<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:21:10"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539328" ref_strand="+" ref_description="SGN-E539328 [TUS-59-A12]">
      <seq>caaatgcacgttgcaaatattgccagtacgaattgaccaattcaaattaaataagctgagtactattgatacttgaaaaggaaacatcaatagtcagaattatttatcttattcacgcatgactcaaacatgtcctagacattttcttgataccaaaaatcacttcagctcctggtgttggcgtaatcctttggttcgtcatcgtcatccctgtagttcccttctgatgtttcctctccgagatgttcatttacagattgaattccctgatctgcactaacctgttcttggcttccattatatgatgcttcagatctcccaccaaatcccgtgttagcgaagctattattattgttactaggagctccaccaaagtcattcccactgttgccaccaccataaccacctgagaaactactgccttgaccagaataattgatgtttggagtgctgcttccgtagttgccaccctcaacaggggaactgttgttcccatagctgctactaccacctccatagctaccgtagcctccagcagaactgtgaccactagaaaatccaccaccgtaattgttggtttggtaacctccagaacctgcaaaatttctgccttcccccccgccatagttatagccactactgctaccgtagccacctcctccagcagaattgtagccacctcctccaggagaattgtagtcgagtgagcctttctacaaagagctagagcctacacctggtgacatgattcgcaatcaaagcttgtctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="2323" stop="1023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2023" g_stop="1326" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E539328" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2023" e_stop="1326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGCACGTTGCAAATATTGCCAGTACGAATTGACCAATTCAAATTAAATAAGCTGAGTACTATTGATACTTGAAAAGGAAACATCAATAGTCAGAATTATTTATCTTATTCACGCATGACTCAAACATGTCCTAGACATTTTCTTGATACCAAAAATCACTTCAGCTCCTGGTGTTGGCGTAATCCTTTGGTTCGTCATCGTCATCCCTGTAGTTCCCTTCTGATGTTTCCTCTCCGAGATGTTCATTTACAGATTGAATTCCCTGATCTGCACTAACCTGTTCTTGGCTTCCATTATATGATGCTTCAGATCTCCCACCAAATCCCGTGTTAGCGAAGCTATTATTATTGTTACTAGGAGCTCCACCAAAGTCATTCCCACTGTTGCCACCACCATAACCACCTGAGAAACTACTGCCTTGACCAGAATAATTGATGTTTGGAGTGCTGCTTCCGTAGTTGCCACCCTCAACAGGGGAACTGTTGTTCCCATAGCTGCTACTACCACCTCCATAGCTACCGTAGCCTCCAGCAGAACTGTGACCACTAGAAAATCCACCACCGTAATTGTTGGTTTGGTAACCTCCAGAACCTGCAAAATTTCTGCCTTCCCCCCCGCCATAGTTATAGCCACTACTGCTACCGTAGCCACCTCCTCCAGCAGAATTGTAGCCACCTCCTCCAGGAGAATTGTA</genome_strand>
        <mrna_strand>CAAATGCACGTTGCAAATATTGCCAGTACGAATTGACCAATTCAAATTAAATAAGCTGAGTACTATTGATACTTGAAAAGGAAACATCAATAGTCAGAATTATTTATCTTATTCACGCATGACTCAAACATGTCCTAGACATTTTCTTGATACCAAAAATCACTTCAGCTCCTGGTGTTGGCGTAATCCTTTGGTTCGTCATCGTCATCCCTGTAGTTCCCTTCTGATGTTTCCTCTCCGAGATGTTCATTTACAGATTGAATTCCCTGATCTGCACTAACCTGTTCTTGGCTTCCATTATATGATGCTTCAGATCTCCCACCAAATCCCGTGTTAGCGAAGCTATTATTATTGTTACTAGGAGCTCCACCAAAGTCATTCCCACTGTTGCCACCACCATAACCACCTGAGAAACTACTGCCTTGACCAGAATAATTGATGTTTGGAGTGCTGCTTCCGTAGTTGCCACCCTCAACAGGGGAACTGTTGTTCCCATAGCTGCTACTACCACCTCCATAGCTACCGTAGCCTCCAGCAGAACTGTGACCACTAGAAAATCCACCACCGTAATTGTTGGTTTGGTAACCTCCAGAACCTGCAAAATTTCTGCCTTCCCCCCCGCCATAGTTATAGCCACTACTGCTACCGTAGCCACCTCCTCCAGCAGAATTGTAGCCACCTCCTCCAGGAGAATTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284080" ref_strand="+" ref_description="SGN-E284080 [cLER-13-K12]">
