r_length="382" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="405" polyA_stop="420"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E227396" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70488" e_stop="70467"/>
          <exon e_start="69336" e_stop="68955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCA</genome_strand>
        <mrna_strand>GATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTACTTTGCTGATACATTGCAACATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E287483" ref_strand="+" ref_description="SGN-E287483 [cLES-9-A22]">
      <seq>tggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgactggaagtgccattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctacatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgctctactgcaattctgatgagaacagtggatactgaatggatctttgttagagactaggaatttgctgatacattgcaacatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="69619" stop="68655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69319" g_stop="68955" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E287483" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69319" e_stop="68955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCA</genome_strand>
        <mrna_strand>TGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGACTGGAAGTGCCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTACATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGCTCTACTGCAATTCTGATGAGAACAGTGGATACTGAATGGATCTTTGTTAGAGACTAGGAATTTGCTGATACATTGCAACATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E230038" ref_strand="+" ref_description="SGN-E230038 [cLEL-33-I19](-)">
      <seq>ggcacgagggaacatgatcattgttcctgagatgattgaaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="69586" stop="68654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69293" g_stop="68955" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="339" polyA_stop="354"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E230038" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69293" e_stop="68955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCA</genome_strand>
        <mrna_strand>GGCACGAG-GGAACATGATCATTGTTCCTGAGATGATTGAAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E221981" ref_strand="+" ref_description="SGN-E221981 [cLEL-10-O19](-)">
      <seq>gaggaacatgatcattgttcttgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="69586" stop="68654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69286" g_stop="68955" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="333" polyA_stop="348"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E221981" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69286" e_stop="68955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCA</genome_strand>
        <mrna_strand>GAGGAACATGATCATTGTTCTTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E224802" ref_strand="+" ref_description="SGN-E224802 [cLEL-27-D5](-)">
      <seq>aacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="69582" stop="68651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69282" g_stop="68955" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="329" polyA_stop="348"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E224802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69282" e_stop="68955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCA</genome_strand>
        <mrna_strand>AACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E229896" ref_strand="+" ref_description="SGN-E229896 [cLEL-33-I12](-)">
      <seq>atgatcattgttcctaaaatgattggaagtgtcattggaatctacaaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="69579" stop="68654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69279" g_stop="68955" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="327" polyA_stop="342"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E229896" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69279" e_stop="68955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTAC-AATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCA</genome_strand>
        <mrna_strand>ATGATCATTGTTCCTAAAATGATTGGAAGTGTCATTGGAATCTACAAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292400" ref_strand="+" ref_description="SGN-E292400 [cLET-1-J7]">
      <seq>gaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71459" stop="68656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71159" g_stop="71017" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="201" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69336" g_stop="68956" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="582" r_length="381" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E292400" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71159" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTC</genome_strand>
        <mrna_strand>GAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723000" ref_strand="+" ref_description="SGN-E723000 [FC19AA09]">
      <seq>gggcgattggcggccaatcggccgaattccatggggatccgatggtccccaaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacgtgtctactgatgagcttgttaagctttaccctgctcggcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71636" stop="68657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71330" g_stop="71264" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="111" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="257" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="315" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68957" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="695" r_length="380" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E723000" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71330" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTT</genome_strand>
        <mrna_strand>GTCCCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACGTGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGGCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350496" ref_strand="+" ref_description="SGN-E350496 [cTOS-5-I7]">
      <seq>tcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="70826" stop="68657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="73" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69336" g_stop="68957" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="453" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E350496" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTT</genome_strand>
        <mrna_strand>GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E320928" ref_strand="+" ref_description="SGN-E320928 [cTOB-13-A2]">
      <seq>ctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71618" stop="68659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71318" g_stop="71264" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="201" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="259" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68959" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="637" r_length="378" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E320928" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71318" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACAT</genome_strand>
        <mrna_strand>CTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721253" ref_strand="+" ref_description="SGN-E721253 [FC13AH10]">
      <seq>ggccaaatcggccgaattgctttcatcgtcgtccccaaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcnccnnanaaaaaaaaaaaaaaaaaaaaaanaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71643" stop="68664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71341" g_stop="71264" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="97" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="243" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="301" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68961" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="677" r_length="376" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="680" polyA_stop="703"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E721253" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71341" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCATCGTCGTCCCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAAC</genome_strand>
        <mrna_strand>CTTTCATCGTCGTCCCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCNCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577608" ref_strand="-" ref_description="SGN-E577608 [LE15AF09]">
      <seq>tccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacaaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71603" stop="68660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71303" g_stop="71264" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="186" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="244" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68961" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="620" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="621" polyA_stop="641"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E577608" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577608" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71303" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAAC</genome_strand>
        <mrna_strand>TCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E548758" ref_strand="+" ref_description="SGN-E548758 [TUS-64-C10](-)">
      <seq>cccagtcgctttgtctttcttctgccactagaatttctacttgttttgttacattcttttgctggatttatgtggcagtattgtttcttttcttgtacataatagtctatgtgaactagtttattgtgatggtgaaattttactactatagttttttgggaaggaggaaaggccttctgatgttcaaatcatataatcagaatgccactttcctcatgcaactacctctccctacagaaataaacaggatttaatgcttgcacccagtgtttcatggtttgcaagtttggcttcgctgtaacatcgtaaacatcattatatgttttatattattaccaattttttgtatatgtatgtctttccattgatgtttttcatattcaaacagaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="70024" stop="68654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69724" g_stop="68961" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="764" r_length="764" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="768" polyA_stop="781"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E548758" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69724" e_stop="68961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAAC</genome_strand>
        <mrna_strand>CCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723064" ref_strand="+" ref_description="SGN-E723064 [FC19BA08]">
      <seq>tggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacttttgaggaacatgatcattgttcctgagatgattggaagtgtccttggaatctacaatggaaaaactttcattcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71463" stop="68665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71265" g_stop="71264" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="148" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="206" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68965" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="578" r_length="372" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E723064" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71265" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTG</genome_strand>
        <mrna_strand>TG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACTTTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCCTTGGAATCTACAATGGAAAAACTTTCATTCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353241" ref_strand="+" ref_description="SGN-E353241 [cTOS-14-B22]">
      <seq>tcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatgggttctagtaatactagtactttttgtttactgcaattttgatgagaacagtggatactgaatgggtctttgtttgagactagtaatttgctgatacatttgcacattttcaaaaaaaaagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="70826" stop="68654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="73" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69336" g_stop="68966" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="444" r_length="371" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="456" polyA_stop="476"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E353241" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATT</genome_strand>
        <mrna_strand>GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGGTTCTAGTAATACTAGTACTTTTTGTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGGTCTTTGTTTGAGACTAGTAATTTGCTGATACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E230755" ref_strand="+" ref_description="SGN-E230755 [cLEL-35-G10](-)">
      <seq>cccacctggtagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgataaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="69625" stop="68668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69325" g_stop="68969" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="357" polyA_stop="376"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E230755" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69325" e_stop="68969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATAC</genome_strand>
        <mrna_strand>CCCACCTGGT-AGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279385" ref_strand="+" ref_description="SGN-E279385 [cLER-11-D3]">
      <seq>aaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggnttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71624" stop="68684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71324" g_stop="71264" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="207" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="265" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68984" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="618" r_length="353" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E279385" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71324" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTA</genome_strand>
        <mrna_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGNTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250550" ref_strand="+" ref_description="SGN-E250550 [cLEG-21-I21]">
      <seq>ccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctgtgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtggcattggaatctacaatggaaaaacgttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgagttactgcaattttgatgagaacagtggatactgaatggttctttgtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71614" stop="68689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71314" g_stop="71264" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="197" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="255" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68989" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="603" r_length="348" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E250550" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71314" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGA</genome_strand>
        <mrna_strand>CCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTGTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGGCATTGGAATCTACAATGGAAAAACGTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGAGTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E295350" ref_strand="+" ref_description="SGN-E295350 [cLET-23-A12]">
      <seq>cgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71613" stop="68690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71313" g_stop="71264" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="196" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="254" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68990" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="601" r_length="347" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E295350" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71313" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTG</genome_strand>
        <mrna_strand>CGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298697" ref_strand="+" ref_description="SGN-E298697 [cLET-44-J5]">
      <seq>caaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcaccgtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactaggacttttgttttactgcaattttgatgagaacagtggatactgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71625" stop="68702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71325" g_stop="71264" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="208" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="266" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69002" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="601" r_length="335" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E298697" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71325" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATG</genome_strand>
        <mrna_strand>CAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCACCGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGGACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299544" ref_strand="+" ref_description="SGN-E299544 [cLEW-20-C22]">
      <seq>aaaaccctagccgcagtcacttccataggagctgagaagcgaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71624" stop="68703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71324" g_stop="71264" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="207" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="265" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69003" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="599" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E299544" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71324" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAAT</genome_strand>
        <mrna_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTGAGAAGCGAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238149" ref_strand="+" ref_description="SGN-E238149 [cLED-22-L14]">
      <seq>ccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttntactgcaattttgatgagaacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71585" stop="68714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71285" g_stop="71264" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="168" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="226" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69014" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="549" r_length="323" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E238149" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71285" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGT</genome_strand>
        <mrna_strand>CCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTNTACTGCAATTTTGATGAGAACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299024" ref_strand="+" ref_description="SGN-E299024 [cLET-42-D10]">
      <seq>caaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactaggacttttgttttactgcaattttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71625" stop="68722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71325" g_stop="71264" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="208" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="266" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69022" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="581" r_length="315" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E299024" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71325" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATG</genome_strand>
        <mrna_strand>CAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGGACTTTTGTTTTACTGCAATTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304636" ref_strand="+" ref_description="SGN-E304636 [cLEX-11-C3]">
      <seq>aaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggnattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71624" stop="68722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71324" g_stop="71264" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="207" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="265" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69022" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="580" r_length="315" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E304636" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71324" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATG</genome_strand>
        <mrna_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGNATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325890" ref_strand="+" ref_description="SGN-E325890 [cTOC-12-G5]">
      <seq>aaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71624" stop="68722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71324" g_stop="71264" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="207" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="265" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69022" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="580" r_length="315" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E325890" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71324" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATG</genome_strand>
        <mrna_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302197" ref_strand="+" ref_description="SGN-E302197 [cLEW-19-G19]">
      <seq>cgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71613" stop="68722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71313" g_stop="71264" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="196" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="254" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69022" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="569" r_length="315" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E302197" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71313" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATG</genome_strand>
        <mrna_strand>CGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336212" ref_strand="+" ref_description="SGN-E336212 [cTOE-10-F5]">
      <seq>acttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71606" stop="68735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71306" g_stop="71264" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="189" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="247" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69035" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="549" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E336212" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71306" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTAC</genome_strand>
        <mrna_strand>ACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336879" ref_strand="+" ref_description="SGN-E336879 [cTOE-5-O4]">
      <seq>tcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71608" stop="68743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71308" g_stop="71264" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="191" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="249" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69043" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="543" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E336879" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71308" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTT</genome_strand>
        <mrna_strand>TCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307232" ref_strand="+" ref_description="SGN-E307232 [cLEY-15-N16]">
      <seq>aaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctataccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcacggcgagacgtgaggccccacctggtgagaagccagaggttgggagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgaaatgattagtcactacttagctgagttctccatctgatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71622" stop="68747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71322" g_stop="71264" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="205" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="263" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69047" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="553" r_length="290" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E307232" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71322" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTA</genome_strand>
        <mrna_strand>AACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTATACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCACGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGGGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAAATGATTAGTCACTACTTAGCTGAGTTCTCCATCTGATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324296" ref_strand="+" ref_description="SGN-E324296 [cTOC-4-F14]">
      <seq>ttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71604" stop="68751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71304" g_stop="71264" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="187" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="245" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69051" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="531" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E324296" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71304" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACT</genome_strand>
        <mrna_strand>TTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319891" ref_strand="+" ref_description="SGN-E319891 [cTOB-12-K10]">
      <seq>aaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattcgattgaagtgattcatccaaatctgtctacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71624" stop="68767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71324" g_stop="71264" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="207" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="265" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69067" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="535" r_length="270" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E319891" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71324" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACAT</genome_strand>
        <mrna_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCGATTGAAGTGATTCATCCAAATCTGTCTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286947" ref_strand="+" ref_description="SGN-E286947 [cLES-6-K23]">
      <seq>aaaaccctagccgcagtcactttcataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacattcgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcgaagtgaggccaagcctgagatgattagtcactacttagctgagttcttcatctcatacaagcctgtcaagcacggtaggcccggtataggtgctactcactcttcatggttcattccattgaagtgattcatccaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71624" stop="68775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71324" g_stop="71264" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="207" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="265" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69075" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="527" r_length="262" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E286947" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71324" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCT</genome_strand>
        <mrna_strand>AAAACCCTAGCCGCAGTCACTTTCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTCGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCGAAGTGAGGCCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTTCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATAGGTGCTACTCACTCTTCATGGTTCATTCCATTGAAGTGATTCATCCAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335390" ref_strand="+" ref_description="SGN-E335390 [cTOE-2-E16]">
      <seq>cttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggttcgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccataggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacgggaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71605" stop="68783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71305" g_stop="71264" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="188" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="246" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69083" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="500" r_length="254" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E335390" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71305" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCAT</genome_strand>
        <mrna_strand>CTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTCGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCATAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGGAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243806" ref_strand="+" ref_description="SGN-E243806 [cLED-35-D16]">
      <seq>ccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71585" stop="68798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71285" g_stop="71264" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="168" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="226" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69098" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="465" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E243806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71285" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCC</genome_strand>
        <mrna_strand>CCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307100" ref_strand="+" ref_description="SGN-E307100 [cLEY-15-N15]">
      <seq>aaaccctagccgcagtcacttccataggaggttanaagcgcaattcattctggaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaaacctgtcaagcacggtaggcccgggattggtgctactcactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71623" stop="68812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71323" g_stop="71264" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="207" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="265" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69112" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="490" r_length="225" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E307100" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71323" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGC-CAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCT</genome_strand>
        <mrna_strand>AAACCCTAGCCGCAGTCACTTCCATAGGAGGTTANAAGCGCAATTCATTCTGGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAACCTGTCAAGCACGGTAGGCCCGGGATTGGTGCTACTCACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279058" ref_strand="-" ref_description="SGN-E279058 [cLEL-4-O11](-)">
      <seq>gcacgagccaaaaccctagccgtagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71626" stop="68813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71333" g_stop="71264" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="216" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="274" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69113" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="498" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E279058" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279058" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71333" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTCCCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTC</genome_strand>
        <mrna_strand>GCACGAGCCAAAACCCTAGCCGTAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311537" ref_strand="+" ref_description="SGN-E311537 [cTOA-6-K7]">
      <seq>aaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71624" stop="68813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71324" g_stop="71264" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="207" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="265" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69113" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="489" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E311537" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71324" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTC</genome_strand>
        <mrna_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342446" ref_strand="+" ref_description="SGN-E342446 [cTOF-8-G4]">
      <seq>caaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71625" stop="68814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71325" g_stop="71264" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="208" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="266" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69114" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="489" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E342446" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71325" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACT</genome_strand>
        <mrna_strand>CAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322890" ref_strand="+" ref_description="SGN-E322890 [cTOB-30-P20]">
      <seq>aaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaaacctgtcaagcacgggagggccggcattggtgctactcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71624" stop="68814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71324" g_stop="71264" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="207" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="265" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69114" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="488" r_length="223" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E322890" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71324" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACT</genome_strand>
        <mrna_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAACCTGTCAAGCACGGGAGGGCCGGCATTGGTGCTACTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304827" ref_strand="+" ref_description="SGN-E304827 [cLEX-10-D2]">
      <seq>caaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcctgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71625" stop="68815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71325" g_stop="71264" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="208" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="266" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69115" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="488" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E304827" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71325" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCAC</genome_strand>
        <mrna_strand>CAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCCTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303936" ref_strand="+" ref_description="SGN-E303936 [cLEX-4-F17]">
      <seq>cagtcactttcataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggctccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggcaggcccggtattggtgctactcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71611" stop="68815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71311" g_stop="71264" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="194" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="252" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69115" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="474" r_length="222" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E303936" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71311" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCAC</genome_strand>
        <mrna_strand>CAGTCACTTTCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGCAGGCCCGGTATTGGTGCTACTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335803" ref_strand="+" ref_description="SGN-E335803 [cTOE-6-K9]">
      <seq>acttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71606" stop="68841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71306" g_stop="71264" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="189" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="247" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69141" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="443" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E335803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71306" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACG</genome_strand>
        <mrna_strand>ACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278727" ref_strand="+" ref_description="SGN-E278727 [cLER-2-M11]">
      <seq>accctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccaccctggtgagaagccaagagttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71621" stop="68842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71321" g_stop="71264" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="204" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="262" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69142" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="458" r_length="196" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E278727" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71321" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCA-CCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCAC</genome_strand>
        <mrna_strand>ACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCCTGGTGAGAAGCCAAGAGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281865" ref_strand="+" ref_description="SGN-E281865 [cLES-2-K10]">
      <seq>aaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71624" stop="68843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71324" g_stop="71264" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="207" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="265" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69143" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="459" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E281865" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71324" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCA</genome_strand>
        <mrna_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282693" ref_strand="+" ref_description="SGN-E282693 [cLER-15-L13]">
      <seq>accctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71621" stop="68843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71321" g_stop="71264" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="204" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="262" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69143" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="456" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E282693" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71321" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCA</genome_strand>