      <seq>aaatgcacgttgcaaatattgccagtacgaattgaccaattcaaattaaataagctgagtactattgatacttgaaaaggaaacatcaatagtcagaattatttatcttattcacgcatgactcaaacatgtcctagacattttcttgataccaaaaatcacttcagctcctggtgttggcgtaatcctttggttcgtcatcgtcatccctgtagttcccttctgatgtttcctctccgagatgttcatttacagattgaattccctgatctgcactaacctgttcttggcttccattatatgatgcttcagatctcccaccaaatcccgtgttagcgaagctattattattgttactaggagctccaccaaagtcattcccactgttgccaccaccataaccacctgagaaactactgccttgaccagaataattgatgtttggagtgctgcttccgtagttgccaccctcaacaggggaactgttgttcccatagctgctactaccacctccatagctaccgtagcctccagcagaactgtgaccactagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="2322" stop="1167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2022" g_stop="1467" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E284080" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2022" e_stop="1467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGCACGTTGCAAATATTGCCAGTACGAATTGACCAATTCAAATTAAATAAGCTGAGTACTATTGATACTTGAAAAGGAAACATCAATAGTCAGAATTATTTATCTTATTCACGCATGACTCAAACATGTCCTAGACATTTTCTTGATACCAAAAATCACTTCAGCTCCTGGTGTTGGCGTAATCCTTTGGTTCGTCATCGTCATCCCTGTAGTTCCCTTCTGATGTTTCCTCTCCGAGATGTTCATTTACAGATTGAATTCCCTGATCTGCACTAACCTGTTCTTGGCTTCCATTATATGATGCTTCAGATCTCCCACCAAATCCCGTGTTAGCGAAGCTATTATTATTGTTACTAGGAGCTCCACCAAAGTCATTCCCACTGTTGCCACCACCATAACCACCTGAGAAACTACTGCCTTGACCAGAATAATTGATGTTTGGAGTGCTGCTTCCGTAGTTGCCACCCTCAACAGGGGAACTGTTGTTCCCATAGCTGCTACTACCACCTCCATAGCTACCGTAGCCTCCAGCAGAACTGTGACCACTAGAAAA</genome_strand>
        <mrna_strand>AAATGCACGTTGCAAATATTGCCAGTACGAATTGACCAATTCAAATTAAATAAGCTGAGTACTATTGATACTTGAAAAGGAAACATCAATAGTCAGAATTATTTATCTTATTCACGCATGACTCAAACATGTCCTAGACATTTTCTTGATACCAAAAATCACTTCAGCTCCTGGTGTTGGCGTAATCCTTTGGTTCGTCATCGTCATCCCTGTAGTTCCCTTCTGATGTTTCCTCTCCGAGATGTTCATTTACAGATTGAATTCCCTGATCTGCACTAACCTGTTCTTGGCTTCCATTATATGATGCTTCAGATCTCCCACCAAATCCCGTGTTAGCGAAGCTATTATTATTGTTACTAGGAGCTCCACCAAAGTCATTCCCACTGTTGCCACCACCATAACCACCTGAGAAACTACTGCCTTGACCAGAATAATTGATGTTTGGAGTGCTGCTTCCGTAGTTGCCACCCTCAACAGGGGAACTGTTGTTCCCATAGCTGCTACTACCACCTCCATAGCTACCGTAGCCTCCAGCAGAACTGTGACCACTAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328641" ref_strand="+" ref_description="SGN-E328641 [cTOC-23-N16]">
      <seq>ctaccctcacactccgcacccttctctctctctacacaatacttttttaatggcgggtatggacattgatggcaacgttgaagaggctgcaaggcgtgtacaggtccggttcgtcacgaagttgaaagcaccctttaaggctccgcctacttctattgctattccctctaatcttacccgattgggcctctcttccatcgtcaacaacctccttaaagccggaaatgatgattggaatcccgagccttttgattttctcattgatggggaactggtccgcatgtcacttgaagagtttctccttgccaagggcatttcagctgagaaaatattggagattgagtacattagagctgtggctccgaggaaagaagaagagccatctttgcatgacgattgggtcagtgcagttgatggttctaattccatgtttgttgtgactggatgttatgatggttttggaagaatatggatggctgctggatcttgtacgcatctactggagggccatactgatgcaattacttctgtttgtgttgtcaaaccaagagtggctcaaaatggtgctgatcaaatagtcgctacggctttcaaggataggacactgcgtctctggaagtttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="15523" stop="19040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15823" g_stop="16043" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16044" i_stop="16622" i_length="579">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16623" g_stop="16723" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="322" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16724" i_stop="17543" i_length="820">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17544" g_stop="17650" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="429" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17651" i_stop="18136" i_length="486">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18137" g_stop="18172" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="465" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18173" i_stop="18253" i_length="81">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18254" g_stop="18339" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="551" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18340" i_stop="18665" i_length="326">
            <donor d_prob="0.377" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18666" g_stop="18733" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="619" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18734" i_stop="18813" i_length="80">
            <donor d_prob="0.736" d_score="0.98"/>
            <acceptor a_prob="0.580" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18814" g_stop="18821" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="627" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E328641" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15823" e_stop="16043"/>
          <exon e_start="16623" e_stop="16723"/>
          <exon e_start="17544" e_stop="17650"/>
          <exon e_start="18137" e_stop="18172"/>
          <exon e_start="18254" e_stop="18339"/>
          <exon e_start="18666" e_stop="18733"/>