        <mrna_strand>ACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335658" ref_strand="+" ref_description="SGN-E335658 [cTOE-8-N15]">
      <seq>aaaccctagccgcagtcacttccataggagccttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaaccattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71623" stop="68848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71323" g_stop="71264" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="208" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="266" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69148" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="455" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E335658" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71323" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAGCCGCAGTCACTTCCATAGGAG-CTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAA-CATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTC</genome_strand>
        <mrna_strand>AAACCCTAGCCGCAGTCACTTCCATAGGAGCCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACCATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336706" ref_strand="+" ref_description="SGN-E336706 [cTOE-5-A24]">
      <seq>ctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgggagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71618" stop="68851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71318" g_stop="71264" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="201" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="259" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69151" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="445" r_length="186" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E336706" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71318" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCT</genome_strand>
        <mrna_strand>CTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGGGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315082" ref_strand="+" ref_description="SGN-E315082 [cTOB-4-O16]">
      <seq>cgcagttacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71613" stop="68851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71313" g_stop="71264" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="196" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="254" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69151" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="440" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E315082" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71313" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCT</genome_strand>
        <mrna_strand>CGCAGTTACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307198" ref_strand="+" ref_description="SGN-E307198 [cLEY-15-H21]">
      <seq>aaccctatccgcagtcacttccataggaggggagatgggaattcattctggaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71622" stop="68863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71322" g_stop="71264" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.864"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.86"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="205" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="263" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69163" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="437" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E307198" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71322" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATC</genome_strand>
        <mrna_strand>AACCCTATCCGCAGTCACTTCCATAGGAGGGGAGATGGGAATTCATTCTGGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318641" ref_strand="+" ref_description="SGN-E318641 [cTOB-9-F20]">
      <seq>cattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgttctcgcataaggttccagaggggtttgtagaggaagcctatggctttgatcaagaagctgcgccaggcggaacgtgagggcccacctggggagaagccagaggttgttagaacacatttgtgggacatgatcattggtccctccatgattggaagcgtcattggaatctacacaggtgaaactctcaatcaaattgaggtcaagcctgggatgattagtcactactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71466" stop="68878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71279" g_stop="71264" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="162" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="220" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69178" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="379" r_length="159" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E318641" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71279" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTA</genome_strand>
        <mrna_strand>CATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTTCTCGCATAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGTAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCCAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTGAGGGCCCACCTGGGGAGAAGCCAGAGGTTGTTAGAACACATTTGTGGGACATGATCATTGGTCCCTCCATGATTGGAAGCGTCATTGGAATCTACACAGGTGAAACTCTCAATCAAATTGAGGTCAAGCCTGGGATGATTAGTCACTACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338774" ref_strand="+" ref_description="SGN-E338774 [cTOE-21-D7]">
      <seq>tctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71466" stop="68879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71276" g_stop="71264" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="159" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="217" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69179" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="375" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E338774" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71276" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTT</genome_strand>
        <mrna_strand>TCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324630" ref_strand="+" ref_description="SGN-E324630 [cTOC-9-A16]">
      <seq>cgaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71459" stop="68881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71160" g_stop="71017" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="202" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69336" g_stop="69181" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="358" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E324630" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71160" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTAC</genome_strand>
        <mrna_strand>CGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313015" ref_strand="+" ref_description="SGN-E313015 [cTOA-14-A9]">
      <seq>aaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71623" stop="68912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71323" g_stop="71264" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="206" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="264" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69212" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="389" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E313015" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71323" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAAT</genome_strand>
        <mrna_strand>AAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312928" ref_strand="+" ref_description="SGN-E312928 [cTOA-14-A11]">
      <seq>aaaccctagccgtagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaagttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacattggaaaaactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71623" stop="68920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71323" g_stop="71264" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="206" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="264" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69220" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="381" r_length="117" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E312928" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71323" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTC</genome_strand>
        <mrna_strand>AAACCCTAGCCGTAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAAGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACATTGGAAAAACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307822" ref_strand="+" ref_description="SGN-E307822 [cLEY-20-C16]">
      <seq>tcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgctcctgagatgattggaagtgtcattggaatctacaatggaaaaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71608" stop="68921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71308" g_stop="71264" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="191" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="249" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69221" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="365" r_length="116" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E307822" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71308" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTT</genome_strand>
        <mrna_strand>TCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGCTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304828" ref_strand="+" ref_description="SGN-E304828 [cLEX-10-D6]">
      <seq>cttccataggagcttggaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccatggaagagaacattcaagaagttcatctacagaggagtagatctggattctcttcctgacgtgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccataggggtttgaagacgaagcctatggctttgatcaacaagctgcgcaaggcgaaacgtggggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgatcctgagatgattggaagcgtcattggaatctacaatggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71605" stop="68925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71305" g_stop="71264" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="188" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="246" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69225" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="358" r_length="112" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E304828" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71305" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAA</genome_strand>
        <mrna_strand>CTTCCATAGGAGCTTGGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCATGGAAGAGAACATTCAAGAAGTTCATCTACAGAGGAGTAGATCTGGATTCTCTTCCTGACGTGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCATAGGGGTTTGAAGACGAAGCCTATGGCTTTGATCAACAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGGGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGATCCTGAGATGATTGGAAGCGTCATTGGAATCTACAATGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270843" ref_strand="+" ref_description="SGN-E270843 [cLEM-6-I2]">
      <seq>accctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71621" stop="68992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71321" g_stop="71264" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="204" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="262" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69292" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="307" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E270843" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71321" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACA</genome_strand>
        <mrna_strand>ACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298980" ref_strand="+" ref_description="SGN-E298980 [cLET-42-O22]">
      <seq>caaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71625" stop="69018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71325" g_stop="71264" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="208" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="266" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="69318" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="285" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E298980" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71325" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="69318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTG</genome_strand>
        <mrna_strand>CAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E251011" ref_strand="+" ref_description="SGN-E251011 [cLEG-17-A14]">
      <seq>tcatattaggtgaagctgaaattcgtttgatatacaaaaagaaacaatataagtataatgaatcttttagatgtgtttctgggttcttagtcttaaacgacttagagatgtttagaattaggcgcctaaggccgagcgcttccctcgttaattaagaggtggcgtggtattccacagagtgaggtttttatttgtggcgcactaagtgcgtaggcgcacaataatgttttggggtctccatggctgctttgggtgcatcaacctgcttccaaggtgtcgggattgccctatattttcaatctcccagtcgctttgtctttcttctgccactagaatttctacttgttttgttacattcttttgctggatttatgtggcagtattgtttcttttcttgtacataatagtctatgtgaactagtttattgtgatggtgaaattttactactatagttttttgggaaggaggaaaggccttctgatgttcaaatcatataatcagaatgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="70326" stop="69220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70026" g_stop="69517" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E251011" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70026" e_stop="69517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCAC</genome_strand>
        <mrna_strand>TCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307170" ref_strand="+" ref_description="SGN-E307170 [cLEY-15-G24]">
      <seq>tcatattatgtgaagctgaaattcgtttgatatacaaagggaaacaatataagtataatgaatcttttagatgtgtttctgggttcttagtcttaaacgacttagagatgtttagaattaggcgcctaaggccgagcgcttccctcgttaattaagaggtggcgtggtattccacagagtgaggtttttatttgtggcgcactaagtgcgtaggcgcacaataatgttttggggtctccatggctgctttgggtgcatcaacctgcttccaaggtgtcgggattgccctatattttcaatctcccagtcgctttgtctttcttctgccactagaatttctacttgttttgttacattcttttgctggatttatgtggcagtattgtttcttttcttgtacataatagtctatgtgaactagtttattgtgatggtgaaattttactactatagtnttttgggaaggaggaaaggccttctgatgttcaaatcatataatcagaatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="70326" stop="69220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70026" g_stop="69518" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E307170" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70026" e_stop="69518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCA</genome_strand>
        <mrna_strand>TCATATTATGTGAAGCTGAAATTCGTTTGATATACAAAGGGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTNTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319627" ref_strand="+" ref_description="SGN-E319627 [cTOB-12-K1]">
      <seq>tttttagtacatctgaatgctttttctcgaagttagtgaatgcaaccatttactgagcatggacaatctagtttacctgtatctttgttgattatccatgatcacctattgttctttctagttgcagaattgtatattatttcaacccccagatttttgcatgttcgacaaagtcatattaggtgaagctgaaattcgtttgatatacaaaaagaaacaatataagtataatgaatcttttagatgtgtttctgggttcttagtcttaaacgacttagagatgtttagaattaggcgcctaaggccgatcgcttccctcgttaattaagaggtggcgtggtattccacagagtgaggtttttatttgtggcgcactaagtgcgtaggcgcacaataatgttttggggtctccatggctgctttgggtgcatcaacctgcttccaaggtgtcgggattgccctatattttcaatctcccagtcgctttgtctttcttctgccactagaatttctacttgttttgttacattcttttgctggatttatgtggcagtattgtttcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="70499" stop="69333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70199" g_stop="69633" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E319627" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70199" e_stop="69633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTC</genome_strand>
        <mrna_strand>TTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGATCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542709" ref_strand="+" ref_description="SGN-E542709 [TUS-64-C10]">
      <seq>cggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcggtaagattactaacctccttttagcttctcttttaaaaataaatggtttatttggtgttaaatatcagccattttatggtagagaaacttgaaatagatatgttaggggttgtggaatgattacatgtctttgctttttgtagcctcagttatatccagcacaccttgcatttgtctattaatttagtgagaactctattagtgtaactgcaatgctatagtgaatttagatcatgagtcaaaagactgctgcgatgtgaagctgcatttttagtacatctgaatgctttttctcgaagttagtgaatgcaaccatttactgagcatggacaatctagtttacctgtatctttgttgattatccatgatcacctattgttctttctagttgcagaattgtatattatttcaacccccagatttttgcatgttcgacaaagtcatattaggtgaagctgaaattcgtttgatatacaaaaagaaacaatataagtataatgaatcttttagatgtgtttctgggttcttagtnctaaacgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71461" stop="69624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71161" g_stop="71017" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="69924" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="746" r_length="601" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E542709" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71161" e_stop="71017"/>
          <exon e_start="70524" e_stop="69924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTT</genome_strand>
        <mrna_strand>CGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTNCTAAACGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321483" ref_strand="+" ref_description="SGN-E321483 [cTOB-23-L5]">
      <seq>aaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcggtaagattactaacctccttttagcttctcttttaaaaataaatggtttatttggtgttaaatatcagccattttatggtagagaaacttgaaatagatatgttaggggttgtggaatgattacatgtctttgctttttgtagcctcagttatatccagcacaccttgcatttgtctattaatttagtgagaactctattagtgtaactgcaatgctatagtgaatttagatcatgagtcaaaagactgctgcgatgtgaagctgcatttttagtacatctgaatgctttttctcgaagttagtgaatgcaaccatttactgagcatggacaatctagtttacctgtatctttgttgattatccatgatcacctattgttctttctagttgcagaattgtatattatttcaacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71624" stop="69751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71324" g_stop="71264" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="207" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70051" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="681" r_length="474" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E321483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71324" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCC</genome_strand>
        <mrna_strand>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301635" ref_strand="+" ref_description="SGN-E301635 [cLEW-23-M7]">
      <seq>ggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcggtaagattactaacctccttttagcttctcttttaaaaataaatggtttatttggtgttaaatatcagccattttatggtagagaaacttgaaatagatatgttaggggttgtggaatgattacatgtctttgctttttgtagcctcagttatatccagcacaccttgcatttgtctattaatttagtgagaactctattagtgtaactgcaatgctatagtgaatttagatcatgagtcaaaagactgctgcgatgtgaagctgcatttttagtacatctgaatgctttttctcgaagttagtgaatgcaaccatttactgagcatggacaatctagtttacctgtatctttgttgattatccatgatcaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71460" stop="69792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71160" g_stop="71017" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70524" g_stop="70092" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="577" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E301635" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71160" e_stop="71017"/>
          <exon e_start="70524" e_stop="70092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTA</genome_strand>
        <mrna_strand>GGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544413" ref_strand="+" ref_description="SGN-E544413 [TUS-66-L18]">
      <seq>cactgcttcgccattttcactggagctgttcctattgttaggcttataatttgtgtcccttgaggcatgatcttggcattgacacatctctttcgtagggctccctttttttaaaatgcttcaatctctctataaatgtcaaagaaacttgtgtacaaagatcaggacaaccagccttctcgtgcagtttgtgtcaactagctgtggcagcaacatcccaactgatgagagcacactcgttgatttgtatcacagaaagacacatggtttatcaaaagaaaacgtcattagtgaagcagaaccactccaattagatactgctcaatgttcaaaagtttcagcttttgttgagttcttccaaaaccatgggttttctgcaacccaaacgaagagactaattagactacgccctaaattactagtatcgaaggtggacaaaaccctaaagcccaagttgaagttcttgcaatcaattggctttactgaagatgaacgcaataagattatctgtggtaaccccaacatactcatgagtagcgtagagaaacaactgactccatgctttgattccctaaagatgttcatgggtagtgaaatgcaagcaatggctgccatcaaacgaagtccgcagatctttaattataaattctctgatggtttggagcagactctacaggtattgcaccaacttggtattcctgattctgaagcttcagagtttatttcaaaagttcccattatcttgactataaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="72764" stop="77604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73064" g_stop="73104" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73105" i_stop="76590" i_length="3486">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76591" g_stop="77304" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="755" r_length="714" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E544413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73064" e_stop="73104"/>
          <exon e_start="76591" e_stop="77304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGCTTCGCCATTTTCACTGGAGCTGTTCCTATTGTTAGGTATGTTATCTTGACTCCTCCTATTTTTGATGTATGTTTTATTTTTTAAAATTTGCTAATGATATTCGCTGTTCAAGTTTGTGTACATTGATTGATATAATTGAGGAAACAGCAGGAAATTTGTGCTATAATTTGGTGCTTTTCTGGTTCTTGAATTTGAATCTGATAATTTATCTGGGTTTTCTTTGTTTCTTTCTTTTATTTGTTCATTTAATCCGAATTCCTTTACCTGAGCACCCCCTTTACTGTTCTTCAGTCCCTTCAAGTTTTTGTTCCTTTGTGACTTGGGGCTTCTGGTAATTCTGAAGAAAAAGAAATTGCCTGTAGTTCATTAGTTTTTTCTTACAAGTTAAACGAAAGAATAGGGAAGAAGGATAACCAAGAGCCTACTTATTCTACTAAGTTTCATACTTGTAGAAAAAAATAATATTTTTAACCAAGATTGATTCTTTTTGAAGTGAACGACACGAACTCTTTGTTAGAATCCTACATTGATTGATTGATCTCGAATGAAATGAGTAGGGAATGATTTTGAAGAAGGTGAATTGGAAATGTGTTGCACAGCTCAGCCTATTTGCTTAGTGGTAATACGGTTCTCAAGAACCTAGAAGAGGGGGCAACACAAATGTTTGGAACTAATATTCTAGGAGAAGATGTTTTCAGATCATCCAATGAGTCGCGTGGAATGTAGTTGGTGTCGGAAAATGGAATTATTTTAATGTTTAACTTATACTTGTATGTTAGTAGTAATAGGAAGTATTGCTTCACAACATGACAATTGTTAAGCCTACGGAAGGGGTCAAAACTATAGTGTTTTAGAAAGATTTCTGTTGTTGGATTGCATAGAAGTAATGCATGTTATAGTTGGATGATAAGCTCAATAAAGATGTTTGTTGCATAGTATACTGTTGTCACTGCGACTGAGAAGTTAGGTAAGCATGTTACTTTTTTGGGTGATAGATTTGAGGCTTATAAGTTTTATGAATCTGACTAGCATTTTGGGTGGAAGGCTAGAGAAAATAAGGTCCTTATTCGATTGAGGCAGCATGCTAGAAGTTGTATAGATTACAATTACTTTCCTACCAGAGGACTTAGCTCAGCTAGTGAACTAATTATCAACTGCTCACTTTTGATATTATGATGGTTCACCACCACCCTTCAAGTGTGTTGTTGACTTGAGTTAAATCCTACAAGCAGTGAGTTCAAGTCATGAAGAGCTACAACACTTCTAAGGTGGAGAATATTGTTATGAGTGAGATTATAGTGGAAAGAAGATTCACAATGGAAACAATTGTTTATTATTCTGAGGAAGCATGCAGTAGACTAGCACTCCCCCTTATATGTTTTCTTCTTTGGTTCAGAACGTGTGAAAATGATCTTGATTGGGGACTTAAATTTGCAGCAATGTTATGAAAAAACAAAAGCACAAGGAAGTTATGCCTGAAGTTGTGAGGTGAATGCATTTTGAGGATAGTTCTTCTAAGTGTATTGAATTGATAAATGTGATGTATAAGTACATAATTGATTGGAAATAGAAGGGGAAAGAATAGATGTTGTGGTTGACTAGAATATCATATATGAACACCACTTATTTGAAAAAAAGAAGAAGTAAGAATACCATATACGAACACAACAGGAGTTATCAGCGGAGAATCTACTCTAAAAAGAGAACGAGGGAGAGGTAGGGACTTGAAGATCTTGGGCTTTATCAATGAGTTTGTTCAATCCTCTAAATATAATTAAGCTAGACAAACCAAATGAGCTCAAGGTCTGTACTAAAAAGTGGGGGCTTAAGATGTGATCTTCATCAATAAAAATATGAAGAGGCACCAAACAGTAAATAATAAGTGCCAAAAGATAAAATCGTAAAAGGTGAATTTCTCACCCTAAAACCACTAATAAGGAATGCATCGTATGAAAATTAGCAGAAAATGTCCTCATTGATGCTCAACTAGTGTTGAGTTTGGATTTGACTATGACTTGGATCTCAAGATTTGATGTCCATGTTGTTGACCTTACCTAGTGTCTCAACTAGGAGGCTGGCCAAGTCCTTTTCAAAGTCAAACTCAGATAGCTATATTTTTATAATAGTGATAAATCAGTACTTATTCTGTATCAATTTGTGTGTTTCACTTTCCTTTTCAGTTCGTCTAAAACAGAATGCCACTTTCTATATTTAGTAGGTGGCATTTGACTAGCACCATGTTTAAGAATTTAAGTAAGACTTCTGAAACTTATGATCTAAAACAAGCAATTAACTTTGTATGACTATGAATCAACTTAATAAGGGTAAAATAGAAAAATTAAAGTAAAACTGTTTCTAAATAACTGTAGTGTCTGGTTCAACTTGCGTGCACCACGACTAATTCCTTGGGGTAATTGCTACCTCCCACCAACACAAATACCAGGTAACTCCGTCCATCAAGGTTTGAACATCAGAATTTGAATCTCGTGGGCCTAATGAAGATGTGTATAATATACCAAAATGTCCTTTGAATGTTGTCTGGGATATGGAAACTAATTATAGAAAGTGGAATTCTTTTTAAAACATACTTAAAGGGAAGTAAGACAAATTAATTGAAACAGAGGATTATATTTTCCTCTCTGTCACAGTGTTCATGGTCCTCTTCCTCTTGCTCTCTTGGTCTGTCATGGAGCGACCAACAGTCATCATCTGCATAGCCTCTTGCTTTACTCTTTCTTATTATTGCCTGCTTCATCCACAATTTGACTTTCCCATTGTTTAGATGGCACTACTTTTTCTGTTTATACTTATGACTCACTGCTCTTTCATCTCACTCTTTCATTGTTACCAACAGAGACTTTATTACTATTTCTGCTCACTCAAGCATTATCTTCCACAATTTCCTTAGCTTTCCTGTGATAGAGGAATTCAATTTTTCCCTGTTGGTAAACCGGCAATAACAGTCTGAAGTATCTGCAAATATACAGCAATTTAATAAAAAAACAACCAAAGGAAACTCATTTTTTTGCTTCAGTTTTAATTAATTAATCTGTCTTGTCATACTGTTCTGAATCTTTTTGGGAGTGGTTGGAATAGGCATTTGACACTAGATCATTTAATCCTTTGTCGTCTTTTGTTCAAGTTGGATTTAATAACTTGAGTTTGAAAAACTGATTTCACATAGAGATTGAAAGTAAGAAAACCTAAATGCTGGACTGAGCTATTTTTATTTGGTAACAGTTAACGCACCAGACTCAAATATTTTCTTTAACTCAAACAGTCAGCTTATCAAACTGCTCGTGGCTGGTCCATTGTCATAATAGTTCTTCTAATGGGTCTAGAGATTGAGGAGTTTATCTGGCAATATGACAAAATTTTGGGGAATGTTGACTTTTCCTGAACTTGGAGGATTTATATAATTACACCAATGTTGAATTTCATTGTCCTCTTCTTTCACTAACAGGCACTCTTTTTTGGCGAACAGAGCTATTTAGCTAACAAGTTTTTGTTTGCTTTAGCAGGCTTATAATTTGTGTCCCTTGAGGCATGATCTTGGCATTGACACATCTCTTTCGTAGGGCTCCCTTTTTTTAAAATGCTTCAATCTCTCTATAAATGTCAAAGAAACTTGTGTACAAAGATCAGGACAACCAGCCTTCTCGTGCAGTTTGTGTCAACTAGCTGTGGCAGCAACATCCCAACTGATGAGAGCACACTCGTTGATTTGTATCACAGAAAGACACATGGTTTATCAAAAGAAAACGTCATTAGTGAAGCAGAACCACTCCAATTAGATACTGCTCAATGTTCAAAAGTTTCAGCTTTTGTTGAGTTCTTCCAAAACCATGGGTTTTCTGCAACCCAAACGAAGAGACTAATTAGACTACGCCCTAAATTACTAGTATCGAAGGTGGACAAAACCCTAAAGCCCAAGTTGAAGTTCTTGCAATCAATTGGCTTTACTGAAGATGAACGCAATAAGATTATCTGTGGTAACCCCAACATACTCATGAGTAGCGTAGAGAAACAACTGACTCCATGCTTTGATTCCCTAAAGATGTTCATGGGTAGTGAAATGCAAGCAATGGCTGCCATCAAACGAAGTCCGCAGATCTTTAATTATAAATTCTCTGATGGTTTGGAGCAGACTCTACAGGTATTGCACCAACTTGGTATTCCTGATTCTGAAGCTTCAGAGTTTATTTCAAAAGTTCCCATTATCTTGACTATAAATC</genome_strand>
        <mrna_strand>CACTGCTTCGCCATTTTCACTGGAGCTGTTCCTATTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATAATTTGTGTCCCTTGAGGCATGATCTTGGCATTGACACATCTCTTTCGTAGGGCTCCCTTTTTTTAAAATGCTTCAATCTCTCTATAAATGTCAAAGAAACTTGTGTACAAAGATCAGGACAACCAGCCTTCTCGTGCAGTTTGTGTCAACTAGCTGTGGCAGCAACATCCCAACTGATGAGAGCACACTCGTTGATTTGTATCACAGAAAGACACATGGTTTATCAAAAGAAAACGTCATTAGTGAAGCAGAACCACTCCAATTAGATACTGCTCAATGTTCAAAAGTTTCAGCTTTTGTTGAGTTCTTCCAAAACCATGGGTTTTCTGCAACCCAAACGAAGAGACTAATTAGACTACGCCCTAAATTACTAGTATCGAAGGTGGACAAAACCCTAAAGCCCAAGTTGAAGTTCTTGCAATCAATTGGCTTTACTGAAGATGAACGCAATAAGATTATCTGTGGTAACCCCAACATACTCATGAGTAGCGTAGAGAAACAACTGACTCCATGCTTTGATTCCCTAAAGATGTTCATGGGTAGTGAAATGCAAGCAATGGCTGCCATCAAACGAAGTCCGCAGATCTTTAATTATAAATTCTCTGATGGTTTGGAGCAGACTCTACAGGTATTGCACCAACTTGGTATTCCTGATTCTGAAGCTTCAGAGTTTATTTCAAAAGTTCCCATTATCTTGACTATAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307994" ref_strand="+" ref_description="SGN-E307994 [cLEY-14-I17]">
      <seq>actgcttcgccattttcactggagctgttcctattgttaggcttataatttgtgtcccttgaggcatgatcttggcattgacacatctctttcgtagggctccctttttttaaaatgcttcaatctctctataaatgtcaaagaaacttgtgtacaaagatcaggacaaccagccttctcgtgcagtttgtgtcaactagctgtggcagcaacatcccaactgatgagagcacactcgttgatttgtatcacagaaagacacatggtttatcaaaagaaaacgtcattagtgaagcagaaccactccaattagatactgctcaatgttcaaaagtttcagcttttgttgagttcttccaaaaccatgggttttctgcaacccaaacgaagagactaattagactacgccctaaattactagtatcgaaggtggacaaaaccctaaagcccaagttgaagttcttgcaatcaattggctttactgaagatgaacgcaataagattatctgtggtaaccccaacatactcatgagtagcgtagagaaacaactgactccatgctttgattccctaaagatgttcatgggtagtgaaatgcaagcaatggctgccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="72765" stop="77465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73065" g_stop="73104" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73105" i_stop="76590" i_length="3486">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76591" g_stop="77165" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="615" r_length="575" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E307994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73065" e_stop="73104"/>
          <exon e_start="76591" e_stop="77165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCTTCGCCATTTTCACTGGAGCTGTTCCTATTGTTAGGTATGTTATCTTGACTCCTCCTATTTTTGATGTATGTTTTATTTTTTAAAATTTGCTAATGATATTCGCTGTTCAAGTTTGTGTACATTGATTGATATAATTGAGGAAACAGCAGGAAATTTGTGCTATAATTTGGTGCTTTTCTGGTTCTTGAATTTGAATCTGATAATTTATCTGGGTTTTCTTTGTTTCTTTCTTTTATTTGTTCATTTAATCCGAATTCCTTTACCTGAGCACCCCCTTTACTGTTCTTCAGTCCCTTCAAGTTTTTGTTCCTTTGTGACTTGGGGCTTCTGGTAATTCTGAAGAAAAAGAAATTGCCTGTAGTTCATTAGTTTTTTCTTACAAGTTAAACGAAAGAATAGGGAAGAAGGATAACCAAGAGCCTACTTATTCTACTAAGTTTCATACTTGTAGAAAAAAATAATATTTTTAACCAAGATTGATTCTTTTTGAAGTGAACGACACGAACTCTTTGTTAGAATCCTACATTGATTGATTGATCTCGAATGAAATGAGTAGGGAATGATTTTGAAGAAGGTGAATTGGAAATGTGTTGCACAGCTCAGCCTATTTGCTTAGTGGTAATACGGTTCTCAAGAACCTAGAAGAGGGGGCAACACAAATGTTTGGAACTAATATTCTAGGAGAAGATGTTTTCAGATCATCCAATGAGTCGCGTGGAATGTAGTTGGTGTCGGAAAATGGAATTATTTTAATGTTTAACTTATACTTGTATGTTAGTAGTAATAGGAAGTATTGCTTCACAACATGACAATTGTTAAGCCTACGGAAGGGGTCAAAACTATAGTGTTTTAGAAAGATTTCTGTTGTTGGATTGCATAGAAGTAATGCATGTTATAGTTGGATGATAAGCTCAATAAAGATGTTTGTTGCATAGTATACTGTTGTCACTGCGACTGAGAAGTTAGGTAAGCATGTTACTTTTTTGGGTGATAGATTTGAGGCTTATAAGTTTTATGAATCTGACTAGCATTTTGGGTGGAAGGCTAGAGAAAATAAGGTCCTTATTCGATTGAGGCAGCATGCTAGAAGTTGTATAGATTACAATTACTTTCCTACCAGAGGACTTAGCTCAGCTAGTGAACTAATTATCAACTGCTCACTTTTGATATTATGATGGTTCACCACCACCCTTCAAGTGTGTTGTTGACTTGAGTTAAATCCTACAAGCAGTGAGTTCAAGTCATGAAGAGCTACAACACTTCTAAGGTGGAGAATATTGTTATGAGTGAGATTATAGTGGAAAGAAGATTCACAATGGAAACAATTGTTTATTATTCTGAGGAAGCATGCAGTAGACTAGCACTCCCCCTTATATGTTTTCTTCTTTGGTTCAGAACGTGTGAAAATGATCTTGATTGGGGACTTAAATTTGCAGCAATGTTATGAAAAAACAAAAGCACAAGGAAGTTATGCCTGAAGTTGTGAGGTGAATGCATTTTGAGGATAGTTCTTCTAAGTGTATTGAATTGATAAATGTGATGTATAAGTACATAATTGATTGGAAATAGAAGGGGAAAGAATAGATGTTGTGGTTGACTAGAATATCATATATGAACACCACTTATTTGAAAAAAAGAAGAAGTAAGAATACCATATACGAACACAACAGGAGTTATCAGCGGAGAATCTACTCTAAAAAGAGAACGAGGGAGAGGTAGGGACTTGAAGATCTTGGGCTTTATCAATGAGTTTGTTCAATCCTCTAAATATAATTAAGCTAGACAAACCAAATGAGCTCAAGGTCTGTACTAAAAAGTGGGGGCTTAAGATGTGATCTTCATCAATAAAAATATGAAGAGGCACCAAACAGTAAATAATAAGTGCCAAAAGATAAAATCGTAAAAGGTGAATTTCTCACCCTAAAACCACTAATAAGGAATGCATCGTATGAAAATTAGCAGAAAATGTCCTCATTGATGCTCAACTAGTGTTGAGTTTGGATTTGACTATGACTTGGATCTCAAGATTTGATGTCCATGTTGTTGACCTTACCTAGTGTCTCAACTAGGAGGCTGGCCAAGTCCTTTTCAAAGTCAAACTCAGATAGCTATATTTTTATAATAGTGATAAATCAGTACTTATTCTGTATCAATTTGTGTGTTTCACTTTCCTTTTCAGTTCGTCTAAAACAGAATGCCACTTTCTATATTTAGTAGGTGGCATTTGACTAGCACCATGTTTAAGAATTTAAGTAAGACTTCTGAAACTTATGATCTAAAACAAGCAATTAACTTTGTATGACTATGAATCAACTTAATAAGGGTAAAATAGAAAAATTAAAGTAAAACTGTTTCTAAATAACTGTAGTGTCTGGTTCAACTTGCGTGCACCACGACTAATTCCTTGGGGTAATTGCTACCTCCCACCAACACAAATACCAGGTAACTCCGTCCATCAAGGTTTGAACATCAGAATTTGAATCTCGTGGGCCTAATGAAGATGTGTATAATATACCAAAATGTCCTTTGAATGTTGTCTGGGATATGGAAACTAATTATAGAAAGTGGAATTCTTTTTAAAACATACTTAAAGGGAAGTAAGACAAATTAATTGAAACAGAGGATTATATTTTCCTCTCTGTCACAGTGTTCATGGTCCTCTTCCTCTTGCTCTCTTGGTCTGTCATGGAGCGACCAACAGTCATCATCTGCATAGCCTCTTGCTTTACTCTTTCTTATTATTGCCTGCTTCATCCACAATTTGACTTTCCCATTGTTTAGATGGCACTACTTTTTCTGTTTATACTTATGACTCACTGCTCTTTCATCTCACTCTTTCATTGTTACCAACAGAGACTTTATTACTATTTCTGCTCACTCAAGCATTATCTTCCACAATTTCCTTAGCTTTCCTGTGATAGAGGAATTCAATTTTTCCCTGTTGGTAAACCGGCAATAACAGTCTGAAGTATCTGCAAATATACAGCAATTTAATAAAAAAACAACCAAAGGAAACTCATTTTTTTGCTTCAGTTTTAATTAATTAATCTGTCTTGTCATACTGTTCTGAATCTTTTTGGGAGTGGTTGGAATAGGCATTTGACACTAGATCATTTAATCCTTTGTCGTCTTTTGTTCAAGTTGGATTTAATAACTTGAGTTTGAAAAACTGATTTCACATAGAGATTGAAAGTAAGAAAACCTAAATGCTGGACTGAGCTATTTTTATTTGGTAACAGTTAACGCACCAGACTCAAATATTTTCTTTAACTCAAACAGTCAGCTTATCAAACTGCTCGTGGCTGGTCCATTGTCATAATAGTTCTTCTAATGGGTCTAGAGATTGAGGAGTTTATCTGGCAATATGACAAAATTTTGGGGAATGTTGACTTTTCCTGAACTTGGAGGATTTATATAATTACACCAATGTTGAATTTCATTGTCCTCTTCTTTCACTAACAGGCACTCTTTTTTGGCGAACAGAGCTATTTAGCTAACAAGTTTTTGTTTGCTTTAGCAGGCTTATAATTTGTGTCCCTTGAGGCATGATCTTGGCATTGACACATCTCTTTCGTAGGGCTCCCTTTTTTTAAAATGCTTCAATCTCTCTATAAATGTCAAAGAAACTTGTGTACAAAGATCAGGACAACCAGCCTTCTCGTGCAGTTTGTGTCAACTAGCTGTGGCAGCAACATCCCAACTGATGAGAGCACACTCGTTGATTTGTATCACAGAAAGACACATGGTTTATCAAAAGAAAACGTCATTAGTGAAGCAGAACCACTCCAATTAGATACTGCTCAATGTTCAAAAGTTTCAGCTTTTGTTGAGTTCTTCCAAAACCATGGGTTTTCTGCAACCCAAACGAAGAGACTAATTAGACTACGCCCTAAATTACTAGTATCGAAGGTGGACAAAACCCTAAAGCCCAAGTTGAAGTTCTTGCAATCAATTGGCTTTACTGAAGATGAACGCAATAAGATTATCTGTGGTAACCCCAACATACTCATGAGTAGCGTAGAGAAACAACTGACTCCATGCTTTGATTCCCTAAAGATGTTCATGGGTAGTGAAATGCAAGCAATGGCTGCCATC</genome_strand>
        <mrna_strand>ACTGCTTCGCCATTTTCACTGGAGCTGTTCCTATTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATAATTTGTGTCCCTTGAGGCATGATCTTGGCATTGACACATCTCTTTCGTAGGGCTCCCTTTTTTTAAAATGCTTCAATCTCTCTATAAATGTCAAAGAAACTTGTGTACAAAGATCAGGACAACCAGCCTTCTCGTGCAGTTTGTGTCAACTAGCTGTGGCAGCAACATCCCAACTGATGAGAGCACACTCGTTGATTTGTATCACAGAAAGACACATGGTTTATCAAAAGAAAACGTCATTAGTGAAGCAGAACCACTCCAATTAGATACTGCTCAATGTTCAAAAGTTTCAGCTTTTGTTGAGTTCTTCCAAAACCATGGGTTTTCTGCAACCCAAACGAAGAGACTAATTAGACTACGCCCTAAATTACTAGTATCGAAGGTGGACAAAACCCTAAAGCCCAAGTTGAAGTTCTTGCAATCAATTGGCTTTACTGAAGATGAACGCAATAAGATTATCTGTGGTAACCCCAACATACTCATGAGTAGCGTAGAGAAACAACTGACTCCATGCTTTGATTCCCTAAAGATGTTCATGGGTAGTGAAATGCAAGCAATGGCTGCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E692124" ref_strand="+" ref_description="SGN-E692124 [LH_Ea07O10]">
      <seq>tgttaggcttataatttgtgtcccttgaggcatgatcttggcattgacacatctctttcatagggctcccttcttttaaaatgcttcaatctctctataaatgtcaaagaaacttgtgtacaaagatcaggacaaccagccttctcgtgcagtttgtgtcaactagctgtggcagcaacatcccaactgatgagagcacactcattaatttgtatcacagaaagacacatggtttatcaaaagaaaacatcattagtgaagcagaaccactccaattcgatactgctcaatgttcaaaagtttcagcttttattgagttcttccaaaaccatgggttttctgcaaatcaaacgaagagactaattagactacgccctaaattactagtatcgaaggtggacaaaaccctaaagcccaagttcaagttcttgcaatcaattggctttactgaagatgaacgcaataagattatctgtggtaaccccaacatactcatgagtagcgtagagaaacaactgactccatgctttgattccctaaagatgttcatgggtagtgaaatgcaagcaatggcttccatcaaacgaagtccgcagatctttaattataagttctctggtggtttggagcagactctacaggtattgcaccaacttggtattcctgattctgaagtttcagagtttatttcaaaagttcccattatcttgactataaatcccaaaaagatgagtaaggttggcttgagacttaaggaattggggtttgatgttacttcttcagcatttagggcagcttttaccgcaatgtctgtacttagtgattcaaaaatggaaaagaaactggaaaactaccgaagtatgggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="76289" stop="77753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76585" g_stop="77453" g_length="869"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="869" r_length="869" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E692124" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76585" e_stop="77453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAGGCTTATAATTTGTGTCCCTTGAGGCATGATCTTGGCATTGACACATCTCTTTCGTAGGGCTCCCTTTTTTTAAAATGCTTCAATCTCTCTATAAATGTCAAAGAAACTTGTGTACAAAGATCAGGACAACCAGCCTTCTCGTGCAGTTTGTGTCAACTAGCTGTGGCAGCAACATCCCAACTGATGAGAGCACACTCGTTGATTTGTATCACAGAAAGACACATGGTTTATCAAAAGAAAACGTCATTAGTGAAGCAGAACCACTCCAATTAGATACTGCTCAATGTTCAAAAGTTTCAGCTTTTGTTGAGTTCTTCCAAAACCATGGGTTTTCTGCAACCCAAACGAAGAGACTAATTAGACTACGCCCTAAATTACTAGTATCGAAGGTGGACAAAACCCTAAAGCCCAAGTTGAAGTTCTTGCAATCAATTGGCTTTACTGAAGATGAACGCAATAAGATTATCTGTGGTAACCCCAACATACTCATGAGTAGCGTAGAGAAACAACTGACTCCATGCTTTGATTCCCTAAAGATGTTCATGGGTAGTGAAATGCAAGCAATGGCTGCCATCAAACGAAGTCCGCAGATCTTTAATTATAAATTCTCTGATGGTTTGGAGCAGACTCTACAGGTATTGCACCAACTTGGTATTCCTGATTCTGAAGCTTCAGAGTTTATTTCAAAAGTTCCCATTATCTTGACTATAAATCCCAAAAAGATGAGTAAGGTTGGCTTGAGACTTAAGGAATTGGGGTTTGATGTTACTTCTTCAGCATTTAGGGCAGCTTTTACCGCAATGTCTGTACTTAGTGATTCCAAAATGGAAAAGAAACTGGAAAACTACCGAAGTATGGGCTTT</genome_strand>
        <mrna_strand>TGTTAGGCTTATAATTTGTGTCCCTTGAGGCATGATCTTGGCATTGACACATCTCTTTCATAGGGCTCCCTTCTTTTAAAATGCTTCAATCTCTCTATAAATGTCAAAGAAACTTGTGTACAAAGATCAGGACAACCAGCCTTCTCGTGCAGTTTGTGTCAACTAGCTGTGGCAGCAACATCCCAACTGATGAGAGCACACTCATTAATTTGTATCACAGAAAGACACATGGTTTATCAAAAGAAAACATCATTAGTGAAGCAGAACCACTCCAATTCGATACTGCTCAATGTTCAAAAGTTTCAGCTTTTATTGAGTTCTTCCAAAACCATGGGTTTTCTGCAAATCAAACGAAGAGACTAATTAGACTACGCCCTAAATTACTAGTATCGAAGGTGGACAAAACCCTAAAGCCCAAGTTCAAGTTCTTGCAATCAATTGGCTTTACTGAAGATGAACGCAATAAGATTATCTGTGGTAACCCCAACATACTCATGAGTAGCGTAGAGAAACAACTGACTCCATGCTTTGATTCCCTAAAGATGTTCATGGGTAGTGAAATGCAAGCAATGGCTTCCATCAAACGAAGTCCGCAGATCTTTAATTATAAGTTCTCTGGTGGTTTGGAGCAGACTCTACAGGTATTGCACCAACTTGGTATTCCTGATTCTGAAGTTTCAGAGTTTATTTCAAAAGTTCCCATTATCTTGACTATAAATCCCAAAAAGATGAGTAAGGTTGGCTTGAGACTTAAGGAATTGGGGTTTGATGTTACTTCTTCAGCATTTAGGGCAGCTTTTACCGCAATGTCTGTACTTAGTGATTCAAAAATGGAAAAGAAACTGGAAAACTACCGAAGTATGGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714589" ref_strand="+" ref_description="SGN-E714589 [FB11DE05]">
      <seq>ctttaattataaattctctgatggtttggagcagactctacaggtattgcaccaacttggtattcctgattctgaagcttcagagtttatttcaaaagttcccattatcttgactataaatcccaaaaagatgagtaaggttggcttgagacttaaggaattggggtttgatgttacttcttcagcatttagggcagcttttaccgcaatgtctgtacttagtgattccaaaatggaaaagaaactggaaaactaccgaagtatgggcttttcagatggcgagatccgcaatatattcagattgcagccaacttgcatgttttattctgaggataatatcagggcaattgtggcattctatgttaataaactccatttgagcctatcacacttgtcacaaagaccatcctttctattgcgtagcctgaagaagagggttattcccaggtgttctgtcatgcaagttttgtggtcaacaggcgttatttcaaaagttaacaaactatcctcaattctaatgattagtgaaaaggacttcttacggaagtgtgttactaaatatgaagcacaagttcctcaactgctagctgcctaccgtggtgaacttgtgttcaacgaatacacttttcatttacgtgaaattcatcagatttcagtgtcaaaggcatcatcttctaaagctacgtagcttagtagtatttgcaccatctgtatctttcactgcaccatttactgtcgcattcatgttatcaacattgtttcccatatttaagttgaactactgccgttctgttcgtagaggtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="76883" stop="78292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77183" g_stop="77983" g_length="801"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="801" r_length="801" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77984" i_stop="78074" i_length="91">
            <donor d_prob="0.446" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78075" g_stop="78089" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="802" r_stop="816" r_length="15" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E714589" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77183" e_stop="77983"/>
          <exon e_start="78075" e_stop="78089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAATTATAAATTCTCTGATGGTTTGGAGCAGACTCTACAGGTATTGCACCAACTTGGTATTCCTGATTCTGAAGCTTCAGAGTTTATTTCAAAAGTTCCCATTATCTTGACTATAAATCCCAAAAAGATGAGTAAGGTTGGCTTGAGACTTAAGGAATTGGGGTTTGATGTTACTTCTTCAGCATTTAGGGCAGCTTTTACCGCAATGTCTGTACTTAGTGATTCCAAAATGGAAAAGAAACTGGAAAACTACCGAAGTATGGGCTTTTCAGATGGCGAGATCCGCAATATATTCAGATTGCAGCCAACTTGCATGTTTTATTCTGAGGATAATATCAGGGCAATTGTGGCATTCTATGTTAATAAACTCCATTTGAGCCTATCACACTTGTCACAAAGACCATCCTTTCTATTGCGTAGCCTGAAGAAGAGGGTTATTCCCAGGTGTTCTGTCATGCAAGTTTTGTGGTCAACAGGCGTTATTTCAAAAGTTAACAAACTATCCTCAATTCTAATGATTAGTGAAAAGGACTTCTTACGGAAGTGTGTTACTAAATATGAAGCACAAGTTCCTCAACTGCTAGCTGCCTACCGTGGTGAACTTGTGTTCAACGAATACACTTTTCATTTACGTGAAATTCATCAGATTTCAGTGTCAAAGGCATCATCTTCTAAAGCTACGTAGCTTAGTAGTATTTGCACCATCTGTATCTTTCACTGCACCATTTACTGTCGCATTCATGTTATCAACATTGTTTCCCATATTTAAGTTGAACTACTGCCGTTCTGTTCGTAGAGGTACTAGAATTCTTTACTGGTAAGCTTATGAAGGAAATAAATTTTCTGATACTGCATATGCGTTTTTTTACACTGAACATCAAAATTTCAGGGCAAAACTAGAGAA</genome_strand>
        <mrna_strand>CTTTAATTATAAATTCTCTGATGGTTTGGAGCAGACTCTACAGGTATTGCACCAACTTGGTATTCCTGATTCTGAAGCTTCAGAGTTTATTTCAAAAGTTCCCATTATCTTGACTATAAATCCCAAAAAGATGAGTAAGGTTGGCTTGAGACTTAAGGAATTGGGGTTTGATGTTACTTCTTCAGCATTTAGGGCAGCTTTTACCGCAATGTCTGTACTTAGTGATTCCAAAATGGAAAAGAAACTGGAAAACTACCGAAGTATGGGCTTTTCAGATGGCGAGATCCGCAATATATTCAGATTGCAGCCAACTTGCATGTTTTATTCTGAGGATAATATCAGGGCAATTGTGGCATTCTATGTTAATAAACTCCATTTGAGCCTATCACACTTGTCACAAAGACCATCCTTTCTATTGCGTAGCCTGAAGAAGAGGGTTATTCCCAGGTGTTCTGTCATGCAAGTTTTGTGGTCAACAGGCGTTATTTCAAAAGTTAACAAACTATCCTCAATTCTAATGATTAGTGAAAAGGACTTCTTACGGAAGTGTGTTACTAAATATGAAGCACAAGTTCCTCAACTGCTAGCTGCCTACCGTGGTGAACTTGTGTTCAACGAATACACTTTTCATTTACGTGAAATTCATCAGATTTCAGTGTCAAAGGCATCATCTTCTAAAGCTACGTAGCTTAGTAGTATTTGCACCATCTGTATCTTTCACTGCACCATTTACTGTCGCATTCATGTTATCAACATTGTTTCCCATATTTAAGTTGAACTACTGCCGTTCTGTTCGTAGAG...........................................................................................GTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544412" ref_strand="+" ref_description="SGN-E544412 [TUS-66-L18](-)">
      <seq>aaagttcccattatcttgactataaatcccaaaaagatgagtaaggttggcttgagacttaaggaattggggtttgatgttacttcttcagcatttagggcagcttttaccgcaatgtctgtacttagtgattccaaaatggaaaagaaactggaaaactaccgaagtatgggcttttcagatggcgagatccgcaatatattcagattgcagccaacttgcatgttttattctgaggataatatcagggcaattgtggcattctatgttaataaactccatttgagcctatcacacttgtcacaaagaccatcctttctattgcgtagcctgaagaagagggttattcccaggtgttctgtcatgcaagttttgtggtcaacaggcgttatttcaaaagttaacaaactatcctcaattctaatgattagtgaaaaggacttcttacggaagtgtgttactaaatatgaagcacaagttcctcaactgctagctgcctaccgtggtgaacttgtgttcaacgaatacacttttcatttacgtgaaattcatcagatttcagtgtcaaaggcatcatcttctaaagctacgtagcttagtagtatttgcaccatctgtatctttcactgcaccatttactgtcgcattcatgttatcaacattgtttcccatatttaagttgaactactgccgttctgttcgtagaggtactagaattctttactggtaagcttatgaaggaaataaattttctgataaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="76977" stop="78334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77277" g_stop="78031" g_length="755"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="755" r_length="755" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="756" polyA_stop="776"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E544412" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77277" e_stop="78031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCCCATTATCTTGACTATAAATCCCAAAAAGATGAGTAAGGTTGGCTTGAGACTTAAGGAATTGGGGTTTGATGTTACTTCTTCAGCATTTAGGGCAGCTTTTACCGCAATGTCTGTACTTAGTGATTCCAAAATGGAAAAGAAACTGGAAAACTACCGAAGTATGGGCTTTTCAGATGGCGAGATCCGCAATATATTCAGATTGCAGCCAACTTGCATGTTTTATTCTGAGGATAATATCAGGGCAATTGTGGCATTCTATGTTAATAAACTCCATTTGAGCCTATCACACTTGTCACAAAGACCATCCTTTCTATTGCGTAGCCTGAAGAAGAGGGTTATTCCCAGGTGTTCTGTCATGCAAGTTTTGTGGTCAACAGGCGTTATTTCAAAAGTTAACAAACTATCCTCAATTCTAATGATTAGTGAAAAGGACTTCTTACGGAAGTGTGTTACTAAATATGAAGCACAAGTTCCTCAACTGCTAGCTGCCTACCGTGGTGAACTTGTGTTCAACGAATACACTTTTCATTTACGTGAAATTCATCAGATTTCAGTGTCAAAGGCATCATCTTCTAAAGCTACGTAGCTTAGTAGTATTTGCACCATCTGTATCTTTCACTGCACCATTTACTGTCGCATTCATGTTATCAACATTGTTTCCCATATTTAAGTTGAACTACTGCCGTTCTGTTCGTAGAGGTACTAGAATTCTTTACTGGTAAGCTTATGAAGGAAATAAATTTTCTG</genome_strand>
        <mrna_strand>AAAGTTCCCATTATCTTGACTATAAATCCCAAAAAGATGAGTAAGGTTGGCTTGAGACTTAAGGAATTGGGGTTTGATGTTACTTCTTCAGCATTTAGGGCAGCTTTTACCGCAATGTCTGTACTTAGTGATTCCAAAATGGAAAAGAAACTGGAAAACTACCGAAGTATGGGCTTTTCAGATGGCGAGATCCGCAATATATTCAGATTGCAGCCAACTTGCATGTTTTATTCTGAGGATAATATCAGGGCAATTGTGGCATTCTATGTTAATAAACTCCATTTGAGCCTATCACACTTGTCACAAAGACCATCCTTTCTATTGCGTAGCCTGAAGAAGAGGGTTATTCCCAGGTGTTCTGTCATGCAAGTTTTGTGGTCAACAGGCGTTATTTCAAAAGTTAACAAACTATCCTCAATTCTAATGATTAGTGAAAAGGACTTCTTACGGAAGTGTGTTACTAAATATGAAGCACAAGTTCCTCAACTGCTAGCTGCCTACCGTGGTGAACTTGTGTTCAACGAATACACTTTTCATTTACGTGAAATTCATCAGATTTCAGTGTCAAAGGCATCATCTTCTAAAGCTACGTAGCTTAGTAGTATTTGCACCATCTGTATCTTTCACTGCACCATTTACTGTCGCATTCATGTTATCAACATTGTTTCCCATATTTAAGTTGAACTACTGCCGTTCTGTTCGTAGAGGTACTAGAATTCTTTACTGGTAAGCTTATGAAGGAAATAAATTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283213" ref_strand="+" ref_description="SGN-E283213 [cLER-17-F6]">
      <seq>aaacagagatacctacaaatggcgaaatcaatgagatcaaagagggaaaagaggctgagagctataaggagggatatagttgctacagaaccatctgttcttaagaaagaagctgctaaattggctgcccaagaagctgcccttgctgctcctaagcttattgttaagtctcccttcagccgcaccaccatggatacttctgcctctacttctaacgacgaatctaaaatggatgtggagatggctgatggcaatcaaagttcaaaatctctaaaacctcttggaaagaagatgaaaaagaagcttaaaatagctaagaagaagaatcatggcaagggaaagatcaggaggaagaatgtttgactgcaggcggtagccatcttgctaagctgatagatgtcttgttacttactgttgacaagtccctcccatattctctccttgattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="80891" stop="78654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80591" g_stop="80360" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80359" i_stop="79173" i_length="1187">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79172" g_stop="78954" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="451" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-E283213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80591" e_stop="80360"/>
          <exon e_start="79172" e_stop="78954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGAGATACCTACAAATGGCGAAATCAATGAGATCAAAGAGGGAAAAGAGGCTGAGAGCTATAAGGAGGGATATAGTTGCTACAGAACCATCTGTTCTTAAGAAAGAAGCTGCTAAATTGGCTGCCCAAGAAGCTGCCCTTGCTGCTCCTAAGCTTATTGTTAAGTCTCCCTTCAGCCGCACCACCATGGATACTTCTGCCTCTACTTCTAACGACGAATCTAAAATGGGTATGCTTCTATTTATTTTTCCCATCGATTCACTTTTACTTGATTTGGAATAAATTTGATATCAAATTTGCTAAAAGACCAAAATTTTGTTGCTTTGGCTGCTTCTAGTTTGAATTTCTTTTTTTATGGTTTCAAATTTATCTTCTGCTGTTACCATTTATATTCTTGTGTGTTTGTTTTTGGAGTATGATATTTTGACAGGATGGAGTGGTGTGAGAAAGGTGGAAAACAGAAAAAATAAAAATTTATAGAGAAGATGTAAGAATGAAGAACGTATCTGGGTATTGCTATGGGAGCTTCATATTTCTTTGAAGATATTATCTTTGGAGATATCATGAATATGGCTATAGTAGATTCATATTTATGTGAAGTTTGACGAGATATCATGAAGTGTTGGCAAGTTCCTTACTACAGTTTTTAGACCATCAATGTCACATGAGAGTGAAGCTAAGGTTCTTTAGGTCCTAAATTGTTGCCAAACAAGCAACATGCATAGTTGAGGAGTGCACGAGTTGGCCTAAGCACCGCCATTATAAAAAAAATTGAAGCAGACTGAATAATGCATACAGGCAATCTAACTAATCAGGATTGAACCGTTTTTGTCAACTTTTGAAAGCTGATATTATGATGCATAAAATAACTCTTCATCTTTTCTTACTTTTTTGTTAGTGAATTTTGCTAGTTCTTAAGATACTCCAGATGAGGCTTAATTTAAGAGATTGAGATTAATGATTTAGCCAGTTAACGCTGATAATAGATTAACGGTCAGTTATCAGCATCAACCACTTTGTCTCAGTGTGTATATCCAGTGATTCCAGTAGTGATATGAAAGGAGGAATTATATGAATTATCTGAAACATATTGCCACGAAAGGAAGATATCTCGTTACTAGAGTTCATTGAATACATTAGTTTCATAAGTTTAGCTTGTACATCATCAGTGTGCACAATCAAGACACAACTCCATATCATGCCTTTTTCTTTTGGAACCCAGAAACAGCCCCCAACAACTAGCGTCCTAATATTATAAGTTCCTATTTAAATTTTATGGAAAGATTAATACATGTGAGTAAGATTTAACTGCTCATTCTACTCCAGTGTCCTGTATCTGCTATTGCTGCTGAAACTTGTGCACCTGATTTTTAGCCTCCCCTCAGTATGTTATCTTGTCATTGTTTTGATTTCCAGATGTGGAGATGGCTGATGGCAATCAAAGTTCAAAATCTCTAAAACCTCTTGGAAAGAAGATGAAAAAGAAGCTTAAAATAGCTAAGAAGAAGAATCATGGCAAGGGAAAGATCAGGAGGAAGAATGTTTGACTGCAGGCGGTAGCCATCTTGCTAAGCTGATAGATGTCTTGTTACTTACTGTTGACAAGTCCCTCCCATATTCTCTCCTTGATTCATG</genome_strand>
        <mrna_strand>AAACAGAGATACCTACAAATGGCGAAATCAATGAGATCAAAGAGGGAAAAGAGGCTGAGAGCTATAAGGAGGGATATAGTTGCTACAGAACCATCTGTTCTTAAGAAAGAAGCTGCTAAATTGGCTGCCCAAGAAGCTGCCCTTGCTGCTCCTAAGCTTATTGTTAAGTCTCCCTTCAGCCGCACCACCATGGATACTTCTGCCTCTACTTCTAACGACGAATCTAAAATGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGAGATGGCTGATGGCAATCAAAGTTCAAAATCTCTAAAACCTCTTGGAAAGAAGATGAAAAAGAAGCTTAAAATAGCTAAGAAGAAGAATCATGGCAAGGGAAAGATCAGGAGGAAGAATGTTTGACTGCAGGCGGTAGCCATCTTGCTAAGCTGATAGATGTCTTGTTACTTACTGTTGACAAGTCCCTCCCATATTCTCTCCTTGATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335885" ref_strand="+" ref_description="SGN-E335885 [cTOE-6-J6]">
      <seq>aacagattcagtcagtggttgatctgcgctagggttgcttccagcttgaaccttcctatatgcttccattttgttgatcttcaatctcgattttcaatttctccagctcaatttttatctatagaacaagaaaaagtgtataattttggaaagacaagaaaagaaaactagatgatgtctggaaatgctttagtccatgtatcaacaaattctactgttttccccatcatacccagtagaagaaatgtgttgggtgatcgttttctgtgtataaaatcaccaatcaggcctaaaaatcgaacctttagtgtgaaagcaatgtctgcaaatacgggtcatagtcaagaacaagagcaacaacccgagtcatcttccgaccagaaaggtccactttctgttattttagatgttcccaggaatatttggaagcgaactatgcgtccattgagtgattttgggtttggtaaaaggagcatctgggaaggtggggttgggttgtttatcgtttcgggtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="81979" stop="83094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82279" g_stop="82794" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E335885" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82279" e_stop="82794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGATTCAGTCAGTGGTTGATCTGCGCTAGGGTTGCTTCCAGCTTGAACCTTCCTATATGCTTCCATTTTGTTGATCTTCAATCTCGATTTTCAATTTCTCCAGCTCAATTTTTATCTATAGAACAAGAAAAAGTGTATAATTTTGGAAAGACAAGAAAAGAAAACTAGATGATGTCTGGAAATGCTTTAGTCCATGTATCAACAAATTCTACTGTTTTCCCCATCATACCCAGTAGAAGAAATGTGTTGGGTGATCGTTTTCTGTGTATAAAATCACCAATCAGGCCTAAAAATCGAACCTTTAGTGTGAAAGCAATGTCTGCAAATACGGGTCATAGTCAAGAACAAGAGCAACAACCCGAGTCATCTTCCGACCAGAAAGGTCCACTTTCTGTTATTTTAGATGTTCCCAGGAATATTTGGAAGCGAACTATGCGTCCATTGAGTGATTTTGGGTTTGGTAAAAGGAGCATCTGGGAAGGTGGGGTTGGGTTGTTTATCGTTTCGGGTACT</genome_strand>
        <mrna_strand>AACAGATTCAGTCAGTGGTTGATCTGCGCTAGGGTTGCTTCCAGCTTGAACCTTCCTATATGCTTCCATTTTGTTGATCTTCAATCTCGATTTTCAATTTCTCCAGCTCAATTTTTATCTATAGAACAAGAAAAAGTGTATAATTTTGGAAAGACAAGAAAAGAAAACTAGATGATGTCTGGAAATGCTTTAGTCCATGTATCAACAAATTCTACTGTTTTCCCCATCATACCCAGTAGAAGAAATGTGTTGGGTGATCGTTTTCTGTGTATAAAATCACCAATCAGGCCTAAAAATCGAACCTTTAGTGTGAAAGCAATGTCTGCAAATACGGGTCATAGTCAAGAACAAGAGCAACAACCCGAGTCATCTTCCGACCAGAAAGGTCCACTTTCTGTTATTTTAGATGTTCCCAGGAATATTTGGAAGCGAACTATGCGTCCATTGAGTGATTTTGGGTTTGGTAAAAGGAGCATCTGGGAAGGTGGGGTTGGGTTGTTTATCGTTTCGGGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E548526" ref_strand="+" ref_description="SGN-E548526 [TUS-62-A6]">
      <seq>gtcagtggttgatctgcgctagggttgcttccagcttgaaccttcctatatgcttccattttgttgatcttcaatctcgattttcaatttctccagctcaatttttatctatagaacaagaaaaagtgtataattttggaaagacaagaaaagaaaactagatgatgtctggaaatgctttagtccatgtatcaacaaattctactgttttccccatcatacccagtagaagaaatgtgttgggtgatcgttttctgtgtataaaatcaccaatcaggcctaaaaatcgaacctttagtgtgaaagcaatgtctgcaaatacgggtcatagtcaagaacaagagcaacaacccgagtcatcttccgaccagaaaggtccactttctgttattttagatgttcccaggaatatttggaagcgaactatgcgtccattgagtgattttgggtttggtaaaaggagcatctgggaaggtggggttgggttgtttatcgtttcgggtactgtgttgtgggcactcagcttagcttggttgagaggggttcagctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="81989" stop="83142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82289" g_stop="82842" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E548526" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82289" e_stop="82842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGTGGTTGATCTGCGCTAGGGTTGCTTCCAGCTTGAACCTTCCTATATGCTTCCATTTTGTTGATCTTCAATCTCGATTTTCAATTTCTCCAGCTCAATTTTTATCTATAGAACAAGAAAAAGTGTATAATTTTGGAAAGACAAGAAAAGAAAACTAGATGATGTCTGGAAATGCTTTAGTCCATGTATCAACAAATTCTACTGTTTTCCCCATCATACCCAGTAGAAGAAATGTGTTGGGTGATCGTTTTCTGTGTATAAAATCACCAATCAGGCCTAAAAATCGAACCTTTAGTGTGAAAGCAATGTCTGCAAATACGGGTCATAGTCAAGAACAAGAGCAACAACCCGAGTCATCTTCCGACCAGAAAGGTCCACTTTCTGTTATTTTAGATGTTCCCAGGAATATTTGGAAGCGAACTATGCGTCCATTGAGTGATTTTGGGTTTGGTAAAAGGAGCATCTGGGAAGGTGGGGTTGGGTTGTTTATCGTTTCGGGTACTGTGTTGTTGGCACTCAGCTTAGCTTGGTTGAGAGGGTTTCAGCTGCGG</genome_strand>
        <mrna_strand>GTCAGTGGTTGATCTGCGCTAGGGTTGCTTCCAGCTTGAACCTTCCTATATGCTTCCATTTTGTTGATCTTCAATCTCGATTTTCAATTTCTCCAGCTCAATTTTTATCTATAGAACAAGAAAAAGTGTATAATTTTGGAAAGACAAGAAAAGAAAACTAGATGATGTCTGGAAATGCTTTAGTCCATGTATCAACAAATTCTACTGTTTTCCCCATCATACCCAGTAGAAGAAATGTGTTGGGTGATCGTTTTCTGTGTATAAAATCACCAATCAGGCCTAAAAATCGAACCTTTAGTGTGAAAGCAATGTCTGCAAATACGGGTCATAGTCAAGAACAAGAGCAACAACCCGAGTCATCTTCCGACCAGAAAGGTCCACTTTCTGTTATTTTAGATGTTCCCAGGAATATTTGGAAGCGAACTATGCGTCCATTGAGTGATTTTGGGTTTGGTAAAAGGAGCATCTGGGAAGGTGGGGTTGGGTTGTTTATCGTTTCGGGTACTGTGTTGTGGGCACTCAGCTTAGCTTGGTTGAGAGGGGTTCAGCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541461" ref_strand="+" ref_description="SGN-E541461 [TUS-62-E6]">
      <seq>gtcagtggttgatctgcgctagggttgcttccagcttgaaccttcctatatgcttccattttgttgatcttcaatctcgattttcaatttctccagctcaatttttatctatagaacaagaaaaagtgtataattttggaaagacaagaaaagaaaactagatgatgtctggaaatgctttagtccatgtatcaacaaattctactgttttccccatcatacccagtagaagaaatgtgttgggtgatcgttttctgtgtataaaatcaccaatcaggcctaaaaatcgaacctttagtgtgaaagcaatgtctgcaaatacgggtcatagtcaagaacaagagcaacaacccgagtcatcttccgaccagaaaggtccactttctgttattttagatgttcccaggaatatttggaagcgaactatgcgtccattgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="81989" stop="83028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82289" g_stop="82728" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E541461" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82289" e_stop="82728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGTGGTTGATCTGCGCTAGGGTTGCTTCCAGCTTGAACCTTCCTATATGCTTCCATTTTGTTGATCTTCAATCTCGATTTTCAATTTCTCCAGCTCAATTTTTATCTATAGAACAAGAAAAAGTGTATAATTTTGGAAAGACAAGAAAAGAAAACTAGATGATGTCTGGAAATGCTTTAGTCCATGTATCAACAAATTCTACTGTTTTCCCCATCATACCCAGTAGAAGAAATGTGTTGGGTGATCGTTTTCTGTGTATAAAATCACCAATCAGGCCTAAAAATCGAACCTTTAGTGTGAAAGCAATGTCTGCAAATACGGGTCATAGTCAAGAACAAGAGCAACAACCCGAGTCATCTTCCGACCAGAAAGGTCCACTTTCTGTTATTTTAGATGTTCCCAGGAATATTTGGAAGCGAACTATGCGTCCATTGAGT</genome_strand>
        <mrna_strand>GTCAGTGGTTGATCTGCGCTAGGGTTGCTTCCAGCTTGAACCTTCCTATATGCTTCCATTTTGTTGATCTTCAATCTCGATTTTCAATTTCTCCAGCTCAATTTTTATCTATAGAACAAGAAAAAGTGTATAATTTTGGAAAGACAAGAAAAGAAAACTAGATGATGTCTGGAAATGCTTTAGTCCATGTATCAACAAATTCTACTGTTTTCCCCATCATACCCAGTAGAAGAAATGTGTTGGGTGATCGTTTTCTGTGTATAAAATCACCAATCAGGCCTAAAAATCGAACCTTTAGTGTGAAAGCAATGTCTGCAAATACGGGTCATAGTCAAGAACAAGAGCAACAACCCGAGTCATCTTCCGACCAGAAAGGTCCACTTTCTGTTATTTTAGATGTTCCCAGGAATATTTGGAAGCGAACTATGCGTCCATTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E295668" ref_strand="+" ref_description="SGN-E295668 [cLET-25-J19]">
      <seq>tcagtggttgatctgcgctagggttgcttccagcttgaaccttcctatatgcttccattttgttgatcttcaatctcgattttcaatttctccagctcaatttttatctatagaacaagaaaaagtgtataattttggaaagacaagaaaagaaaactagatgatgtctggaaatgctttagtccatgtatcaacaaattctactgttttccccatcatacccagtagaagaaatgtgttgggtgatcgttttctgtgtataaaatcaccaatcaggcctaaaaatcgaacctttagtgtgaaagcaatgtctgcaaatacgggtcatagtcaagaacaagagcaacaacccgagtcatcttccgaccagaaaggtccactttctgttattttagatgttcccaggaatatttggaagcgaactatgcgtccattgagtgattttgggtttggtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="81990" stop="83046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82290" g_stop="82746" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E295668" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82290" e_stop="82746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTGGTTGATCTGCGCTAGGGTTGCTTCCAGCTTGAACCTTCCTATATGCTTCCATTTTGTTGATCTTCAATCTCGATTTTCAATTTCTCCAGCTCAATTTTTATCTATAGAACAAGAAAAAGTGTATAATTTTGGAAAGACAAGAAAAGAAAACTAGATGATGTCTGGAAATGCTTTAGTCCATGTATCAACAAATTCTACTGTTTTCCCCATCATACCCAGTAGAAGAAATGTGTTGGGTGATCGTTTTCTGTGTATAAAATCACCAATCAGGCCTAAAAATCGAACCTTTAGTGTGAAAGCAATGTCTGCAAATACGGGTCATAGTCAAGAACAAGAGCAACAACCCGAGTCATCTTCCGACCAGAAAGGTCCACTTTCTGTTATTTTAGATGTTCCCAGGAATATTTGGAAGCGAACTATGCGTCCATTGAGTGATTTTGGGTTTGGTAAA</genome_strand>
        <mrna_strand>TCAGTGGTTGATCTGCGCTAGGGTTGCTTCCAGCTTGAACCTTCCTATATGCTTCCATTTTGTTGATCTTCAATCTCGATTTTCAATTTCTCCAGCTCAATTTTTATCTATAGAACAAGAAAAAGTGTATAATTTTGGAAAGACAAGAAAAGAAAACTAGATGATGTCTGGAAATGCTTTAGTCCATGTATCAACAAATTCTACTGTTTTCCCCATCATACCCAGTAGAAGAAATGTGTTGGGTGATCGTTTTCTGTGTATAAAATCACCAATCAGGCCTAAAAATCGAACCTTTAGTGTGAAAGCAATGTCTGCAAATACGGGTCATAGTCAAGAACAAGAGCAACAACCCGAGTCATCTTCCGACCAGAAAGGTCCACTTTCTGTTATTTTAGATGTTCCCAGGAATATTTGGAAGCGAACTATGCGTCCATTGAGTGATTTTGGGTTTGGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731001" ref_strand="+" ref_description="SGN-E731001 [LA25DD09]">
      <seq>ctgcgctaggcatttatgcggcttgaaccttcctatatgcttccattttgttgatcttcaatctcgattttcaatttctccagctcaatttttatctatagaacaagaaaaagtgtataattttggaaagacaagaaaagaaaactagatgatgtctggaaatgctttagtccatgtatcaacaaattctactgttttccccatcatacccagtagaagaaatgtgttgggtgatcgttttctgtgtataaaatcaccaatcaggcctaaaaatcgaacctttagtgtgaaagcaatgtctgcaaatacgggtcatagtcaagaacaagagcaacaacccgagtcatcttccgaccagaaaggtccactttctgttattttagatgttcccaggaatatttggaagcgaactatgcgtccattgagtgattttgggtttggtaaaaggagcatctgggaaggtggggttgggttgtttatcgtttcgggtactgtgttgttggcactcagcttagcttggttgagagggctccagctgcggtctaggtttaggaagtatttagctgtgcttgagtttgagcacgcttgtggcatctgcactggcacacctgttagaatcagaggagtaagtatcggtaatgtgattcgagtcaatccttccttgagaaatgttgaagctgttgttgaggttgaagatgataagatcattattcctcgaaactcgttagttgaggtgaaccagtctggtcttatcatggaaaccatgattgatatcacacctcgagatccaatcccaatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="82018" stop="83528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82302" g_stop="82989" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82990" i_stop="83115" i_length="126">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83116" g_stop="83228" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="801" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E731001" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82302" e_stop="82989"/>
          <exon e_start="83116" e_stop="83228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCGCTAGGGTTGCTTCCAGCTTGAACCTTCCTATATGCTTCCATTTTGTTGATCTTCAATCTCGATTTTCAATTTCTCCAGCTCAATTTTTATCTATAGAACAAGAAAAAGTGTATAATTTTGGAAAGACAAGAAAAGAAAACTAGATGATGTCTGGAAATGCTTTAGTCCATGTATCAACAAATTCTACTGTTTTCCCCATCATACCCAGTAGAAGAAATGTGTTGGGTGATCGTTTTCTGTGTATAAAATCACCAATCAGGCCTAAAAATCGAACCTTTAGTGTGAAAGCAATGTCTGCAAATACGGGTCATAGTCAAGAACAAGAGCAACAACCCGAGTCATCTTCCGACCAGAAAGGTCCACTTTCTGTTATTTTAGATGTTCCCAGGAATATTTGGAAGCGAACTATGCGTCCATTGAGTGATTTTGGGTTTGGTAAAAGGAGCATCTGGGAAGGTGGGGTTGGGTTGTTTATCGTTTCGGGTACTGTGTTGTTGGCACTCAGCTTAGCTTGGTTGAGAGGGTTTCAGCTGCGGTCTAGGTTTAGGAAGTATTTAGCTGTGCTTGAGTTTGAGCAGGCTTGTGGCATCTGCACTGGCACACCTGTTAGAATCAGAGGAGTAAGTATTGGTAATGTGATTCGAGTCAATCCTTCCTTGAGAAATGTTGAAGCTGTTGTTGAGGTGAGCGACATGTATCTTTGCTGAACACATTTACTGAATTATATATATTTCTTTTGAAGTAATAAGTAGTTGTTCTATAGTTGCTTGTGTATGTTTTGATCTTAAACATTGATTATGTGTTTATAGGTTGAAGATGATAAGATCATTATTCCTCGAAACTCGTTAGTTGAGGTGAACCAGTCTGGTCTTATCATGGAAACCATGATTGATATCACACCTCGAGATCCAATCCCAATACC</genome_strand>
        <mrna_strand>CTGCGCTAGGCATTTATGCGGCTTGAACCTTCCTATATGCTTCCATTTTGTTGATCTTCAATCTCGATTTTCAATTTCTCCAGCTCAATTTTTATCTATAGAACAAGAAAAAGTGTATAATTTTGGAAAGACAAGAAAAGAAAACTAGATGATGTCTGGAAATGCTTTAGTCCATGTATCAACAAATTCTACTGTTTTCCCCATCATACCCAGTAGAAGAAATGTGTTGGGTGATCGTTTTCTGTGTATAAAATCACCAATCAGGCCTAAAAATCGAACCTTTAGTGTGAAAGCAATGTCTGCAAATACGGGTCATAGTCAAGAACAAGAGCAACAACCCGAGTCATCTTCCGACCAGAAAGGTCCACTTTCTGTTATTTTAGATGTTCCCAGGAATATTTGGAAGCGAACTATGCGTCCATTGAGTGATTTTGGGTTTGGTAAAAGGAGCATCTGGGAAGGTGGGGTTGGGTTGTTTATCGTTTCGGGTACTGTGTTGTTGGCACTCAGCTTAGCTTGGTTGAGAGGGCTCCAGCTGCGGTCTAGGTTTAGGAAGTATTTAGCTGTGCTTGAGTTTGAGCACGCTTGTGGCATCTGCACTGGCACACCTGTTAGAATCAGAGGAGTAAGTATCGGTAATGTGATTCGAGTCAATCCTTCCTTGAGAAATGTTGAAGCTGTTGTTGAG..............................................................................................................................GTTGAAGATGATAAGATCATTATTCCTCGAAACTCGTTAGTTGAGGTGAACCAGTCTGGTCTTATCATGGAAACCATGATTGATATCACACCTCGAGATCCAATCCCAATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331648" ref_strand="+" ref_description="SGN-E331648 [cTOD-7-A14]">
      <seq>ttcctcgaaactcgttagttgaggtgaaccagtctggtcttatcatggaaaccatgattgatatcacacctcgagatccaatcccaataccttctgcagggcccctggatccggattgtgttaaggagggtctgataatttgcgacaggcaaaagattaaaggacaacaaggggttagtctagatgcattggttggaatattcacacgtcttggccgtgaagcagaagaaattggtttggcgaatacctatgctttggctgagagagctctaaatgttattgaggaggcgcgaccgctgcttacaaaggtttgatgcactttacatttattcacctcccatttcattctttttgtatggatgatgtttaatctgcttacaaaggtttgatgcactttacatttattcacctcccatttcattctttttgtatggatgatgtttaatattaaggataaaagaagaaggaagtctaacaaacagatgaatttaacttctgtacttttagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="82838" stop="83945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83138" g_stop="83645" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E331648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83138" e_stop="83645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCGAAACTCGTTAGTTGAGGTGAACCAGTCTGGTCTTATCATGGAAACCATGATTGATATCACACCTCGAGATCCAATCCCAATACCTTCTGCAGGGCCCCTGGATCCGGATTGTGTTAAGGAGGGTCTGATAATTTGCGACAGGCAAAAGATTAAAGGACAACAAGGGGTTAGTCTAGATGCATTGGTTGGAATATTCACACGTCTTGGCCGTGAAGCAGAAGAAATTGGTTTGGCGAATACCTATGCTTTGGCTGAGAGAGCTCTAAATGTTATTGAGGAGGCGCGACCGCTGCTTACAAAGGTTTGATGCACTTTACATTTATTCACCTCCCATTTCATTCTTTTTGTATGGATGATGTTTAATCTGCTTACAAAGGTTTGATGCACTTTACATTTATTCACCTCCCATTTCATTCTTTTTGTATGGATGATGTTTAATATTAAGGATAAAAGAAGAAGGAAGTCTAACAAACAGATGAATTTAACTTCTGTACTTTTAGC</genome_strand>
        <mrna_strand>TTCCTCGAAACTCGTTAGTTGAGGTGAACCAGTCTGGTCTTATCATGGAAACCATGATTGATATCACACCTCGAGATCCAATCCCAATACCTTCTGCAGGGCCCCTGGATCCGGATTGTGTTAAGGAGGGTCTGATAATTTGCGACAGGCAAAAGATTAAAGGACAACAAGGGGTTAGTCTAGATGCATTGGTTGGAATATTCACACGTCTTGGCCGTGAAGCAGAAGAAATTGGTTTGGCGAATACCTATGCTTTGGCTGAGAGAGCTCTAAATGTTATTGAGGAGGCGCGACCGCTGCTTACAAAGGTTTGATGCACTTTACATTTATTCACCTCCCATTTCATTCTTTTTGTATGGATGATGTTTAATCTGCTTACAAAGGTTTGATGCACTTTACATTTATTCACCTCCCATTTCATTCTTTTTGTATGGATGATGTTTAATATTAAGGATAAAAGAAGAAGGAAGTCTAACAAACAGATGAATTTAACTTCTGTACTTTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541459" ref_strand="+" ref_description="SGN-E541459 [TUS-62-E6](-)">
      <seq>gagatccaatcccaataccttctgcagggcccctggatccggatggtgtaaaggagggtctgataatttgcgacaggcaaaagattaaaggacaacaaggggttagtctagatgcattggttggaatattcacacgtcttggccgtgaagcagaagaaattggtttggcgaatacctatgctttggctgagagagctctaaatgttattgaggaggcgcgaccgctgcttacaaagattaaagccatggctgaggatgtccaacctatgctagctgatgttcgtgatagtggcttactgaaggaagttgagagtttaacccgaagtctggcactaacatctgaagatataaggagagtgcactccacggtcatgactcctgagaacaccgaattgatacggaagtctatttatacgctggtcttcactttgaagaatgttgagagcattagctccgacattttgggattcactggcgatgaagctactaggcgcaatttgaaaatgcttatcaaatcgctaagcaggctattgtaaagttgattaatgtcttgcaatactactagcctgagagaggttccaaagaggagaggttgttctgtttggcattgacaagagtccttgggctatggattataggttttctgctaattcaaaaggatttcaaggtgtgaaagcttccctcttcacctttgttctgtgttagaaattgcaatataaatgtcattagaagatggtttcactaatatgaattttgattgtttggtcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="82910" stop="86263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83210" g_stop="83445" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83446" i_stop="84796" i_length="1351">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84797" g_stop="84912" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="352" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84913" i_stop="85465" i_length="553">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85466" g_stop="85556" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="443" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85557" i_stop="85638" i_length="82">
            <donor d_prob="0.236" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85639" g_stop="85959" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="764" r_length="321" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="768" polyA_stop="778"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E541459" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83210" e_stop="83445"/>
          <exon e_start="84797" e_stop="84912"/>
          <exon e_start="85466" e_stop="85556"/>
          <exon e_start="85639" e_stop="85959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATCCAATCCCAATACCTTCTGCAGGGCCCCTGGATCCGGATTGTGTTAAGGAGGGTCTGATAATTTGCGACAGGCAAAAGATTAAAGGACAACAAGGGGTTAGTCTAGATGCATTGGTTGGAATATTCACACGTCTTGGCCGTGAAGCAGAAGAAATTGGTTTGGCGAATACCTATGCTTTGGCTGAGAGAGCTCTAAATGTTATTGAGGAGGCGCGACCGCTGCTTACAAAGGTTTGATGCACTTTACATTTATTCACCTCCCATTTCATTCTTTTTGTATGGATGATGTTTAATCTGCTTACAAAGGTTTGATGCACTTTACATTTATTCACCTCCCATTTCATTCTTTTTGTATGGATGATGTTTAATATTAAGGATAAAAGAAGAAGGAAGTCTAACAAACAGATGAATTTAACTTCTGTACTTTTAGCTTAAGATATGGTTATGCAATGATATAACTTGTTGAAATTCTGTTCTTCTCTATTTATGATTCATAACATCTTTATGATAAAAAATTTGTTCTGTATTTTTTTCTTTAAAGACCTAGAGTCATGTATGGAAACATTTTTAAAAACACTGATATTCTAAGCTTAGGTTAAATCACACATCTCTACTTAGTTCTTTCCACCAACTCACTATGTTCTACACGTCTACACCCTATAAAAGTGTAATGCGTGATGTATGAGTTGTACTAGAATCTTATGGACTTCAATCCTCTTTGACAGCATCTGTGTAAAGAGCATTGGTGTAGATATTTCACTGTAATGAAATTTGTAAGTTGGATAACACTTAAATTTGGAGAACTCTTAGTTAAAAGACCCTGGTTAAGTTAATATGTTTCTGGAAGTGCAGAAAGTGATTACTGAGGTCATTAGCTTGGGAAAGCCCACAGTATATTATACCCCAAGTTATGATCTGCAGAGGAGATATGTGAATGAATTGTCAGACAAGATCTGCTTGATTGCTTTGCAATTCTTTTTATGAAGGATTTTTTTGTCACATGTGCATGCAAAACTAATTTGAGTTAGAATATCTTGTTTTGAATGCAGTAAAACTATTAATCAAGTGCTTAATAATACAAGATTAATTTTATAAGTCTGCTTGACTATTATTATCTCTAGTATGTGTATCTGTTTGAGAATTCTGTCAGACACTAACATCTCGTGCCTCATGCAACCATTTCTATTTACAGAAAAATGTTCTCTTGTTGACAAAATTAGTCTAATCCAGTTTGGACTTATTGATGTTCATTCAGTACACTAATATGTCATGTAGTGCATATTCTAAATAATATGTCCAAAGCAAGTGCACAACTATTGTTAGTTTGTCAGATGTTAGGTGGTAAGTGTAAAACTGTGAGTTGTAAGTACGGCTGCAATATGTGTTTTCCTATACCACATTCATCAGTATCAAGCTATAGGACCATTTATAGAGGAGGAGGGGAGAACTGAAACAGCGGTCAATGTTGGGCATACAGTTGCACTCATCCTATTATGCTACTTGAGCAATTTATGTGTTCCTTGCAGGTATTTAGTATATTCTCATGTATGAACATTGTACCTTTGATGTATTGACACCTCAGATTAAAGCCATGGCTGAGGATGTCCAACCTATGCTAGCTGATGTTCGTGATAGTGGCTTACTGAAGGAAGTTGAGAGTTTAACCCGAAGTCTGGCACTAACATCTGAAGATATAAGGTAAATCAGTAACTTATGGTAGCTTCTTTTCTAAGGCAAGGGTGAAGTAGTCCTAGACCTTTATAAGATATACTTGGTACTTGTTAGTTTGACTGAGAATAGAACTGGGTGATACAAATTAAGTTTTGCTCATGCTGCTCACTTGTGAGCTATATATTTGGAGTGAGACCAGTTATGTAAGAAGTTCAAATAAGCAGATAGCAAGTTCAATGAAAAAGGCTTCACAAACATGGCATGCTTTTGTACATTATCAAGAATTCTAGATAGCCACATATTGAACTCATGCTTTTACCCACGTCATAGGCCATTCTCCACTAGGACACAACTTTGGATGCTTTCTTGGTTGAGTATACATGATGTGAAAAGGGCTAAACATTTCTAATTTCCTGGTCGCAACAGTGAGTTCCTTTTATTGATATCAAAAGTGGAGTTCAAAAGATAGTAACTCTTCTAGGTGATCCCCAAGTTATGCATCTACTTTGAGGTTGCTTCTGTTACTGTTTGCTTTAGGCATGGAATCTGCTTTTACAGTGTTTTATGAACCAAATTGCAGGAGAGTGCACTCCACGGTCATGACTCCTGAGAACACCGAATTGATACGGAAGTCTATTTATACGCTGGTCTTCACTTTGAAGAATGTTGAGGTAATTTCCCGCGTGGTAATAGTCATTCTAACACGTCAATCACTTTCATGCTTTGTGATTCATCATTTGTCACATTATGCAGAGCATTAGCTCCGACATTTTGGGATTCACTGGCGATGAAGCTACTAGGCGCAATTTGAAAATGCTTATCAAATCGCTAAGCAGGCTATTGTAAAGTTGATTAATGTCTTGCAATACTACTAGCCTGAGAGAGGTTCCAAAGAGGAGAGGTTGTTCTGTTTGGCATTGACAAGAGTCCTTGGGCTATGGATTATAGGTTTTCTGCTAATCCAAAAGGATTTCAAGGTGTGAAAGCTTCCCTCTTCACCTTTGTTCTGTGTTAGAAATTGCAATATAAATGTCATTAGAAGATGGTTTCACTAATATGAATTTTGATTGTTTG</genome_strand>
        <mrna_strand>GAGATCCAATCCCAATACCTTCTGCAGGGCCCCTGGATCCGGATGGTGTAAAGGAGGGTCTGATAATTTGCGACAGGCAAAAGATTAAAGGACAACAAGGGGTTAGTCTAGATGCATTGGTTGGAATATTCACACGTCTTGGCCGTGAAGCAGAAGAAATTGGTTTGGCGAATACCTATGCTTTGGCTGAGAGAGCTCTAAATGTTATTGAGGAGGCGCGACCGCTGCTTACAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAGCCATGGCTGAGGATGTCCAACCTATGCTAGCTGATGTTCGTGATAGTGGCTTACTGAAGGAAGTTGAGAGTTTAACCCGAAGTCTGGCACTAACATCTGAAGATATAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGTGCACTCCACGGTCATGACTCCTGAGAACACCGAATTGATACGGAAGTCTATTTATACGCTGGTCTTCACTTTGAAGAATGTTGAG..................................................................................AGCATTAGCTCCGACATTTTGGGATTCACTGGCGATGAAGCTACTAGGCGCAATTTGAAAATGCTTATCAAATCGCTAAGCAGGCTATTGTAAAGTTGATTAATGTCTTGCAATACTACTAGCCTGAGAGAGGTTCCAAAGAGGAGAGGTTGTTCTGTTTGGCATTGACAAGAGTCCTTGGGCTATGGATTATAGGTTTTCTGCTAATTCAAAAGGATTTCAAGGTGTGAAAGCTTCCCTCTTCACCTTTGTTCTGTGTTAGAAATTGCAATATAAATGTCATTAGAAGATGGTTTCACTAATATGAATTTTGATTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541294" ref_strand="+" ref_description="SGN-E541294 [TUS-62-A6](-)">
      <seq>agatccaatcccaataccttctgcagggcccctggatccggattgtgttaaggagggtctgataatttgcgacaggcaaaagattaaaggacaacaaggggttagtctagatgcattggttggaatattcacacgtcttggccgtgaagcagaagaaattggtttggcgaatacctatgctttggctgagagagctctaaatgttattgaggaggcgcgaccgctgcttacaaagattaaagccatggctgaggatgtccaacctatgctagctgatgttcgtgatagtggcttactgaaggaagttgagagtttaacccgaagtctggcactaacatctgaagatataaggagagtgcactccacggtcatgactcctgagaacaccgaattgatacggaagtctatttatacgctggtcttcactttgaagaatgttgagagcattagctccgacattttgggattcactggcgatgaagctactaggcgcaatttgaaaatgcttatcaaatcgctaagcaggctattgtaaagttgattaatgtcttgcaatactactagcctgagagaggttccaaagaggagaggttgttctgtttggcattgacaagagtccttgggctatggattataggttttctgctaattcaaaaggatttcaaggtgtgaaagcttccctcttcacctttgttctgtgttagaaattgcaatataaatgtcattagaagatggtttcactaatatgaattttgattgtttggtcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="82911" stop="86263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83211" g_stop="83445" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83446" i_stop="84796" i_length="1351">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84797" g_stop="84912" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="351" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84913" i_stop="85465" i_length="553">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85466" g_stop="85556" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="442" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85557" i_stop="85638" i_length="82">
            <donor d_prob="0.236" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85639" g_stop="85959" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="763" r_length="321" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="767" polyA_stop="777"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E541294" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83211" e_stop="83445"/>
          <exon e_start="84797" e_stop="84912"/>
          <exon e_start="85466" e_stop="85556"/>
          <exon e_start="85639" e_stop="85959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCCAATCCCAATACCTTCTGCAGGGCCCCTGGATCCGGATTGTGTTAAGGAGGGTCTGATAATTTGCGACAGGCAAAAGATTAAAGGACAACAAGGGGTTAGTCTAGATGCATTGGTTGGAATATTCACACGTCTTGGCCGTGAAGCAGAAGAAATTGGTTTGGCGAATACCTATGCTTTGGCTGAGAGAGCTCTAAATGTTATTGAGGAGGCGCGACCGCTGCTTACAAAGGTTTGATGCACTTTACATTTATTCACCTCCCATTTCATTCTTTTTGTATGGATGATGTTTAATCTGCTTACAAAGGTTTGATGCACTTTACATTTATTCACCTCCCATTTCATTCTTTTTGTATGGATGATGTTTAATATTAAGGATAAAAGAAGAAGGAAGTCTAACAAACAGATGAATTTAACTTCTGTACTTTTAGCTTAAGATATGGTTATGCAATGATATAACTTGTTGAAATTCTGTTCTTCTCTATTTATGATTCATAACATCTTTATGATAAAAAATTTGTTCTGTATTTTTTTCTTTAAAGACCTAGAGTCATGTATGGAAACATTTTTAAAAACACTGATATTCTAAGCTTAGGTTAAATCACACATCTCTACTTAGTTCTTTCCACCAACTCACTATGTTCTACACGTCTACACCCTATAAAAGTGTAATGCGTGATGTATGAGTTGTACTAGAATCTTATGGACTTCAATCCTCTTTGACAGCATCTGTGTAAAGAGCATTGGTGTAGATATTTCACTGTAATGAAATTTGTAAGTTGGATAACACTTAAATTTGGAGAACTCTTAGTTAAAAGACCCTGGTTAAGTTAATATGTTTCTGGAAGTGCAGAAAGTGATTACTGAGGTCATTAGCTTGGGAAAGCCCACAGTATATTATACCCCAAGTTATGATCTGCAGAGGAGATATGTGAATGAATTGTCAGACAAGATCTGCTTGATTGCTTTGCAATTCTTTTTATGAAGGATTTTTTTGTCACATGTGCATGCAAAACTAATTTGAGTTAGAATATCTTGTTTTGAATGCAGTAAAACTATTAATCAAGTGCTTAATAATACAAGATTAATTTTATAAGTCTGCTTGACTATTATTATCTCTAGTATGTGTATCTGTTTGAGAATTCTGTCAGACACTAACATCTCGTGCCTCATGCAACCATTTCTATTTACAGAAAAATGTTCTCTTGTTGACAAAATTAGTCTAATCCAGTTTGGACTTATTGATGTTCATTCAGTACACTAATATGTCATGTAGTGCATATTCTAAATAATATGTCCAAAGCAAGTGCACAACTATTGTTAGTTTGTCAGATGTTAGGTGGTAAGTGTAAAACTGTGAGTTGTAAGTACGGCTGCAATATGTGTTTTCCTATACCACATTCATCAGTATCAAGCTATAGGACCATTTATAGAGGAGGAGGGGAGAACTGAAACAGCGGTCAATGTTGGGCATACAGTTGCACTCATCCTATTATGCTACTTGAGCAATTTATGTGTTCCTTGCAGGTATTTAGTATATTCTCATGTATGAACATTGTACCTTTGATGTATTGACACCTCAGATTAAAGCCATGGCTGAGGATGTCCAACCTATGCTAGCTGATGTTCGTGATAGTGGCTTACTGAAGGAAGTTGAGAGTTTAACCCGAAGTCTGGCACTAACATCTGAAGATATAAGGTAAATCAGTAACTTATGGTAGCTTCTTTTCTAAGGCAAGGGTGAAGTAGTCCTAGACCTTTATAAGATATACTTGGTACTTGTTAGTTTGACTGAGAATAGAACTGGGTGATACAAATTAAGTTTTGCTCATGCTGCTCACTTGTGAGCTATATATTTGGAGTGAGACCAGTTATGTAAGAAGTTCAAATAAGCAGATAGCAAGTTCAATGAAAAAGGCTTCACAAACATGGCATGCTTTTGTACATTATCAAGAATTCTAGATAGCCACATATTGAACTCATGCTTTTACCCACGTCATAGGCCATTCTCCACTAGGACACAACTTTGGATGCTTTCTTGGTTGAGTATACATGATGTGAAAAGGGCTAAACATTTCTAATTTCCTGGTCGCAACAGTGAGTTCCTTTTATTGATATCAAAAGTGGAGTTCAAAAGATAGTAACTCTTCTAGGTGATCCCCAAGTTATGCATCTACTTTGAGGTTGCTTCTGTTACTGTTTGCTTTAGGCATGGAATCTGCTTTTACAGTGTTTTATGAACCAAATTGCAGGAGAGTGCACTCCACGGTCATGACTCCTGAGAACACCGAATTGATACGGAAGTCTATTTATACGCTGGTCTTCACTTTGAAGAATGTTGAGGTAATTTCCCGCGTGGTAATAGTCATTCTAACACGTCAATCACTTTCATGCTTTGTGATTCATCATTTGTCACATTATGCAGAGCATTAGCTCCGACATTTTGGGATTCACTGGCGATGAAGCTACTAGGCGCAATTTGAAAATGCTTATCAAATCGCTAAGCAGGCTATTGTAAAGTTGATTAATGTCTTGCAATACTACTAGCCTGAGAGAGGTTCCAAAGAGGAGAGGTTGTTCTGTTTGGCATTGACAAGAGTCCTTGGGCTATGGATTATAGGTTTTCTGCTAATCCAAAAGGATTTCAAGGTGTGAAAGCTTCCCTCTTCACCTTTGTTCTGTGTTAGAAATTGCAATATAAATGTCATTAGAAGATGGTTTCACTAATATGAATTTTGATTGTTTG</genome_strand>
        <mrna_strand>AGATCCAATCCCAATACCTTCTGCAGGGCCCCTGGATCCGGATTGTGTTAAGGAGGGTCTGATAATTTGCGACAGGCAAAAGATTAAAGGACAACAAGGGGTTAGTCTAGATGCATTGGTTGGAATATTCACACGTCTTGGCCGTGAAGCAGAAGAAATTGGTTTGGCGAATACCTATGCTTTGGCTGAGAGAGCTCTAAATGTTATTGAGGAGGCGCGACCGCTGCTTACAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAGCCATGGCTGAGGATGTCCAACCTATGCTAGCTGATGTTCGTGATAGTGGCTTACTGAAGGAAGTTGAGAGTTTAACCCGAAGTCTGGCACTAACATCTGAAGATATAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGTGCACTCCACGGTCATGACTCCTGAGAACACCGAATTGATACGGAAGTCTATTTATACGCTGGTCTTCACTTTGAAGAATGTTGAG..................................................................................AGCATTAGCTCCGACATTTTGGGATTCACTGGCGATGAAGCTACTAGGCGCAATTTGAAAATGCTTATCAAATCGCTAAGCAGGCTATTGTAAAGTTGATTAATGTCTTGCAATACTACTAGCCTGAGAGAGGTTCCAAAGAGGAGAGGTTGTTCTGTTTGGCATTGACAAGAGTCCTTGGGCTATGGATTATAGGTTTTCTGCTAATTCAAAAGGATTTCAAGGTGTGAAAGCTTCCCTCTTCACCTTTGTTCTGTGTTAGAAATTGCAATATAAATGTCATTAGAAGATGGTTTCACTAATATGAATTTTGATTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539581" ref_strand="+" ref_description="SGN-E539581 [TUS-59-G17](-)">
      <seq>ggatgtccaacctatgctagctgatgttcgtgatagtggcttactgaaggaagttgagagtttaacccgaagtctggcactaacatctgaagatataaggagagtgcactccacggtcatgactcctgagaacaccgaattgatacggaagtctatttatacgctggtcttcactttgaagaatgttgagagcattagctccgacattttgggattcactggcgatgaagctactaggcgcaatttgaaaatgcttatcaaatcgctaagcaggctattgtaaagttgattaatgtcttgcaatactactagcctgagagaggttccaaagaggagaggttgttctgtttggcattgacaagagtccttgggctatggattataggttttctgctaattcaaaaggatttcaaggtgtgaaagcttccctcttcacctttgttctgtgttagaaattgcaatataaatgtcattagaagatggtttcactaatatgaattttgattgtttggtcactttctcttttgagtttcctaatatcagcacctcatgttttcataaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="84514" stop="86309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84814" g_stop="84912" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84913" i_stop="85465" i_length="553">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85466" g_stop="85556" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="190" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85557" i_stop="85638" i_length="82">
            <donor d_prob="0.236" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85639" g_stop="86009" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="561" r_length="371" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="562" polyA_stop="589"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E539581" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84814" e_stop="84912"/>
          <exon e_start="85466" e_stop="85556"/>
          <exon e_start="85639" e_stop="86009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGTCCAACCTATGCTAGCTGATGTTCGTGATAGTGGCTTACTGAAGGAAGTTGAGAGTTTAACCCGAAGTCTGGCACTAACATCTGAAGATATAAGGTAAATCAGTAACTTATGGTAGCTTCTTTTCTAAGGCAAGGGTGAAGTAGTCCTAGACCTTTATAAGATATACTTGGTACTTGTTAGTTTGACTGAGAATAGAACTGGGTGATACAAATTAAGTTTTGCTCATGCTGCTCACTTGTGAGCTATATATTTGGAGTGAGACCAGTTATGTAAGAAGTTCAAATAAGCAGATAGCAAGTTCAATGAAAAAGGCTTCACAAACATGGCATGCTTTTGTACATTATCAAGAATTCTAGATAGCCACATATTGAACTCATGCTTTTACCCACGTCATAGGCCATTCTCCACTAGGACACAACTTTGGATGCTTTCTTGGTTGAGTATACATGATGTGAAAAGGGCTAAACATTTCTAATTTCCTGGTCGCAACAGTGAGTTCCTTTTATTGATATCAAAAGTGGAGTTCAAAAGATAGTAACTCTTCTAGGTGATCCCCAAGTTATGCATCTACTTTGAGGTTGCTTCTGTTACTGTTTGCTTTAGGCATGGAATCTGCTTTTACAGTGTTTTATGAACCAAATTGCAGGAGAGTGCACTCCACGGTCATGACTCCTGAGAACACCGAATTGATACGGAAGTCTATTTATACGCTGGTCTTCACTTTGAAGAATGTTGAGGTAATTTCCCGCGTGGTAATAGTCATTCTAACACGTCAATCACTTTCATGCTTTGTGATTCATCATTTGTCACATTATGCAGAGCATTAGCTCCGACATTTTGGGATTCACTGGCGATGAAGCTACTAGGCGCAATTTGAAAATGCTTATCAAATCGCTAAGCAGGCTATTGTAAAGTTGATTAATGTCTTGCAATACTACTAGCCTGAGAGAGGTTCCAAAGAGGAGAGGTTGTTCTGTTTGGCATTGACAAGAGTCCTTGGGCTATGGATTATAGGTTTTCTGCTAATCCAAAAGGATTTCAAGGTGTGAAAGCTTCCCTCTTCACCTTTGTTCTGTGTTAGAAATTGCAATATAAATGTCATTAGAAGATGGTTTCACTAATATGAATTTTGATTGTTTGGTCACTTTCTCTTTTGAGTTTCCTAATATCAGCACCTCATGTTTTCATAA</genome_strand>
        <mrna_strand>GGATGTCCAACCTATGCTAGCTGATGTTCGTGATAGTGGCTTACTGAAGGAAGTTGAGAGTTTAACCCGAAGTCTGGCACTAACATCTGAAGATATAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGTGCACTCCACGGTCATGACTCCTGAGAACACCGAATTGATACGGAAGTCTATTTATACGCTGGTCTTCACTTTGAAGAATGTTGAG..................................................................................AGCATTAGCTCCGACATTTTGGGATTCACTGGCGATGAAGCTACTAGGCGCAATTTGAAAATGCTTATCAAATCGCTAAGCAGGCTATTGTAAAGTTGATTAATGTCTTGCAATACTACTAGCCTGAGAGAGGTTCCAAAGAGGAGAGGTTGTTCTGTTTGGCATTGACAAGAGTCCTTGGGCTATGGATTATAGGTTTTCTGCTAATTCAAAAGGATTTCAAGGTGTGAAAGCTTCCCTCTTCACCTTTGTTCTGTGTTAGAAATTGCAATATAAATGTCATTAGAAGATGGTTTCACTAATATGAATTTTGATTGTTTGGTCACTTTCTCTTTTGAGTTTCCTAATATCAGCACCTCATGTTTTCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285176" ref_strand="+" ref_description="SGN-E285176 [cLER-20-B3]">
      <seq>gatgtccaacctatgctagctgatgttcgtgatagtggcttactgaaggaagttgagagtttaacccgaagtctggcactaacatctgaagatataaggagagtgcactccacggtcatgactcctgagaacaccgaattgatacggaagtctatttatacgctggtcttcactttgaagaatgttgagagcattagctccgacattttgggattcactggcgatgaagctactaggcgcaatttgaaaatgcttatcaaatcgctaagcaggctattgtaaagttgattaatgtcttgcaatactactagcctgagagaggttccaaagaggagaggttgttctgtttggcattgacaagagtccttgggctatggattataggttttctgctaattcaaaaggatttcaaggtgtgaaagcttccctcttcacctttgttctgtgttagaaattgcaatataaatgtcattagaagatggtttcactaatatgaattttgattgtttggtcactttctcttttgagtttcctaatatcagcacctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="84515" stop="86299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84815" g_stop="84912" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84913" i_stop="85465" i_length="553">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85466" g_stop="85556" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="189" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85557" i_stop="85638" i_length="82">
            <donor d_prob="0.236" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85639" g_stop="85999" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="550" r_length="361" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-E285176" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84815" e_stop="84912"/>
          <exon e_start="85466" e_stop="85556"/>
          <exon e_start="85639" e_stop="85999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTCCAACCTATGCTAGCTGATGTTCGTGATAGTGGCTTACTGAAGGAAGTTGAGAGTTTAACCCGAAGTCTGGCACTAACATCTGAAGATATAAGGTAAATCAGTAACTTATGGTAGCTTCTTTTCTAAGGCAAGGGTGAAGTAGTCCTAGACCTTTATAAGATATACTTGGTACTTGTTAGTTTGACTGAGAATAGAACTGGGTGATACAAATTAAGTTTTGCTCATGCTGCTCACTTGTGAGCTATATATTTGGAGTGAGACCAGTTATGTAAGAAGTTCAAATAAGCAGATAGCAAGTTCAATGAAAAAGGCTTCACAAACATGGCATGCTTTTGTACATTATCAAGAATTCTAGATAGCCACATATTGAACTCATGCTTTTACCCACGTCATAGGCCATTCTCCACTAGGACACAACTTTGGATGCTTTCTTGGTTGAGTATACATGATGTGAAAAGGGCTAAACATTTCTAATTTCCTGGTCGCAACAGTGAGTTCCTTTTATTGATATCAAAAGTGGAGTTCAAAAGATAGTAACTCTTCTAGGTGATCCCCAAGTTATGCATCTACTTTGAGGTTGCTTCTGTTACTGTTTGCTTTAGGCATGGAATCTGCTTTTACAGTGTTTTATGAACCAAATTGCAGGAGAGTGCACTCCACGGTCATGACTCCTGAGAACACCGAATTGATACGGAAGTCTATTTATACGCTGGTCTTCACTTTGAAGAATGTTGAGGTAATTTCCCGCGTGGTAATAGTCATTCTAACACGTCAATCACTTTCATGCTTTGTGATTCATCATTTGTCACATTATGCAGAGCATTAGCTCCGACATTTTGGGATTCACTGGCGATGAAGCTACTAGGCGCAATTTGAAAATGCTTATCAAATCGCTAAGCAGGCTATTGTAAAGTTGATTAATGTCTTGCAATACTACTAGCCTGAGAGAGGTTCCAAAGAGGAGAGGTTGTTCTGTTTGGCATTGACAAGAGTCCTTGGGCTATGGATTATAGGTTTTCTGCTAATCCAAAAGGATTTCAAGGTGTGAAAGCTTCCCTCTTCACCTTTGTTCTGTGTTAGAAATTGCAATATAAATGTCATTAGAAGATGGTTTCACTAATATGAATTTTGATTGTTTGGTCACTTTCTCTTTTGAGTTTCCTAATATCAGCACCTCAT</genome_strand>