          <exon e_start="18814" e_stop="18821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCCTCACACTCCGCACCCTTCTCTCTCTCTACACAATACTTTTTTAATGGCGGGTATGGACATTGATGGCAACGTTGAAGAGGCTGCAAGGCGTGTACAGGTCCGGTTCGTCACGAAGTTGAAAGCACCCTTTAAGGCTCCGCCTACTTCTATTGCTATTCCCTCTAATCTTACCCGATTGGGCCTCTCTTCCATCGTCAACAACCTCCTTAAAGCCGGTAACTTTTAGTTCTAACTGATTTTGTTAAGTGGAATGTGCTTATAGTATGGGACTTGGATGTGGTTGATTGATTGGTTGTGTCATTTAGTTTTGAGTTTATATGGAAGTGGATTTATTTTTTGTTTTAGAGAATTAATTATAATTACAGAGGATATGGTCGTTGATACTGAAATAGTTGCTTGTGGGTTAGAGTGGTTGTTGTATATAGCTCATGTAAATCGTCAATTTGGCTTAATTGATTGGTTTAACTCACTTGTTTAAGCTATGAGCTAGTAAATTGCTATAGATGAGTGTTTGTTAAGCTATATTGACAAGTTGAATAGGTTTTTGTTTATGGTACGAGAGCTTAGTTATTATGGGTCAACGGTGCCATAATTGAGTAACTTAGAAATGAATCTATCAAAATGTATATTGTGTCTAAATTTGGGATCATATATAGAAGAGGGGGTTTCATATTTAATTAAATAAAGGACCTGATCTTATGTATAATGGACTAGCACTGTACTATCTGCCCAGTGATTTTGCTATTTGTGTTTTTTACTAGTATGCTTACCTGTTTGCCATTTGATTTTATTAGGAAATGATGATTGGAATCCCGAGCCTTTTGATTTTCTCATTGATGGGGAACTGGTCCGCATGTCACTTGAAGAGTTTCTCCTTGCCAAGGGCATTTCAGCTGTAAGTTTCTTTCCTGAAAGAACTTCCTGACTGCTTGAATGACCACAGTTCCAGTTGTACTGTTTTGTTTCTTCAGACCAACAAAATAAAAAAATGCTTACGGAAGCTGGTTTTAATCTTGTTTCCAAACTCATAGAATGGACTGTTTTGTCTCTTCAGACCAACTCAAAGAAAAAGATACTTAAGGAAGGGGGCTAATCTTGTTTCCAGAAAAAAAACGTAAAATGAACTCTGTACATTTGTGTAAACATTGATTTTAAACACGAAAACAGAAGTGTATTAGTGGCCCGAGCTCGAGGTGAACTTGTACCAACATCTGGATTAGCTCAAATGTTGTCCCTCGTTGCTTGGATTTCGTTCTGACTCCACAGTAGTAGGTTTTGTTCTTTATATGCTTACAATTGTATCTCTAATTGGAGTTTCAAAGTTGTAGAAAAATCTAAAGTATTAACAGCTCTGTTTTAAAATTGTAGGTTGTAACAATAAATGCAAAAAATTGTAGTCAGTGTAGTTTAATGACAAAACTTTTTCTTTCTGGAAATGATTAGATAACCGAGTTATACTTATGAGGCGTTTGAAATAATTTTACGTATTGCAAAAAGATATACACACCTGAAGGTTCTAGAAGTACTGTTACTCTGTAATTCTAGTTCCCTCCTAGTTGTTTTTCTTATGTTCTTGTTCACTAGCCAGAAGTGACTTCTTTCAGAGTCACAAACCATTGAGATTTTTGACAATATATTTTACTTATGTTATTATACGTTTATTCAGTGGTTCTTCTACTCATCTTTCTTCCAACTGTTTTCTATATCTTTTACAGGAGAAAATATTGGAGATTGAGTACATTAGAGCTGTGGCTCCGAGGAAAGAAGAAGAGCCATCTTTGCATGACGATTGGGTCAGTGCAGTTGATGGTTCTAATTCCATGTAAGCATGAGTGTGAAATTTGTTTTTCTAGAATCTCAGTTTGATCCTTGTAATTTTTACCGCCTTGTATATCATTCTTTGTTTAATATATTTAAGATTTGGTGGTTGTATGCTAACTTTACTGAAAGACAATATTGGTTTATCCTAGCCAAAAAATAAAATAAAATAGAGCCAGCATAATATAACTAAATGGAGTGTTTGCATTTCTTTGTTTATTGTTTCTCTGTACCCTATTCTCCAGGTGTTGTGCATTGACATCACTCATAGTGTCTTTTACTCACTAGATTAATAAGGAACACATTGTTTTATATAATTACATTATGCTGCTATTGTCCCCTGTGTTTTGAAGGTAAATTTCATCCTCCATGTGCTTTTCCCCCCCTAAAATATTTGATGGTGACCGTTAATAATGTAATTAAAGGTCTTCTTTGCATACAATCAACTATTGCCTTAATTGACAAGATGTGCATATTTGTGATCTGACAGGTTTGTTGTGACTGGATGTTATGATGGTTTTGGAAGGTAACCTACTGAATTTTTACTCTTATGCTAATCGCCTTTTTTGGTTATTGTATCAACCTAACATTTGATAGTGCTAAACAGAATATGGATGGCTGCTGGATCTTGTACGCATCTACTGGAGGGCCATACTGATGCAATTACTTCTGTTTGTGTTGTCAAACCAAGAGGTATCACTGGGATATCTCAGTTGCTCATTGTCTAGCATTAGGCCTTATCGTCTGCTGCCGTTATCATTTACCTTGACACTATGTTCATACTCCCACATCACTTGCTCTTGATATTTCTTTTTTCTTTTTAATATTTCTTGTTGATATCCATTCTATTAACTTGCCTTGCAATACCGGAACCTACTGGATACCAAAAACTTTTACAGCATTACAATCATTATGGAGATATAGTTTGACTTTCTCCTGGATATGTACTTCTCTGTGCTTCATTTCTTCTGGAATTCTGTCTTTTTATTAATCATGCTTATACCTTTTATTTTCTGTAGTGGCTCAAAATGGTGCTGATCAAATAGTCGCTACGGCTTCCAAGGATAGGACACTGCGTCTCTGGAAGGTAAATGATGTGCCTGTGCTCCTTATAGCTCACTGCCTAATTCGTGATCTTCCCCTAATTAGTATTGTTTGGCTAAAAAGTTTGATGC</genome_strand>