        <mrna_strand>GATGTCCAACCTATGCTAGCTGATGTTCGTGATAGTGGCTTACTGAAGGAAGTTGAGAGTTTAACCCGAAGTCTGGCACTAACATCTGAAGATATAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGTGCACTCCACGGTCATGACTCCTGAGAACACCGAATTGATACGGAAGTCTATTTATACGCTGGTCTTCACTTTGAAGAATGTTGAG..................................................................................AGCATTAGCTCCGACATTTTGGGATTCACTGGCGATGAAGCTACTAGGCGCAATTTGAAAATGCTTATCAAATCGCTAAGCAGGCTATTGTAAAGTTGATTAATGTCTTGCAATACTACTAGCCTGAGAGAGGTTCCAAAGAGGAGAGGTTGTTCTGTTTGGCATTGACAAGAGTCCTTGGGCTATGGATTATAGGTTTTCTGCTAATTCAAAAGGATTTCAAGGTGTGAAAGCTTCCCTCTTCACCTTTGTTCTGTGTTAGAAATTGCAATATAAATGTCATTAGAAGATGGTTTCACTAATATGAATTTTGATTGTTTGGTCACTTTCTCTTTTGAGTTTCCTAATATCAGCACCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>220</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2733" PGL_stop="1955"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2733" e_stop="1955"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="2733" e_stop="1955" e_length="779"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2733" stop="2011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2727" stop="1955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332539" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCAAATTTAGTGCATGCCTATCTTGCAAGGCGTGCTCTTGATTACCTGATTGGGTTCAACATTTCTCCACTTCTGTGGAGGAAATTACCTGGTTGTCAATCTGCTGGTCGGGTTCAGTCTGCTGCCCTATCACTTATATGTGACAGAGAAATGGAAATTGATGGATTCAAACCACAGGAGTATTGGACAGTCCTGGTTGAATTTAAGAAGAACAAAAACCTAGATTTAGCCAATAACTTTTTGTCGTCCCATTTGACCCATTTTGATACCAAGAAATTAAGTCAGTTCTCTGTTAGCTCTCATACCGAAGCAATGGAAATTGAAGGGAAGATAAATTCATCAAACTTTGAAGTTCTTAGCTCTAAGATAACCAAAAAGCAGAGAAACCCCTCTCCTCCTTATATAACATCAACACTTCAGCAAGATGCCGCAAACAAATTGGACTTTTCATCAACATATACGATGAAACTTGCACAAAAGCTATATGAGGGAATCCAGTTATCTGATGGCAAGTCAACAGGATTGATAACTTACATCAGAACAGATGGCTTGCACATTTCAGATGAAGCTACCAAGGACATTCAATCCTATATCAGTGAAAGGTATGGACAGAATTTTGCATCAAAGAATGGTCGCAAATACTTCAAGAAGGTGAAGAATGCTCAAGAGGCCCATGAAGCTATTAGACCCACTGATATCCGAAGGTTACCCTCAAAGCTTGTCGGGGTGCTGGATGATGATGCACTTAAGCTATACAAACTTATATGGTCCCGTACCA</gDNA_template>
            <first_frame> R  K  F  S  A  C  L  S  C  K  A  C  S  *  L  P  D  W  V  Q  H  F  S  T  S  V  E  E  I  T  W  L  S  I  C  W  S  G  S  V  C  C  P  I  T  Y  M  *  Q  R  N  G  N  *  W  I  Q  T  T  G  V  L  D  S  P  G  *  I  *  E  E  Q  K  P  R  F  S  Q  *  L  F  V  V  P  F  D  P  F  *  Y  Q  E  I  K  S  V  L  C  *  L  S  Y  R  S  N  G  N  *  R  E  D  K  F  I  K  L  *  S  S  *  L  *  D  N  Q  K  A  E  K  P  L  S  S  L  Y  N  I  N  T  S  A  R  C  R  K  Q  I  G  L  F  I  N  I  Y  D  E  T  C  T  K  A  I  *  G  N  P  V  I  *  W  Q  V  N  R  I  D  N  L  H  Q  N  R  W  L  A  H  F  R  *  S  Y  Q  G  H  S  I  L  Y  Q  *  K  V  W  T  E  F  C  I  K  E  W  S  Q  I  L  Q  E  G  E  E  C  S  R  G  P  *  S  Y  *  T  H  *  Y  P  K  V  T  L  K  A  C  R  G  A  G  *  *  C  T  *  A  I  Q  T  Y  M  V  P  Y   </first_frame>
            <second_frame>  A  N  L  V  H  A  Y  L  A  R  R  A  L  D  Y  L  I  G  F  N  I  S  P  L  L  W  R  K  L  P  G  C  Q  S  A  G  R  V  Q  S  A  A  L  S  L  I  C  D  R  E  M  E  I  D  G  F  K  P  Q  E  Y  W  T  V  L  V  E  F  K  K  N  K  N  L  D  L  A  N  N  F  L  S  S  H  L  T  H  F  D  T  K  K  L  S  Q  F  S  V  S  S  H  T  E  A  M  E  I  E  G  K  I  N  S  S  N  F  E  V  L  S  S  K  I  T  K  K  Q  R  N  P  S  P  P  Y  I  T  S  T  L  Q  Q  D  A  A  N  K  L  D  F  S  S  T  Y  T  M  K  L  A  Q  K  L  Y  E  G  I  Q  L  S  D  G  K  S  T  G  L  I  T  Y  I  R  T  D  G  L  H  I  S  D  E  A  T  K  D  I  Q  S  Y  I  S  E  R  Y  G  Q  N  F  A  S  K  N  G  R  K  Y  F  K  K  V  K  N  A  Q  E  A  H  E  A  I  R  P  T  D  I  R  R  L  P  S  K  L  V  G  V  L  D  D  D  A  L  K  L  Y  K  L  I  W  S  R  T  </second_frame>
            <third_frame>   Q  I  *  C  M  P  I  L  Q  G  V  L  L  I  T  *  L  G  S  T  F  L  H  F  C  G  G  N  Y  L  V  V  N  L  L  V  G  F  S  L  L  P  Y  H  L  Y  V  T  E  K  W  K  L  M  D  S  N  H  R  S  I  G  Q  S  W  L  N  L  R  R  T  K  T  *  I  *  P  I  T  F  C  R  P  I  *  P  I  L  I  P  R  N  *  V  S  S  L  L  A  L  I  P  K  Q  W  K  L  K  G  R  *  I  H  Q  T  L  K  F  L  A  L  R  *  P  K  S  R  E  T  P  L  L  L  I  *  H  Q  H  F  S  K  M  P  Q  T  N  W  T  F  H  Q  H  I  R  *  N  L  H  K  S  Y  M  R  E  S  S  Y  L  M  A  S  Q  Q  D  *  *  L  T  S  E  Q  M  A  C  T  F  Q  M  K  L  P  R  T  F  N  P  I  S  V  K  G  M  D  R  I  L  H  Q  R  M  V  A  N  T  S  R  R  *  R  M  L  K  R  P  M  K  L  L  D  P  L  I  S  E  G  Y  P  Q  S  L  S  G  C  W  M  M  M  H  L  S  Y  T  N  L  Y  G  P  V  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2732" stop="1956"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANLVHAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDGFKPQEYWTVLVEFKKNKNLDLANNFLSSHLTHFDTKKLSQFSVSSHTEAMEIEGKINSSNFEVLSSKITKKQRNPSPPYITSTLQQDAANKLDFSSTYTMKLAQKLYEGIQLSDGKSTGLITYIRTDGLHISDEATKDIQSYISERYGQNFASKNGRKYFKKVKNAQEAHEAIRPTDIRRLPSKLVGVLDDDALKLYKLIWSRT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9918" PGL_stop="8622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9918" e_stop="9838"/>
            <exon e_start="9744" e_stop="9544"/>
            <exon e_start="9207" e_stop="9165"/>
            <exon e_start="9060" e_stop="8622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.282" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9918" e_stop="9838" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.282" acc_prob="0.906">
            <gDNA_intron_boundary i_start="9837" i_stop="9745" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9744" e_stop="9544" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="9543" i_stop="9208" i_length="336"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9207" e_stop="9165" e_length="43"/>
          </exon>
          <intron i_serial="3" don_prob="0.854" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9164" i_stop="9061" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="9060" e_stop="8622" e_length="439"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9918" stop="9838"/>
              <exon start="9744" stop="9544"/>
              <exon start="9207" stop="9165"/>
              <exon start="9060" stop="8657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9918" stop="9838"/>
              <exon start="9744" stop="9544"/>
              <exon start="9207" stop="9165"/>
              <exon start="9060" stop="8932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9902" stop="9838"/>
              <exon start="9744" stop="9544"/>
              <exon start="9207" stop="9165"/>
              <exon start="9060" stop="8622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371819" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGGAGATGCCAAAATTCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACA : CAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAG : ATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAA : GTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGCCATAGAAGACGGGCGTCAAGATTATGGTTCCATTTCAGCTATGCAGAAAGCTTTATCTATCACAATAGCTTTTGCAACATTTTGAGGGCTTTTGTTGGGGGTGGGTGTAGGAAGTAGCTAGTAATGGTGTATAGGTGGAAAATGACTTATACCATTAGTTTTGGAAAGATATGAAGTGAAGAAAAATGAGAAGTTCTCTATAGAAATCATGATGAAAATGAAGGATAGCTTTGGTGGATATGTTTGATAACAAGTAGAAGGGCTCTTTTGCATGAATGAAATATATGAATTCTCTTTAACCAATTCCACT</gDNA_template>
            <first_frame> P  E  M  P  K  F  I  *  T  P  F  Y  R  S  L  T  Y  L  A  S  L  E  N  I  T  T  T  :  Q  V  S  Y  Q  M  M  E  T  D  S  S  M  E  Q  *  *  Q  P  Q  E  R  C  P  L  G  Q  M  E  I  S  L  Q  F  Q  V  *  R  G  K  Q  *  R  S  C  K  K  N  A  T  R  C  L  Q  N  F  P  Q  L  L  T  K  T  R  K  S  *  :  I  R  C  L  N  A  G  E  H  S  K  Q  Q  *   : S  I  D  Y  I  G  N  Y  *  *  R  R  L  Y  R  P  W  T  F  T  K  T  G  F  C  S  K  H  E  *  Q  Q  E  L  K  Q  S  L  P  E  I  M  *  P  *  K  T  G  V  K  I  M  V  P  F  Q  L  C  R  K  L  Y  L  S  Q  *  L  L  Q  H  F  E  G  F  C  W  G  W  V  *  E  V  A  S  N  G  V  *  V  E  N  D  L  Y  H  *  F  W  K  D  M  K  *  R  K  M  R  S  S  L  *  K  S  *  *  K  *  R  I  A  L  V  D  M  F  D  N  K  *  K  G  S  F  A  *  M  K  Y  M  N  S  L  *  P  I  P   </first_frame>
            <second_frame>  R  R  C  Q  N  S  S  R  H  L  F  I  G  L  *  H  I  W  P  P  W  R  I  L  P  Q  H :   R  *  A  I  K  *  W  R  Q  I  R  R  W  S  N  N  S  S  R  K  N  V  A  H  L  V  R  W  R  S  P  S  N  S  K  S  R  E  E  S  S  E  G  A  A  R  R  M  P  P  D  A  C  R  I  S  H  N  F  *  R  R  P  E  N  P  R :   F  D  A  *  M  Q  E  N  I  R  S  S  N  K  :  V  *  I  T  S  E  I  T  D  R  E  G  Y  T  G  L  G  H  L  P  R  Q  D  S  V  L  N  M  N  N  S  R  S  *  S  N  L  Y  Q  K  S  C  S  H  R  R  R  A  S  R  L  W  F  H  F  S  Y  A  E  S  F  I  Y  H  N  S  F  C  N  I  L  R  A  F  V  G  G  G  C  R  K  *  L  V  M  V  Y  R  W  K  M  T  Y  T  I  S  F  G  K  I  *  S  E  E  K  *  E  V  L  Y  R  N  H  D  E  N  E  G  *  L  W  W  I  C  L  I  T  S  R  R  A  L  L  H  E  *  N  I  *  I  L  F  N  Q  F  H  </second_frame>
            <third_frame>   G  D  A  K  I  H  L  D  T  F  L  S  V  F  N  I  S  G  L  P  G  E  Y  Y  H  N   : T  G  K  L  S  N  D  G  D  R  F  V  D  G  A  I  I  A  A  A  R  T  L  P  T  W  S  D  G  D  L  P  P  I  P  S  L  E  R  K  A  V  K  E  L  Q  E  E  C  H  Q  M  L  A  E  F  P  T  T  S  D  E  D  Q  K  I  L   : D  S  M  P  E  C  R  R  T  F  E  A  A  I  K :   Y  R  L  H  R  K  L  L  I  E  K  V  I  Q  A  L  D  I  Y  Q  D  R  I  L  F  *  T  *  I  T  A  G  V  E  A  I  F  T  R  N  H  V  A  I  E  D  G  R  Q  D  Y  G  S  I  S  A  M  Q  K  A  L  S  I  T  I  A  F  A  T  F  *  G  L  L  L  G  V  G  V  G  S  S  *  *  W  C  I  G  G  K  *  L  I  P  L  V  L  E  R  Y  E  V  K  K  N  E  K  F  S  I  E  I  M  M  K  M  K  D  S  F  G  G  Y  V  *  *  Q  V  E  G  L  F  C  M  N  E  I  Y  E  F  S  L  T  N  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9916" stop="9838"/>
                    <exon start="9744" stop="9544"/>
                    <exon start="9207" stop="9165"/>
                    <exon start="9060" stop="8982"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDAKIHLDTFLSVFNISGLPGEYYHNTGKLSNDGDRFVDGAIIAAARTLPTWSDGDLPPIPSLERKAVKELQEECHQMLAEFPTTSDEDQKILDSMPECRRTFEAAIKYRLHRKLLIEKVIQALDIYQDRILF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="14413" PGL_stop="13777"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14413" e_stop="14390"/>
            <exon e_start="14145" e_stop="13777"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.940" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14413" e_stop="14390" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.940">
            <gDNA_intron_boundary i_start="14389" i_stop="14146" i_length="244"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="14145" e_stop="13777" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14413" stop="14390"/>
              <exon start="14145" stop="13777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14115" stop="13777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224862" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTATCAATTCAACCAATCCCGAG : ACAGATTCGGACTTGAGGTTGGCGTGCCTTCTTTTATATGCTTTTGATTGCAAGGACAACTTTTGGCAGCTATACGGAGACTTCTTGCCTAGTGCTGATGAATGCACTAGCTTTCTTCTAGCTACCGAGGTCTGGATATGAGTATCATCCAAATTTCAGTGCATTCAATTAATGTAATATTTTGTGGAAGATTCTATAGAAAATGCTATGCATTCACAAAATTATTCTGCACTTTGTTATGGTGTTCTGCTGAGGTTCAAGTTTGAGTAACTCGAAATGTGAATTAGAAAAGCTTTTGTGATATTCACACTGTTATGTGACCTTTGCTATTAGTGGGTTCTAATTTATAACAAAAGTTTCTTCGACTGA</gDNA_template>
            <first_frame> I  I  N  S  T  N  P  E  :  T  D  S  D  L  R  L  A  C  L  L  L  Y  A  F  D  C  K  D  N  F  W  Q  L  Y  G  D  F  L  P  S  A  D  E  C  T  S  F  L  L  A  T  E  V  W  I  *  V  S  S  K  F  Q  C  I  Q  L  M  *  Y  F  V  E  D  S  I  E  N  A  M  H  S  Q  N  Y  S  A  L  C  Y  G  V  L  L  R  F  K  F  E  *  L  E  M  *  I  R  K  A  F  V  I  F  T  L  L  C  D  L  C  Y  *  W  V  L  I  Y  N  K  S  F  F  D  * </first_frame>
            <second_frame>  L  S  I  Q  P  I  P  R :   Q  I  R  T  *  G  W  R  A  F  F  Y  M  L  L  I  A  R  T  T  F  G  S  Y  T  E  T  S  C  L  V  L  M  N  A  L  A  F  F  *  L  P  R  S  G  Y  E  Y  H  P  N  F  S  A  F  N  *  C  N  I  L  W  K  I  L  *  K  M  L  C  I  H  K  I  I  L  H  F  V  M  V  F  C  *  G  S  S  L  S  N  S  K  C  E  L  E  K  L  L  *  Y  S  H  C  Y  V  T  F  A  I  S  G  F  *  F  I  T  K  V  S  S  T   </second_frame>
            <third_frame>   Y  Q  F  N  Q  S  R   : D  R  F  G  L  E  V  G  V  P  S  F  I  C  F  *  L  Q  G  Q  L  L  A  A  I  R  R  L  L  A  *  C  *  *  M  H  *  L  S  S  S  Y  R  G  L  D  M  S  I  I  Q  I  S  V  H  S  I  N  V  I  F  C  G  R  F  Y  R  K  C  Y  A  F  T  K  L  F  C  T  L  L  W  C  S  A  E  V  Q  V  *  V  T  R  N  V  N  *  K  S  F  C  D  I  H  T  V  M  *  P  L  L  L  V  G  S  N  L  *  Q  K  F  L  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0020N15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="16520" PGL_stop="15027"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16520" e_stop="16337"/>
            <exon e_start="16241" e_stop="16023"/>
            <exon e_start="15129" e_stop="15027"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.932" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.905" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16520" e_stop="16337" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.932" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16336" i_stop="16242" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16241" e_stop="16023" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.905">
            <gDNA_intron_boundary i_start="16022" i_stop="15130" i_length="893"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="15129" e_stop="15027" e_length="103"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16520" stop="16337"/>
              <exon start="16241" stop="16023"/>
              <exon start="15129" stop="15027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16510" stop="16337"/>
              <exon start="16241" stop="16023"/>
              <exon start="15129" stop="15027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366996" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCTGGGCACTCTCTCACTGACAGTAGAGTGGATAACGTTTCAAGAACCCAAATTCCATCGATGTATGAATCTTCTTTACTGAAATTCCACTAAATTTTTAGCTCACTCTCAAGAATGGTTTCTTCCACCATTCTAATTCAGCAACCGACGAACTTCTTCCACCAGCCAGAGCTTCACCATCAG : CTATGGAGAGGTCTGCAGCATGGATGTGTTGCATCATTGCAGAAACAACCTATTTTGGTATGTAATAGTAACAAGAGAAACAGACCTTTGAGAGTTTCTTCAAGTGCTAATGGTGCTGTTACTTCTTCCACTTTGGAGGCCTATGATTCTTCTCCGTCTCCTTCTGCATTTCCTCTTTTTACACCCCCTTCTCAACCCCAAGATACTCCCGCTTCTCAG : TTGGAACTGGCAGATCCTGATTTCTACAAAATAGGATATGTTAGAAGTTTTCGAGCCTACGGGATTGAATTCAGGGAGGGACCAGATGGGTATGGAGTGTTTG</gDNA_template>
            <first_frame> P  W  A  L  S  H  *  Q  *  S  G  *  R  F  K  N  P  N  S  I  D  V  *  I  F  F  T  E  I  P  L  N  F  *  L  T  L  K  N  G  F  F  H  H  S  N  S  A  T  D  E  L  L  P  P  A  R  A  S  P  S   : A  M  E  R  S  A  A  W  M  C  C  I  I  A  E  T  T  Y  F  G  M  *  *  *  Q  E  K  Q  T  F  E  S  F  F  K  C  *  W  C  C  Y  F  F  H  F  G  G  L  *  F  F  S  V  S  F  C  I  S  S  F  Y  T  P  F  S  T  P  R  Y  S  R  F  S   : V  G  T  G  R  S  *  F  L  Q  N  R  I  C  *  K  F  S  S  L  R  D  *  I  Q  G  G  T  R  W  V  W  S  V   </first_frame>
            <second_frame>  P  G  H  S  L  T  D  S  R  V  D  N  V  S  R  T  Q  I  P  S  M  Y  E  S  S  L  L  K  F  H  *  I  F  S  S  L  S  R  M  V  S  S  T  I  L  I  Q  Q  P  T  N  F  F  H  Q  P  E  L  H  H  Q  :  L  W  R  G  L  Q  H  G  C  V  A  S  L  Q  K  Q  P  I  L  V  C  N  S  N  K  R  N  R  P  L  R  V  S  S  S  A  N  G  A  V  T  S  S  T  L  E  A  Y  D  S  S  P  S  P  S  A  F  P  L  F  T  P  P  S  Q  P  Q  D  T  P  A  S  Q  :  L  E  L  A  D  P  D  F  Y  K  I  G  Y  V  R  S  F  R  A  Y  G  I  E  F  R  E  G  P  D  G  Y  G  V  F  </second_frame>
            <third_frame>   L  G  T  L  S  L  T  V  E  W  I  T  F  Q  E  P  K  F  H  R  C  M  N  L  L  Y  *  N  S  T  K  F  L  A  H  S  Q  E  W  F  L  P  P  F  *  F  S  N  R  R  T  S  S  T  S  Q  S  F  T  I  S :   Y  G  E  V  C  S  M  D  V  L  H  H  C  R  N  N  L  F  W  Y  V  I  V  T  R  E  T  D  L  *  E  F  L  Q  V  L  M  V  L  L  L  L  P  L  W  R  P  M  I  L  L  R  L  L  L  H  F  L  F  L  H  P  L  L  N  P  K  I  L  P  L  L  S :   W  N  W  Q  I  L  I  S  T  K  *  D  M  L  E  V  F  E  P  T  G  L  N  S  G  R  D  Q  M  G  M  E  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16426" stop="16337"/>
                    <exon start="16241" stop="16023"/>
                    <exon start="15129" stop="15028"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFSSLSRMVSSTILIQQPTNFFHQPELHHQLWRGLQHGCVASLQKQPILVCNSNKRNRPLRVSSSANGAVTSSTLEAYDSSPSPSAFPLFTPPSQPQDTPASQLELADPDFYKIGYVRSFRAYGIEFREGPDGYGVF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="24069" PGL_stop="24221"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24069" e_stop="24221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="24069" e_stop="24221" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24069" stop="24221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAAGTTAGAGAAAATTGTATTTCACTACAATTGTATAATTTGTAATT</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  Y  V  V  *  S  *  R  K  L  Y  F  T  T  I  V  *  F  V  I </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  L  A  L  Y  K  N  R  N  T  I  Y  T  L  M  L  Y  K  V  R  E  N  C  I  S  L  Q  L  Y  N  L  *   </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  S  L  Y  T  K  T  E  T  Q  Y  I  H  L  C  C  I  K  L  E  K  I  V  F  H  Y  N  C  I  I  C  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0020N15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="27004" PGL_stop="27168"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27004" e_stop="27168"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27004" e_stop="27168" e_length="165"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27004" stop="27168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246839" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAAAGTAGAGTGAGGAAAGATTGGTCTGATTCAGAAAGTAGTGAAGACGATGGTAGTGATAATGAAAGTGACAAGAGCAGTGAAGATGCAAATGCTGGTAATATCCTTGAACCTGATGATACAGAGGAATTTTTGAGTGATGGTCTCACCAGATCTAACAATG</gDNA_template>
            <first_frame> S  K  V  E  *  G  K  I  G  L  I  Q  K  V  V  K  T  M  V  V  I  M  K  V  T  R  A  V  K  M  Q  M  L  V  I  S  L  N  L  M  I  Q  R  N  F  *  V  M  V  S  P  D  L  T  M </first_frame>
            <second_frame>  Q  K  *  S  E  E  R  L  V  *  F  R  K  *  *  R  R  W  *  *  *  *  K  *  Q  E  Q  *  R  C  K  C  W  *  Y  P  *  T  *  *  Y  R  G  I  F  E  *  W  S  H  Q  I  *  Q   </second_frame>
            <third_frame>   K  S  R  V  R  K  D  W  S  D  S  E  S  S  E  D  D  G  S  D  N  E  S  D  K  S  S  E  D  A  N  A  G  N  I  L  E  P  D  D  T  E  E  F  L  S  D  G  L  T  R  S  N  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0020N15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="34145" PGL_stop="35471"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34145" e_stop="34265"/>
            <exon e_start="34634" e_stop="35471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34145" e_stop="34265" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="34266" i_stop="34633" i_length="368"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="34634" e_stop="35471" e_length="838"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34145" stop="34265"/>
              <exon start="34634" stop="35215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34145" stop="34265"/>
              <exon start="34634" stop="34988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34149" stop="34265"/>
              <exon start="34634" stop="35461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34157" stop="34265"/>
              <exon start="34634" stop="34878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34658" stop="35120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34993" stop="35471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351057" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTGTTTCTCTTTCTCTCAAGAACCTCTTTTTTCTACTGCTGTTTTGGGGCGATTCATTTGTTCATCATTTGTCTAAATTGGGTTGCATTTCCGGTCCTTCTGCCTCTTCTTTCAACTGG : AGGCAATGTCGCAAGGTTACGCAATTGAGCTCTACTTTGATCCTGCACTTGAAAACCAGGTCTTGAAAGCCTGGAATGTATTGGCTCGGCGCCAGATTAGCACTCAGCTTATTGAAATTGAGTCTAGACCTCACATTACCCTCTTCTCGAGTCCGTTTCTTGATCCATCGAAGATTGAGAACATTGTAAAGAATTTTTCGTCCAAGCAAGAATCATTGCCTCTGTCCTTTGGTTCAATTGGAAGCCTCCCAAGTGACGACAATGTTCTATTTCTTGCCCCAACTCCAACTTTGTCTCTCCTTCAGTTCCACTCACAACTGTATGATGCTATGAAAAAGGAGGGCATTGAGATTGCGGAGGAGCATCGTCCTGATACATGGATTCCTTATTGCCCAGTAGCTGACGAAGTGCCTAAAACTCGTATGGGTGAGGCATTCACTGTTTTGAGGGATCTGAAATTACCTGTTGCTGGATATGCTACGGAAATTGCACTTGTTGAGTATCCACCAGTTCGTGAAGCATTTTCTTTTGTGCTTGGTAATACAGTTGAACCATGAGGCTTCAGGCATGTAATTGTGTTGATTTTAGTTTAGGTTTTTACCTTCTGTTTCCTACATAGTTGCTGTTTTAGAACCTGATATAGATGGTTAAGAGTGCTATTGTCGTTGCTAAATCGTCATCTGCTTTGATGAAATATTGAGGTCATTTCTGATTCTTTTCTTATCGTCCGTACTTGCAATTGAGGTTTTGATCTCATATGTCAGTGTTGTTGATAATAACATGCTTATTTTCTTCTTATCAATGGAAAATCTCTGTTGGACCGCTATTACCATAGAGA</gDNA_template>
            <first_frame> N  C  F  S  F  S  Q  E  P  L  F  S  T  A  V  L  G  R  F  I  C  S  S  F  V  *  I  G  L  H  F  R  S  F  C  L  F  F  Q  L   : E  A  M  S  Q  G  Y  A  I  E  L  Y  F  D  P  A  L  E  N  Q  V  L  K  A  W  N  V  L  A  R  R  Q  I  S  T  Q  L  I  E  I  E  S  R  P  H  I  T  L  F  S  S  P  F  L  D  P  S  K  I  E  N  I  V  K  N  F  S  S  K  Q  E  S  L  P  L  S  F  G  S  I  G  S  L  P  S  D  D  N  V  L  F  L  A  P  T  P  T  L  S  L  L  Q  F  H  S  Q  L  Y  D  A  M  K  K  E  G  I  E  I  A  E  E  H  R  P  D  T  W  I  P  Y  C  P  V  A  D  E  V  P  K  T  R  M  G  E  A  F  T  V  L  R  D  L  K  L  P  V  A  G  Y  A  T  E  I  A  L  V  E  Y  P  P  V  R  E  A  F  S  F  V  L  G  N  T  V  E  P  *  G  F  R  H  V  I  V  L  I  L  V  *  V  F  T  F  C  F  L  H  S  C  C  F  R  T  *  Y  R  W  L  R  V  L  L  S  L  L  N  R  H  L  L  *  *  N  I  E  V  I  S  D  S  F  L  I  V  R  T  C  N  *  G  F  D  L  I  C  Q  C  C  *  *  *  H  A  Y  F  L  L  I  N  G  K  S  L  L  D  R  Y  Y  H  R   </first_frame>
            <second_frame>  I  V  S  L  S  L  K  N  L  F  F  L  L  L  F  W  G  D  S  F  V  H  H  L  S  K  L  G  C  I  S  G  P  S  A  S  S  F  N  W  :  R  Q  C  R  K  V  T  Q  L  S  S  T  L  I  L  H  L  K  T  R  S  *  K  P  G  M  Y  W  L  G  A  R  L  A  L  S  L  L  K  L  S  L  D  L  T  L  P  S  S  R  V  R  F  L  I  H  R  R  L  R  T  L  *  R  I  F  R  P  S  K  N  H  C  L  C  P  L  V  Q  L  E  A  S  Q  V  T  T  M  F  Y  F  L  P  Q  L  Q  L  C  L  S  F  S  S  T  H  N  C  M  M  L  *  K  R  R  A  L  R  L  R  R  S  I  V  L  I  H  G  F  L  I  A  Q  *  L  T  K  C  L  K  L  V  W  V  R  H  S  L  F  *  G  I  *  N  Y  L  L  L  D  M  L  R  K  L  H  L  L  S  I  H  Q  F  V  K  H  F  L  L  C  L  V  I  Q  L  N  H  E  A  S  G  M  *  L  C  *  F  *  F  R  F  L  P  S  V  S  Y  I  V  A  V  L  E  P  D  I  D  G  *  E  C  Y  C  R  C  *  I  V  I  C  F  D  E  I  L  R  S  F  L  I  L  F  L  S  S  V  L  A  I  E  V  L  I  S  Y  V  S  V  V  D  N  N  M  L  I  F  F  L  S  M  E  N  L  C  W  T  A  I  T  I  E  </second_frame>
            <third_frame>   L  F  L  F  L  S  R  T  S  F  F  Y  C  C  F  G  A  I  H  L  F  I  I  C  L  N  W  V  A  F  P  V  L  L  P  L  L  S  T  G :   G  N  V  A  R  L  R  N  *  A  L  L  *  S  C  T  *  K  P  G  L  E  S  L  E  C  I  G  S  A  P  D  *  H  S  A  Y  *  N  *  V  *  T  S  H  Y  P  L  L  E  S  V  S  *  S  I  E  D  *  E  H  C  K  E  F  F  V  Q  A  R  I  I  A  S  V  L  W  F  N  W  K  P  P  K  *  R  Q  C  S  I  S  C  P  N  S  N  F  V  S  P  S  V  P  L  T  T  V  *  C  Y  E  K  G  G  H  *  D  C  G  G  A  S  S  *  Y  M  D  S  L  L  P  S  S  *  R  S  A  *  N  S  Y  G  *  G  I  H  C  F  E  G  S  E  I  T  C  C  W  I  C  Y  G  N  C  T  C  *  V  S  T  S  S  *  S  I  F  F  C  A  W  *  Y  S  *  T  M  R  L  Q  A  C  N  C  V  D  F  S  L  G  F  Y  L  L  F  P  T  *  L  L  F  *  N  L  I  *  M  V  K  S  A  I  V  V  A  K  S  S  S  A  L  M  K  Y  *  G  H  F  *  F  F  S  Y  R  P  Y  L  Q  L  R  F  *  S  H  M  S  V  L  L  I  I  T  C  L  F  S  S  Y  Q  W  K  I  S  V  G  P  L  L  P  *  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34223" stop="34265"/>
                    <exon start="34634" stop="35190"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGLHFRSFCLFFQLEAMSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLDPSKIENIVKNFSSKQESLPLSFGSIGSLPSDDNVLFLAPTPTLSLLQFHSQLYDAMKKEGIEIAEEHRPDTWIPYCPVADEVPKTRMGEAFTVLRDLKLPVAGYATEIALVEYPPVREAFSFVLGNTVEP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="35890" PGL_stop="34685"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35890" e_stop="35879"/>
            <exon e_start="35480" e_stop="34685"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.000" e_score="0.417"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.417">
            <gDNA_exon_boundary e_start="35890" e_stop="35879" e_length="12"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35878" i_stop="35481" i_length="398"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="35480" e_stop="34685" e_length="796"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35890" stop="35879"/>
              <exon start="35480" stop="34685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368630" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGCCAGCTT : CATATAATGTCTCTATGGTAATAGCGGTCCAACAGAGATTTTCCATTGATAAGAAGAAAATAAGCATGTTATTATCAACAACACTGACATATGAGATCAAAACCTCAATTGCAAGTACGGACGATAAGAAAAGAATCAGAAATGACCTCAATATTTCATCAAAGCAGATGACGATTTAGCAACGACAATAGCACTCTTAACCATCTATATCAGGTTCTAAAACAGCAACTATGTAGGAAACAGAAGGTAAAAACCTAAACTAAAATCAACACAATTACATGCCTGAAGCCTCATGGTTCAACTGTATTACCAAGCACAAAAGAAAATGCTTCACGAACTGGTGGATACTCAACAAGTGCAATTTCCGTAGCATATCCAGCAACAGGTAATTTCAGATCCCTCAAAACAGTGAATGCCTCACCCATACGAGTTTTAGGCACTTCGTCAGCTACTGGGCAATAAGGAATCCATGTATCAGGACGATGCTCCTCCGCAATCTCAATGCCCTCCTTTTTCATAGCATCATACAGTTGTGAGTGGAACTGAAGGAGAGACAAAGTTGGAGTTGGGGCAAGAAATAGAACATTGTCGTCACTTGGGAGGCTTCCAATTGAACCAAAGGACAGAGGCAATGATTCTTGCTTGGACGAAAAATTCTTTACAATGTTCTCAATCTTCGATGGATCAAGAAACGGACTCGAGAAGAGGGTAATGTGAGGTCTAGACTCAATTTCAATAAGCTGAGTGCTAATCTGGCGCCGAGCCAATACATTCCAGGCTTTCAAGACCTGGTTTT</gDNA_template>
            <first_frame> I  C  Q  L  :  H  I  M  S  L  W  *  *  R  S  N  R  D  F  P  L  I  R  R  K  *  A  C  Y  Y  Q  Q  H  *  H  M  R  S  K  P  Q  L  Q  V  R  T  I  R  K  E  S  E  M  T  S  I  F  H  Q  S  R  *  R  F  S  N  D  N  S  T  L  N  H  L  Y  Q  V  L  K  Q  Q  L  C  R  K  Q  K  V  K  T  *  T  K  I  N  T  I  T  C  L  K  P  H  G  S  T  V  L  P  S  T  K  E  N  A  S  R  T  G  G  Y  S  T  S  A  I  S  V  A  Y  P  A  T  G  N  F  R  S  L  K  T  V  N  A  S  P  I  R  V  L  G  T  S  S  A  T  G  Q  *  G  I  H  V  S  G  R  C  S  S  A  I  S  M  P  S  F  F  I  A  S  Y  S  C  E  W  N  *  R  R  D  K  V  G  V  G  A  R  N  R  T  L  S  S  L  G  R  L  P  I  E  P  K  D  R  G  N  D  S  C  L  D  E  K  F  F  T  M  F  S  I  F  D  G  S  R  N  G  L  E  K  R  V  M  *  G  L  D  S  I  S  I  S  *  V  L  I  W  R  R  A  N  T  F  Q  A  F  K  T  W  F  </first_frame>
            <second_frame>  F  A  S  F :   I  *  C  L  Y  G  N  S  G  P  T  E  I  F  H  *  *  E  E  N  K  H  V  I  I  N  N  T  D  I  *  D  Q  N  L  N  C  K  Y  G  R  *  E  K  N  Q  K  *  P  Q  Y  F  I  K  A  D  D  D  L  A  T  T  I  A  L  L  T  I  Y  I  R  F  *  N  S  N  Y  V  G  N  R  R  *  K  P  K  L  K  S  T  Q  L  H  A  *  S  L  M  V  Q  L  Y  Y  Q  A  Q  K  K  M  L  H  E  L  V  D  T  Q  Q  V  Q  F  P  *  H  I  Q  Q  Q  V  I  S  D  P  S  K  Q  *  M  P  H  P  Y  E  F  *  A  L  R  Q  L  L  G  N  K  E  S  M  Y  Q  D  D  A  P  P  Q  S  Q  C  P  P  F  S  *  H  H  T  V  V  S  G  T  E  G  E  T  K  L  E  L  G  Q  E  I  E  H  C  R  H  L  G  G  F  Q  L  N  Q  R  T  E  A  M  I  L  A  W  T  K  N  S  L  Q  C  S  Q  S  S  M  D  Q  E  T  D  S  R  R  G  *  C  E  V  *  T  Q  F  Q  *  A  E  C  *  S  G  A  E  P  I  H  S  R  L  S  R  P  G  F </second_frame>
            <third_frame>   L  P  A   : S  Y  N  V  S  M  V  I  A  V  Q  Q  R  F  S  I  D  K  K  K  I  S  M  L  L  S  T  T  L  T  Y  E  I  K  T  S  I  A  S  T  D  D  K  K  R  I  R  N  D  L  N  I  S  S  K  Q  M  T  I  *  Q  R  Q  *  H  S  *  P  S  I  S  G  S  K  T  A  T  M  *  E  T  E  G  K  N  L  N  *  N  Q  H  N  Y  M  P  E  A  S  W  F  N  C  I  T  K  H  K  R  K  C  F  T  N  W  W  I  L  N  K  C  N  F  R  S  I  S  S  N  R  *  F  Q  I  P  Q  N  S  E  C  L  T  H  T  S  F  R  H  F  V  S  Y  W  A  I  R  N  P  C  I  R  T  M  L  L  R  N  L  N  A  L  L  F  H  S  I  I  Q  L  *  V  E  L  K  E  R  Q  S  W  S  W  G  K  K  *  N  I  V  V  T  W  E  A  S  N  *  T  K  G  Q  R  Q  *  F  L  L  G  R  K  I  L  Y  N  V  L  N  L  R  W  I  K  K  R  T  R  E  E  G  N  V  R  S  R  L  N  F  N  K  L  S  A  N  L  A  P  S  Q  Y  I  P  G  F  Q  D  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35222" stop="35019"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKINTITCLKPHGSTVLPSTKENASRTGGYSTSAISVAYPATGNFRSLKTVNASPIRVLGTSSATGQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="39130" PGL_stop="39712"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39130" e_stop="39712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="39130" e_stop="39712" e_length="583"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39130" stop="39712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302479" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGCATCACACCGATATTGCCCCTTCCGGCACCCCCGTTGGATGGGAATCTGGGACCAACACCTCTAGCTCAGGTGGTAGAGGAACCAAATGATGTTAAGATGGAAGAGAATGAAGAGGAAAACAATAAGGACAAGGTTCCAGCATCTGTTGCAACACATACGAGAACTATTGGTATCATTTATCCCCCTCCTGATATTAGGAGTATTGTTGACAAGACTTCACAGTTTGTGGCGAAGAATGGTCCGGAATTTGAGAAGAGGATTGTTCTAAATAACGCTGGCAATGCAAAATTCAACTTCCTGAATGCTTCTGATCCTTACCATGCCTATTATCAGCACCGTTTGGCTGAAGCTCGCGCACAGAATCAGGGTTCTGGAGAGCAGCCTACTCAGCCAGAAGACAAAGAAGCAACCCCTGCTCCTACCGCTGATGATGCTGAGGCAACTGCAAAACCTGACCCATCAGCTCAATTTAGACCTGTCAGAAAGGTTCTTGAGCCACCTGAGGCAGAGCAATATACTGTTCGACTCCCTGAAGGGATCACAGGTGAAGAAATGGATATCATAAAGCTGACATCAC</gDNA_template>
            <first_frame> L  G  I  T  P  I  L  P  L  P  A  P  P  L  D  G  N  L  G  P  T  P  L  A  Q  V  V  E  E  P  N  D  V  K  M  E  E  N  E  E  E  N  N  K  D  K  V  P  A  S  V  A  T  H  T  R  T  I  G  I  I  Y  P  P  P  D  I  R  S  I  V  D  K  T  S  Q  F  V  A  K  N  G  P  E  F  E  K  R  I  V  L  N  N  A  G  N  A  K  F  N  F  L  N  A  S  D  P  Y  H  A  Y  Y  Q  H  R  L  A  E  A  R  A  Q  N  Q  G  S  G  E  Q  P  T  Q  P  E  D  K  E  A  T  P  A  P  T  A  D  D  A  E  A  T  A  K  P  D  P  S  A  Q  F  R  P  V  R  K  V  L  E  P  P  E  A  E  Q  Y  T  V  R  L  P  E  G  I  T  G  E  E  M  D  I  I  K  L  T  S  </first_frame>
            <second_frame>  *  A  S  H  R  Y  C  P  F  R  H  P  R  W  M  G  I  W  D  Q  H  L  *  L  R  W  *  R  N  Q  M  M  L  R  W  K  R  M  K  R  K  T  I  R  T  R  F  Q  H  L  L  Q  H  I  R  E  L  L  V  S  F  I  P  L  L  I  L  G  V  L  L  T  R  L  H  S  L  W  R  R  M  V  R  N  L  R  R  G  L  F  *  I  T  L  A  M  Q  N  S  T  S  *  M  L  L  I  L  T  M  P  I  I  S  T  V  W  L  K  L  A  H  R  I  R  V  L  E  S  S  L  L  S  Q  K  T  K  K  Q  P  L  L  L  P  L  M  M  L  R  Q  L  Q  N  L  T  H  Q  L  N  L  D  L  S  E  R  F  L  S  H  L  R  Q  S  N  I  L  F  D  S  L  K  G  S  Q  V  K  K  W  I  S  *  S  *  H  H </second_frame>
            <third_frame>   R  H  H  T  D  I  A  P  S  G  T  P  V  G  W  E  S  G  T  N  T  S  S  S  G  G  R  G  T  K  *  C  *  D  G  R  E  *  R  G  K  Q  *  G  Q  G  S  S  I  C  C  N  T  Y  E  N  Y  W  Y  H  L  S  P  S  *  Y  *  E  Y  C  *  Q  D  F  T  V  C  G  E  E  W  S  G  I  *  E  E  D  C  S  K  *  R  W  Q  C  K  I  Q  L  P  E  C  F  *  S  L  P  C  L  L  S  A  P  F  G  *  S  S  R  T  E  S  G  F  W  R  A  A  Y  S  A  R  R  Q  R  S  N  P  C  S  Y  R  *  *  C  *  G  N  C  K  T  *  P  I  S  S  I  *  T  C  Q  K  G  S  *  A  T  *  G  R  A  I  Y  C  S  T  P  *  R  D  H  R  *  R  N  G  Y  H  K  A  D  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39130" stop="39711"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGITPILPLPAPPLDGNLGPTPLAQVVEEPNDVKMEENEEENNKDKVPASVATHTRTIGIIYPPPDIRSIVDKTSQFVAKNGPEFEKRIVLNNAGNAKFNFLNASDPYHAYYQHRLAEARAQNQGSGEQPTQPEDKEATPAPTADDAEATAKPDPSAQFRPVRKVLEPPEAEQYTVRLPEGITGEEMDIIKLTS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="40328" PGL_stop="40740"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40328" e_stop="40740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="40328" e_stop="40740" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40328" stop="40740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246550" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAAGAGAGAATCCTGGCAGAAAGGGACCCAACTAAGTATGTTGTCTCTCCTATAACTGGTGAGTTAATACCTATTAGTGAGATGTCTGAACATATGAGGATCTCTCTCATTGATCCGAAGTACAAGGAACAGAAGGACAGGATGTTTGCGAAGATTAAGGAAACGACTCTTGCTCAAGATGATGAGATCTCTAGGAACATTGTTGGGCTTGCACGAACTCGTCCAGATATATTTGGTACTACGGAAGAAGAAGTTTCAAATGCGGTCAAGGCTGAGATTGAGAAAAAAATAGAAGAGCCGAAGCAGGTCATATGGGATGGTCACACAGGTAGCATTGGCCGCACTGCAAGCCAGGCAATGTCTCAGAACAGTGGAGAGGATCAGAATGATGCTGCAAATGATGTAAGAAAC</gDNA_template>
            <first_frame> L  K  R  E  S  W  Q  K  G  T  Q  L  S  M  L  S  L  L  *  L  V  S  *  Y  L  L  V  R  C  L  N  I  *  G  S  L  S  L  I  R  S  T  R  N  R  R  T  G  C  L  R  R  L  R  K  R  L  L  L  K  M  M  R  S  L  G  T  L  L  G  L  H  E  L  V  Q  I  Y  L  V  L  R  K  K  K  F  Q  M  R  S  R  L  R  L  R  K  K  *  K  S  R  S  R  S  Y  G  M  V  T  Q  V  A  L  A  A  L  Q  A  R  Q  C  L  R  T  V  E  R  I  R  M  M  L  Q  M  M  *  E   </first_frame>
            <second_frame>  *  R  E  N  P  G  R  K  G  P  N  *  V  C  C  L  S  Y  N  W  *  V  N  T  Y  *  *  D  V  *  T  Y  E  D  L  S  H  *  S  E  V  Q  G  T  E  G  Q  D  V  C  E  D  *  G  N  D  S  C  S  R  *  *  D  L  *  E  H  C  W  A  C  T  N  S  S  R  Y  I  W  Y  Y  G  R  R  S  F  K  C  G  Q  G  *  D  *  E  K  N  R  R  A  E  A  G  H  M  G  W  S  H  R  *  H  W  P  H  C  K  P  G  N  V  S  E  Q  W  R  G  S  E  *  C  C  K  *  C  K  K  </second_frame>
            <third_frame>   E  E  R  I  L  A  E  R  D  P  T  K  Y  V  V  S  P  I  T  G  E  L  I  P  I  S  E  M  S  E  H  M  R  I  S  L  I  D  P  K  Y  K  E  Q  K  D  R  M  F  A  K  I  K  E  T  T  L  A  Q  D  D  E  I  S  R  N  I  V  G  L  A  R  T  R  P  D  I  F  G  T  T  E  E  E  V  S  N  A  V  K  A  E  I  E  K  K  I  E  E  P  K  Q  V  I  W  D  G  H  T  G  S  I  G  R  T  A  S  Q  A  M  S  Q  N  S  G  E  D  Q  N  D  A  A  N  D  V  R  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40330" stop="40740"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EERILAERDPTKYVVSPITGELIPISEMSEHMRISLIDPKYKEQKDRMFAKIKETTLAQDDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIEKKIEEPKQVIWDGHTGSIGRTASQAMSQNSGEDQNDAANDVRN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="40771" PGL_stop="42814"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41710" e_stop="42374"/>
            <exon e_start="42470" e_stop="42814"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.858" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="41710" e_stop="42374" e_length="665"/>
          </exon>
          <intron i_serial="1" don_prob="0.858" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42375" i_stop="42469" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="42470" e_stop="42814" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41710" stop="42374"/>
              <exon start="42470" stop="42484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41710" stop="42312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41710" stop="42176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41969" stop="42374"/>
              <exon start="42470" stop="42814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380035" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAAAGAACTCTCCTTTCTTCTTTCATGTTATTTTGGAGATTATACTGGTCTTGTACTTCTAGATTTTCTTTCTGCAATTTAATCAATTTTATCTTTCTGATGGTTGTGGGTATCTACTACAGATTTTGGCATGTTGGCGATCATCGATGATGACAACAGGAAGCTTACTAGTTCTATTCCTTTAAGATGCAATGACTGTAGGTTATGTTCTACTAATTTGTGTGTCTTAACATGTGCAGTTGCTCCACCCTCTAACTAGAGCCCAGTTGTTATTTTGTTGTATCTTTTGAGTCCAAGGCCATTTTGGGATTAGAACTTTTCTGATGTCAAACATTCCTTACAATTTTAGAGGCTTTCCTTGGCAATTAATATTTCAAACTCTTCTGTGGATTTAGGACCTATTTCTGTAGAAGATGTGTGTGTCGTGTTTGGCGATGCTTGTCCCAAGCACACCTGCCTCATATGTGGTGCGTTTTTGGGGCACTTGAGCCCCTTTGTGCAAGTCCTATGTAGCTTCATTCTTTTCATTTGCTTTTGTGTAGTCTGCTATCTGGAGAAAGTGGCTAAGGTTTCTCTGATGCCTTTATTTTATCAACACAGCTTTACCCCTGTTAGAGGCTGTGATGGTTGTATTATGAGGTTCTATCTTGGTAGCAAAAGCAG : TTTGTCCGTGCTTTTGGAGGAGGTTGCAGATTGATGATTGATAAATGATTCATATGTGATCTTTGGGAATGCCAGATAATGTGCCGCCAGTAGTTTTTATTTGTTAATGGGAGTTGGTTTGTTAGCTTATATATGCTTTGTGTGTTTGTCCTGTTTGTATCTTGATCCACCCCATTTTTATGGGGTCCAATTATCTTAACTGCACTTTCAACTGATGATGACAGAACTAGTGACATTTCACAGCTAGGAATGTGATCGACATACTTTTTAAGAAACTGCTTTCTATGGGATCATGTTCTGGCCATGTATTTCTATCTTTGCAGCTTTCCCTTAATAAGCAGAAGT</gDNA_template>
            <first_frame> F  K  E  L  S  F  L  L  S  C  Y  F  G  D  Y  T  G  L  V  L  L  D  F  L  S  A  I  *  S  I  L  S  F  *  W  L  W  V  S  T  T  D  F  G  M  L  A  I  I  D  D  D  N  R  K  L  T  S  S  I  P  L  R  C  N  D  C  R  L  C  S  T  N  L  C  V  L  T  C  A  V  A  P  P  S  N  *  S  P  V  V  I  L  L  Y  L  L  S  P  R  P  F  W  D  *  N  F  S  D  V  K  H  S  L  Q  F  *  R  L  S  L  A  I  N  I  S  N  S  S  V  D  L  G  P  I  S  V  E  D  V  C  V  V  F  G  D  A  C  P  K  H  T  C  L  I  C  G  A  F  L  G  H  L  S  P  F  V  Q  V  L  C  S  F  I  L  F  I  C  F  C  V  V  C  Y  L  E  K  V  A  K  V  S  L  M  P  L  F  Y  Q  H  S  F  T  P  V  R  G  C  D  G  C  I  M  R  F  Y  L  G  S  K  S  S :   L  S  V  L  L  E  E  V  A  D  *  *  L  I  N  D  S  Y  V  I  F  G  N  A  R  *  C  A  A  S  S  F  Y  L  L  M  G  V  G  L  L  A  Y  I  C  F  V  C  L  S  C  L  Y  L  D  P  P  H  F  Y  G  V  Q  L  S  *  L  H  F  Q  L  M  M  T  E  L  V  T  F  H  S  *  E  C  D  R  H  T  F  *  E  T  A  F  Y  G  I  M  F  W  P  C  I  S  I  F  A  A  F  P  *  *  A  E   </first_frame>
            <second_frame>  L  K  N  S  P  F  F  F  H  V  I  L  E  I  I  L  V  L  Y  F  *  I  F  F  L  Q  F  N  Q  F  Y  L  S  D  G  C  G  Y  L  L  Q  I  L  A  C  W  R  S  S  M  M  T  T  G  S  L  L  V  L  F  L  *  D  A  M  T  V  G  Y  V  L  L  I  C  V  S  *  H  V  Q  L  L  H  P  L  T  R  A  Q  L  L  F  C  C  I  F  *  V  Q  G  H  F  G  I  R  T  F  L  M  S  N  I  P  Y  N  F  R  G  F  P  W  Q  L  I  F  Q  T  L  L  W  I  *  D  L  F  L  *  K  M  C  V  S  C  L  A  M  L  V  P  S  T  P  A  S  Y  V  V  R  F  W  G  T  *  A  P  L  C  K  S  Y  V  A  S  F  F  S  F  A  F  V  *  S  A  I  W  R  K  W  L  R  F  L  *  C  L  Y  F  I  N  T  A  L  P  L  L  E  A  V  M  V  V  L  *  G  S  I  L  V  A  K  A   : V  C  P  C  F  W  R  R  L  Q  I  D  D  *  *  M  I  H  M  *  S  L  G  M  P  D  N  V  P  P  V  V  F  I  C  *  W  E  L  V  C  *  L  I  Y  A  L  C  V  C  P  V  C  I  L  I  H  P  I  F  M  G  S  N  Y  L  N  C  T  F  N  *  *  *  Q  N  *  *  H  F  T  A  R  N  V  I  D  I  L  F  K  K  L  L  S  M  G  S  C  S  G  H  V  F  L  S  L  Q  L  S  L  N  K  Q  K  </second_frame>
            <third_frame>   *  R  T  L  L  S  S  F  M  L  F  W  R  L  Y  W  S  C  T  S  R  F  S  F  C  N  L  I  N  F  I  F  L  M  V  V  G  I  Y  Y  R  F  W  H  V  G  D  H  R  *  *  Q  Q  E  A  Y  *  F  Y  S  F  K  M  Q  *  L  *  V  M  F  Y  *  F  V  C  L  N  M  C  S  C  S  T  L  *  L  E  P  S  C  Y  F  V  V  S  F  E  S  K  A  I  L  G  L  E  L  F  *  C  Q  T  F  L  T  I  L  E  A  F  L  G  N  *  Y  F  K  L  F  C  G  F  R  T  Y  F  C  R  R  C  V  C  R  V  W  R  C  L  S  Q  A  H  L  P  H  M  W  C  V  F  G  A  L  E  P  L  C  A  S  P  M  *  L  H  S  F  H  L  L  L  C  S  L  L  S  G  E  S  G  *  G  F  S  D  A  F  I  L  S  T  Q  L  Y  P  C  *  R  L  *  W  L  Y  Y  E  V  L  S  W  *  Q  K  Q  :  F  V  R  A  F  G  G  G  C  R  L  M  I  D  K  *  F  I  C  D  L  W  E  C  Q  I  M  C  R  Q  *  F  L  F  V  N  G  S  W  F  V  S  L  Y  M  L  C  V  F  V  L  F  V  S  *  S  T  P  F  L  W  G  P  I  I  L  T  A  L  S  T  D  D  D  R  T  S  D  I  S  Q  L  G  M  *  S  T  Y  F  L  R  N  C  F  L  W  D  H  V  L  A  M  Y  F  Y  L  C  S  F  P  L  I  S  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42061" stop="42374"/>
                    <exon start="42470" stop="42503"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLSLAINISNSSVDLGPISVEDVCVVFGDACPKHTCLICGAFLGHLSPFVQVLCSFILFICFCVVCYLEKVAKVSLMPLFYQHSFTPVRGCDGCIMRFYLGSKSSLSVLLEEVAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40771" e_stop="41271"/>
            <exon e_start="41368" e_stop="41667"/>
            <exon e_start="41834" e_stop="42374"/>
            <exon e_start="42470" e_stop="42814"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.926" acc_prob="1.000" e_score="0.992"/>
          <exon-intron don_prob="0.877" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.000" e_score="0.993"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="40771" e_stop="41271" e_length="501"/>
          </exon>
          <intron i_serial="1" don_prob="0.926" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41272" i_stop="41367" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41368" e_stop="41667" e_length="300"/>
          </exon>
          <intron i_serial="2" don_prob="0.877" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41668" i_stop="41833" i_length="166"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="41834" e_stop="42374" e_length="541"/>
          </exon>
          <intron i_serial="3" don_prob="0.858" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42375" i_stop="42469" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="42470" e_stop="42814" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40771" stop="41271"/>
              <exon start="41368" stop="41511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40976" stop="41271"/>
              <exon start="41368" stop="41597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41118" stop="41271"/>
              <exon start="41368" stop="41667"/>
              <exon start="41834" stop="42075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41969" stop="42374"/>
              <exon start="42470" stop="42814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380035" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACCCGGTCTTCCTTCTGTTAGGCCACTACCTCCACCTCCTGGGCTTGCGCTGAATATTCCTAGGCCTCCTAATACATTCCAGTATTCCACACCTACCATAGCTGGTGCTGCTCCGCCTCCACCTCAACCTCCTATGGTTAACATGATTCCTCAGGTTCGGCCCCCACCTCCTCCCATGCTACAACTACAAGGTCAGCAAAACCTCATGGTCAATCGTCCCCCAATGCCTCCATCAATGGCTATGAGTTCGCATACCCTTACTATTCCACCACCTCCTGGATCACAGTTTACACCTATGGGAGCACCTCGGCCCTTTGTTCCCCACCCGATGTCCCAGCCGGGAATGTCTATGGTCCCGCCTCCTCCTATGCCCCAAGGAATGCCACCACCTCCTCCACCAGAAGAAGCTCCTCCTCTCCCTGAAGAGCCAGAGCCGAAGAGGCAAAAGCTTGACGAGTCTGTTCTCATTCCTGAAGACCAGTTTTTGGCTCAGCATTCG : GGACCTGCAAGGATCAATGTATCTGTGCCGAATACTGATGAAGGGAATCTCAAAGGACAAGTTCTGGAAATCACTGTGCAATCTCTGACCGAAACCATTGCAAGTCTGAAAGAGAAGATTTCTGGGGAGATCCAGCTTCCTGCGAACAAACAAAAGCTGAGTGGAAAGGCTGGTTTTCTCAAGGACAACTTGTCTCTTGCATACTATAATGTTGCTTCTGGAGAAACACTCGGCCTCTCTCTGAGAGAACGTGGTGGGAGAAAGAGATGAATGAGGATTTATTTGACATGGCTTTCCAAG : ATTTTGGCATGTTGGCGATCATCGATGATGACAACAGGAAGCTTACTAGTTCTATTCCTTTAAGATGCAATGACTGTAGGTTATGTTCTACTAATTTGTGTGTCTTAACATGTGCAGTTGCTCCACCCTCTAACTAGAGCCCAGTTGTTATTTTGTTGTATCTTTTGAGTCCAAGGCCATTTTGGGATTAGAACTTTTCTGATGTCAAACATTCCTTACAATTTTAGAGGCTTTCCTTGGCAATTAATATTTCAAACTCTTCTGTGGATTTAGGACCTATTTCTGTAGAAGATGTGTGTGTCGTGTTTGGCGATGCTTGTCCCAAGCACACCTGCCTCATATGTGGTGCGTTTTTGGGGCACTTGAGCCCCTTTGTGCAAGTCCTATGTAGCTTCATTCTTTTCATTTGCTTTTGTGTAGTCTGCTATCTGGAGAAAGTGGCTAAGGTTTCTCTGATGCCTTTATTTTATCAACACAGCTTTACCCCTGTTAGAGGCTGTGATGGTTGTATTATGAGGTTCTATCTTGGTAGCAAAAGCAG : TTTGTCCGTGCTTTTGGAGGAGGTTGCAGATTGATGATTGATAAATGATTCATATGTGATCTTTGGGAATGCCAGATAATGTGCCGCCAGTAGTTTTTATTTGTTAATGGGAGTTGGTTTGTTAGCTTATATATGCTTTGTGTGTTTGTCCTGTTTGTATCTTGATCCACCCCATTTTTATGGGGTCCAATTATCTTAACTGCACTTTCAACTGATGATGACAGAACTAGTGACATTTCACAGCTAGGAATGTGATCGACATACTTTTTAAGAAACTGCTTTCTATGGGATCATGTTCTGGCCATGTATTTCTATCTTTGCAGCTTTCCCTTAATAAGCAGAAGT</gDNA_template>
            <first_frame> R  P  G  L  P  S  V  R  P  L  P  P  P  P  G  L  A  L  N  I  P  R  P  P  N  T  F  Q  Y  S  T  P  T  I  A  G  A  A  P  P  P  P  Q  P  P  M  V  N  M  I  P  Q  V  R  P  P  P  P  P  M  L  Q  L  Q  G  Q  Q  N  L  M  V  N  R  P  P  M  P  P  S  M  A  M  S  S  H  T  L  T  I  P  P  P  P  G  S  Q  F  T  P  M  G  A  P  R  P  F  V  P  H  P  M  S  Q  P  G  M  S  M  V  P  P  P  P  M  P  Q  G  M  P  P  P  P  P  P  E  E  A  P  P  L  P  E  E  P  E  P  K  R  Q  K  L  D  E  S  V  L  I  P  E  D  Q  F  L  A  Q  H  S  :  G  P  A  R  I  N  V  S  V  P  N  T  D  E  G  N  L  K  G  Q  V  L  E  I  T  V  Q  S  L  T  E  T  I  A  S  L  K  E  K  I  S  G  E  I  Q  L  P  A  N  K  Q  K  L  S  G  K  A  G  F  L  K  D  N  L  S  L  A  Y  Y  N  V  A  S  G  E  T  L  G  L  S  L  R  E  R  G  G  R  K  R  *  M  R  I  Y  L  T  W  L  S  K  :  I  L  A  C  W  R  S  S  M  M  T  T  G  S  L  L  V  L  F  L  *  D  A  M  T  V  G  Y  V  L  L  I  C  V  S  *  H  V  Q  L  L  H  P  L  T  R  A  Q  L  L  F  C  C  I  F  *  V  Q  G  H  F  G  I  R  T  F  L  M  S  N  I  P  Y  N  F  R  G  F  P  W  Q  L  I  F  Q  T  L  L  W  I  *  D  L  F  L  *  K  M  C  V  S  C  L  A  M  L  V  P  S  T  P  A  S  Y  V  V  R  F  W  G  T  *  A  P  L  C  K  S  Y  V  A  S  F  F  S  F  A  F  V  *  S  A  I  W  R  K  W  L  R  F  L  *  C  L  Y  F  I  N  T  A  L  P  L  L  E  A  V  M  V  V  L  *  G  S  I  L  V  A  K  A   : V  C  P  C  F  W  R  R  L  Q  I  D  D  *  *  M  I  H  M  *  S  L  G  M  P  D  N  V  P  P  V  V  F  I  C  *  W  E  L  V  C  *  L  I  Y  A  L  C  V  C  P  V  C  I  L  I  H  P  I  F  M  G  S  N  Y  L  N  C  T  F  N  *  *  *  Q  N  *  *  H  F  T  A  R  N  V  I  D  I  L  F  K  K  L  L  S  M  G  S  C  S  G  H  V  F  L  S  L  Q  L  S  L  N  K  Q  K  </first_frame>
            <second_frame>  D  P  V  F  L  L  L  G  H  Y  L  H  L  L  G  L  R  *  I  F  L  G  L  L  I  H  S  S  I  P  H  L  P  *  L  V  L  L  R  L  H  L  N  L  L  W  L  T  *  F  L  R  F  G  P  H  L  L  P  C  Y  N  Y  K  V  S  K  T  S  W  S  I  V  P  Q  C  L  H  Q  W  L  *  V  R  I  P  L  L  F  H  H  L  L  D  H  S  L  H  L  W  E  H  L  G  P  L  F  P  T  R  C  P  S  R  E  C  L  W  S  R  L  L  L  C  P  K  E  C  H  H  L  L  H  Q  K  K  L  L  L  S  L  K  S  Q  S  R  R  G  K  S  L  T  S  L  F  S  F  L  K  T  S  F  W  L  S  I  R :   D  L  Q  G  S  M  Y  L  C  R  I  L  M  K  G  I  S  K  D  K  F  W  K  S  L  C  N  L  *  P  K  P  L  Q  V  *  K  R  R  F  L  G  R  S  S  F  L  R  T  N  K  S  *  V  E  R  L  V  F  S  R  T  T  C  L  L  H  T  I  M  L  L  L  E  K  H  S  A  S  L  *  E  N  V  V  G  E  R  D  E  *  G  F  I  *  H  G  F  P  R :   F  W  H  V  G  D  H  R  *  *  Q  Q  E  A  Y  *  F  Y  S  F  K  M  Q  *  L  *  V  M  F  Y  *  F  V  C  L  N  M  C  S  C  S  T  L  *  L  E  P  S  C  Y  F  V  V  S  F  E  S  K  A  I  L  G  L  E  L  F  *  C  Q  T  F  L  T  I  L  E  A  F  L  G  N  *  Y  F  K  L  F  C  G  F  R  T  Y  F  C  R  R  C  V  C  R  V  W  R  C  L  S  Q  A  H  L  P  H  M  W  C  V  F  G  A  L  E  P  L  C  A  S  P  M  *  L  H  S  F  H  L  L  L  C  S  L  L  S  G  E  S  G  *  G  F  S  D  A  F  I  L  S  T  Q  L  Y  P  C  *  R  L  *  W  L  Y  Y  E  V  L  S  W  *  Q  K  Q  :  F  V  R  A  F  G  G  G  C  R  L  M  I  D  K  *  F  I  C  D  L  W  E  C  Q  I  M  C  R  Q  *  F  L  F  V  N  G  S  W  F  V  S  L  Y  M  L  C  V  F  V  L  F  V  S  *  S  T  P  F  L  W  G  P  I  I  L  T  A  L  S  T  D  D  D  R  T  S  D  I  S  Q  L  G  M  *  S  T  Y  F  L  R  N  C  F  L  W  D  H  V  L  A  M  Y  F  Y  L  C  S  F  P  L  I  S  R  S </second_frame>
            <third_frame>   T  R  S  S  F  C  *  A  T  T  S  T  S  W  A  C  A  E  Y  S  *  A  S  *  Y  I  P  V  F  H  T  Y  H  S  W  C  C  S  A  S  T  S  T  S  Y  G  *  H  D  S  S  G  S  A  P  T  S  S  H  A  T  T  T  R  S  A  K  P  H  G  Q  S  S  P  N  A  S  I  N  G  Y  E  F  A  Y  P  Y  Y  S  T  T  S  W  I  T  V  Y  T  Y  G  S  T  S  A  L  C  S  P  P  D  V  P  A  G  N  V  Y  G  P  A  S  S  Y  A  P  R  N  A  T  T  S  S  T  R  R  S  S  S  S  P  *  R  A  R  A  E  E  A  K  A  *  R  V  C  S  H  S  *  R  P  V  F  G  S  A  F   : G  T  C  K  D  Q  C  I  C  A  E  Y  *  *  R  E  S  Q  R  T  S  S  G  N  H  C  A  I  S  D  R  N  H  C  K  S  E  R  E  D  F  W  G  D  P  A  S  C  E  Q  T  K  A  E  W  K  G  W  F  S  Q  G  Q  L  V  S  C  I  L  *  C  C  F  W  R  N  T  R  P  L  S  E  R  T  W  W  E  K  E  M  N  E  D  L  F  D  M  A  F  Q   : D  F  G  M  L  A  I  I  D  D  D  N  R  K  L  T  S  S  I  P  L  R  C  N  D  C  R  L  C  S  T  N  L  C  V  L  T  C  A  V  A  P  P  S  N  *  S  P  V  V  I  L  L  Y  L  L  S  P  R  P  F  W  D  *  N  F  S  D  V  K  H  S  L  Q  F  *  R  L  S  L  A  I  N  I  S  N  S  S  V  D  L  G  P  I  S  V  E  D  V  C  V  V  F  G  D  A  C  P  K  H  T  C  L  I  C  G  A  F  L  G  H  L  S  P  F  V  Q  V  L  C  S  F  I  L  F  I  C  F  C  V  V  C  Y  L  E  K  V  A  K  V  S  L  M  P  L  F  Y  Q  H  S  F  T  P  V  R  G  C  D  G  C  I  M  R  F  Y  L  G  S  K  S  S :   L  S  V  L  L  E  E  V  A  D  *  *  L  I  N  D  S  Y  V  I  F  G  N  A  R  *  C  A  A  S  S  F  Y  L  L  M  G  V  G  L  L  A  Y  I  C  F  V  C  L  S  C  L  Y  L  D  P  P  H  F  Y  G  V  Q  L  S  *  L  H  F  Q  L  M  M  T  E  L  V  T  F  H  S  *  E  C  D  R  H  T  F  *  E  T  A  F  Y  G  I  M  F  W  P  C  I  S  I  F  A  A  F  P  *  *  A  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40771" stop="41271"/>
                    <exon start="41368" stop="41637"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPGLPSVRPLPPPPGLALNIPRPPNTFQYSTPTIAGAAPPPPQPPMVNMIPQVRPPPPPMLQLQGQQNLMVNRPPMPPSMAMSSHTLTIPPPPGSQFTPMGAPRPFVPHPMSQPGMSMVPPPPMPQGMPPPPPPEEAPPLPEEPEPKRQKLDESVLIPEDQFLAQHSGPARINVSVPNTDEGNLKGQVLEITVQSLTETIASLKEKISGEIQLPANKQKLSGKAGFLKDNLSLAYYNVASGETLGLSLRERGGRKR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42061" stop="42374"/>
                    <exon start="42470" stop="42503"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLSLAINISNSSVDLGPISVEDVCVVFGDACPKHTCLICGAFLGHLSPFVQVLCSFILFICFCVVCYLEKVAKVSLMPLFYQHSFTPVRGCDGCIMRFYLGSKSSLSVLLEEVAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="41078" PGL_stop="40771"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41078" e_stop="40771"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="41078" e_stop="40771" e_length="308"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41078" stop="40771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281531" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGCTCCCATAGGTGTAAACTGTGATCCAGGAGGTGGTGGAATAGTAAGGGTATGCGAACTCATAGCCATTGATGGAGGCATTGGGGGACGATTGACCATGAGGTTTTGCTGACCTTGTAGTTGTAGCATGGGAGGAGGTGGGGGCCGAACCTGAGGAATCATGTTAACCATAGGAGGTTGAGGTGGAGGCGGAGCAGCACCAGCTATGGTAGGTGTGGAATACTGGAATGTATTAGGAGGCCTAGGAATATTCAGCGCAAGCCCAGGAGGTGGAGGTAGTGGCCTAACAGAAGGAAGACCGGGTCT</gDNA_template>
            <first_frame> G  A  P  I  G  V  N  C  D  P  G  G  G  G  I  V  R  V  C  E  L  I  A  I  D  G  G  I  G  G  R  L  T  M  R  F  C  *  P  C  S  C  S  M  G  G  G  G  G  R  T  *  G  I  M  L  T  I  G  G  *  G  G  G  G  A  A  P  A  M  V  G  V  E  Y  W  N  V  L  G  G  L  G  I  F  S  A  S  P  G  G  G  G  S  G  L  T  E  G  R  P  G   </first_frame>
            <second_frame>  V  L  P  *  V  *  T  V  I  Q  E  V  V  E  *  *  G  Y  A  N  S  *  P  L  M  E  A  L  G  D  D  *  P  *  G  F  A  D  L  V  V  V  A  W  E  E  V  G  A  E  P  E  E  S  C  *  P  *  E  V  E  V  E  A  E  Q  H  Q  L  W  *  V  W  N  T  G  M  Y  *  E  A  *  E  Y  S  A  Q  A  Q  E  V  E  V  V  A  *  Q  K  E  D  R  V  </second_frame>
            <third_frame>   C  S  H  R  C  K  L  *  S  R  R  W  W  N  S  K  G  M  R  T  H  S  H  *  W  R  H  W  G  T  I  D  H  E  V  L  L  T  L  *  L  *  H  G  R  R  W  G  P  N  L  R  N  H  V  N  H  R  R  L  R  W  R  R  S  S  T  S  Y  G  R  C  G  I  L  E  C  I  R  R  P  R  N  I  Q  R  K  P  R  R  W  R  *  W  P  N  R  R  K  T  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0020N15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="47495" PGL_stop="43360"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47495" e_stop="47011"/>
            <exon e_start="46467" e_stop="45775"/>
            <exon e_start="45680" e_stop="45592"/>
            <exon e_start="45449" e_stop="45380"/>
            <exon e_start="45229" e_stop="45146"/>
            <exon e_start="45045" e_stop="44969"/>
            <exon e_start="44851" e_stop="44770"/>
            <exon e_start="44632" e_stop="44550"/>
            <exon e_start="44463" e_stop="44400"/>
            <exon e_start="44300" e_stop="44172"/>
            <exon e_start="43964" e_stop="43861"/>
            <exon e_start="43773" e_stop="43360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="0.998"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.870" e_score="1.000"/>
          <exon-intron don_prob="0.515" acc_prob="0.898" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.670" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.898" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="47495" e_stop="47011" e_length="485"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="47010" i_stop="46468" i_length="543"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46467" e_stop="45775" e_length="693"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45774" i_stop="45681" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45680" e_stop="45592" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45591" i_stop="45450" i_length="142"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45449" e_stop="45380" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.916" acc_prob="0.870">
            <gDNA_intron_boundary i_start="45379" i_stop="45230" i_length="150"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45229" e_stop="45146" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.515" acc_prob="0.898">
            <gDNA_intron_boundary i_start="45145" i_stop="45046" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45045" e_stop="44969" e_length="77"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.952">
            <gDNA_intron_boundary i_start="44968" i_stop="44852" i_length="117"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="44851" e_stop="44770" e_length="82"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.979">
            <gDNA_intron_boundary i_start="44769" i_stop="44633" i_length="137"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="44632" e_stop="44550" e_length="83"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.670">
            <gDNA_intron_boundary i_start="44549" i_stop="44464" i_length="86"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="44463" e_stop="44400" e_length="64"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.890">
            <gDNA_intron_boundary i_start="44399" i_stop="44301" i_length="99"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="44300" e_stop="44172" e_length="129"/>
          </exon>
          <intron i_serial="10" don_prob="0.982" acc_prob="0.983">
            <gDNA_intron_boundary i_start="44171" i_stop="43965" i_length="207"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="43964" e_stop="43861" e_length="104"/>
          </exon>
          <intron i_serial="11" don_prob="0.975" acc_prob="0.898">
            <gDNA_intron_boundary i_start="43860" i_stop="43774" i_length="87"/>
          </intron>
          <exon e_serial="12" e_score="0.998">
            <gDNA_exon_boundary e_start="43773" e_stop="43360" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47495" stop="47011"/>
              <exon start="46467" stop="45775"/>
              <exon start="45680" stop="45592"/>
              <exon start="45449" stop="45380"/>
              <exon start="45229" stop="45146"/>
              <exon start="45045" stop="44969"/>
              <exon start="44851" stop="44770"/>
              <exon start="44632" stop="44550"/>
              <exon start="44463" stop="44400"/>
              <exon start="44300" stop="44172"/>
              <exon start="43964" stop="43861"/>
              <exon start="43773" stop="43360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45933" stop="45775"/>
              <exon start="45680" stop="45592"/>
              <exon start="45449" stop="45380"/>
              <exon start="45229" stop="45146"/>
              <exon start="45045" stop="44969"/>
              <exon start="44851" stop="44799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45800" stop="45775"/>
              <exon start="45680" stop="45592"/>
              <exon start="45449" stop="45380"/>
              <exon start="45229" stop="45146"/>
              <exon start="45045" stop="44969"/>
              <exon start="44851" stop="44770"/>
              <exon start="44632" stop="44550"/>
              <exon start="44463" stop="44400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45602" stop="45592"/>
              <exon start="45449" stop="45380"/>
              <exon start="45229" stop="45146"/>
              <exon start="45045" stop="44969"/>
              <exon start="44851" stop="44770"/>
              <exon start="44632" stop="44550"/>
              <exon start="44463" stop="44400"/>
              <exon start="44300" stop="44172"/>
              <exon start="43964" stop="43861"/>
              <exon start="43773" stop="43762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246740" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACACAAAAACTCCAAAAAGTCTCCTCTGTTCACAGAGTCTTCTCTTGACACTTTCTTGATTTTTGGCCCCTTATGTAATCCATCTGTTTCTTTCTCCTCTTTACACCTCTTACAAACTTTTTGAAACCCCAAACATTACAAATTGTACCAATACTAAATATGCTTGTACCTTTACACTCTCCTGCAAACATGGCTGCTCTGTTTTTTCGACTTCTGTTTTTTTCCTTGATAGTATCGAATGTTGTGCTAGTTCAGGCAAGGTTTATAGTTGAGAAGAACAGTATAAGTGTTCTGTCTCCTTATTCAATGCACTCGAAGCATGATGCCTCTATTGGTAATTTTGGTGTCCCTGATTATGGTGGTTCTTTAGTTGGAACTGTTGTTTATCCTAGTAAAGGTGCTAATGGCTGCGCTGAATTTGATGGTGATAAACCCTTCAAATCTAAGGGTCATCGTCCTAATATCCTTCTTCTTGATCGTGGAG : ACTGCTATTTTGCTTTGAAGGTATGGAATGGGCAACAAGCTGGAGCAGCTGCAGTACTAGTTGCTGATAGTATAGATGAGGCTCTTATAACTATGGATTCTCCTGAAGAAAGTACGGATGCCAATGGATACATCGAGAAGATTGGTATCCCGTCAGCATTGATTGAAAAGTCGTTTGGTGACGCATTGAAAGAAGCTCTTAAGAAGGGAGAGGAAGTTGTGATCAAAATGGATTGGACGGAGTCAATGCCTCATCCTGATCAGCGAGTTGAGTATGAATTGTGGACTAATAGCAACGATGAGTGTGGGGTTCGTTGTGATGAGCAGATGAATTTCATCAAGAACTTCAAAGGACATGCTCAAATACTTGAGAAGGGCGGTTATACTATGTTCACGCCTCATTATATTACTTGGTACTGTCCTGAAGCTTTCATTCTTAGCAGCCAGTGCAAATCTCAGTGCATTAATCACGGGAGATATTGCGCTCCTGATCCGGAGCAGGACTTTGGGGAGGGGTACCAAGGGAAGGATGTTGTCTTTGAGAACTTGAGGCAGCTTTGCGTGCATAGAGTTGCAAATGAGAGTAGCCGTTCTTGGGTTTGGTGGGACTATGTGACGGATTTTCATATTAGATGTTCAATGAAGCAAAAGCGATACAGCAAAGAATGTGCTGAGGAGGTCATGAAATCACTTG : ATCTACCGGTTGACAAGATAAAGAAATGCATGGGCGATCCAGAGGCTAATGTTGAAAATGATGTGTTGAAGACTGAGCAAGACCTCCAG : GTTGGCCGAGGACCTCGTGGAGATGTGACAATCTTACCAACAATGGTCATCAATGATATTCAATATCGAG : GGAAATTGGAGAGGACTGCTGTTTTAAAAGCCATATGTGCTGGTTTTAAGGAAACAACTGAACCTTCGATATGTTTAAGTGGAG : ATCTTGAAACAAACCAGTGCCTAGAAAGGAACGGTGGCTGTTGGCGGGATCCTAAATCTAACATAACTGCCTGCAAG : GATACATATAGAGGAAGAGTTTGTGAGTGCCCTTTGGTGAACGGCGTTCAGTATAAAGGAGATGGATACACATCTTGTGAAG : CCGTTGGACCTGGAAGGTGTTCGGTAAACAACGGAGGATGCTGGTCAGAAACCAGAAATGGGCAAACATATTCAGCATGTTCA : GAGGGTGAACTATCAGGCTGTAAGTGTCCGTATGGTTTTAAAGGGGATGGCCATAAATGTGAAG : ATGTAGATGAATGCAAGGAAGGACTTGTTTGTCAGTGTGATGGCTGCAGCTGTAAGGACACATGGGGTGGATTCGAGTGTAAGTGCAAAGGAAATCAACTCTACATAATGGAGCATGATACTTGTATAG : AAAGACACTCATCAAAGATCGGACGGGTCCTTATGTTCTCTTTCCTAGCCATTGCAGTGGGGGCTGGTTTAGCTGGTTACACCTTTTACAAGTATAGACTTCGG : TCATACATGGACTCAGAGATTATGGCCATCATGTCGCAGTACATGCCTCTCGACAACCACAATCAGAATCAGGTTGTCCATCATGAAGCTGAACCTCTACAACAGAGCTCGGTATGATGAGTATTTCTGGGAGCTAATGTATGATTTCCCATCCTTCTCTTGGATACTTTTCGACTTATGGATATTGAAGGAGATGAAGAACAGAGTCATATTTAGAGGAAAACCAGATACTTGATGCTGGTTTGCCAACTCTCTAGTCCATAAAGACCTGGCTTTTCCCATTTGTGTATAATAGAGTTTTGAGATGTAAATGCAGGGTTCACTTGTGTTAAAAGGACATATAGAACAAAATATACTTGCGAAGGCAACCCATGGCCTTTTACATTATTCAGCAATTGCATCCTTCTTAAATCA</gDNA_template>
            <first_frame> H  T  K  T  P  K  S  L  L  C  S  Q  S  L  L  L  T  L  S  *  F  L  A  P  Y  V  I  H  L  F  L  S  P  L  Y  T  S  Y  K  L  F  E  T  P  N  I  T  N  C  T  N  T  K  Y  A  C  T  F  T  L  S  C  K  H  G  C  S  V  F  S  T  S  V  F  F  L  D  S  I  E  C  C  A  S  S  G  K  V  Y  S  *  E  E  Q  Y  K  C  S  V  S  L  F  N  A  L  E  A  *  C  L  Y  W  *  F  W  C  P  *  L  W  W  F  F  S  W  N  C  C  L  S  *  *  R  C  *  W  L  R  *  I  *  W  *  *  T  L  Q  I  *  G  S  S  S  *  Y  P  S  S  *  S  W  R :   L  L  F  C  F  E  G  M  E  W  A  T  S  W  S  S  C  S  T  S  C  *  *  Y  R  *  G  S  Y  N  Y  G  F  S  *  R  K  Y  G  C  Q  W  I  H  R  E  D  W  Y  P  V  S  I  D  *  K  V  V  W  *  R  I  E  R  S  S  *  E  G  R  G  S  C  D  Q  N  G  L  D  G  V  N  A  S  S  *  S  A  S  *  V  *  I  V  D  *  *  Q  R  *  V  W  G  S  L  *  *  A  D  E  F  H  Q  E  L  Q  R  T  C  S  N  T  *  E  G  R  L  Y  Y  V  H  A  S  L  Y  Y  L  V  L  S  *  S  F  H  S  *  Q  P  V  Q  I  S  V  H  *  S  R  E  I  L  R  S  *  S  G  A  G  L  W  G  G  V  P  R  E  G  C  C  L  *  E  L  E  A  A  L  R  A  *  S  C  K  *  E  *  P  F  L  G  L  V  G  L  C  D  G  F  S  Y  *  M  F  N  E  A  K  A  I  Q  Q  R  M  C  *  G  G  H  E  I  T  * :   S  T  G  *  Q  D  K  E  M  H  G  R  S  R  G  *  C  *  K  *  C  V  E  D  *  A  R  P  P   : G  W  P  R  T  S  W  R  C  D  N  L  T  N  N  G  H  Q  *  Y  S  I  S  R :   E  I  G  E  D  C  C  F  K  S  H  M  C  W  F  *  G  N  N  *  T  F  D  M  F  K  W  R :   S  *  N  K  P  V  P  R  K  E  R  W  L  L  A  G  S  *  I  *  H  N  C  L  Q   : G  Y  I  *  R  K  S  L  *  V  P  F  G  E  R  R  S  V  *  R  R  W  I  H  I  L  *  S :   R  W  T  W  K  V  F  G  K  Q  R  R  M  L  V  R  N  Q  K  W  A  N  I  F  S  M  F   : R  G  *  T  I  R  L  *  V  S  V  W  F  *  R  G  W  P  *  M  *  R :   C  R  *  M  Q  G  R  T  C  L  S  V  *  W  L  Q  L  *  G  H  M  G  W  I  R  V  *  V  Q  R  K  S  T  L  H  N  G  A  *  Y  L  Y  R :   K  T  L  I  K  D  R  T  G  P  Y  V  L  F  P  S  H  C  S  G  G  W  F  S  W  L  H  L  L  Q  V  *  T  S   : V  I  H  G  L  R  D  Y  G  H  H  V  A  V  H  A  S  R  Q  P  Q  S  E  S  G  C  P  S  *  S  *  T  S  T  T  E  L  G  M  M  S  I  S  G  S  *  C  M  I  S  H  P  S  L  G  Y  F  S  T  Y  G  Y  *  R  R  *  R  T  E  S  Y  L  E  E  N  Q  I  L  D  A  G  L  P  T  L  *  S  I  K  T  W  L  F  P  F  V  Y  N  R  V  L  R  C  K  C  R  V  H  L  C  *  K  D  I  *  N  K  I  Y  L  R  R  Q  P  M  A  F  Y  I  I  Q  Q  L  H  P  S  *  I  </first_frame>
            <second_frame>  T  Q  K  L  Q  K  V  S  S  V  H  R  V  F  S  *  H  F  L  D  F  W  P  L  M  *  S  I  C  F  F  L  L  F  T  P  L  T  N  F  L  K  P  Q  T  L  Q  I  V  P  I  L  N  M  L  V  P  L  H  S  P  A  N  M  A  A  L  F  F  R  L  L  F  F  S  L  I  V  S  N  V  V  L  V  Q  A  R  F  I  V  E  K  N  S  I  S  V  L  S  P  Y  S  M  H  S  K  H  D  A  S  I  G  N  F  G  V  P  D  Y  G  G  S  L  V  G  T  V  V  Y  P  S  K  G  A  N  G  C  A  E  F  D  G  D  K  P  F  K  S  K  G  H  R  P  N  I  L  L  L  D  R  G   : D  C  Y  F  A  L  K  V  W  N  G  Q  Q  A  G  A  A  A  V  L  V  A  D  S  I  D  E  A  L  I  T  M  D  S  P  E  E  S  T  D  A  N  G  Y  I  E  K  I  G  I  P  S  A  L  I  E  K  S  F  G  D  A  L  K  E  A  L  K  K  G  E  E  V  V  I  K  M  D  W  T  E  S  M  P  H  P  D  Q  R  V  E  Y  E  L  W  T  N  S  N  D  E  C  G  V  R  C  D  E  Q  M  N  F  I  K  N  F  K  G  H  A  Q  I  L  E  K  G  G  Y  T  M  F  T  P  H  Y  I  T  W  Y  C  P  E  A  F  I  L  S  S  Q  C  K  S  Q  C  I  N  H  G  R  Y  C  A  P  D  P  E  Q  D  F  G  E  G  Y  Q  G  K  D  V  V  F  E  N  L  R  Q  L  C  V  H  R  V  A  N  E  S  S  R  S  W  V  W  W  D  Y  V  T  D  F  H  I  R  C  S  M  K  Q  K  R  Y  S  K  E  C  A  E  E  V  M  K  S  L   : D  L  P  V  D  K  I  K  K  C  M  G  D  P  E  A  N  V  E  N  D  V  L  K  T  E  Q  D  L  Q  :  V  G  R  G  P  R  G  D  V  T  I  L  P  T  M  V  I  N  D  I  Q  Y  R   : G  K  L  E  R  T  A  V  L  K  A  I  C  A  G  F  K  E  T  T  E  P  S  I  C  L  S  G   : D  L  E  T  N  Q  C  L  E  R  N  G  G  C  W  R  D  P  K  S  N  I  T  A  C  K  :  D  T  Y  R  G  R  V  C  E  C  P  L  V  N  G  V  Q  Y  K  G  D  G  Y  T  S  C  E   : A  V  G  P  G  R  C  S  V  N  N  G  G  C  W  S  E  T  R  N  G  Q  T  Y  S  A  C  S  :  E  G  E  L  S  G  C  K  C  P  Y  G  F  K  G  D  G  H  K  C  E   : D  V  D  E  C  K  E  G  L  V  C  Q  C  D  G  C  S  C  K  D  T  W  G  G  F  E  C  K  C  K  G  N  Q  L  Y  I  M  E  H  D  T  C  I   : E  R  H  S  S  K  I  G  R  V  L  M  F  S  F  L  A  I  A  V  G  A  G  L  A  G  Y  T  F  Y  K  Y  R  L  R  :  S  Y  M  D  S  E  I  M  A  I  M  S  Q  Y  M  P  L  D  N  H  N  Q  N  Q  V  V  H  H  E  A  E  P  L  Q  Q  S  S  V  *  *  V  F  L  G  A  N  V  *  F  P  I  L  L  L  D  T  F  R  L  M  D  I  E  G  D  E  E  Q  S  H  I  *  R  K  T  R  Y  L  M  L  V  C  Q  L  S  S  P  *  R  P  G  F  S  H  L  C  I  I  E  F  *  D  V  N  A  G  F  T  C  V  K  R  T  Y  R  T  K  Y  T  C  E  G  N  P  W  P  F  T  L  F  S  N  C  I  L  L  K  S </second_frame>
            <third_frame>   H  K  N  S  K  K  S  P  L  F  T  E  S  S  L  D  T  F  L  I  F  G  P  L  C  N  P  S  V  S  F  S  S  L  H  L  L  Q  T  F  *  N  P  K  H  Y  K  L  Y  Q  Y  *  I  C  L  Y  L  Y  T  L  L  Q  T  W  L  L  C  F  F  D  F  C  F  F  P  *  *  Y  R  M  L  C  *  F  R  Q  G  L  *  L  R  R  T  V  *  V  F  C  L  L  I  Q  C  T  R  S  M  M  P  L  L  V  I  L  V  S  L  I  M  V  V  L  *  L  E  L  L  F  I  L  V  K  V  L  M  A  A  L  N  L  M  V  I  N  P  S  N  L  R  V  I  V  L  I  S  F  F  L  I  V  E  :  T  A  I  L  L  *  R  Y  G  M  G  N  K  L  E  Q  L  Q  Y  *  L  L  I  V  *  M  R  L  L  *  L  W  I  L  L  K  K  V  R  M  P  M  D  T  S  R  R  L  V  S  R  Q  H  *  L  K  S  R  L  V  T  H  *  K  K  L  L  R  R  E  R  K  L  *  S  K  W  I  G  R  S  Q  C  L  I  L  I  S  E  L  S  M  N  C  G  L  I  A  T  M  S  V  G  F  V  V  M  S  R  *  I  S  S  R  T  S  K  D  M  L  K  Y  L  R  R  A  V  I  L  C  S  R  L  I  I  L  L  G  T  V  L  K  L  S  F  L  A  A  S  A  N  L  S  A  L  I  T  G  D  I  A  L  L  I  R  S  R  T  L  G  R  G  T  K  G  R  M  L  S  L  R  T  *  G  S  F  A  C  I  E  L  Q  M  R  V  A  V  L  G  F  G  G  T  M  *  R  I  F  I  L  D  V  Q  *  S  K  S  D  T  A  K  N  V  L  R  R  S  *  N  H  L  :  I  Y  R  L  T  R  *  R  N  A  W  A  I  Q  R  L  M  L  K  M  M  C  *  R  L  S  K  T  S  R :   L  A  E  D  L  V  E  M  *  Q  S  Y  Q  Q  W  S  S  M  I  F  N  I  E  :  G  N  W  R  G  L  L  F  *  K  P  Y  V  L  V  L  R  K  Q  L  N  L  R  Y  V  *  V  E  :  I  L  K  Q  T  S  A  *  K  G  T  V  A  V  G  G  I  L  N  L  T  *  L  P  A  R :   I  H  I  E  E  E  F  V  S  A  L  W  *  T  A  F  S  I  K  E  M  D  T  H  L  V  K  :  P  L  D  L  E  G  V  R  *  T  T  E  D  A  G  Q  K  P  E  M  G  K  H  I  Q  H  V  Q :   R  V  N  Y  Q  A  V  S  V  R  M  V  L  K  G  M  A  I  N  V  K  :  M  *  M  N  A  R  K  D  L  F  V  S  V  M  A  A  A  V  R  T  H  G  V  D  S  S  V  S  A  K  E  I  N  S  T  *  W  S  M  I  L  V  *  :  K  D  T  H  Q  R  S  D  G  S  L  C  S  L  S  *  P  L  Q  W  G  L  V  *  L  V  T  P  F  T  S  I  D  F  G :   H  T  W  T  Q  R  L  W  P  S  C  R  S  T  C  L  S  T  T  T  I  R  I  R  L  S  I  M  K  L  N  L  Y  N  R  A  R  Y  D  E  Y  F  W  E  L  M  Y  D  F  P  S  F  S  W  I  L  F  D  L  W  I  L  K  E  M  K  N  R  V  I  F  R  G  K  P  D  T  *  C  W  F  A  N  S  L  V  H  K  D  L  A  F  P  I  C  V  *  *  S  F  E  M  *  M  Q  G  S  L  V  L  K  G  H  I  E  Q  N  I  L  A  K  A  T  H  G  L  L  H  Y  S  A  I  A  S  F  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47416" stop="47011"/>
                    <exon start="46467" stop="45775"/>
                    <exon start="45680" stop="45592"/>
                    <exon start="45449" stop="45380"/>
                    <exon start="45229" stop="45146"/>
                    <exon start="45045" stop="44969"/>
                    <exon start="44851" stop="44770"/>
                    <exon start="44632" stop="44550"/>
                    <exon start="44463" stop="44400"/>
                    <exon start="44300" stop="44172"/>
                    <exon start="43964" stop="43861"/>
                    <exon start="43773" stop="43657"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1995</number_coding_nucleotides>
                  <number_encoded_amino_acids>665</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SICFFLLFTPLTNFLKPQTLQIVPILNMLVPLHSPANMAALFFRLLFFSLIVSNVVLVQARFIVEKNSISVLSPYSMHSKHDASIGNFGVPDYGGSLVGTVVYPSKGANGCAEFDGDKPFKSKGHRPNILLLDRGDCYFALKVWNGQQAGAAAVLVADSIDEALITMDSPEESTDANGYIEKIGIPSALIEKSFGDALKEALKKGEEVVIKMDWTESMPHPDQRVEYELWTNSNDECGVRCDEQMNFIKNFKGHAQILEKGGYTMFTPHYITWYCPEAFILSSQCKSQCINHGRYCAPDPEQDFGEGYQGKDVVFENLRQLCVHRVANESSRSWVWWDYVTDFHIRCSMKQKRYSKECAEEVMKSLDLPVDKIKKCMGDPEANVENDVLKTEQDLQVGRGPRGDVTILPTMVINDIQYRGKLERTAVLKAICAGFKETTEPSICLSGDLETNQCLERNGGCWRDPKSNITACKDTYRGRVCECPLVNGVQYKGDGYTSCEAVGPGRCSVNNGGCWSETRNGQTYSACSEGELSGCKCPYGFKGDGHKCEDVDECKEGLVCQCDGCSCKDTWGGFECKCKGNQLYIMEHDTCIERHSSKIGRVLMFSFLAIAVGAGLAGYTFYKYRLRSYMDSEIMAIMSQYMPLDNHNQNQVVHHEAEPLQQSSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="58815" PGL_stop="54532"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58815" e_stop="58553"/>
            <exon e_start="57358" e_stop="57230"/>
            <exon e_start="57091" e_stop="57035"/>
            <exon e_start="56894" e_stop="56802"/>
            <exon e_start="56553" e_stop="56351"/>
            <exon e_start="56232" e_stop="56141"/>
            <exon e_start="55957" e_stop="55743"/>
            <exon e_start="55663" e_stop="55474"/>
            <exon e_start="55374" e_stop="55060"/>
            <exon e_start="54557" e_stop="54532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.996"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.783" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.851" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.273" e_score="1.000"/>
          <exon-only e_score="0.696"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="58815" e_stop="58553" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58552" i_stop="57359" i_length="1194"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57358" e_stop="57230" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57229" i_stop="57092" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57091" e_stop="57035" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.783">
            <gDNA_intron_boundary i_start="57034" i_stop="56895" i_length="140"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56894" e_stop="56802" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56553" e_stop="56351" e_length="203"/>
          </exon>
          <intron i_serial="5" don_prob="0.887" acc_prob="0.966">
            <gDNA_intron_boundary i_start="56350" i_stop="56233" i_length="118"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="56232" e_stop="56141" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.949">
            <gDNA_intron_boundary i_start="56140" i_stop="55958" i_length="183"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="55957" e_stop="55743" e_length="215"/>
          </exon>
          <intron i_serial="7" don_prob="0.851" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55742" i_stop="55664" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="55663" e_stop="55474" e_length="190"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.992">
            <gDNA_intron_boundary i_start="55473" i_stop="55375" i_length="99"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="55374" e_stop="55060" e_length="315"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.273">
            <gDNA_intron_boundary i_start="55059" i_stop="54558" i_length="502"/>
          </intron>
          <exon e_serial="10" e_score="0.696">
            <gDNA_exon_boundary e_start="54557" e_stop="54532" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58815" stop="58553"/>
              <exon start="57358" stop="57230"/>
              <exon start="57091" stop="57035"/>
              <exon start="56894" stop="56802"/>
              <exon start="56553" stop="56398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58772" stop="58553"/>
              <exon start="57358" stop="57230"/>
              <exon start="57091" stop="57035"/>
              <exon start="56894" stop="56802"/>
              <exon start="56553" stop="56456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58772" stop="58553"/>
              <exon start="57358" stop="57230"/>
              <exon start="57091" stop="57035"/>
              <exon start="56894" stop="56802"/>
              <exon start="56553" stop="56511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58772" stop="58553"/>
              <exon start="57358" stop="57230"/>
              <exon start="57091" stop="57035"/>
              <exon start="56894" stop="56833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58772" stop="58553"/>
              <exon start="57358" stop="57230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58769" stop="58553"/>
              <exon start="57358" stop="57230"/>
              <exon start="57091" stop="57035"/>
              <exon start="56894" stop="56802"/>
              <exon start="56553" stop="56359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58769" stop="58553"/>
              <exon start="57358" stop="57230"/>
              <exon start="57091" stop="57035"/>
              <exon start="56894" stop="56802"/>
              <exon start="56553" stop="56485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58767" stop="58553"/>
              <exon start="57358" stop="57230"/>
              <exon start="57091" stop="57035"/>
              <exon start="56894" stop="56802"/>
              <exon start="56553" stop="56502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58743" stop="58553"/>
              <exon start="57358" stop="57230"/>
              <exon start="57091" stop="57035"/>
              <exon start="56894" stop="56802"/>
              <exon start="56553" stop="56351"/>
              <exon start="56232" stop="56193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58696" stop="58553"/>
              <exon start="57358" stop="57230"/>
              <exon start="57091" stop="57035"/>
              <exon start="56894" stop="56802"/>
              <exon start="56553" stop="56351"/>
              <exon start="56232" stop="56191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57286" stop="57230"/>
              <exon start="57091" stop="57035"/>
              <exon start="56894" stop="56802"/>
              <exon start="56553" stop="56351"/>
              <exon start="56232" stop="56141"/>
              <exon start="55957" stop="55774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57085" stop="57035"/>
              <exon start="56894" stop="56802"/>
              <exon start="56553" stop="56351"/>
              <exon start="56232" stop="56141"/>
              <exon start="55957" stop="55746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57072" stop="57035"/>
              <exon start="56894" stop="56802"/>
              <exon start="56553" stop="56351"/>
              <exon start="56232" stop="56141"/>
              <exon start="55957" stop="55933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57072" stop="57035"/>
              <exon start="56894" stop="56802"/>
              <exon start="56553" stop="56351"/>
              <exon start="56232" stop="56193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57070" stop="57035"/>
              <exon start="56894" stop="56802"/>
              <exon start="56553" stop="56351"/>
              <exon start="56232" stop="56141"/>
              <exon start="55957" stop="55911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57063" stop="57035"/>
              <exon start="56894" stop="56802"/>
              <exon start="56553" stop="56351"/>
              <exon start="56232" stop="56141"/>
              <exon start="55957" stop="55758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57063" stop="57035"/>
              <exon start="56894" stop="56802"/>
              <exon start="56553" stop="56351"/>
              <exon start="56232" stop="56141"/>
              <exon start="55957" stop="55913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57063" stop="57035"/>
              <exon start="56894" stop="56802"/>
              <exon start="56553" stop="56351"/>
              <exon start="56232" stop="56161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57063" stop="57035"/>
              <exon start="56894" stop="56802"/>
              <exon start="56553" stop="56409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56804" stop="56802"/>
              <exon start="56553" stop="56351"/>
              <exon start="56232" stop="56141"/>
              <exon start="55957" stop="55750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56548" stop="56351"/>
              <exon start="56232" stop="56141"/>
              <exon start="55957" stop="55743"/>
              <exon start="55663" stop="55648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56548" stop="56351"/>
              <exon start="56232" stop="56141"/>
              <exon start="55957" stop="55749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56548" stop="56351"/>
              <exon start="56232" stop="56141"/>
              <exon start="55957" stop="55768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56542" stop="56351"/>
              <exon start="56232" stop="56141"/>
              <exon start="55957" stop="55743"/>
              <exon start="55663" stop="55644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56506" stop="56351"/>
              <exon start="56232" stop="56141"/>
              <exon start="55957" stop="55743"/>
              <exon start="55663" stop="55498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56226" stop="56141"/>
              <exon start="55957" stop="55743"/>
              <exon start="55663" stop="55501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55796" stop="55743"/>
              <exon start="55663" stop="55474"/>
              <exon start="55374" stop="55060"/>
              <exon start="54557" stop="54532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231100" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55774" stop="55743"/>
              <exon start="55663" stop="55474"/>
              <exon start="55374" stop="55060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55634" stop="55474"/>
              <exon start="55374" stop="55060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238012" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55583" stop="55474"/>
              <exon start="55374" stop="55060"/>
              <exon start="54557" stop="54532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237621" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55490" stop="55474"/>
              <exon start="55374" stop="55060"/>
              <exon start="54557" stop="54535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233729" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTAAATCAAACATTAATTGCTTTCATTTTTGTGCAGAGATCGAAAATGCAGAAGCATAATATTAGTAATGTTTATAACTTGTTCAACATTATGTTGTTGATACTTGTTGGGTTGCCATTGAGCTCGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCG : ATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGG : GCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCA : GTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGG : GTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAG : TTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATG : GGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTGGTGGTGGAGCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTATGATTATGCTTCTACA : GTTGGTATAGTGGATCCAAAAGAGGCCTATGGTATAACTCAGCCAATACAATACTATAAAGCAGCGACGCTGGCTTGTAAGACTAAGAAGCAAAACATGAAATCGGTATTCCCTAACATTAACGATAAGGACATACCCTTTATCTGCATGGATTTATTATATGAATACACTTTGCTGGTAAATGGATTTG : GTATTGATCCAATAAGAAAGATTACAGTGGTGCATCAAGTTAATTACAAAAATCACCTTGTTGAAGCTGCATGGCCATTAGGCTCTGCTATTGATGCTGTCTCATCCACAACATCAGAAAATATGATTTCATATGTTGGGAGGATAAGTTATTAGTGTTAATTTCATGTTTACTTAAGGACTTTGTTGATTTGTTTTCATGTGTTAAAAATTGATTAGAGCAATTTCTCCTATGGTCGATTTAGTAGGAGCTGCAGCTGTTTCTATTGATTCTCCTTATTTGGTATTTCAAAAATAAATGGTGTTTTTCTTTTTA : GAGAAAAAAAAAAGAAAAAGGGACAA</gDNA_template>
            <first_frame> F  *  I  K  H  *  L  L  S  F  L  C  R  D  R  K  C  R  S  I  I  L  V  M  F  I  T  C  S  T  L  C  C  *  Y  L  L  G  C  H  *  A  R  M  P  M  I  I  R  R  N  M  Q  *  Y  L  T  L  E  A  L  V  A  E  F  M  S  F  V  L  T  Q  I  W  I  S  S  I  S  A  M  I  L  N  S  S  W  R :   *  N  Q  V  *  V  H  M  Q  M  I  Q  R  Q  L  Q  I  L  *  S  P  F  L  R  K  L  K  L  L  F  L  R  I  Y  S  L  K  P  L  L  K  L  G :   Q  L  Q  G  *  G  Y  *  R  V  I  H  L  K  R  F  C  K  Q :   *  E  I  C  *  K  M  K  L  L  *  V  T  R  M  N  G  S  L  F  S  K  E  L  *  K  V  L  I  F  G :   L  L  *  T  I  C  M  G  I  W  A  K  I  T  Q  T  P  L  L  Q  L  I  L  E  V  D  Q  F  K  L  L  M  L  S  Q  N  K  V  L  *  M  L  Q  S  Y  Q  M  E  T  L  M  S  N  K  K  H  F  L  E  L  I  I  T  S  M  F  T   : V  F  *  I  M  D  Y  *  Q  L  E  L  I  S  *  R  L  L  K  I  T  L  V  H  A  S  W  K  G  T  M  :  G  T  T  H  I  M  E  Y  L  I  K  L  H  H  E  N  K  V  Q  I  S  E  D  V  K  Q  *  L  E  N  C  F  R  L  M  H  L  A  I  T  K  I  V  H  L  L  G  F  G  M  V  V  V  E  L  E  P  K  I  S  I  S  L  H  F  S  M  I  M  L  L  Q :   L  V  *  W  I  Q  K  R  P  M  V  *  L  S  Q  Y  N  T  I  K  Q  R  R  W  L  V  R  L  R  S  K  T  *  N  R  Y  S  L  T  L  T  I  R  T  Y  P  L  S  A  W  I  Y  Y  M  N  T  L  C  W  *  M  D  L  :  V  L  I  Q  *  E  R  L  Q  W  C  I  K  L  I  T  K  I  T  L  L  K  L  H  G  H  *  A  L  L  L  M  L  S  H  P  Q  H  Q  K  I  *  F  H  M  L  G  G  *  V  I  S  V  N  F  M  F  T  *  G  L  C  *  F  V  F  M  C  *  K  L  I  R  A  I  S  P  M  V  D  L  V  G  A  A  A  V  S  I  D  S  P  Y  L  V  F  Q  K  *  M  V  F  F  F  L  :  E  K  K  K  R  K  R  D   </first_frame>
            <second_frame>  F  K  S  N  I  N  C  F  H  F  C  A  E  I  E  N  A  E  A  *  Y  *  *  C  L  *  L  V  Q  H  Y  V  V  D  T  C  W  V  A  I  E  L  A  C  Q  *  L  F  G  E  I  C  S  D  I  *  R  W  K  H  W  *  Q  S  S  C  L  S  F  *  L  K  F  G  S  H  Q  Y  R  Q  *  S  *  T  L  L  G   : D  K  T  R  S  E  F  I  C  R  *  S  K  G  S  C  K  F  S  K  A  P  S  *  E  S  *  S  C  Y  S  *  E  F  T  V  S  N  P  Y  *  S  W   : G  N  C  R  A  E  V  I  K  G  *  F  I  *  K  D  S  A  S   : S  K  R  Y  A  E  K  *  N  Y  S  E  L  Q  G  *  M  G  L  C  S  R  R  N  S  R  R  F  L  F  L   : G  C  F  E  L  F  V  W  E  F  G  Q  K  L  P  R  H  H  C  Y  N  *  S  W  R  W  I  S  S  N  C  L  C  C  L  K  T  K  C  Y  K  C  S  K  V  T  K  W  R  R  L  C  P  T  K  S  T  S  W  N  *  L  L  P  L  C  S  Q  :  F  S  K  L  W  T  I  S  S  S  S  *  Y  L  E  G  F  *  K  L  H  *  S  M  H  R  G  R  A  Q  W :   V  L  H  I  *  W  S  I  L  *  S  C  I  T  K  T  R  S  K  Y  Q  K  M  *  S  N  N  *  K  I  A  S  D  *  C  T  L  Q  S  Q  K  L  F  I  C  W  D  L  E  W  W  W  W  S  W  N  Q  K  S  L  Y  L  F  I  F  L  *  L  C  F  Y   : S  W  Y  S  G  S  K  R  G  L  W  Y  N  S  A  N  T  I  L  *  S  S  D  A  G  L  *  D  *  E  A  K  H  E  I  G  I  P  *  H  *  R  *  G  H  T  L  Y  L  H  G  F  I  I  *  I  H  F  A  G  K  W  I  W :   Y  *  S  N  K  K  D  Y  S  G  A  S  S  *  L  Q  K  S  P  C  *  S  C  M  A  I  R  L  C  Y  *  C  C  L  I  H  N  I  R  K  Y  D  F  I  C  W  E  D  K  L  L  V  L  I  S  C  L  L  K  D  F  V  D  L  F  S  C  V  K  N  *  L  E  Q  F  L  L  W  S  I  *  *  E  L  Q  L  F  L  L  I  L  L  I  W  Y  F  K  N  K  W  C  F  S  F  * :   R  K  K  K  E  K  G  T  </second_frame>
            <third_frame>   L  N  Q  T  L  I  A  F  I  F  V  Q  R  S  K  M  Q  K  H  N  I  S  N  V  Y  N  L  F  N  I  M  L  L  I  L  V  G  L  P  L  S  S  H  A  N  D  Y  S  E  K  Y  A  V  I  F  D  A  G  S  T  G  S  R  V  H  V  F  R  F  N  S  N  L  D  L  I  N  I  G  N  D  L  E  L  F  L  A  :  I  K  P  G  L  S  S  Y  A  D  D  P  K  A  A  A  N  S  L  K  P  L  L  E  K  A  E  A  V  I  P  K  N  L  Q  S  Q  T  P  I  K  V  G  :  A  T  A  G  L  R  L  L  K  G  D  S  S  E  K  I  L  Q  A  :  V  R  D  M  L  K  N  E  T  T  L  S  Y  K  D  E  W  V  S  V  L  E  G  T  L  E  G  S  Y  F  W  :  V  A  L  N  Y  L  Y  G  N  L  G  K  N  Y  P  D  T  I  A  T  I  D  L  G  G  G  S  V  Q  I  A  Y  A  V  S  K  Q  S  A  I  N  A  P  K  L  P  N  G  D  A  Y  V  Q  Q  K  A  L  L  G  T  N  Y  Y  L  Y  V  H  S :   F  L  N  Y  G  L  L  A  A  R  A  D  I  L  K  A  S  K  N  Y  T  S  P  C  I  V  E  G  H  N   : G  Y  Y  T  Y  N  G  V  S  Y  K  A  A  S  R  K  Q  G  P  N  I  R  R  C  K  A  I  I  R  K  L  L  Q  I  D  A  P  C  N  H  K  N  C  S  F  A  G  I  W  N  G  G  G  G  A  G  T  K  N  L  Y  I  S  S  F  F  Y  D  Y  A  S  T  :  V  G  I  V  D  P  K  E  A  Y  G  I  T  Q  P  I  Q  Y  Y  K  A  A  T  L  A  C  K  T  K  K  Q  N  M  K  S  V  F  P  N  I  N  D  K  D  I  P  F  I  C  M  D  L  L  Y  E  Y  T  L  L  V  N  G  F   : G  I  D  P  I  R  K  I  T  V  V  H  Q  V  N  Y  K  N  H  L  V  E  A  A  W  P  L  G  S  A  I  D  A  V  S  S  T  T  S  E  N  M  I  S  Y  V  G  R  I  S  Y  *  C  *  F  H  V  Y  L  R  T  L  L  I  C  F  H  V  L  K  I  D  *  S  N  F  S  Y  G  R  F  S  R  S  C  S  C  F  Y  *  F  S  L  F  G  I  S  K  I  N  G  V  F  L  F   : R  E  K  K  K  K  K  G  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58813" stop="58553"/>
                    <exon start="57358" stop="57230"/>
                    <exon start="57091" stop="57035"/>
                    <exon start="56894" stop="56802"/>
                    <exon start="56553" stop="56351"/>
                    <exon start="56232" stop="56141"/>
                    <exon start="55957" stop="55743"/>
                    <exon start="55663" stop="55474"/>
                    <exon start="55374" stop="55220"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1392</number_coding_nucleotides>
                  <number_encoded_amino_acids>464</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNQTLIAFIFVQRSKMQKHNISNVYNLFNIMLLILVGLPLSSHANDYSEKYAVIFDAGSTGSRVHVFRFNSNLDLINIGNDLELFLAIKPGLSSYADDPKAAANSLKPLLEKAEAVIPKNLQSQTPIKVGATAGLRLLKGDSSEKILQAVRDMLKNETTLSYKDEWVSVLEGTLEGSYFWVALNYLYGNLGKNYPDTIATIDLGGGSVQIAYAVSKQSAINAPKLPNGDAYVQQKALLGTNYYLYVHSFLNYGLLAARADILKASKNYTSPCIVEGHNGYYTYNGVSYKAASRKQGPNIRRCKAIIRKLLQIDAPCNHKNCSFAGIWNGGGGAGTKNLYISSFFYDYASTVGIVDPKEAYGITQPIQYYKAATLACKTKKQNMKSVFPNINDKDIPFICMDLLYEYTLLVNGFGIDPIRKITVVHQVNYKNHLVEAAWPLGSAIDAVSSTTSENMISYVGRISY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="57070" e_stop="56802"/>
            <exon e_start="56553" e_stop="56351"/>
            <exon e_start="56232" e_stop="56141"/>
            <exon e_start="55957" e_stop="55743"/>
            <exon e_start="55663" e_stop="55474"/>
            <exon e_start="55374" e_stop="55060"/>
            <exon e_start="54557" e_stop="54532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.996"/>
          <exon-intron don_prob="0.887" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.851" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.273" e_score="1.000"/>
          <exon-only e_score="0.696"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="57070" e_stop="56802" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56553" e_stop="56351" e_length="203"/>
          </exon>
          <intron i_serial="2" don_prob="0.887" acc_prob="0.966">
            <gDNA_intron_boundary i_start="56350" i_stop="56233" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56232" e_stop="56141" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.949">
            <gDNA_intron_boundary i_start="56140" i_stop="55958" i_length="183"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55957" e_stop="55743" e_length="215"/>
          </exon>
          <intron i_serial="4" don_prob="0.851" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55742" i_stop="55664" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55663" e_stop="55474" e_length="190"/>
          </exon>
          <intron i_serial="5" don_prob="0.975" acc_prob="0.992">
            <gDNA_intron_boundary i_start="55473" i_stop="55375" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="55374" e_stop="55060" e_length="315"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.273">
            <gDNA_intron_boundary i_start="55059" i_stop="54558" i_length="502"/>
          </intron>
          <exon e_serial="7" e_score="0.696">
            <gDNA_exon_boundary e_start="54557" e_stop="54532" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57070" stop="56802"/>
              <exon start="56553" stop="56445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57028" stop="56802"/>
              <exon start="56553" stop="56351"/>
              <exon start="56232" stop="56141"/>
              <exon start="55957" stop="55951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56804" stop="56802"/>
              <exon start="56553" stop="56351"/>
              <exon start="56232" stop="56141"/>
              <exon start="55957" stop="55750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56548" stop="56351"/>
              <exon start="56232" stop="56141"/>
              <exon start="55957" stop="55743"/>
              <exon start="55663" stop="55648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56548" stop="56351"/>
              <exon start="56232" stop="56141"/>
              <exon start="55957" stop="55749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56548" stop="56351"/>
              <exon start="56232" stop="56141"/>
              <exon start="55957" stop="55768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56542" stop="56351"/>
              <exon start="56232" stop="56141"/>
              <exon start="55957" stop="55743"/>
              <exon start="55663" stop="55644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56506" stop="56351"/>
              <exon start="56232" stop="56141"/>
              <exon start="55957" stop="55743"/>
              <exon start="55663" stop="55498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56226" stop="56141"/>
              <exon start="55957" stop="55743"/>
              <exon start="55663" stop="55501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55796" stop="55743"/>
              <exon start="55663" stop="55474"/>
              <exon start="55374" stop="55060"/>
              <exon start="54557" stop="54532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231100" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55774" stop="55743"/>
              <exon start="55663" stop="55474"/>
              <exon start="55374" stop="55060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55634" stop="55474"/>
              <exon start="55374" stop="55060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238012" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55583" stop="55474"/>
              <exon start="55374" stop="55060"/>
              <exon start="54557" stop="54532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237621" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55490" stop="55474"/>
              <exon start="55374" stop="55060"/>
              <exon start="54557" stop="54535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233729" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCAGTACATTTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGG : GTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAG : TTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATG : GGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTGGTGGTGGAGCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTATGATTATGCTTCTACA : GTTGGTATAGTGGATCCAAAAGAGGCCTATGGTATAACTCAGCCAATACAATACTATAAAGCAGCGACGCTGGCTTGTAAGACTAAGAAGCAAAACATGAAATCGGTATTCCCTAACATTAACGATAAGGACATACCCTTTATCTGCATGGATTTATTATATGAATACACTTTGCTGGTAAATGGATTTG : GTATTGATCCAATAAGAAAGATTACAGTGGTGCATCAAGTTAATTACAAAAATCACCTTGTTGAAGCTGCATGGCCATTAGGCTCTGCTATTGATGCTGTCTCATCCACAACATCAGAAAATATGATTTCATATGTTGGGAGGATAAGTTATTAGTGTTAATTTCATGTTTACTTAAGGACTTTGTTGATTTGTTTTCATGTGTTAAAAATTGATTAGAGCAATTTCTCCTATGGTCGATTTAGTAGGAGCTGCAGCTGTTTCTATTGATTCTCCTTATTTGGTATTTCAAAAATAAATGGTGTTTTTCTTTTTA : GAGAAAAAAAAAAGAAAAAGGGACAA</gDNA_template>
            <first_frame> L  K  G  D  S  S  E  K  I  L  Q  A  V  H  F  F  Y  P  F  L  L  S  L  I  G  K  L  I  L  I  I  V  L  F  D  N  P  S  S  Y  K  L  I  S  L  V  *  L  L  F  F  L  I  I  I  P  *  L  R  *  E  I  C  *  K  M  K  L  L  *  V  T  R  M  N  G  S  L  F  S  K  E  L  *  K  V  L  I  F  G :   L  L  *  T  I  C  M  G  I  W  A  K  I  T  Q  T  P  L  L  Q  L  I  L  E  V  D  Q  F  K  L  L  M  L  S  Q  N  K  V  L  *  M  L  Q  S  Y  Q  M  E  T  L  M  S  N  K  K  H  F  L  E  L  I  I  T  S  M  F  T   : V  F  *  I  M  D  Y  *  Q  L  E  L  I  S  *  R  L  L  K  I  T  L  V  H  A  S  W  K  G  T  M  :  G  T  T  H  I  M  E  Y  L  I  K  L  H  H  E  N  K  V  Q  I  S  E  D  V  K  Q  *  L  E  N  C  F  R  L  M  H  L  A  I  T  K  I  V  H  L  L  G  F  G  M  V  V  V  E  L  E  P  K  I  S  I  S  L  H  F  S  M  I  M  L  L  Q :   L  V  *  W  I  Q  K  R  P  M  V  *  L  S  Q  Y  N  T  I  K  Q  R  R  W  L  V  R  L  R  S  K  T  *  N  R  Y  S  L  T  L  T  I  R  T  Y  P  L  S  A  W  I  Y  Y  M  N  T  L  C  W  *  M  D  L  :  V  L  I  Q  *  E  R  L  Q  W  C  I  K  L  I  T  K  I  T  L  L  K  L  H  G  H  *  A  L  L  L  M  L  S  H  P  Q  H  Q  K  I  *  F  H  M  L  G  G  *  V  I  S  V  N  F  M  F  T  *  G  L  C  *  F  V  F  M  C  *  K  L  I  R  A  I  S  P  M  V  D  L  V  G  A  A  A  V  S  I  D  S  P  Y  L  V  F  Q  K  *  M  V  F  F  F  L  :  E  K  K  K  R  K  R  D   </first_frame>
            <second_frame>  *  R  V  I  H  L  K  R  F  C  K  Q  Y  I  F  F  I  P  S  Y  F  H  *  L  E  N  *  S  *  L  L  Y  Y  L  I  I  L  H  R  T  N  *  S  H  W  F  N  Y  C  F  F  L  L  *  F  L  D  *  G  K  R  Y  A  E  K  *  N  Y  S  E  L  Q  G  *  M  G  L  C  S  R  R  N  S  R  R  F  L  F  L   : G  C  F  E  L  F  V  W  E  F  G  Q  K  L  P  R  H  H  C  Y  N  *  S  W  R  W  I  S  S  N  C  L  C  C  L  K  T  K  C  Y  K  C  S  K  V  T  K  W  R  R  L  C  P  T  K  S  T  S  W  N  *  L  L  P  L  C  S  Q  :  F  S  K  L  W  T  I  S  S  S  S  *  Y  L  E  G  F  *  K  L  H  *  S  M  H  R  G  R  A  Q  W :   V  L  H  I  *  W  S  I  L  *  S  C  I  T  K  T  R  S  K  Y  Q  K  M  *  S  N  N  *  K  I  A  S  D  *  C  T  L  Q  S  Q  K  L  F  I  C  W  D  L  E  W  W  W  W  S  W  N  Q  K  S  L  Y  L  F  I  F  L  *  L  C  F  Y   : S  W  Y  S  G  S  K  R  G  L  W  Y  N  S  A  N  T  I  L  *  S  S  D  A  G  L  *  D  *  E  A  K  H  E  I  G  I  P  *  H  *  R  *  G  H  T  L  Y  L  H  G  F  I  I  *  I  H  F  A  G  K  W  I  W :   Y  *  S  N  K  K  D  Y  S  G  A  S  S  *  L  Q  K  S  P  C  *  S  C  M  A  I  R  L  C  Y  *  C  C  L  I  H  N  I  R  K  Y  D  F  I  C  W  E  D  K  L  L  V  L  I  S  C  L  L  K  D  F  V  D  L  F  S  C  V  K  N  *  L  E  Q  F  L  L  W  S  I  *  *  E  L  Q  L  F  L  L  I  L  L  I  W  Y  F  K  N  K  W  C  F  S  F  * :   R  K  K  K  E  K  G  T  </second_frame>
            <third_frame>   K  G  *  F  I  *  K  D  S  A  S  S  T  F  F  L  S  L  L  T  F  T  N  W  K  I  N  L  N  Y  C  I  I  *  *  S  F  I  V  Q  I  N  L  T  G  L  I  I  V  F  S  Y  Y  N  S  L  I  K  V  R  D  M  L  K  N  E  T  T  L  S  Y  K  D  E  W  V  S  V  L  E  G  T  L  E  G  S  Y  F  W  :  V  A  L  N  Y  L  Y  G  N  L  G  K  N  Y  P  D  T  I  A  T  I  D  L  G  G  G  S  V  Q  I  A  Y  A  V  S  K  Q  S  A  I  N  A  P  K  L  P  N  G  D  A  Y  V  Q  Q  K  A  L  L  G  T  N  Y  Y  L  Y  V  H  S :   F  L  N  Y  G  L  L  A  A  R  A  D  I  L  K  A  S  K  N  Y  T  S  P  C  I  V  E  G  H  N   : G  Y  Y  T  Y  N  G  V  S  Y  K  A  A  S  R  K  Q  G  P  N  I  R  R  C  K  A  I  I  R  K  L  L  Q  I  D  A  P  C  N  H  K  N  C  S  F  A  G  I  W  N  G  G  G  G  A  G  T  K  N  L  Y  I  S  S  F  F  Y  D  Y  A  S  T  :  V  G  I  V  D  P  K  E  A  Y  G  I  T  Q  P  I  Q  Y  Y  K  A  A  T  L  A  C  K  T  K  K  Q  N  M  K  S  V  F  P  N  I  N  D  K  D  I  P  F  I  C  M  D  L  L  Y  E  Y  T  L  L  V  N  G  F   : G  I  D  P  I  R  K  I  T  V  V  H  Q  V  N  Y  K  N  H  L  V  E  A  A  W  P  L  G  S  A  I  D  A  V  S  S  T  T  S  E  N  M  I  S  Y  V  G  R  I  S  Y  *  C  *  F  H  V  Y  L  R  T  L  L  I  C  F  H  V  L  K  I  D  *  S  N  F  S  Y  G  R  F  S  R  S  C  S  C  F  Y  *  F  S  L  F  G  I  S  K  I  N  G  V  F  L  F   : R  E  K  K  K  K  K  G  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56963" stop="56802"/>
                    <exon start="56553" stop="56351"/>
                    <exon start="56232" stop="56141"/>
                    <exon start="55957" stop="55743"/>
                    <exon start="55663" stop="55474"/>
                    <exon start="55374" stop="55220"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFIVQINLTGLIIVFSYYNSLIKVRDMLKNETTLSYKDEWVSVLEGTLEGSYFWVALNYLYGNLGKNYPDTIATIDLGGGSVQIAYAVSKQSAINAPKLPNGDAYVQQKALLGTNYYLYVHSFLNYGLLAARADILKASKNYTSPCIVEGHNGYYTYNGVSYKAASRKQGPNIRRCKAIIRKLLQIDAPCNHKNCSFAGIWNGGGGAGTKNLYISSFFYDYASTVGIVDPKEAYGITQPIQYYKAATLACKTKKQNMKSVFPNINDKDIPFICMDLLYEYTLLVNGFGIDPIRKITVVHQVNYKNHLVEAAWPLGSAIDAVSSTTSENMISYVGRISY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="55035" PGL_stop="55347"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55035" e_stop="55347"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="55035" e_stop="55347" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55035" stop="55347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232858" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCTCCATTTTAAAGTTGAAAATTAAAAAGAAAAACACCATTTATTTTTGAAATACCAAATAAGGAGAATCAATAGAAACAGCTGCAGCTCCTACTAAATCGACCATAGGAGAAATTGCTCTAATCAATTTTTAACACATGAAAACAAATCAACAAAGTCCTTAAGTAAACATGAAATTAACACTAATAACTTATCCTCCCAACATATGAAATCATATTTTCTGATGTTGTGGATGAGACAGCATCAATAGCAGAGCCTAATGGCCATGCAGCTTCAACAAGGTGATTTTTGTAATTAACTTGATGCACCA</gDNA_template>
            <first_frame> K  S  P  F  *  S  *  K  L  K  R  K  T  P  F  I  F  E  I  P  N  K  E  N  Q  *  K  Q  L  Q  L  L  L  N  R  P  *  E  K  L  L  *  S  I  F  N  T  *  K  Q  I  N  K  V  L  K  *  T  *  N  *  H  *  *  L  I  L  P  T  Y  E  I  I  F  S  D  V  V  D  E  T  A  S  I  A  E  P  N  G  H  A  A  S  T  R  *  F  L  *  L  T  *  C  T  </first_frame>
            <second_frame>  N  L  H  F  K  V  E  N  *  K  E  K  H  H  L  F  L  K  Y  Q  I  R  R  I  N  R  N  S  C  S  S  Y  *  I  D  H  R  R  N  C  S  N  Q  F  L  T  H  E  N  K  S  T  K  S  L  S  K  H  E  I  N  T  N  N  L  S  S  Q  H  M  K  S  Y  F  L  M  L  W  M  R  Q  H  Q  *  Q  S  L  M  A  M  Q  L  Q  Q  G  D  F  C  N  *  L  D  A  P </second_frame>
            <third_frame>   I  S  I  L  K  L  K  I  K  K  K  N  T  I  Y  F  *  N  T  K  *  G  E  S  I  E  T  A  A  A  P  T  K  S  T  I  G  E  I  A  L  I  N  F  *  H  M  K  T  N  Q  Q  S  P  *  V  N  M  K  L  T  L  I  T  Y  P  P  N  I  *  N  H  I  F  *  C  C  G  *  D  S  I  N  S  R  A  *  W  P  C  S  F  N  K  V  I  F  V  I  N  L  M  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0020N15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="71346" PGL_stop="67730"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71346" e_stop="71264"/>
            <exon e_start="71162" e_stop="71017"/>
            <exon e_start="70524" e_stop="70467"/>
            <exon e_start="69336" e_stop="68808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71346" e_stop="71264" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71162" e_stop="71017" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70524" e_stop="70467" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69336" e_stop="68808" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71346" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71341" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71341" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71333" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279058" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71332" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71330" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71327" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71327" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71323" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71323" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71323" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71323" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71323" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71322" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71322" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71321" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71321" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71321" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71321" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71318" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71318" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71318" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336706" strand="+"/>
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          <PGS_line>
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          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTCCTTTCATCGTCGTCCCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG : GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG : GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG : AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTGAATATTCTGTTCTGTTTAAAAACTACTAACCTTTTGTGTTAGCGAATTTAGTTTTAGAGGTAATTTGGGATAAAAACGTGT</gDNA_template>
            <first_frame> T  S  F  H  R  R  P  Q  N  P  S  R  S  H  F  H  R  S  L  E  A  N  S  F  S  K  P  W :   R  K  L  K  L  M  L  R  P  D  S  Q  G  R  E  H  S  R  S  S  A  T  E  E  *  I  W  I  L  F  L  T  C  L  L  M  S  L  L  S  F  T  L  L  V  L  A  E   : G  S  R  G  V  *  R  G  S  L  W  L  *  S  R  S  C  A  R  R :   N  V  R  P  H  L  V  R  S  Q  R  L  *  E  H  I  *  G  T  *  S  L  F  L  R  *  L  E  V  S  L  E  S  T  M  E  K  L  S  I  K  L  R  S  S  L  R  *  L  V  T  T  *  L  S  S  P  S  H  T  S  L  S  S  T  V  G  P  V  L  V  L  L  T  L  Q  G  S  F  H  *  S  D  S  S  K  S  V  Y  M  V  S  S  N  T  S  T  F  V  L  L  Q  F  *  *  E  Q  W  I  L  N  G  S  L  F  E  T  S  N  L  L  I  H  C  N  I  S  M  I  V  L  L  F  R  F  L  Y  L  F  V  S  L  K  L  V  T  L  C  L  N  I  L  F  C  L  K  T  T  N  L  L  C  *  R  I  *  F  *  R  *  F  G  I  K  T  C </first_frame>
            <second_frame>  P  P  F  I  V  V  P  K  T  L  A  A  V  T  S  I  G  A  *  K  P  I  H  S  R  S  H   : G  G  S  *  S  *  C  C  D  R  T  A  K  E  E  N  I  Q  E  V  Q  L  Q  R  S  R  S  G  F  S  S  *  H  V  Y  *  *  A  C  *  A  L  P  C  S  S  S  Q  K  :  V  P  E  G  F  E  E  E  A  Y  G  F  D  Q  E  A  A  Q  G   : E  T  *  G  P  T  W  *  E  A  R  G  C  E  N  T  F  E  E  H  D  H  C  S  *  D  D  W  K  C  H  W  N  L  Q  W  K  N  F  Q  S  N  *  G  Q  A  *  D  D  *  S  L  L  S  *  V  L  H  L  I  Q  A  C  Q  A  R  *  A  R  Y  W  C  Y  S  L  F  K  V  H  S  I  E  V  I  H  P  N  L  S  T  W  F  L  V  I  L  V  L  L  F  Y  C  N  F  D  E  N  S  G  Y  *  M  V  L  C  L  R  L  V  I  C  *  Y  I  A  T  F  Q  *  L  C  F  Y  L  D  F  C  T  F  L  F  L  *  N  W  L  L  C  V  *  I  F  C  S  V  *  K  L  L  T  F  C  V  S  E  F  S  F  R  G  N  L  G  *  K  R   </second_frame>
            <third_frame>   L  L  S  S  S  S  P  K  P  *  P  Q  S  L  P  *  E  L  R  S  Q  F  I  L  E  A  M  :  A  E  V  E  A  D  V  A  T  G  Q  P  R  K  R  T  F  K  K  F  S  Y  R  G  V  D  L  D  S  L  L  D  M  S  T  D  E  L  V  K  L  Y  P  A  R  P  R  R  R :   F  Q  R  G  L  K  R  K  P  M  A  L  I  K  K  L  R  K  A  :  K  R  E  A  P  P  G  E  K  P  E  V  V  R  T  H  L  R  N  M  I  I  V  P  E  M  I  G  S  V  I  G  I  Y  N  G  K  T  F  N  Q  I  E  V  K  P  E  M  I  S  H  Y  L  A  E  F  S  I  S  Y  K  P  V  K  H  G  R  P  G  I  G  A  T  H  S  S  R  F  I  P  L  K  *  F  I  Q  I  C  L  H  G  F  *  *  Y  *  Y  F  C  F  T  A  I  L  M  R  T  V  D  T  E  W  F  F  V  *  D  *  *  F  A  D  T  L  Q  H  F  N  D  C  A  S  I  *  I  F  V  P  F  C  F  S  E  I  G  Y  F  V  S  E  Y  S  V  L  F  K  N  Y  *  P  F  V  L  A  N  L  V  L  E  V  I  W  D  K  N  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71296" stop="71264"/>
                    <exon start="71162" stop="71017"/>
                    <exon start="70524" stop="70467"/>
                    <exon start="69336" stop="69088"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELRSQFILEAMAEVEADVATGQPRKRTFKKFSYRGVDLDSLLDMSTDELVKLYPARPRRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEVVRTHLRNMIIVPEMIGSVIGIYNGKTFNQIEVKPEMISHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71346" e_stop="71264"/>
            <exon e_start="71162" e_stop="71017"/>
            <exon e_start="70524" e_stop="70467"/>
            <exon e_start="69336" e_stop="68910"/>
            <exon e_start="68475" e_stop="68452"/>
            <exon e_start="68297" e_stop="68276"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.811" acc_prob="0.230" e_score="0.542"/>
          <exon-only e_score="0.545"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71346" e_stop="71264" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71162" e_stop="71017" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70524" e_stop="70467" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69336" e_stop="68910" e_length="427"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68909" i_stop="68476" i_length="434"/>
          </intron>
          <exon e_serial="5" e_score="0.542">
            <gDNA_exon_boundary e_start="68475" e_stop="68452" e_length="24"/>
          </exon>
          <intron i_serial="5" don_prob="0.811" acc_prob="0.230">
            <gDNA_intron_boundary i_start="68451" i_stop="68298" i_length="154"/>
          </intron>
          <exon e_serial="6" e_score="0.545">
            <gDNA_exon_boundary e_start="68297" e_stop="68276" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71346" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71341" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71333" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279058" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71332" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71330" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71327" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71323" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71323" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71323" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71323" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTCCTTTCATCGTCGTCCCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG : GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG : GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG : AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTG : CAACATTTAGTGAAATTAGAAAAT : GTGACTCCAGTTGATGGGAGCC</gDNA_template>
            <first_frame> T  S  F  H  R  R  P  Q  N  P  S  R  S  H  F  H  R  S  L  E  A  N  S  F  S  K  P  W :   R  K  L  K  L  M  L  R  P  D  S  Q  G  R  E  H  S  R  S  S  A  T  E  E  *  I  W  I  L  F  L  T  C  L  L  M  S  L  L  S  F  T  L  L  V  L  A  E   : G  S  R  G  V  *  R  G  S  L  W  L  *  S  R  S  C  A  R  R :   N  V  R  P  H  L  V  R  S  Q  R  L  *  E  H  I  *  G  T  *  S  L  F  L  R  *  L  E  V  S  L  E  S  T  M  E  K  L  S  I  K  L  R  S  S  L  R  *  L  V  T  T  *  L  S  S  P  S  H  T  S  L  S  S  T  V  G  P  V  L  V  L  L  T  L  Q  G  S  F  H  *  S  D  S  S  K  S  V  Y  M  V  S  S  N  T  S  T  F  V  L  L  Q  F  *  *  E  Q  W  I  L  N  G  S  L  F  E  T  S  N  L  L  I  H  C  N  I  S  M  I  V  L  L  F  R  F  L  Y  L  F  V  S  L  :  Q  H  L  V  K  L  E  N  :  V  T  P  V  D  G  S  </first_frame>
            <second_frame>  P  P  F  I  V  V  P  K  T  L  A  A  V  T  S  I  G  A  *  K  P  I  H  S  R  S  H   : G  G  S  *  S  *  C  C  D  R  T  A  K  E  E  N  I  Q  E  V  Q  L  Q  R  S  R  S  G  F  S  S  *  H  V  Y  *  *  A  C  *  A  L  P  C  S  S  S  Q  K  :  V  P  E  G  F  E  E  E  A  Y  G  F  D  Q  E  A  A  Q  G   : E  T  *  G  P  T  W  *  E  A  R  G  C  E  N  T  F  E  E  H  D  H  C  S  *  D  D  W  K  C  H  W  N  L  Q  W  K  N  F  Q  S  N  *  G  Q  A  *  D  D  *  S  L  L  S  *  V  L  H  L  I  Q  A  C  Q  A  R  *  A  R  Y  W  C  Y  S  L  F  K  V  H  S  I  E  V  I  H  P  N  L  S  T  W  F  L  V  I  L  V  L  L  F  Y  C  N  F  D  E  N  S  G  Y  *  M  V  L  C  L  R  L  V  I  C  *  Y  I  A  T  F  Q  *  L  C  F  Y  L  D  F  C  T  F  L  F  L  C :   N  I  *  *  N  *  K  M :   *  L  Q  L  M  G  A </second_frame>
            <third_frame>   L  L  S  S  S  S  P  K  P  *  P  Q  S  L  P  *  E  L  R  S  Q  F  I  L  E  A  M  :  A  E  V  E  A  D  V  A  T  G  Q  P  R  K  R  T  F  K  K  F  S  Y  R  G  V  D  L  D  S  L  L  D  M  S  T  D  E  L  V  K  L  Y  P  A  R  P  R  R  R :   F  Q  R  G  L  K  R  K  P  M  A  L  I  K  K  L  R  K  A  :  K  R  E  A  P  P  G  E  K  P  E  V  V  R  T  H  L  R  N  M  I  I  V  P  E  M  I  G  S  V  I  G  I  Y  N  G  K  T  F  N  Q  I  E  V  K  P  E  M  I  S  H  Y  L  A  E  F  S  I  S  Y  K  P  V  K  H  G  R  P  G  I  G  A  T  H  S  S  R  F  I  P  L  K  *  F  I  Q  I  C  L  H  G  F  *  *  Y  *  Y  F  C  F  T  A  I  L  M  R  T  V  D  T  E  W  F  F  V  *  D  *  *  F  A  D  T  L  Q  H  F  N  D  C  A  S  I  *  I  F  V  P  F  C  F  S   : A  T  F  S  E  I  R  K   : C  D  S  S  *  W  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71296" stop="71264"/>
                    <exon start="71162" stop="71017"/>
                    <exon start="70524" stop="70467"/>
                    <exon start="69336" stop="69088"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELRSQFILEAMAEVEADVATGQPRKRTFKKFSYRGVDLDSLLDMSTDELVKLYPARPRRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEVVRTHLRNMIIVPEMIGSVIGIYNGKTFNQIEVKPEMISHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="71346" e_stop="71264"/>
            <exon e_start="71162" e_stop="71017"/>
            <exon e_start="70524" e_stop="70467"/>
            <exon e_start="69336" e_stop="68935"/>
            <exon e_start="67751" e_stop="67730"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71346" e_stop="71264" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71162" e_stop="71017" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70524" e_stop="70467" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69336" e_stop="68935" e_length="402"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.958">
            <gDNA_intron_boundary i_start="68934" i_stop="67752" i_length="1183"/>
          </intron>
          <exon e_serial="5" e_score="0.500">
            <gDNA_exon_boundary e_start="67751" e_stop="67730" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71346" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71341" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71333" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279058" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71332" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71330" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71327" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71323" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71323" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71323" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71323" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71323" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71322" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71322" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71321" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71321" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71321" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71321" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71319" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68935"/>
              <exon start="67751" stop="67730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340632" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71318" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71318" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71318" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71315" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71315" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71314" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71313" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71313" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71313" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71311" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71311" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71308" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71308" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71306" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71306" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71305" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71305" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71304" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71304" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71303" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577608" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71285" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71285" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71279" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71276" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71265" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71160" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71159" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71106" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71100" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71100" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71091" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265353" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71089" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340638" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71067" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71067" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71054" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71052" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70507" stop="70467"/>
              <exon start="69336" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70501" stop="70467"/>
              <exon start="69336" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70488" stop="70467"/>
              <exon start="69336" stop="68954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283531" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70488" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69325" stop="68969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69324" stop="68948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69319" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69304" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69304" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69300" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69293" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69286" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69283" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69282" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69282" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69279" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69248" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224446" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTCCTTTCATCGTCGTCCCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG : GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG : GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG : AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAG : CGGTAAAAAACAGAGAGATCAG</gDNA_template>
            <first_frame> T  S  F  H  R  R  P  Q  N  P  S  R  S  H  F  H  R  S  L  E  A  N  S  F  S  K  P  W :   R  K  L  K  L  M  L  R  P  D  S  Q  G  R  E  H  S  R  S  S  A  T  E  E  *  I  W  I  L  F  L  T  C  L  L  M  S  L  L  S  F  T  L  L  V  L  A  E   : G  S  R  G  V  *  R  G  S  L  W  L  *  S  R  S  C  A  R  R :   N  V  R  P  H  L  V  R  S  Q  R  L  *  E  H  I  *  G  T  *  S  L  F  L  R  *  L  E  V  S  L  E  S  T  M  E  K  L  S  I  K  L  R  S  S  L  R  *  L  V  T  T  *  L  S  S  P  S  H  T  S  L  S  S  T  V  G  P  V  L  V  L  L  T  L  Q  G  S  F  H  *  S  D  S  S  K  S  V  Y  M  V  S  S  N  T  S  T  F  V  L  L  Q  F  *  *  E  Q  W  I  L  N  G  S  L  F  E  T  S  N  L  L  I  H  C  N  I  S  M  I  V  L  L  F  S :   G  K  K  Q  R  D  Q </first_frame>
            <second_frame>  P  P  F  I  V  V  P  K  T  L  A  A  V  T  S  I  G  A  *  K  P  I  H  S  R  S  H   : G  G  S  *  S  *  C  C  D  R  T  A  K  E  E  N  I  Q  E  V  Q  L  Q  R  S  R  S  G  F  S  S  *  H  V  Y  *  *  A  C  *  A  L  P  C  S  S  S  Q  K  :  V  P  E  G  F  E  E  E  A  Y  G  F  D  Q  E  A  A  Q  G   : E  T  *  G  P  T  W  *  E  A  R  G  C  E  N  T  F  E  E  H  D  H  C  S  *  D  D  W  K  C  H  W  N  L  Q  W  K  N  F  Q  S  N  *  G  Q  A  *  D  D  *  S  L  L  S  *  V  L  H  L  I  Q  A  C  Q  A  R  *  A  R  Y  W  C  Y  S  L  F  K  V  H  S  I  E  V  I  H  P  N  L  S  T  W  F  L  V  I  L  V  L  L  F  Y  C  N  F  D  E  N  S  G  Y  *  M  V  L  C  L  R  L  V  I  C  *  Y  I  A  T  F  Q  *  L  C  F  Y  L   : A  V  K  N  R  E  I   </second_frame>
            <third_frame>   L  L  S  S  S  S  P  K  P  *  P  Q  S  L  P  *  E  L  R  S  Q  F  I  L  E  A  M  :  A  E  V  E  A  D  V  A  T  G  Q  P  R  K  R  T  F  K  K  F  S  Y  R  G  V  D  L  D  S  L  L  D  M  S  T  D  E  L  V  K  L  Y  P  A  R  P  R  R  R :   F  Q  R  G  L  K  R  K  P  M  A  L  I  K  K  L  R  K  A  :  K  R  E  A  P  P  G  E  K  P  E  V  V  R  T  H  L  R  N  M  I  I  V  P  E  M  I  G  S  V  I  G  I  Y  N  G  K  T  F  N  Q  I  E  V  K  P  E  M  I  S  H  Y  L  A  E  F  S  I  S  Y  K  P  V  K  H  G  R  P  G  I  G  A  T  H  S  S  R  F  I  P  L  K  *  F  I  Q  I  C  L  H  G  F  *  *  Y  *  Y  F  C  F  T  A  I  L  M  R  T  V  D  T  E  W  F  F  V  *  D  *  *  F  A  D  T  L  Q  H  F  N  D  C  A  S  I  *  :  R  *  K  T  E  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71296" stop="71264"/>
                    <exon start="71162" stop="71017"/>
                    <exon start="70524" stop="70467"/>
                    <exon start="69336" stop="69088"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELRSQFILEAMAEVEADVATGQPRKRTFKKFSYRGVDLDSLLDMSTDELVKLYPARPRRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEVVRTHLRNMIIVPEMIGSVIGIYNGKTFNQIEVKPEMISHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="71341" e_stop="71264"/>
            <exon e_start="71162" e_stop="71017"/>
            <exon e_start="70524" e_stop="70467"/>
            <exon e_start="69336" e_stop="68949"/>
            <exon e_start="67751" e_stop="67735"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.562"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71341" e_stop="71264" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71162" e_stop="71017" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70524" e_stop="70467" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69336" e_stop="68949" e_length="388"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.958">
            <gDNA_intron_boundary i_start="68948" i_stop="67752" i_length="1197"/>
          </intron>
          <exon e_serial="5" e_score="0.562">
            <gDNA_exon_boundary e_start="67751" e_stop="67735" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71341" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71333" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279058" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71332" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71330" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71327" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71323" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71323" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71323" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71323" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71322" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71322" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71321" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71321" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71321" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71321" stop="71264"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71318" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71318" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71315" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71314" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71313" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71313" stop="71264"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71313" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71311" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71308" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71308" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71306" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71306" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71305" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71305" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71304" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71304" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71303" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577608" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71285" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71285" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71279" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71276" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71265" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71160" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68949"/>
              <exon start="67751" stop="67736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71160" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68949"/>
              <exon start="67751" stop="67736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71160" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71159" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68949"/>
              <exon start="67751" stop="67735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71159" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71091" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265353" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71067" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71067" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70488" stop="70467"/>
              <exon start="69336" stop="68954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283531" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70488" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69325" stop="68969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69319" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69304" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69293" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69286" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69283" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69282" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69279" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69248" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224446" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCATCGTCGTCCCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG : GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG : GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG : AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATT : CGGTAAAAAACAGAGAG</gDNA_template>
            <first_frame> L  S  S  S  S  P  K  P  *  P  Q  S  L  P  *  E  L  R  S  Q  F  I  L  E  A  M  :  A  E  V  E  A  D  V  A  T  G  Q  P  R  K  R  T  F  K  K  F  S  Y  R  G  V  D  L  D  S  L  L  D  M  S  T  D  E  L  V  K  L  Y  P  A  R  P  R  R  R :   F  Q  R  G  L  K  R  K  P  M  A  L  I  K  K  L  R  K  A  :  K  R  E  A  P  P  G  E  K  P  E  V  V  R  T  H  L  R  N  M  I  I  V  P  E  M  I  G  S  V  I  G  I  Y  N  G  K  T  F  N  Q  I  E  V  K  P  E  M  I  S  H  Y  L  A  E  F  S  I  S  Y  K  P  V  K  H  G  R  P  G  I  G  A  T  H  S  S  R  F  I  P  L  K  *  F  I  Q  I  C  L  H  G  F  *  *  Y  *  Y  F  C  F  T  A  I  L  M  R  T  V  D  T  E  W  F  F  V  *  D  *  *  F  A  D  T  L  Q  H  F  N  D   : S  V  K  N  R  E </first_frame>
            <second_frame>  F  H  R  R  P  Q  N  P  S  R  S  H  F  H  R  S  L  E  A  N  S  F  S  K  P  W :   R  K  L  K  L  M  L  R  P  D  S  Q  G  R  E  H  S  R  S  S  A  T  E  E  *  I  W  I  L  F  L  T  C  L  L  M  S  L  L  S  F  T  L  L  V  L  A  E   : G  S  R  G  V  *  R  G  S  L  W  L  *  S  R  S  C  A  R  R :   N  V  R  P  H  L  V  R  S  Q  R  L  *  E  H  I  *  G  T  *  S  L  F  L  R  *  L  E  V  S  L  E  S  T  M  E  K  L  S  I  K  L  R  S  S  L  R  *  L  V  T  T  *  L  S  S  P  S  H  T  S  L  S  S  T  V  G  P  V  L  V  L  L  T  L  Q  G  S  F  H  *  S  D  S  S  K  S  V  Y  M  V  S  S  N  T  S  T  F  V  L  L  Q  F  *  *  E  Q  W  I  L  N  G  S  L  F  E  T  S  N  L  L  I  H  C  N  I  S  M  I  :  R  *  K  T  E   </second_frame>
            <third_frame>   F  I  V  V  P  K  T  L  A  A  V  T  S  I  G  A  *  K  P  I  H  S  R  S  H   : G  G  S  *  S  *  C  C  D  R  T  A  K  E  E  N  I  Q  E  V  Q  L  Q  R  S  R  S  G  F  S  S  *  H  V  Y  *  *  A  C  *  A  L  P  C  S  S  S  Q  K  :  V  P  E  G  F  E  E  E  A  Y  G  F  D  Q  E  A  A  Q  G   : E  T  *  G  P  T  W  *  E  A  R  G  C  E  N  T  F  E  E  H  D  H  C  S  *  D  D  W  K  C  H  W  N  L  Q  W  K  N  F  Q  S  N  *  G  Q  A  *  D  D  *  S  L  L  S  *  V  L  H  L  I  Q  A  C  Q  A  R  *  A  R  Y  W  C  Y  S  L  F  K  V  H  S  I  E  V  I  H  P  N  L  S  T  W  F  L  V  I  L  V  L  L  F  Y  C  N  F  D  E  N  S  G  Y  *  M  V  L  C  L  R  L  V  I  C  *  Y  I  A  T  F  Q  *  F :   G  K  K  Q  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71296" stop="71264"/>
                    <exon start="71162" stop="71017"/>
                    <exon start="70524" stop="70467"/>
                    <exon start="69336" stop="69088"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELRSQFILEAMAEVEADVATGQPRKRTFKKFSYRGVDLDSLLDMSTDELVKLYPARPRRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEVVRTHLRNMIIVPEMIGSVIGIYNGKTFNQIEVKPEMISHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="71341" e_stop="71264"/>
            <exon e_start="71162" e_stop="71017"/>
            <exon e_start="70524" e_stop="70467"/>
            <exon e_start="69336" e_stop="68949"/>
            <exon e_start="68372" e_stop="68341"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.594"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71341" e_stop="71264" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71162" e_stop="71017" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70524" e_stop="70467" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69336" e_stop="68949" e_length="388"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68948" i_stop="68373" i_length="576"/>
          </intron>
          <exon e_serial="5" e_score="0.594">
            <gDNA_exon_boundary e_start="68372" e_stop="68341" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71341" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71333" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279058" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71332" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71330" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71327" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
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            <referenceDNA id="SGN-E224446" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCATCGTCGTCCCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG : GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG : GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG : AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATT : GAACAGAAAACGAAACTCAACCATTGTTAAAA</gDNA_template>
            <first_frame> L  S  S  S  S  P  K  P  *  P  Q  S  L  P  *  E  L  R  S  Q  F  I  L  E  A  M  :  A  E  V  E  A  D  V  A  T  G  Q  P  R  K  R  T  F  K  K  F  S  Y  R  G  V  D  L  D  S  L  L  D  M  S  T  D  E  L  V  K  L  Y  P  A  R  P  R  R  R :   F  Q  R  G  L  K  R  K  P  M  A  L  I  K  K  L  R  K  A  :  K  R  E  A  P  P  G  E  K  P  E  V  V  R  T  H  L  R  N  M  I  I  V  P  E  M  I  G  S  V  I  G  I  Y  N  G  K  T  F  N  Q  I  E  V  K  P  E  M  I  S  H  Y  L  A  E  F  S  I  S  Y  K  P  V  K  H  G  R  P  G  I  G  A  T  H  S  S  R  F  I  P  L  K  *  F  I  Q  I  C  L  H  G  F  *  *  Y  *  Y  F  C  F  T  A  I  L  M  R  T  V  D  T  E  W  F  F  V  *  D  *  *  F  A  D  T  L  Q  H  F  N  D   : *  T  E  N  E  T  Q  P  L  L  K </first_frame>
            <second_frame>  F  H  R  R  P  Q  N  P  S  R  S  H  F  H  R  S  L  E  A  N  S  F  S  K  P  W :   R  K  L  K  L  M  L  R  P  D  S  Q  G  R  E  H  S  R  S  S  A  T  E  E  *  I  W  I  L  F  L  T  C  L  L  M  S  L  L  S  F  T  L  L  V  L  A  E   : G  S  R  G  V  *  R  G  S  L  W  L  *  S  R  S  C  A  R  R :   N  V  R  P  H  L  V  R  S  Q  R  L  *  E  H  I  *  G  T  *  S  L  F  L  R  *  L  E  V  S  L  E  S  T  M  E  K  L  S  I  K  L  R  S  S  L  R  *  L  V  T  T  *  L  S  S  P  S  H  T  S  L  S  S  T  V  G  P  V  L  V  L  L  T  L  Q  G  S  F  H  *  S  D  S  S  K  S  V  Y  M  V  S  S  N  T  S  T  F  V  L  L  Q  F  *  *  E  Q  W  I  L  N  G  S  L  F  E  T  S  N  L  L  I  H  C  N  I  S  M  I  :  E  Q  K  T  K  L  N  H  C  *   </second_frame>
            <third_frame>   F  I  V  V  P  K  T  L  A  A  V  T  S  I  G  A  *  K  P  I  H  S  R  S  H   : G  G  S  *  S  *  C  C  D  R  T  A  K  E  E  N  I  Q  E  V  Q  L  Q  R  S  R  S  G  F  S  S  *  H  V  Y  *  *  A  C  *  A  L  P  C  S  S  S  Q  K  :  V  P  E  G  F  E  E  E  A  Y  G  F  D  Q  E  A  A  Q  G   : E  T  *  G  P  T  W  *  E  A  R  G  C  E  N  T  F  E  E  H  D  H  C  S  *  D  D  W  K  C  H  W  N  L  Q  W  K  N  F  Q  S  N  *  G  Q  A  *  D  D  *  S  L  L  S  *  V  L  H  L  I  Q  A  C  Q  A  R  *  A  R  Y  W  C  Y  S  L  F  K  V  H  S  I  E  V  I  H  P  N  L  S  T  W  F  L  V  I  L  V  L  L  F  Y  C  N  F  D  E  N  S  G  Y  *  M  V  L  C  L  R  L  V  I  C  *  Y  I  A  T  F  Q  *  L :   N  R  K  R  N  S  T  I  V  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71296" stop="71264"/>
                    <exon start="71162" stop="71017"/>
                    <exon start="70524" stop="70467"/>
                    <exon start="69336" stop="69088"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELRSQFILEAMAEVEADVATGQPRKRTFKKFSYRGVDLDSLLDMSTDELVKLYPARPRRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEVVRTHLRNMIIVPEMIGSVIGIYNGKTFNQIEVKPEMISHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="71341" e_stop="71264"/>
            <exon e_start="71162" e_stop="71017"/>
            <exon e_start="70524" e_stop="70467"/>
            <exon e_start="69336" e_stop="68955"/>
            <exon e_start="67751" e_stop="67731"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.524"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71341" e_stop="71264" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71162" e_stop="71017" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70524" e_stop="70467" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69336" e_stop="68955" e_length="382"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.958">
            <gDNA_intron_boundary i_start="68954" i_stop="67752" i_length="1203"/>
          </intron>
          <exon e_serial="5" e_score="0.524">
            <gDNA_exon_boundary e_start="67751" e_stop="67731" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71341" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71333" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279058" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71332" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71330" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71325" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71323" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71323" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71323" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71323" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71322" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71322" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71321" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71321" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71321" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71318" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71318" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71314" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71313" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71313" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71313" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71311" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71308" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71308" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71306" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71306" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71305" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71305" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71304" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71303" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577608" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71285" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71285" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71279" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71276" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71265" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71160" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="69181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71159" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
              <exon start="67751" stop="67731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71159" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71067" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70488" stop="70467"/>
              <exon start="69336" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69325" stop="68969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69319" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69293" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69286" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69282" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69279" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229896" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCATCGTCGTCCCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG : GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG : GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG : AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCA : CGGTAAAAAACAGAGAGATCA</gDNA_template>
            <first_frame> L  S  S  S  S  P  K  P  *  P  Q  S  L  P  *  E  L  R  S  Q  F  I  L  E  A  M  :  A  E  V  E  A  D  V  A  T  G  Q  P  R  K  R  T  F  K  K  F  S  Y  R  G  V  D  L  D  S  L  L  D  M  S  T  D  E  L  V  K  L  Y  P  A  R  P  R  R  R :   F  Q  R  G  L  K  R  K  P  M  A  L  I  K  K  L  R  K  A  :  K  R  E  A  P  P  G  E  K  P  E  V  V  R  T  H  L  R  N  M  I  I  V  P  E  M  I  G  S  V  I  G  I  Y  N  G  K  T  F  N  Q  I  E  V  K  P  E  M  I  S  H  Y  L  A  E  F  S  I  S  Y  K  P  V  K  H  G  R  P  G  I  G  A  T  H  S  S  R  F  I  P  L  K  *  F  I  Q  I  C  L  H  G  F  *  *  Y  *  Y  F  C  F  T  A  I  L  M  R  T  V  D  T  E  W  F  F  V  *  D  *  *  F  A  D  T  L  Q  H  F   : T  V  K  N  R  E  I  </first_frame>
            <second_frame>  F  H  R  R  P  Q  N  P  S  R  S  H  F  H  R  S  L  E  A  N  S  F  S  K  P  W :   R  K  L  K  L  M  L  R  P  D  S  Q  G  R  E  H  S  R  S  S  A  T  E  E  *  I  W  I  L  F  L  T  C  L  L  M  S  L  L  S  F  T  L  L  V  L  A  E   : G  S  R  G  V  *  R  G  S  L  W  L  *  S  R  S  C  A  R  R :   N  V  R  P  H  L  V  R  S  Q  R  L  *  E  H  I  *  G  T  *  S  L  F  L  R  *  L  E  V  S  L  E  S  T  M  E  K  L  S  I  K  L  R  S  S  L  R  *  L  V  T  T  *  L  S  S  P  S  H  T  S  L  S  S  T  V  G  P  V  L  V  L  L  T  L  Q  G  S  F  H  *  S  D  S  S  K  S  V  Y  M  V  S  S  N  T  S  T  F  V  L  L  Q  F  *  *  E  Q  W  I  L  N  G  S  L  F  E  T  S  N  L  L  I  H  C  N  I  S  :  R  *  K  T  E  R  S </second_frame>
            <third_frame>   F  I  V  V  P  K  T  L  A  A  V  T  S  I  G  A  *  K  P  I  H  S  R  S  H   : G  G  S  *  S  *  C  C  D  R  T  A  K  E  E  N  I  Q  E  V  Q  L  Q  R  S  R  S  G  F  S  S  *  H  V  Y  *  *  A  C  *  A  L  P  C  S  S  S  Q  K  :  V  P  E  G  F  E  E  E  A  Y  G  F  D  Q  E  A  A  Q  G   : E  T  *  G  P  T  W  *  E  A  R  G  C  E  N  T  F  E  E  H  D  H  C  S  *  D  D  W  K  C  H  W  N  L  Q  W  K  N  F  Q  S  N  *  G  Q  A  *  D  D  *  S  L  L  S  *  V  L  H  L  I  Q  A  C  Q  A  R  *  A  R  Y  W  C  Y  S  L  F  K  V  H  S  I  E  V  I  H  P  N  L  S  T  W  F  L  V  I  L  V  L  L  F  Y  C  N  F  D  E  N  S  G  Y  *  M  V  L  C  L  R  L  V  I  C  *  Y  I  A  T  F  H :   G  K  K  Q  R  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71296" stop="71264"/>
                    <exon start="71162" stop="71017"/>
                    <exon start="70524" stop="70467"/>
                    <exon start="69336" stop="69088"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELRSQFILEAMAEVEADVATGQPRKRTFKKFSYRGVDLDSLLDMSTDELVKLYPARPRRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEVVRTHLRNMIIVPEMIGSVIGIYNGKTFNQIEVKPEMISHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="71324" e_stop="71264"/>
            <exon e_start="71162" e_stop="71017"/>
            <exon e_start="70524" e_stop="68808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71324" e_stop="71264" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71162" e_stop="71017" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70524" e_stop="68808" e_length="1717"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71324" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71161" stop="71017"/>
              <exon start="70524" stop="69924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71160" stop="71017"/>
              <exon start="70524" stop="70092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70199" stop="69633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70026" stop="69517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70026" stop="69518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69724" stop="68961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69343" stop="68908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69325" stop="68969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69324" stop="68948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69319" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69304" stop="68905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69304" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69304" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69300" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69293" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69286" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69284" stop="68908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69283" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69282" stop="68808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69282" stop="68905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69282" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69282" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69280" stop="68908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69279" stop="68955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69248" stop="68908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69248" stop="68952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224446" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG : GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG : GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTGAATATTCTGTTCTGTTTAAAAACTACTAACCTTTTGTGTTAGCGAATTTAGTTTTAGAGGTAATTTGGGATAAAAACGTGT</gDNA_template>
            <first_frame> K  T  L  A  A  V  T  S  I  G  A  *  K  P  I  H  S  R  S  H   : G  G  S  *  S  *  C  C  D  R  T  A  K  E  E  N  I  Q  E  V  Q  L  Q  R  S  R  S  G  F  S  S  *  H  V  Y  *  *  A  C  *  A  L  P  C  S  S  S  Q  K  :  V  P  E  G  F  E  E  E  A  Y  G  F  D  Q  E  A  A  Q  G  G  K  I  T  N  L  L  L  A  S  L  L  K  I  N  G  L  F  G  V  K  Y  Q  P  F  Y  G  R  E  T  *  N  R  Y  V  R  G  C  G  M  I  T  C  L  C  F  L  *  P  Q  L  Y  P  A  H  L  A  F  V  Y  *  F  S  E  N  S  I  S  V  T  A  M  L  *  *  I  *  I  M  S  Q  K  T  A  A  M  *  S  C  I  F  S  T  S  E  C  F  F  S  K  L  V  N  A  T  I  Y  *  A  W  T  I  *  F  T  C  I  F  V  D  Y  P  *  S  P  I  V  L  S  S  C  R  I  V  Y  Y  F  N  P  Q  I  F  A  C  S  T  K  S  Y  *  V  K  L  K  F  V  *  Y  T  K  R  N  N  I  S  I  M  N  L  L  D  V  F  L  G  S  *  S  *  T  T  *  R  C  L  E  L  G  A  *  G  R  A  L  P  S  L  I  K  R  W  R  G  I  P  Q  S  E  V  F  I  C  G  A  L  S  A  *  A  H  N  N  V  L  G  S  P  W  L  L  W  V  H  Q  P  A  S  K  V  S  G  L  P  Y  I  F  N  L  P  V  A  L  S  F  F  C  H  *  N  F  Y  L  F  C  Y  I  L  L  L  D  L  C  G  S  I  V  S  F  L  V  H  N  S  L  C  E  L  V  Y  C  D  G  E  I  L  L  L  *  F  F  G  K  E  E  R  P  S  D  V  Q  I  I  *  S  E  C  H  F  P  H  A  T  T  S  P  Y  R  N  K  Q  D  L  M  L  A  P  S  V  S  W  F  A  S  L  A  S  L  *  H  R  K  H  H  Y  M  F  Y  I  I  T  N  F  L  Y  M  Y  V  F  P  L  M  F  F  I  F  K  Q  K  R  E  A  P  P  G  E  K  P  E  V  V  R  T  H  L  R  N  M  I  I  V  P  E  M  I  G  S  V  I  G  I  Y  N  G  K  T  F  N  Q  I  E  V  K  P  E  M  I  S  H  Y  L  A  E  F  S  I  S  Y  K  P  V  K  H  G  R  P  G  I  G  A  T  H  S  S  R  F  I  P  L  K  *  F  I  Q  I  C  L  H  G  F  *  *  Y  *  Y  F  C  F  T  A  I  L  M  R  T  V  D  T  E  W  F  F  V  *  D  *  *  F  A  D  T  L  Q  H  F  N  D  C  A  S  I  *  I  F  V  P  F  C  F  S  E  I  G  Y  F  V  S  E  Y  S  V  L  F  K  N  Y  *  P  F  V  L  A  N  L  V  L  E  V  I  W  D  K  N  V  </first_frame>
            <second_frame>  K  P  *  P  Q  S  L  P  *  E  L  R  S  Q  F  I  L  E  A  M  :  A  E  V  E  A  D  V  A  T  G  Q  P  R  K  R  T  F  K  K  F  S  Y  R  G  V  D  L  D  S  L  L  D  M  S  T  D  E  L  V  K  L  Y  P  A  R  P  R  R  R :   F  Q  R  G  L  K  R  K  P  M  A  L  I  K  K  L  R  K  A  V  R  L  L  T  S  F  *  L  L  F  *  K  *  M  V  Y  L  V  L  N  I  S  H  F  M  V  E  K  L  E  I  D  M  L  G  V  V  E  *  L  H  V  F  A  F  C  S  L  S  Y  I  Q  H  T  L  H  L  S  I  N  L  V  R  T  L  L  V  *  L  Q  C  Y  S  E  F  R  S  *  V  K  R  L  L  R  C  E  A  A  F  L  V  H  L  N  A  F  S  R  S  *  *  M  Q  P  F  T  E  H  G  Q  S  S  L  P  V  S  L  L  I  I  H  D  H  L  L  F  F  L  V  A  E  L  Y  I  I  S  T  P  R  F  L  H  V  R  Q  S  H  I  R  *  S  *  N  S  F  D  I  Q  K  E  T  I  *  V  *  *  I  F  *  M  C  F  W  V  L  S  L  K  R  L  R  D  V  *  N  *  A  P  K  A  E  R  F  P  R  *  L  R  G  G  V  V  F  H  R  V  R  F  L  F  V  A  H  *  V  R  R  R  T  I  M  F  W  G  L  H  G  C  F  G  C  I  N  L  L  P  R  C  R  D  C  P  I  F  S  I  S  Q  S  L  C  L  S  S  A  T  R  I  S  T  C  F  V  T  F  F  C  W  I  Y  V  A  V  L  F  L  F  L  Y  I  I  V  Y  V  N  *  F  I  V  M  V  K  F  Y  Y  Y  S  F  L  G  R  R  K  G  L  L  M  F  K  S  Y  N  Q  N  A  T  F  L  M  Q  L  P  L  P  T  E  I  N  R  I  *  C  L  H  P  V  F  H  G  L  Q  V  W  L  R  C  N  I  V  N  I  I  I  C  F  I  L  L  P  I  F  C  I  C  M  S  F  H  *  C  F  S  Y  S  N  R  N  V  R  P  H  L  V  R  S  Q  R  L  *  E  H  I  *  G  T  *  S  L  F  L  R  *  L  E  V  S  L  E  S  T  M  E  K  L  S  I  K  L  R  S  S  L  R  *  L  V  T  T  *  L  S  S  P  S  H  T  S  L  S  S  T  V  G  P  V  L  V  L  L  T  L  Q  G  S  F  H  *  S  D  S  S  K  S  V  Y  M  V  S  S  N  T  S  T  F  V  L  L  Q  F  *  *  E  Q  W  I  L  N  G  S  L  F  E  T  S  N  L  L  I  H  C  N  I  S  M  I  V  L  L  F  R  F  L  Y  L  F  V  S  L  K  L  V  T  L  C  L  N  I  L  F  C  L  K  T  T  N  L  L  C  *  R  I  *  F  *  R  *  F  G  I  K  T  C </second_frame>
            <third_frame>   N  P  S  R  S  H  F  H  R  S  L  E  A  N  S  F  S  K  P  W :   R  K  L  K  L  M  L  R  P  D  S  Q  G  R  E  H  S  R  S  S  A  T  E  E  *  I  W  I  L  F  L  T  C  L  L  M  S  L  L  S  F  T  L  L  V  L  A  E   : G  S  R  G  V  *  R  G  S  L  W  L  *  S  R  S  C  A  R  R  *  D  Y  *  P  P  F  S  F  S  F  K  N  K  W  F  I  W  C  *  I  S  A  I  L  W  *  R  N  L  K  *  I  C  *  G  L  W  N  D  Y  M  S  L  L  F  V  A  S  V  I  S  S  T  P  C  I  C  L  L  I  *  *  E  L  Y  *  C  N  C  N  A  I  V  N  L  D  H  E  S  K  D  C  C  D  V  K  L  H  F  *  Y  I  *  M  L  F  L  E  V  S  E  C  N  H  L  L  S  M  D  N  L  V  Y  L  Y  L  C  *  L  S  M  I  T  Y  C  S  F  *  L  Q  N  C  I  L  F  Q  P  P  D  F  C  M  F  D  K  V  I  L  G  E  A  E  I  R  L  I  Y  K  K  K  Q  Y  K  Y  N  E  S  F  R  C  V  S  G  F  L  V  L  N  D  L  E  M  F  R  I  R  R  L  R  P  S  A  S  L  V  N  *  E  V  A  W  Y  S  T  E  *  G  F  Y  L  W  R  T  K  C  V  G  A  Q  *  C  F  G  V  S  M  A  A  L  G  A  S  T  C  F  Q  G  V  G  I  A  L  Y  F  Q  S  P  S  R  F  V  F  L  L  P  L  E  F  L  L  V  L  L  H  S  F  A  G  F  M  W  Q  Y  C  F  F  S  C  T  *  *  S  M  *  T  S  L  L  *  W  *  N  F  T  T  I  V  F  W  E  G  G  K  A  F  *  C  S  N  H  I  I  R  M  P  L  S  S  C  N  Y  L  S  L  Q  K  *  T  G  F  N  A  C  T  Q  C  F  M  V  C  K  F  G  F  A  V  T  S  *  T  S  L  Y  V  L  Y  Y  Y  Q  F  F  V  Y  V  C  L  S  I  D  V  F  H  I  Q  T  E  T  *  G  P  T  W  *  E  A  R  G  C  E  N  T  F  E  E  H  D  H  C  S  *  D  D  W  K  C  H  W  N  L  Q  W  K  N  F  Q  S  N  *  G  Q  A  *  D  D  *  S  L  L  S  *  V  L  H  L  I  Q  A  C  Q  A  R  *  A  R  Y  W  C  Y  S  L  F  K  V  H  S  I  E  V  I  H  P  N  L  S  T  W  F  L  V  I  L  V  L  L  F  Y  C  N  F  D  E  N  S  G  Y  *  M  V  L  C  L  R  L  V  I  C  *  Y  I  A  T  F  Q  *  L  C  F  Y  L  D  F  C  T  F  L  F  L  *  N  W  L  L  C  V  *  I  F  C  S  V  *  K  L  L  T  F  C  V  S  E  F  S  F  R  G  N  L  G  *  K  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69423" stop="69088"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HRKHHYMFYIITNFLYMYVFPLMFFIFKQKREAPPGEKPEVVRTHLRNMIIVPEMIGSVIGIYNGKTFNQIEVKPEMISHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="7" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71296" stop="71264"/>
                    <exon start="71162" stop="71017"/>
                    <exon start="70524" stop="70443"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELRSQFILEAMAEVEADVATGQPRKRTFKKFSYRGVDLDSLLDMSTDELVKLYPARPRRRFQRGLKRKPMALIKKLRKAVRLLTSF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="7" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69821" stop="69606"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRRRTIMFWGLHGCFGCINLLPRCRDCPIFSISQSLCLSSATRISTCFVTFFCWIYVAVLFLFLYIIVYVN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="7" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70078" stop="69872"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQNCILFQPPDFCMFDKVILGEAEIRLIYKKKQYKYNESFRCVSGFLVLNDLEMFRIRRLRPSASLVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="68405" PGL_stop="69183"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68405" e_stop="68432"/>
            <exon e_start="68900" e_stop="69183"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="0.464"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.464">
            <gDNA_exon_boundary e_start="68405" e_stop="68432" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68433" i_stop="68899" i_length="467"/>
          </intron>
          <exon e_serial="2" e_score="0.954">
            <gDNA_exon_boundary e_start="68900" e_stop="69183" e_length="284"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68405" stop="68432"/>
              <exon start="68900" stop="69183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239147" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTGGTTTTACTTTTGAAGCTCAAAGA : TAACCAATTTCAGAGAAACAAAAAGGTACAAAAATCTAAATAGAAGCACAATCATTGAAATGTTGCAATGTATCAGCAAATTACTAGTCTCAAACAAAGAACCATTCAGTATCCACTGTTCTCATCAAAATTGCAGTAAAACAAAAGTACTAGTATTACTAGAAACCATGTAGACAGATTTGGATGAATCACTTCAATGGAATGAACCTTGAAGAGTGAGTAGCACCAATACCGGGCCTACCGTGCTTGACAGGCTTGTATGAGATGGAGAACTCAGCTAAGTA</gDNA_template>
            <first_frame> V  W  F  Y  F  *  S  S  K   : I  T  N  F  R  E  T  K  R  Y  K  N  L  N  R  S  T  I  I  E  M  L  Q  C  I  S  K  L  L  V  S  N  K  E  P  F  S  I  H  C  S  H  Q  N  C  S  K  T  K  V  L  V  L  L  E  T  M  *  T  D  L  D  E  S  L  Q  W  N  E  P  *  R  V  S  S  T  N  T  G  P  T  V  L  D  R  L  V  *  D  G  E  L  S  *  V </first_frame>
            <second_frame>  F  G  F  T  F  E  A  Q  R  :  *  P  I  S  E  K  Q  K  G  T  K  I  *  I  E  A  Q  S  L  K  C  C  N  V  S  A  N  Y  *  S  Q  T  K  N  H  S  V  S  T  V  L  I  K  I  A  V  K  Q  K  Y  *  Y  Y  *  K  P  C  R  Q  I  W  M  N  H  F  N  G  M  N  L  E  E  *  V  A  P  I  P  G  L  P  C  L  T  G  L  Y  E  M  E  N  S  A  K   </second_frame>
            <third_frame>   L  V  L  L  L  K  L  K  D :   N  Q  F  Q  R  N  K  K  V  Q  K  S  K  *  K  H  N  H  *  N  V  A  M  Y  Q  Q  I  T  S  L  K  Q  R  T  I  Q  Y  P  L  F  S  S  K  L  Q  *  N  K  S  T  S  I  T  R  N  H  V  D  R  F  G  *  I  T  S  M  E  *  T  L  K  S  E  *  H  Q  Y  R  A  Y  R  A  *  Q  A  C  M  R  W  R  T  Q  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0020N15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="73064" PGL_stop="78089"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73064" e_stop="73104"/>
            <exon e_start="76591" e_stop="77983"/>
            <exon e_start="78075" e_stop="78089"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.446" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73064" e_stop="73104" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.913">
            <gDNA_intron_boundary i_start="73105" i_stop="76590" i_length="3486"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76591" e_stop="77983" e_length="1393"/>
          </exon>
          <intron i_serial="2" don_prob="0.446" acc_prob="0.950">
            <gDNA_intron_boundary i_start="77984" i_stop="78074" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="0.600">
            <gDNA_exon_boundary e_start="78075" e_stop="78089" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73064" stop="73104"/>
              <exon start="76591" stop="77304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73065" stop="73104"/>
              <exon start="76591" stop="77165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77183" stop="77983"/>
              <exon start="78075" stop="78089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTGCTTCGCCATTTTCACTGGAGCTGTTCCTATTGTTAG : GCTTATAATTTGTGTCCCTTGAGGCATGATCTTGGCATTGACACATCTCTTTCGTAGGGCTCCCTTTTTTTAAAATGCTTCAATCTCTCTATAAATGTCAAAGAAACTTGTGTACAAAGATCAGGACAACCAGCCTTCTCGTGCAGTTTGTGTCAACTAGCTGTGGCAGCAACATCCCAACTGATGAGAGCACACTCGTTGATTTGTATCACAGAAAGACACATGGTTTATCAAAAGAAAACGTCATTAGTGAAGCAGAACCACTCCAATTAGATACTGCTCAATGTTCAAAAGTTTCAGCTTTTGTTGAGTTCTTCCAAAACCATGGGTTTTCTGCAACCCAAACGAAGAGACTAATTAGACTACGCCCTAAATTACTAGTATCGAAGGTGGACAAAACCCTAAAGCCCAAGTTGAAGTTCTTGCAATCAATTGGCTTTACTGAAGATGAACGCAATAAGATTATCTGTGGTAACCCCAACATACTCATGAGTAGCGTAGAGAAACAACTGACTCCATGCTTTGATTCCCTAAAGATGTTCATGGGTAGTGAAATGCAAGCAATGGCTGCCATCAAACGAAGTCCGCAGATCTTTAATTATAAATTCTCTGATGGTTTGGAGCAGACTCTACAGGTATTGCACCAACTTGGTATTCCTGATTCTGAAGCTTCAGAGTTTATTTCAAAAGTTCCCATTATCTTGACTATAAATCCCAAAAAGATGAGTAAGGTTGGCTTGAGACTTAAGGAATTGGGGTTTGATGTTACTTCTTCAGCATTTAGGGCAGCTTTTACCGCAATGTCTGTACTTAGTGATTCCAAAATGGAAAAGAAACTGGAAAACTACCGAAGTATGGGCTTTTCAGATGGCGAGATCCGCAATATATTCAGATTGCAGCCAACTTGCATGTTTTATTCTGAGGATAATATCAGGGCAATTGTGGCATTCTATGTTAATAAACTCCATTTGAGCCTATCACACTTGTCACAAAGACCATCCTTTCTATTGCGTAGCCTGAAGAAGAGGGTTATTCCCAGGTGTTCTGTCATGCAAGTTTTGTGGTCAACAGGCGTTATTTCAAAAGTTAACAAACTATCCTCAATTCTAATGATTAGTGAAAAGGACTTCTTACGGAAGTGTGTTACTAAATATGAAGCACAAGTTCCTCAACTGCTAGCTGCCTACCGTGGTGAACTTGTGTTCAACGAATACACTTTTCATTTACGTGAAATTCATCAGATTTCAGTGTCAAAGGCATCATCTTCTAAAGCTACGTAGCTTAGTAGTATTTGCACCATCTGTATCTTTCACTGCACCATTTACTGTCGCATTCATGTTATCAACATTGTTTCCCATATTTAAGTTGAACTACTGCCGTTCTGTTCGTAGAG : GGCAAAACTAGAGAA</gDNA_template>
            <first_frame> H  C  F  A  I  F  T  G  A  V  P  I  V  R :   L  I  I  C  V  P  *  G  M  I  L  A  L  T  H  L  F  R  R  A  P  F  F  *  N  A  S  I  S  L  *  M  S  K  K  L  V  Y  K  D  Q  D  N  Q  P  S  R  A  V  C  V  N  *  L  W  Q  Q  H  P  N  *  *  E  H  T  R  *  F  V  S  Q  K  D  T  W  F  I  K  R  K  R  H  *  *  S  R  T  T  P  I  R  Y  C  S  M  F  K  S  F  S  F  C  *  V  L  P  K  P  W  V  F  C  N  P  N  E  E  T  N  *  T  T  P  *  I  T  S  I  E  G  G  Q  N  P  K  A  Q  V  E  V  L  A  I  N  W  L  Y  *  R  *  T  Q  *  D  Y  L  W  *  P  Q  H  T  H  E  *  R  R  E  T  T  D  S  M  L  *  F  P  K  D  V  H  G  *  *  N  A  S  N  G  C  H  Q  T  K  S  A  D  L  *  L  *  I  L  *  W  F  G  A  D  S  T  G  I  A  P  T  W  Y  S  *  F  *  S  F  R  V  Y  F  K  S  S  H  Y  L  D  Y  K  S  Q  K  D  E  *  G  W  L  E  T  *  G  I  G  V  *  C  Y  F  F  S  I  *  G  S  F  Y  R  N  V  C  T  *  *  F  Q  N  G  K  E  T  G  K  L  P  K  Y  G  L  F  R  W  R  D  P  Q  Y  I  Q  I  A  A  N  L  H  V  L  F  *  G  *  Y  Q  G  N  C  G  I  L  C  *  *  T  P  F  E  P  I  T  L  V  T  K  T  I  L  S  I  A  *  P  E  E  E  G  Y  S  Q  V  F  C  H  A  S  F  V  V  N  R  R  Y  F  K  S  *  Q  T  I  L  N  S  N  D  *  *  K  G  L  L  T  E  V  C  Y  *  I  *  S  T  S  S  S  T  A  S  C  L  P  W  *  T  C  V  Q  R  I  H  F  S  F  T  *  N  S  S  D  F  S  V  K  G  I  I  F  *  S  Y  V  A  *  *  Y  L  H  H  L  Y  L  S  L  H  H  L  L  S  H  S  C  Y  Q  H  C  F  P  Y  L  S  *  T  T  A  V  L  F  V  E  :  G  K  T  R  E </first_frame>
            <second_frame>  T  A  S  P  F  S  L  E  L  F  L  L  L   : G  L  *  F  V  S  L  E  A  *  S  W  H  *  H  I  S  F  V  G  L  P  F  F  K  M  L  Q  S  L  Y  K  C  Q  R  N  L  C  T  K  I  R  T  T  S  L  L  V  Q  F  V  S  T  S  C  G  S  N  I  P  T  D  E  S  T  L  V  D  L  Y  H  R  K  T  H  G  L  S  K  E  N  V  I  S  E  A  E  P  L  Q  L  D  T  A  Q  C  S  K  V  S  A  F  V  E  F  F  Q  N  H  G  F  S  A  T  Q  T  K  R  L  I  R  L  R  P  K  L  L  V  S  K  V  D  K  T  L  K  P  K  L  K  F  L  Q  S  I  G  F  T  E  D  E  R  N  K  I  I  C  G  N  P  N  I  L  M  S  S  V  E  K  Q  L  T  P  C  F  D  S  L  K  M  F  M  G  S  E  M  Q  A  M  A  A  I  K  R  S  P  Q  I  F  N  Y  K  F  S  D  G  L  E  Q  T  L  Q  V  L  H  Q  L  G  I  P  D  S  E  A  S  E  F  I  S  K  V  P  I  I  L  T  I  N  P  K  K  M  S  K  V  G  L  R  L  K  E  L  G  F  D  V  T  S  S  A  F  R  A  A  F  T  A  M  S  V  L  S  D  S  K  M  E  K  K  L  E  N  Y  R  S  M  G  F  S  D  G  E  I  R  N  I  F  R  L  Q  P  T  C  M  F  Y  S  E  D  N  I  R  A  I  V  A  F  Y  V  N  K  L  H  L  S  L  S  H  L  S  Q  R  P  S  F  L  L  R  S  L  K  K  R  V  I  P  R  C  S  V  M  Q  V  L  W  S  T  G  V  I  S  K  V  N  K  L  S  S  I  L  M  I  S  E  K  D  F  L  R  K  C  V  T  K  Y  E  A  Q  V  P  Q  L  L  A  A  Y  R  G  E  L  V  F  N  E  Y  T  F  H  L  R  E  I  H  Q  I  S  V  S  K  A  S  S  S  K  A  T  *  L  S  S  I  C  T  I  C  I  F  H  C  T  I  Y  C  R  I  H  V  I  N  I  V  S  H  I  *  V  E  L  L  P  F  C  S  *  R :   A  K  L  E   </second_frame>
            <third_frame>   L  L  R  H  F  H  W  S  C  S  Y  C  *  :  A  Y  N  L  C  P  L  R  H  D  L  G  I  D  T  S  L  S  *  G  S  L  F  L  K  C  F  N  L  S  I  N  V  K  E  T  C  V  Q  R  S  G  Q  P  A  F  S  C  S  L  C  Q  L  A  V  A  A  T  S  Q  L  M  R  A  H  S  L  I  C  I  T  E  R  H  M  V  Y  Q  K  K  T  S  L  V  K  Q  N  H  S  N  *  I  L  L  N  V  Q  K  F  Q  L  L  L  S  S  S  K  T  M  G  F  L  Q  P  K  R  R  D  *  L  D  Y  A  L  N  Y  *  Y  R  R  W  T  K  P  *  S  P  S  *  S  S  C  N  Q  L  A  L  L  K  M  N  A  I  R  L  S  V  V  T  P  T  Y  S  *  V  A  *  R  N  N  *  L  H  A  L  I  P  *  R  C  S  W  V  V  K  C  K  Q  W  L  P  S  N  E  V  R  R  S  L  I  I  N  S  L  M  V  W  S  R  L  Y  R  Y  C  T  N  L  V  F  L  I  L  K  L  Q  S  L  F  Q  K  F  P  L  S  *  L  *  I  P  K  R  *  V  R  L  A  *  D  L  R  N  W  G  L  M  L  L  L  Q  H  L  G  Q  L  L  P  Q  C  L  Y  L  V  I  P  K  W  K  R  N  W  K  T  T  E  V  W  A  F  Q  M  A  R  S  A  I  Y  S  D  C  S  Q  L  A  C  F  I  L  R  I  I  S  G  Q  L  W  H  S  M  L  I  N  S  I  *  A  Y  H  T  C  H  K  D  H  P  F  Y  C  V  A  *  R  R  G  L  F  P  G  V  L  S  C  K  F  C  G  Q  Q  A  L  F  Q  K  L  T  N  Y  P  Q  F  *  *  L  V  K  R  T  S  Y  G  S  V  L  L  N  M  K  H  K  F  L  N  C  *  L  P  T  V  V  N  L  C  S  T  N  T  L  F  I  Y  V  K  F  I  R  F  Q  C  Q  R  H  H  L  L  K  L  R  S  L  V  V  F  A  P  S  V  S  F  T  A  P  F  T  V  A  F  M  L  S  T  L  F  P  I  F  K  L  N  Y  C  R  S  V  R  R   : G  Q  N  *  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76632" stop="77870"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1236</number_coding_nucleotides>
                  <number_encoded_amino_acids>412</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HISFVGLPFFKMLQSLYKCQRNLCTKIRTTSLLVQFVSTSCGSNIPTDESTLVDLYHRKTHGLSKENVISEAEPLQLDTAQCSKVSAFVEFFQNHGFSATQTKRLIRLRPKLLVSKVDKTLKPKLKFLQSIGFTEDERNKIICGNPNILMSSVEKQLTPCFDSLKMFMGSEMQAMAAIKRSPQIFNYKFSDGLEQTLQVLHQLGIPDSEASEFISKVPIILTINPKKMSKVGLRLKELGFDVTSSAFRAAFTAMSVLSDSKMEKKLENYRSMGFSDGEIRNIFRLQPTCMFYSEDNIRAIVAFYVNKLHLSLSHLSQRPSFLLRSLKKRVIPRCSVMQVLWSTGVISKVNKLSSILMISEKDFLRKCVTKYEAQVPQLLAAYRGELVFNEYTFHLREIHQISVSKASSSKAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="73064" e_stop="73104"/>
            <exon e_start="76591" e_stop="78031"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.913" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73064" e_stop="73104" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.913">
            <gDNA_intron_boundary i_start="73105" i_stop="76590" i_length="3486"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76591" e_stop="78031" e_length="1441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73064" stop="73104"/>
              <exon start="76591" stop="77304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73065" stop="73104"/>
              <exon start="76591" stop="77165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77277" stop="78031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544412" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTGCTTCGCCATTTTCACTGGAGCTGTTCCTATTGTTAG : GCTTATAATTTGTGTCCCTTGAGGCATGATCTTGGCATTGACACATCTCTTTCGTAGGGCTCCCTTTTTTTAAAATGCTTCAATCTCTCTATAAATGTCAAAGAAACTTGTGTACAAAGATCAGGACAACCAGCCTTCTCGTGCAGTTTGTGTCAACTAGCTGTGGCAGCAACATCCCAACTGATGAGAGCACACTCGTTGATTTGTATCACAGAAAGACACATGGTTTATCAAAAGAAAACGTCATTAGTGAAGCAGAACCACTCCAATTAGATACTGCTCAATGTTCAAAAGTTTCAGCTTTTGTTGAGTTCTTCCAAAACCATGGGTTTTCTGCAACCCAAACGAAGAGACTAATTAGACTACGCCCTAAATTACTAGTATCGAAGGTGGACAAAACCCTAAAGCCCAAGTTGAAGTTCTTGCAATCAATTGGCTTTACTGAAGATGAACGCAATAAGATTATCTGTGGTAACCCCAACATACTCATGAGTAGCGTAGAGAAACAACTGACTCCATGCTTTGATTCCCTAAAGATGTTCATGGGTAGTGAAATGCAAGCAATGGCTGCCATCAAACGAAGTCCGCAGATCTTTAATTATAAATTCTCTGATGGTTTGGAGCAGACTCTACAGGTATTGCACCAACTTGGTATTCCTGATTCTGAAGCTTCAGAGTTTATTTCAAAAGTTCCCATTATCTTGACTATAAATCCCAAAAAGATGAGTAAGGTTGGCTTGAGACTTAAGGAATTGGGGTTTGATGTTACTTCTTCAGCATTTAGGGCAGCTTTTACCGCAATGTCTGTACTTAGTGATTCCAAAATGGAAAAGAAACTGGAAAACTACCGAAGTATGGGCTTTTCAGATGGCGAGATCCGCAATATATTCAGATTGCAGCCAACTTGCATGTTTTATTCTGAGGATAATATCAGGGCAATTGTGGCATTCTATGTTAATAAACTCCATTTGAGCCTATCACACTTGTCACAAAGACCATCCTTTCTATTGCGTAGCCTGAAGAAGAGGGTTATTCCCAGGTGTTCTGTCATGCAAGTTTTGTGGTCAACAGGCGTTATTTCAAAAGTTAACAAACTATCCTCAATTCTAATGATTAGTGAAAAGGACTTCTTACGGAAGTGTGTTACTAAATATGAAGCACAAGTTCCTCAACTGCTAGCTGCCTACCGTGGTGAACTTGTGTTCAACGAATACACTTTTCATTTACGTGAAATTCATCAGATTTCAGTGTCAAAGGCATCATCTTCTAAAGCTACGTAGCTTAGTAGTATTTGCACCATCTGTATCTTTCACTGCACCATTTACTGTCGCATTCATGTTATCAACATTGTTTCCCATATTTAAGTTGAACTACTGCCGTTCTGTTCGTAGAGGTACTAGAATTCTTTACTGGTAAGCTTATGAAGGAAATAAATTTTCTG</gDNA_template>
            <first_frame> H  C  F  A  I  F  T  G  A  V  P  I  V  R :   L  I  I  C  V  P  *  G  M  I  L  A  L  T  H  L  F  R  R  A  P  F  F  *  N  A  S  I  S  L  *  M  S  K  K  L  V  Y  K  D  Q  D  N  Q  P  S  R  A  V  C  V  N  *  L  W  Q  Q  H  P  N  *  *  E  H  T  R  *  F  V  S  Q  K  D  T  W  F  I  K  R  K  R  H  *  *  S  R  T  T  P  I  R  Y  C  S  M  F  K  S  F  S  F  C  *  V  L  P  K  P  W  V  F  C  N  P  N  E  E  T  N  *  T  T  P  *  I  T  S  I  E  G  G  Q  N  P  K  A  Q  V  E  V  L  A  I  N  W  L  Y  *  R  *  T  Q  *  D  Y  L  W  *  P  Q  H  T  H  E  *  R  R  E  T  T  D  S  M  L  *  F  P  K  D  V  H  G  *  *  N  A  S  N  G  C  H  Q  T  K  S  A  D  L  *  L  *  I  L  *  W  F  G  A  D  S  T  G  I  A  P  T  W  Y  S  *  F  *  S  F  R  V  Y  F  K  S  S  H  Y  L  D  Y  K  S  Q  K  D  E  *  G  W  L  E  T  *  G  I  G  V  *  C  Y  F  F  S  I  *  G  S  F  Y  R  N  V  C  T  *  *  F  Q  N  G  K  E  T  G  K  L  P  K  Y  G  L  F  R  W  R  D  P  Q  Y  I  Q  I  A  A  N  L  H  V  L  F  *  G  *  Y  Q  G  N  C  G  I  L  C  *  *  T  P  F  E  P  I  T  L  V  T  K  T  I  L  S  I  A  *  P  E  E  E  G  Y  S  Q  V  F  C  H  A  S  F  V  V  N  R  R  Y  F  K  S  *  Q  T  I  L  N  S  N  D  *  *  K  G  L  L  T  E  V  C  Y  *  I  *  S  T  S  S  S  T  A  S  C  L  P  W  *  T  C  V  Q  R  I  H  F  S  F  T  *  N  S  S  D  F  S  V  K  G  I  I  F  *  S  Y  V  A  *  *  Y  L  H  H  L  Y  L  S  L  H  H  L  L  S  H  S  C  Y  Q  H  C  F  P  Y  L  S  *  T  T  A  V  L  F  V  E  V  L  E  F  F  T  G  K  L  M  K  E  I  N  F  L </first_frame>
            <second_frame>  T  A  S  P  F  S  L  E  L  F  L  L  L   : G  L  *  F  V  S  L  E  A  *  S  W  H  *  H  I  S  F  V  G  L  P  F  F  K  M  L  Q  S  L  Y  K  C  Q  R  N  L  C  T  K  I  R  T  T  S  L  L  V  Q  F  V  S  T  S  C  G  S  N  I  P  T  D  E  S  T  L  V  D  L  Y  H  R  K  T  H  G  L  S  K  E  N  V  I  S  E  A  E  P  L  Q  L  D  T  A  Q  C  S  K  V  S  A  F  V  E  F  F  Q  N  H  G  F  S  A  T  Q  T  K  R  L  I  R  L  R  P  K  L  L  V  S  K  V  D  K  T  L  K  P  K  L  K  F  L  Q  S  I  G  F  T  E  D  E  R  N  K  I  I  C  G  N  P  N  I  L  M  S  S  V  E  K  Q  L  T  P  C  F  D  S  L  K  M  F  M  G  S  E  M  Q  A  M  A  A  I  K  R  S  P  Q  I  F  N  Y  K  F  S  D  G  L  E  Q  T  L  Q  V  L  H  Q  L  G  I  P  D  S  E  A  S  E  F  I  S  K  V  P  I  I  L  T  I  N  P  K  K  M  S  K  V  G  L  R  L  K  E  L  G  F  D  V  T  S  S  A  F  R  A  A  F  T  A  M  S  V  L  S  D  S  K  M  E  K  K  L  E  N  Y  R  S  M  G  F  S  D  G  E  I  R  N  I  F  R  L  Q  P  T  C  M  F  Y  S  E  D  N  I  R  A  I  V  A  F  Y  V  N  K  L  H  L  S  L  S  H  L  S  Q  R  P  S  F  L  L  R  S  L  K  K  R  V  I  P  R  C  S  V  M  Q  V  L  W  S  T  G  V  I  S  K  V  N  K  L  S  S  I  L  M  I  S  E  K  D  F  L  R  K  C  V  T  K  Y  E  A  Q  V  P  Q  L  L  A  A  Y  R  G  E  L  V  F  N  E  Y  T  F  H  L  R  E  I  H  Q  I  S  V  S  K  A  S  S  S  K  A  T  *  L  S  S  I  C  T  I  C  I  F  H  C  T  I  Y  C  R  I  H  V  I  N  I  V  S  H  I  *  V  E  L  L  P  F  C  S  *  R  Y  *  N  S  L  L  V  S  L  *  R  K  *  I  F   </second_frame>
            <third_frame>   L  L  R  H  F  H  W  S  C  S  Y  C  *  :  A  Y  N  L  C  P  L  R  H  D  L  G  I  D  T  S  L  S  *  G  S  L  F  L  K  C  F  N  L  S  I  N  V  K  E  T  C  V  Q  R  S  G  Q  P  A  F  S  C  S  L  C  Q  L  A  V  A  A  T  S  Q  L  M  R  A  H  S  L  I  C  I  T  E  R  H  M  V  Y  Q  K  K  T  S  L  V  K  Q  N  H  S  N  *  I  L  L  N  V  Q  K  F  Q  L  L  L  S  S  S  K  T  M  G  F  L  Q  P  K  R  R  D  *  L  D  Y  A  L  N  Y  *  Y  R  R  W  T  K  P  *  S  P  S  *  S  S  C  N  Q  L  A  L  L  K  M  N  A  I  R  L  S  V  V  T  P  T  Y  S  *  V  A  *  R  N  N  *  L  H  A  L  I  P  *  R  C  S  W  V  V  K  C  K  Q  W  L  P  S  N  E  V  R  R  S  L  I  I  N  S  L  M  V  W  S  R  L  Y  R  Y  C  T  N  L  V  F  L  I  L  K  L  Q  S  L  F  Q  K  F  P  L  S  *  L  *  I  P  K  R  *  V  R  L  A  *  D  L  R  N  W  G  L  M  L  L  L  Q  H  L  G  Q  L  L  P  Q  C  L  Y  L  V  I  P  K  W  K  R  N  W  K  T  T  E  V  W  A  F  Q  M  A  R  S  A  I  Y  S  D  C  S  Q  L  A  C  F  I  L  R  I  I  S  G  Q  L  W  H  S  M  L  I  N  S  I  *  A  Y  H  T  C  H  K  D  H  P  F  Y  C  V  A  *  R  R  G  L  F  P  G  V  L  S  C  K  F  C  G  Q  Q  A  L  F  Q  K  L  T  N  Y  P  Q  F  *  *  L  V  K  R  T  S  Y  G  S  V  L  L  N  M  K  H  K  F  L  N  C  *  L  P  T  V  V  N  L  C  S  T  N  T  L  F  I  Y  V  K  F  I  R  F  Q  C  Q  R  H  H  L  L  K  L  R  S  L  V  V  F  A  P  S  V  S  F  T  A  P  F  T  V  A  F  M  L  S  T  L  F  P  I  F  K  L  N  Y  C  R  S  V  R  R  G  T  R  I  L  Y  W  *  A  Y  E  G  N  K  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76632" stop="77870"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1236</number_coding_nucleotides>
                  <number_encoded_amino_acids>412</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HISFVGLPFFKMLQSLYKCQRNLCTKIRTTSLLVQFVSTSCGSNIPTDESTLVDLYHRKTHGLSKENVISEAEPLQLDTAQCSKVSAFVEFFQNHGFSATQTKRLIRLRPKLLVSKVDKTLKPKLKFLQSIGFTEDERNKIICGNPNILMSSVEKQLTPCFDSLKMFMGSEMQAMAAIKRSPQIFNYKFSDGLEQTLQVLHQLGIPDSEASEFISKVPIILTINPKKMSKVGLRLKELGFDVTSSAFRAAFTAMSVLSDSKMEKKLENYRSMGFSDGEIRNIFRLQPTCMFYSEDNIRAIVAFYVNKLHLSLSHLSQRPSFLLRSLKKRVIPRCSVMQVLWSTGVISKVNKLSSILMISEKDFLRKCVTKYEAQVPQLLAAYRGELVFNEYTFHLREIHQISVSKASSSKAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="76585" e_stop="77983"/>
            <exon e_start="78075" e_stop="78089"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.446" acc_prob="0.950" e_score="0.979"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="76585" e_stop="77983" e_length="1399"/>
          </exon>
          <intron i_serial="1" don_prob="0.446" acc_prob="0.950">
            <gDNA_intron_boundary i_start="77984" i_stop="78074" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.600">
            <gDNA_exon_boundary e_start="78075" e_stop="78089" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76585" stop="77453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77183" stop="77983"/>
              <exon start="78075" stop="78089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGCAGGCTTATAATTTGTGTCCCTTGAGGCATGATCTTGGCATTGACACATCTCTTTCGTAGGGCTCCCTTTTTTTAAAATGCTTCAATCTCTCTATAAATGTCAAAGAAACTTGTGTACAAAGATCAGGACAACCAGCCTTCTCGTGCAGTTTGTGTCAACTAGCTGTGGCAGCAACATCCCAACTGATGAGAGCACACTCGTTGATTTGTATCACAGAAAGACACATGGTTTATCAAAAGAAAACGTCATTAGTGAAGCAGAACCACTCCAATTAGATACTGCTCAATGTTCAAAAGTTTCAGCTTTTGTTGAGTTCTTCCAAAACCATGGGTTTTCTGCAACCCAAACGAAGAGACTAATTAGACTACGCCCTAAATTACTAGTATCGAAGGTGGACAAAACCCTAAAGCCCAAGTTGAAGTTCTTGCAATCAATTGGCTTTACTGAAGATGAACGCAATAAGATTATCTGTGGTAACCCCAACATACTCATGAGTAGCGTAGAGAAACAACTGACTCCATGCTTTGATTCCCTAAAGATGTTCATGGGTAGTGAAATGCAAGCAATGGCTGCCATCAAACGAAGTCCGCAGATCTTTAATTATAAATTCTCTGATGGTTTGGAGCAGACTCTACAGGTATTGCACCAACTTGGTATTCCTGATTCTGAAGCTTCAGAGTTTATTTCAAAAGTTCCCATTATCTTGACTATAAATCCCAAAAAGATGAGTAAGGTTGGCTTGAGACTTAAGGAATTGGGGTTTGATGTTACTTCTTCAGCATTTAGGGCAGCTTTTACCGCAATGTCTGTACTTAGTGATTCCAAAATGGAAAAGAAACTGGAAAACTACCGAAGTATGGGCTTTTCAGATGGCGAGATCCGCAATATATTCAGATTGCAGCCAACTTGCATGTTTTATTCTGAGGATAATATCAGGGCAATTGTGGCATTCTATGTTAATAAACTCCATTTGAGCCTATCACACTTGTCACAAAGACCATCCTTTCTATTGCGTAGCCTGAAGAAGAGGGTTATTCCCAGGTGTTCTGTCATGCAAGTTTTGTGGTCAACAGGCGTTATTTCAAAAGTTAACAAACTATCCTCAATTCTAATGATTAGTGAAAAGGACTTCTTACGGAAGTGTGTTACTAAATATGAAGCACAAGTTCCTCAACTGCTAGCTGCCTACCGTGGTGAACTTGTGTTCAACGAATACACTTTTCATTTACGTGAAATTCATCAGATTTCAGTGTCAAAGGCATCATCTTCTAAAGCTACGTAGCTTAGTAGTATTTGCACCATCTGTATCTTTCACTGCACCATTTACTGTCGCATTCATGTTATCAACATTGTTTCCCATATTTAAGTTGAACTACTGCCGTTCTGTTCGTAGAG : GGCAAAACTAGAGAA</gDNA_template>
            <first_frame> *  Q  A  Y  N  L  C  P  L  R  H  D  L  G  I  D  T  S  L  S  *  G  S  L  F  L  K  C  F  N  L  S  I  N  V  K  E  T  C  V  Q  R  S  G  Q  P  A  F  S  C  S  L  C  Q  L  A  V  A  A  T  S  Q  L  M  R  A  H  S  L  I  C  I  T  E  R  H  M  V  Y  Q  K  K  T  S  L  V  K  Q  N  H  S  N  *  I  L  L  N  V  Q  K  F  Q  L  L  L  S  S  S  K  T  M  G  F  L  Q  P  K  R  R  D  *  L  D  Y  A  L  N  Y  *  Y  R  R  W  T  K  P  *  S  P  S  *  S  S  C  N  Q  L  A  L  L  K  M  N  A  I  R  L  S  V  V  T  P  T  Y  S  *  V  A  *  R  N  N  *  L  H  A  L  I  P  *  R  C  S  W  V  V  K  C  K  Q  W  L  P  S  N  E  V  R  R  S  L  I  I  N  S  L  M  V  W  S  R  L  Y  R  Y  C  T  N  L  V  F  L  I  L  K  L  Q  S  L  F  Q  K  F  P  L  S  *  L  *  I  P  K  R  *  V  R  L  A  *  D  L  R  N  W  G  L  M  L  L  L  Q  H  L  G  Q  L  L  P  Q  C  L  Y  L  V  I  P  K  W  K  R  N  W  K  T  T  E  V  W  A  F  Q  M  A  R  S  A  I  Y  S  D  C  S  Q  L  A  C  F  I  L  R  I  I  S  G  Q  L  W  H  S  M  L  I  N  S  I  *  A  Y  H  T  C  H  K  D  H  P  F  Y  C  V  A  *  R  R  G  L  F  P  G  V  L  S  C  K  F  C  G  Q  Q  A  L  F  Q  K  L  T  N  Y  P  Q  F  *  *  L  V  K  R  T  S  Y  G  S  V  L  L  N  M  K  H  K  F  L  N  C  *  L  P  T  V  V  N  L  C  S  T  N  T  L  F  I  Y  V  K  F  I  R  F  Q  C  Q  R  H  H  L  L  K  L  R  S  L  V  V  F  A  P  S  V  S  F  T  A  P  F  T  V  A  F  M  L  S  T  L  F  P  I  F  K  L  N  Y  C  R  S  V  R  R   : G  Q  N  *  R  </first_frame>
            <second_frame>  S  R  L  I  I  C  V  P  *  G  M  I  L  A  L  T  H  L  F  R  R  A  P  F  F  *  N  A  S  I  S  L  *  M  S  K  K  L  V  Y  K  D  Q  D  N  Q  P  S  R  A  V  C  V  N  *  L  W  Q  Q  H  P  N  *  *  E  H  T  R  *  F  V  S  Q  K  D  T  W  F  I  K  R  K  R  H  *  *  S  R  T  T  P  I  R  Y  C  S  M  F  K  S  F  S  F  C  *  V  L  P  K  P  W  V  F  C  N  P  N  E  E  T  N  *  T  T  P  *  I  T  S  I  E  G  G  Q  N  P  K  A  Q  V  E  V  L  A  I  N  W  L  Y  *  R  *  T  Q  *  D  Y  L  W  *  P  Q  H  T  H  E  *  R  R  E  T  T  D  S  M  L  *  F  P  K  D  V  H  G  *  *  N  A  S  N  G  C  H  Q  T  K  S  A  D  L  *  L  *  I  L  *  W  F  G  A  D  S  T  G  I  A  P  T  W  Y  S  *  F  *  S  F  R  V  Y  F  K  S  S  H  Y  L  D  Y  K  S  Q  K  D  E  *  G  W  L  E  T  *  G  I  G  V  *  C  Y  F  F  S  I  *  G  S  F  Y  R  N  V  C  T  *  *  F  Q  N  G  K  E  T  G  K  L  P  K  Y  G  L  F  R  W  R  D  P  Q  Y  I  Q  I  A  A  N  L  H  V  L  F  *  G  *  Y  Q  G  N  C  G  I  L  C  *  *  T  P  F  E  P  I  T  L  V  T  K  T  I  L  S  I  A  *  P  E  E  E  G  Y  S  Q  V  F  C  H  A  S  F  V  V  N  R  R  Y  F  K  S  *  Q  T  I  L  N  S  N  D  *  *  K  G  L  L  T  E  V  C  Y  *  I  *  S  T  S  S  S  T  A  S  C  L  P  W  *  T  C  V  Q  R  I  H  F  S  F  T  *  N  S  S  D  F  S  V  K  G  I  I  F  *  S  Y  V  A  *  *  Y  L  H  H  L  Y  L  S  L  H  H  L  L  S  H  S  C  Y  Q  H  C  F  P  Y  L  S  *  T  T  A  V  L  F  V  E  :  G  K  T  R  E </second_frame>
            <third_frame>   A  G  L  *  F  V  S  L  E  A  *  S  W  H  *  H  I  S  F  V  G  L  P  F  F  K  M  L  Q  S  L  Y  K  C  Q  R  N  L  C  T  K  I  R  T  T  S  L  L  V  Q  F  V  S  T  S  C  G  S  N  I  P  T  D  E  S  T  L  V  D  L  Y  H  R  K  T  H  G  L  S  K  E  N  V  I  S  E  A  E  P  L  Q  L  D  T  A  Q  C  S  K  V  S  A  F  V  E  F  F  Q  N  H  G  F  S  A  T  Q  T  K  R  L  I  R  L  R  P  K  L  L  V  S  K  V  D  K  T  L  K  P  K  L  K  F  L  Q  S  I  G  F  T  E  D  E  R  N  K  I  I  C  G  N  P  N  I  L  M  S  S  V  E  K  Q  L  T  P  C  F  D  S  L  K  M  F  M  G  S  E  M  Q  A  M  A  A  I  K  R  S  P  Q  I  F  N  Y  K  F  S  D  G  L  E  Q  T  L  Q  V  L  H  Q  L  G  I  P  D  S  E  A  S  E  F  I  S  K  V  P  I  I  L  T  I  N  P  K  K  M  S  K  V  G  L  R  L  K  E  L  G  F  D  V  T  S  S  A  F  R  A  A  F  T  A  M  S  V  L  S  D  S  K  M  E  K  K  L  E  N  Y  R  S  M  G  F  S  D  G  E  I  R  N  I  F  R  L  Q  P  T  C  M  F  Y  S  E  D  N  I  R  A  I  V  A  F  Y  V  N  K  L  H  L  S  L  S  H  L  S  Q  R  P  S  F  L  L  R  S  L  K  K  R  V  I  P  R  C  S  V  M  Q  V  L  W  S  T  G  V  I  S  K  V  N  K  L  S  S  I  L  M  I  S  E  K  D  F  L  R  K  C  V  T  K  Y  E  A  Q  V  P  Q  L  L  A  A  Y  R  G  E  L  V  F  N  E  Y  T  F  H  L  R  E  I  H  Q  I  S  V  S  K  A  S  S  S  K  A  T  *  L  S  S  I  C  T  I  C  I  F  H  C  T  I  Y  C  R  I  H  V  I  N  I  V  S  H  I  *  V  E  L  L  P  F  C  S  *  R :   A  K  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76632" stop="77870"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1236</number_coding_nucleotides>
                  <number_encoded_amino_acids>412</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HISFVGLPFFKMLQSLYKCQRNLCTKIRTTSLLVQFVSTSCGSNIPTDESTLVDLYHRKTHGLSKENVISEAEPLQLDTAQCSKVSAFVEFFQNHGFSATQTKRLIRLRPKLLVSKVDKTLKPKLKFLQSIGFTEDERNKIICGNPNILMSSVEKQLTPCFDSLKMFMGSEMQAMAAIKRSPQIFNYKFSDGLEQTLQVLHQLGIPDSEASEFISKVPIILTINPKKMSKVGLRLKELGFDVTSSAFRAAFTAMSVLSDSKMEKKLENYRSMGFSDGEIRNIFRLQPTCMFYSEDNIRAIVAFYVNKLHLSLSHLSQRPSFLLRSLKKRVIPRCSVMQVLWSTGVISKVNKLSSILMISEKDFLRKCVTKYEAQVPQLLAAYRGELVFNEYTFHLREIHQISVSKASSSKAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="80591" PGL_stop="78954"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80591" e_stop="80360"/>
            <exon e_start="79172" e_stop="78954"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80591" e_stop="80360" e_length="232"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80359" i_stop="79173" i_length="1187"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79172" e_stop="78954" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80591" stop="80360"/>
              <exon start="79172" stop="78954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACAGAGATACCTACAAATGGCGAAATCAATGAGATCAAAGAGGGAAAAGAGGCTGAGAGCTATAAGGAGGGATATAGTTGCTACAGAACCATCTGTTCTTAAGAAAGAAGCTGCTAAATTGGCTGCCCAAGAAGCTGCCCTTGCTGCTCCTAAGCTTATTGTTAAGTCTCCCTTCAGCCGCACCACCATGGATACTTCTGCCTCTACTTCTAACGACGAATCTAAAATGG : ATGTGGAGATGGCTGATGGCAATCAAAGTTCAAAATCTCTAAAACCTCTTGGAAAGAAGATGAAAAAGAAGCTTAAAATAGCTAAGAAGAAGAATCATGGCAAGGGAAAGATCAGGAGGAAGAATGTTTGACTGCAGGCGGTAGCCATCTTGCTAAGCTGATAGATGTCTTGTTACTTACTGTTGACAAGTCCCTCCCATATTCTCTCCTTGATTCATG</gDNA_template>
            <first_frame> K  Q  R  Y  L  Q  M  A  K  S  M  R  S  K  R  E  K  R  L  R  A  I  R  R  D  I  V  A  T  E  P  S  V  L  K  K  E  A  A  K  L  A  A  Q  E  A  A  L  A  A  P  K  L  I  V  K  S  P  F  S  R  T  T  M  D  T  S  A  S  T  S  N  D  E  S  K  M   : D  V  E  M  A  D  G  N  Q  S  S  K  S  L  K  P  L  G  K  K  M  K  K  K  L  K  I  A  K  K  K  N  H  G  K  G  K  I  R  R  K  N  V  *  L  Q  A  V  A  I  L  L  S  *  *  M  S  C  Y  L  L  L  T  S  P  S  H  I  L  S  L  I  H  </first_frame>
            <second_frame>  N  R  D  T  Y  K  W  R  N  Q  *  D  Q  R  G  K  R  G  *  E  L  *  G  G  I  *  L  L  Q  N  H  L  F  L  R  K  K  L  L  N  W  L  P  K  K  L  P  L  L  L  L  S  L  L  L  S  L  P  S  A  A  P  P  W  I  L  L  P  L  L  L  T  T  N  L  K  W  :  M  W  R  W  L  M  A  I  K  V  Q  N  L  *  N  L  L  E  R  R  *  K  R  S  L  K  *  L  R  R  R  I  M  A  R  E  R  S  G  G  R  M  F  D  C  R  R  *  P  S  C  *  A  D  R  C  L  V  T  Y  C  *  Q  V  P  P  I  F  S  P  *  F  M </second_frame>
            <third_frame>   T  E  I  P  T  N  G  E  I  N  E  I  K  E  G  K  E  A  E  S  Y  K  E  G  Y  S  C  Y  R  T  I  C  S  *  E  R  S  C  *  I  G  C  P  R  S  C  P  C  C  S  *  A  Y  C  *  V  S  L  Q  P  H  H  H  G  Y  F  C  L  Y  F  *  R  R  I  *  N  G :   C  G  D  G  *  W  Q  S  K  F  K  I  S  K  T  S  W  K  E  D  E  K  E  A  *  N  S  *  E  E  E  S  W  Q  G  K  D  Q  E  E  E  C  L  T  A  G  G  S  H  L  A  K  L  I  D  V  L  L  L  T  V  D  K  S  L  P  Y  S  L  L  D  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80591" stop="80360"/>
                    <exon start="79172" stop="79042"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQRYLQMAKSMRSKREKRLRAIRRDIVATEPSVLKKEAAKLAAQEAALAAPKLIVKSPFSRTTMDTSASTSNDESKMDVEMADGNQSSKSLKPLGKKMKKKLKIAKKKNHGKGKIRRKNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="82279" PGL_stop="86009"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82279" e_stop="82989"/>
            <exon e_start="83116" e_stop="83445"/>
            <exon e_start="84797" e_stop="84912"/>
            <exon e_start="85466" e_stop="85556"/>
            <exon e_start="85639" e_stop="86009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.984"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.236" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="82279" e_stop="82989" e_length="711"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="82990" i_stop="83115" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83116" e_stop="83445" e_length="330"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83446" i_stop="84796" i_length="1351"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84797" e_stop="84912" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="0.949">
            <gDNA_intron_boundary i_start="84913" i_stop="85465" i_length="553"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85466" e_stop="85556" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.236" acc_prob="0.993">
            <gDNA_intron_boundary i_start="85557" i_stop="85638" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="85639" e_stop="86009" e_length="371"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82279" stop="82794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82289" stop="82842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82289" stop="82728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82290" stop="82746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82302" stop="82989"/>
              <exon start="83116" stop="83228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83210" stop="83445"/>
              <exon start="84797" stop="84912"/>
              <exon start="85466" stop="85556"/>
              <exon start="85639" stop="85959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83211" stop="83445"/>
              <exon start="84797" stop="84912"/>
              <exon start="85466" stop="85556"/>
              <exon start="85639" stop="85959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84814" stop="84912"/>
              <exon start="85466" stop="85556"/>
              <exon start="85639" stop="86009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84815" stop="84912"/>
              <exon start="85466" stop="85556"/>
              <exon start="85639" stop="85999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285176" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAGATTCAGTCAGTGGTTGATCTGCGCTAGGGTTGCTTCCAGCTTGAACCTTCCTATATGCTTCCATTTTGTTGATCTTCAATCTCGATTTTCAATTTCTCCAGCTCAATTTTTATCTATAGAACAAGAAAAAGTGTATAATTTTGGAAAGACAAGAAAAGAAAACTAGATGATGTCTGGAAATGCTTTAGTCCATGTATCAACAAATTCTACTGTTTTCCCCATCATACCCAGTAGAAGAAATGTGTTGGGTGATCGTTTTCTGTGTATAAAATCACCAATCAGGCCTAAAAATCGAACCTTTAGTGTGAAAGCAATGTCTGCAAATACGGGTCATAGTCAAGAACAAGAGCAACAACCCGAGTCATCTTCCGACCAGAAAGGTCCACTTTCTGTTATTTTAGATGTTCCCAGGAATATTTGGAAGCGAACTATGCGTCCATTGAGTGATTTTGGGTTTGGTAAAAGGAGCATCTGGGAAGGTGGGGTTGGGTTGTTTATCGTTTCGGGTACTGTGTTGTTGGCACTCAGCTTAGCTTGGTTGAGAGGGTTTCAGCTGCGGTCTAGGTTTAGGAAGTATTTAGCTGTGCTTGAGTTTGAGCAGGCTTGTGGCATCTGCACTGGCACACCTGTTAGAATCAGAGGAGTAAGTATTGGTAATGTGATTCGAGTCAATCCTTCCTTGAGAAATGTTGAAGCTGTTGTTGAG : GTTGAAGATGATAAGATCATTATTCCTCGAAACTCGTTAGTTGAGGTGAACCAGTCTGGTCTTATCATGGAAACCATGATTGATATCACACCTCGAGATCCAATCCCAATACCTTCTGCAGGGCCCCTGGATCCGGATTGTGTTAAGGAGGGTCTGATAATTTGCGACAGGCAAAAGATTAAAGGACAACAAGGGGTTAGTCTAGATGCATTGGTTGGAATATTCACACGTCTTGGCCGTGAAGCAGAAGAAATTGGTTTGGCGAATACCTATGCTTTGGCTGAGAGAGCTCTAAATGTTATTGAGGAGGCGCGACCGCTGCTTACAAAG : ATTAAAGCCATGGCTGAGGATGTCCAACCTATGCTAGCTGATGTTCGTGATAGTGGCTTACTGAAGGAAGTTGAGAGTTTAACCCGAAGTCTGGCACTAACATCTGAAGATATAAG : GAGAGTGCACTCCACGGTCATGACTCCTGAGAACACCGAATTGATACGGAAGTCTATTTATACGCTGGTCTTCACTTTGAAGAATGTTGAG : AGCATTAGCTCCGACATTTTGGGATTCACTGGCGATGAAGCTACTAGGCGCAATTTGAAAATGCTTATCAAATCGCTAAGCAGGCTATTGTAAAGTTGATTAATGTCTTGCAATACTACTAGCCTGAGAGAGGTTCCAAAGAGGAGAGGTTGTTCTGTTTGGCATTGACAAGAGTCCTTGGGCTATGGATTATAGGTTTTCTGCTAATCCAAAAGGATTTCAAGGTGTGAAAGCTTCCCTCTTCACCTTTGTTCTGTGTTAGAAATTGCAATATAAATGTCATTAGAAGATGGTTTCACTAATATGAATTTTGATTGTTTGGTCACTTTCTCTTTTGAGTTTCCTAATATCAGCACCTCATGTTTTCATAA</gDNA_template>
            <first_frame> N  R  F  S  Q  W  L  I  C  A  R  V  A  S  S  L  N  L  P  I  C  F  H  F  V  D  L  Q  S  R  F  S  I  S  P  A  Q  F  L  S  I  E  Q  E  K  V  Y  N  F  G  K  T  R  K  E  N  *  M  M  S  G  N  A  L  V  H  V  S  T  N  S  T  V  F  P  I  I  P  S  R  R  N  V  L  G  D  R  F  L  C  I  K  S  P  I  R  P  K  N  R  T  F  S  V  K  A  M  S  A  N  T  G  H  S  Q  E  Q  E  Q  Q  P  E  S  S  S  D  Q  K  G  P  L  S  V  I  L  D  V  P  R  N  I  W  K  R  T  M  R  P  L  S  D  F  G  F  G  K  R  S  I  W  E  G  G  V  G  L  F  I  V  S  G  T  V  L  L  A  L  S  L  A  W  L  R  G  F  Q  L  R  S  R  F  R  K  Y  L  A  V  L  E  F  E  Q  A  C  G  I  C  T  G  T  P  V  R  I  R  G  V  S  I  G  N  V  I  R  V  N  P  S  L  R  N  V  E  A  V  V  E  :  V  E  D  D  K  I  I  I  P  R  N  S  L  V  E  V  N  Q  S  G  L  I  M  E  T  M  I  D  I  T  P  R  D  P  I  P  I  P  S  A  G  P  L  D  P  D  C  V  K  E  G  L  I  I  C  D  R  Q  K  I  K  G  Q  Q  G  V  S  L  D  A  L  V  G  I  F  T  R  L  G  R  E  A  E  E  I  G  L  A  N  T  Y  A  L  A  E  R  A  L  N  V  I  E  E  A  R  P  L  L  T  K  :  I  K  A  M  A  E  D  V  Q  P  M  L  A  D  V  R  D  S  G  L  L  K  E  V  E  S  L  T  R  S  L  A  L  T  S  E  D  I  R :   R  V  H  S  T  V  M  T  P  E  N  T  E  L  I  R  K  S  I  Y  T  L  V  F  T  L  K  N  V  E  :  S  I  S  S  D  I  L  G  F  T  G  D  E  A  T  R  R  N  L  K  M  L  I  K  S  L  S  R  L  L  *  S  *  L  M  S  C  N  T  T  S  L  R  E  V  P  K  R  R  G  C  S  V  W  H  *  Q  E  S  L  G  Y  G  L  *  V  F  C  *  S  K  R  I  S  R  C  E  S  F  P  L  H  L  C  S  V  L  E  I  A  I  *  M  S  L  E  D  G  F  T  N  M  N  F  D  C  L  V  T  F  S  F  E  F  P  N  I  S  T  S  C  F  H   </first_frame>
            <second_frame>  T  D  S  V  S  G  *  S  A  L  G  L  L  P  A  *  T  F  L  Y  A  S  I  L  L  I  F  N  L  D  F  Q  F  L  Q  L  N  F  Y  L  *  N  K  K  K  C  I  I  L  E  R  Q  E  K  K  T  R  *  C  L  E  M  L  *  S  M  Y  Q  Q  I  L  L  F  S  P  S  Y  P  V  E  E  M  C  W  V  I  V  F  C  V  *  N  H  Q  S  G  L  K  I  E  P  L  V  *  K  Q  C  L  Q  I  R  V  I  V  K  N  K  S  N  N  P  S  H  L  P  T  R  K  V  H  F  L  L  F  *  M  F  P  G  I  F  G  S  E  L  C  V  H  *  V  I  L  G  L  V  K  G  A  S  G  K  V  G  L  G  C  L  S  F  R  V  L  C  C  W  H  S  A  *  L  G  *  E  G  F  S  C  G  L  G  L  G  S  I  *  L  C  L  S  L  S  R  L  V  A  S  A  L  A  H  L  L  E  S  E  E  *  V  L  V  M  *  F  E  S  I  L  P  *  E  M  L  K  L  L  L  R :   L  K  M  I  R  S  L  F  L  E  T  R  *  L  R  *  T  S  L  V  L  S  W  K  P  *  L  I  S  H  L  E  I  Q  S  Q  Y  L  L  Q  G  P  W  I  R  I  V  L  R  R  V  *  *  F  A  T  G  K  R  L  K  D  N  K  G  L  V  *  M  H  W  L  E  Y  S  H  V  L  A  V  K  Q  K  K  L  V  W  R  I  P  M  L  W  L  R  E  L  *  M  L  L  R  R  R  D  R  C  L  Q  R :   L  K  P  W  L  R  M  S  N  L  C  *  L  M  F  V  I  V  A  Y  *  R  K  L  R  V  *  P  E  V  W  H  *  H  L  K  I  *   : G  E  C  T  P  R  S  *  L  L  R  T  P  N  *  Y  G  S  L  F  I  R  W  S  S  L  *  R  M  L  R :   A  L  A  P  T  F  W  D  S  L  A  M  K  L  L  G  A  I  *  K  C  L  S  N  R  *  A  G  Y  C  K  V  D  *  C  L  A  I  L  L  A  *  E  R  F  Q  R  G  E  V  V  L  F  G  I  D  K  S  P  W  A  M  D  Y  R  F  S  A  N  P  K  G  F  Q  G  V  K  A  S  L  F  T  F  V  L  C  *  K  L  Q  Y  K  C  H  *  K  M  V  S  L  I  *  I  L  I  V  W  S  L  S  L  L  S  F  L  I  S  A  P  H  V  F  I  </second_frame>
            <third_frame>   Q  I  Q  S  V  V  D  L  R  *  G  C  F  Q  L  E  P  S  Y  M  L  P  F  C  *  S  S  I  S  I  F  N  F  S  S  S  I  F  I  Y  R  T  R  K  S  V  *  F  W  K  D  K  K  R  K  L  D  D  V  W  K  C  F  S  P  C  I  N  K  F  Y  C  F  P  H  H  T  Q  *  K  K  C  V  G  *  S  F  S  V  Y  K  I  T  N  Q  A  *  K  S  N  L  *  C  E  S  N  V  C  K  Y  G  S  *  S  R  T  R  A  T  T  R  V  I  F  R  P  E  R  S  T  F  C  Y  F  R  C  S  Q  E  Y  L  E  A  N  Y  A  S  I  E  *  F  W  V  W  *  K  E  H  L  G  R  W  G  W  V  V  Y  R  F  G  Y  C  V  V  G  T  Q  L  S  L  V  E  R  V  S  A  A  V  *  V  *  E  V  F  S  C  A  *  V  *  A  G  L  W  H  L  H  W  H  T  C  *  N  Q  R  S  K  Y  W  *  C  D  S  S  Q  S  F  L  E  K  C  *  S  C  C  *   : G  *  R  *  *  D  H  Y  S  S  K  L  V  S  *  G  E  P  V  W  S  Y  H  G  N  H  D  *  Y  H  T  S  R  S  N  P  N  T  F  C  R  A  P  G  S  G  L  C  *  G  G  S  D  N  L  R  Q  A  K  D  *  R  T  T  R  G  *  S  R  C  I  G  W  N  I  H  T  S  W  P  *  S  R  R  N  W  F  G  E  Y  L  C  F  G  *  E  S  S  K  C  Y  *  G  G  A  T  A  A  Y  K   : D  *  S  H  G  *  G  C  P  T  Y  A  S  *  C  S  *  *  W  L  T  E  G  S  *  E  F  N  P  K  S  G  T  N  I  *  R  Y  K  :  E  S  A  L  H  G  H  D  S  *  E  H  R  I  D  T  E  V  Y  L  Y  A  G  L  H  F  E  E  C  *   : E  H  *  L  R  H  F  G  I  H  W  R  *  S  Y  *  A  Q  F  E  N  A  Y  Q  I  A  K  Q  A  I  V  K  L  I  N  V  L  Q  Y  Y  *  P  E  R  G  S  K  E  E  R  L  F  C  L  A  L  T  R  V  L  G  L  W  I  I  G  F  L  L  I  Q  K  D  F  K  V  *  K  L  P  S  S  P  L  F  C  V  R  N  C  N  I  N  V  I  R  R  W  F  H  *  Y  E  F  *  L  F  G  H  F  L  F  *  V  S  *  Y  Q  H  L  M  F  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82450" stop="82989"/>
                    <exon start="83116" stop="83445"/>
                    <exon start="84797" stop="84912"/>
                    <exon start="85466" stop="85556"/>
                    <exon start="85639" stop="85731"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1167</number_coding_nucleotides>
                  <number_encoded_amino_acids>389</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MMSGNALVHVSTNSTVFPIIPSRRNVLGDRFLCIKSPIRPKNRTFSVKAMSANTGHSQEQEQQPESSSDQKGPLSVILDVPRNIWKRTMRPLSDFGFGKRSIWEGGVGLFIVSGTVLLALSLAWLRGFQLRSRFRKYLAVLEFEQACGICTGTPVRIRGVSIGNVIRVNPSLRNVEAVVEVEDDKIIIPRNSLVEVNQSGLIMETMIDITPRDPIPIPSAGPLDPDCVKEGLIICDRQKIKGQQGVSLDALVGIFTRLGREAEEIGLANTYALAERALNVIEEARPLLTKIKAMAEDVQPMLADVRDSGLLKEVESLTRSLALTSEDIRRVHSTVMTPENTELIRKSIYTLVFTLKNVESISSDILGFTGDEATRRNLKMLIKSLSRLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="82279" e_stop="82989"/>
            <exon e_start="83116" e_stop="83645"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.984"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="82279" e_stop="82989" e_length="711"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="82990" i_stop="83115" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83116" e_stop="83645" e_length="530"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82279" stop="82794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82289" stop="82842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82289" stop="82728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82290" stop="82746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82302" stop="82989"/>
              <exon start="83116" stop="83228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83138" stop="83645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAGATTCAGTCAGTGGTTGATCTGCGCTAGGGTTGCTTCCAGCTTGAACCTTCCTATATGCTTCCATTTTGTTGATCTTCAATCTCGATTTTCAATTTCTCCAGCTCAATTTTTATCTATAGAACAAGAAAAAGTGTATAATTTTGGAAAGACAAGAAAAGAAAACTAGATGATGTCTGGAAATGCTTTAGTCCATGTATCAACAAATTCTACTGTTTTCCCCATCATACCCAGTAGAAGAAATGTGTTGGGTGATCGTTTTCTGTGTATAAAATCACCAATCAGGCCTAAAAATCGAACCTTTAGTGTGAAAGCAATGTCTGCAAATACGGGTCATAGTCAAGAACAAGAGCAACAACCCGAGTCATCTTCCGACCAGAAAGGTCCACTTTCTGTTATTTTAGATGTTCCCAGGAATATTTGGAAGCGAACTATGCGTCCATTGAGTGATTTTGGGTTTGGTAAAAGGAGCATCTGGGAAGGTGGGGTTGGGTTGTTTATCGTTTCGGGTACTGTGTTGTTGGCACTCAGCTTAGCTTGGTTGAGAGGGTTTCAGCTGCGGTCTAGGTTTAGGAAGTATTTAGCTGTGCTTGAGTTTGAGCAGGCTTGTGGCATCTGCACTGGCACACCTGTTAGAATCAGAGGAGTAAGTATTGGTAATGTGATTCGAGTCAATCCTTCCTTGAGAAATGTTGAAGCTGTTGTTGAG : GTTGAAGATGATAAGATCATTATTCCTCGAAACTCGTTAGTTGAGGTGAACCAGTCTGGTCTTATCATGGAAACCATGATTGATATCACACCTCGAGATCCAATCCCAATACCTTCTGCAGGGCCCCTGGATCCGGATTGTGTTAAGGAGGGTCTGATAATTTGCGACAGGCAAAAGATTAAAGGACAACAAGGGGTTAGTCTAGATGCATTGGTTGGAATATTCACACGTCTTGGCCGTGAAGCAGAAGAAATTGGTTTGGCGAATACCTATGCTTTGGCTGAGAGAGCTCTAAATGTTATTGAGGAGGCGCGACCGCTGCTTACAAAGGTTTGATGCACTTTACATTTATTCACCTCCCATTTCATTCTTTTTGTATGGATGATGTTTAATCTGCTTACAAAGGTTTGATGCACTTTACATTTATTCACCTCCCATTTCATTCTTTTTGTATGGATGATGTTTAATATTAAGGATAAAAGAAGAAGGAAGTCTAACAAACAGATGAATTTAACTTCTGTACTTTTAGC</gDNA_template>
            <first_frame> N  R  F  S  Q  W  L  I  C  A  R  V  A  S  S  L  N  L  P  I  C  F  H  F  V  D  L  Q  S  R  F  S  I  S  P  A  Q  F  L  S  I  E  Q  E  K  V  Y  N  F  G  K  T  R  K  E  N  *  M  M  S  G  N  A  L  V  H  V  S  T  N  S  T  V  F  P  I  I  P  S  R  R  N  V  L  G  D  R  F  L  C  I  K  S  P  I  R  P  K  N  R  T  F  S  V  K  A  M  S  A  N  T  G  H  S  Q  E  Q  E  Q  Q  P  E  S  S  S  D  Q  K  G  P  L  S  V  I  L  D  V  P  R  N  I  W  K  R  T  M  R  P  L  S  D  F  G  F  G  K  R  S  I  W  E  G  G  V  G  L  F  I  V  S  G  T  V  L  L  A  L  S  L  A  W  L  R  G  F  Q  L  R  S  R  F  R  K  Y  L  A  V  L  E  F  E  Q  A  C  G  I  C  T  G  T  P  V  R  I  R  G  V  S  I  G  N  V  I  R  V  N  P  S  L  R  N  V  E  A  V  V  E  :  V  E  D  D  K  I  I  I  P  R  N  S  L  V  E  V  N  Q  S  G  L  I  M  E  T  M  I  D  I  T  P  R  D  P  I  P  I  P  S  A  G  P  L  D  P  D  C  V  K  E  G  L  I  I  C  D  R  Q  K  I  K  G  Q  Q  G  V  S  L  D  A  L  V  G  I  F  T  R  L  G  R  E  A  E  E  I  G  L  A  N  T  Y  A  L  A  E  R  A  L  N  V  I  E  E  A  R  P  L  L  T  K  V  *  C  T  L  H  L  F  T  S  H  F  I  L  F  V  W  M  M  F  N  L  L  T  K  V  *  C  T  L  H  L  F  T  S  H  F  I  L  F  V  W  M  M  F  N  I  K  D  K  R  R  R  K  S  N  K  Q  M  N  L  T  S  V  L  L   </first_frame>
            <second_frame>  T  D  S  V  S  G  *  S  A  L  G  L  L  P  A  *  T  F  L  Y  A  S  I  L  L  I  F  N  L  D  F  Q  F  L  Q  L  N  F  Y  L  *  N  K  K  K  C  I  I  L  E  R  Q  E  K  K  T  R  *  C  L  E  M  L  *  S  M  Y  Q  Q  I  L  L  F  S  P  S  Y  P  V  E  E  M  C  W  V  I  V  F  C  V  *  N  H  Q  S  G  L  K  I  E  P  L  V  *  K  Q  C  L  Q  I  R  V  I  V  K  N  K  S  N  N  P  S  H  L  P  T  R  K  V  H  F  L  L  F  *  M  F  P  G  I  F  G  S  E  L  C  V  H  *  V  I  L  G  L  V  K  G  A  S  G  K  V  G  L  G  C  L  S  F  R  V  L  C  C  W  H  S  A  *  L  G  *  E  G  F  S  C  G  L  G  L  G  S  I  *  L  C  L  S  L  S  R  L  V  A  S  A  L  A  H  L  L  E  S  E  E  *  V  L  V  M  *  F  E  S  I  L  P  *  E  M  L  K  L  L  L  R :   L  K  M  I  R  S  L  F  L  E  T  R  *  L  R  *  T  S  L  V  L  S  W  K  P  *  L  I  S  H  L  E  I  Q  S  Q  Y  L  L  Q  G  P  W  I  R  I  V  L  R  R  V  *  *  F  A  T  G  K  R  L  K  D  N  K  G  L  V  *  M  H  W  L  E  Y  S  H  V  L  A  V  K  Q  K  K  L  V  W  R  I  P  M  L  W  L  R  E  L  *  M  L  L  R  R  R  D  R  C  L  Q  R  F  D  A  L  Y  I  Y  S  P  P  I  S  F  F  L  Y  G  *  C  L  I  C  L  Q  R  F  D  A  L  Y  I  Y  S  P  P  I  S  F  F  L  Y  G  *  C  L  I  L  R  I  K  E  E  G  S  L  T  N  R  *  I  *  L  L  Y  F  *  </second_frame>
            <third_frame>   Q  I  Q  S  V  V  D  L  R  *  G  C  F  Q  L  E  P  S  Y  M  L  P  F  C  *  S  S  I  S  I  F  N  F  S  S  S  I  F  I  Y  R  T  R  K  S  V  *  F  W  K  D  K  K  R  K  L  D  D  V  W  K  C  F  S  P  C  I  N  K  F  Y  C  F  P  H  H  T  Q  *  K  K  C  V  G  *  S  F  S  V  Y  K  I  T  N  Q  A  *  K  S  N  L  *  C  E  S  N  V  C  K  Y  G  S  *  S  R  T  R  A  T  T  R  V  I  F  R  P  E  R  S  T  F  C  Y  F  R  C  S  Q  E  Y  L  E  A  N  Y  A  S  I  E  *  F  W  V  W  *  K  E  H  L  G  R  W  G  W  V  V  Y  R  F  G  Y  C  V  V  G  T  Q  L  S  L  V  E  R  V  S  A  A  V  *  V  *  E  V  F  S  C  A  *  V  *  A  G  L  W  H  L  H  W  H  T  C  *  N  Q  R  S  K  Y  W  *  C  D  S  S  Q  S  F  L  E  K  C  *  S  C  C  *   : G  *  R  *  *  D  H  Y  S  S  K  L  V  S  *  G  E  P  V  W  S  Y  H  G  N  H  D  *  Y  H  T  S  R  S  N  P  N  T  F  C  R  A  P  G  S  G  L  C  *  G  G  S  D  N  L  R  Q  A  K  D  *  R  T  T  R  G  *  S  R  C  I  G  W  N  I  H  T  S  W  P  *  S  R  R  N  W  F  G  E  Y  L  C  F  G  *  E  S  S  K  C  Y  *  G  G  A  T  A  A  Y  K  G  L  M  H  F  T  F  I  H  L  P  F  H  S  F  C  M  D  D  V  *  S  A  Y  K  G  L  M  H  F  T  F  I  H  L  P  F  H  S  F  C  M  D  D  V  *  Y  *  G  *  K  K  K  E  V  *  Q  T  D  E  F  N  F  C  T  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82450" stop="82989"/>
                    <exon start="83116" stop="83451"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MMSGNALVHVSTNSTVFPIIPSRRNVLGDRFLCIKSPIRPKNRTFSVKAMSANTGHSQEQEQQPESSSDQKGPLSVILDVPRNIWKRTMRPLSDFGFGKRSIWEGGVGLFIVSGTVLLALSLAWLRGFQLRSRFRKYLAVLEFEQACGICTGTPVRIRGVSIGNVIRVNPSLRNVEAVVEVEDDKIIIPRNSLVEVNQSGLIMETMIDITPRDPIPIPSAGPLDPDCVKEGLIICDRQKIKGQQGVSLDALVGIFTRLGREAEEIGLANTYALAERALNVIEEARPLLTKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 284 chains have been computed
$ 
$ memory statistics:
$ 1759904 bytes spliced alignments in total
$ 220 spliced alignments have been stored
$ 7999 bytes was the average size of a spliced alignment
$ 37192 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1859 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 330 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:19:13
-->