        <mrna_strand>CTACCCTCACACTCCGCACCCTTCTCTCTCTCTACACAATACTTTTTTAATGGCGGGTATGGACATTGATGGCAACGTTGAAGAGGCTGCAAGGCGTGTACAGGTCCGGTTCGTCACGAAGTTGAAAGCACCCTTTAAGGCTCCGCCTACTTCTATTGCTATTCCCTCTAATCTTACCCGATTGGGCCTCTCTTCCATCGTCAACAACCTCCTTAAAGCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGATGATTGGAATCCCGAGCCTTTTGATTTTCTCATTGATGGGGAACTGGTCCGCATGTCACTTGAAGAGTTTCTCCTTGCCAAGGGCATTTCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAATATTGGAGATTGAGTACATTAGAGCTGTGGCTCCGAGGAAAGAAGAAGAGCCATCTTTGCATGACGATTGGGTCAGTGCAGTTGATGGTTCTAATTCCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTGTGACTGGATGTTATGATGGTTTTGGAAG.................................................................................AATATGGATGGCTGCTGGATCTTGTACGCATCTACTGGAGGGCCATACTGATGCAATTACTTCTGTTTGTGTTGTCAAACCAAGAG......................................................................................................................................................................................................................................................................................................................................TGGCTCAAAATGGTGCTGATCAAATAGTCGCTACGGCTTTCAAGGATAGGACACTGCGTCTCTGGAAG................................................................................TTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702854" ref_strand="+" ref_description="SGN-E702854 [FA19DE07]">
      <seq>gaaaagcacacgaacaatcatcagatagtacaatttgatacgcgacgactcccacaacttttattatatatatggagacgcgaaagagactattctaataggcgcaagctgttgacatgttggacgtcaccagtaggtcaatacaacaccctttcgtctgcgcaggaaggcccgcctcatttctttttgcatagacggcaaaaagaaaagcgttgggaacaagggggaaaggaagccaacggttgatagagccatgaaaaagatggcagctttgccatcggcagactgggaatgggaaaatgccaccgccggtgctgctgcaggccttgccactgtcacattctctcatccccttgatgttgttcgcacccggttccaggtttacgatggaagaatctccaatgtcccggcctatcggaacactcctcacgctttgtttgccattgctcgaagtgagggtcttagaggactttatgctggcttttaccctgctgttcttgggtcaactatttcatggggtttatattttttcttttatagcaaggctaagcaaaggtatctaagaaacagggaggagctgagtcctggccttcaccttgcttcagctgcagaagcaggagcgctggtctgtctttgcaccaaccccatttggcttgtgaaaacaagattgcaacttcagactcctaatcagattcgtccatacaccggatttcatgatgctttaagaacgataatcaaagaagaaggatggagggcactgtacaaggggcttatgccaagcctatttctgattacacatggtgctattcagttcacggcatatgaggaattccgcaaagtcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="22924" stop="30722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23224" g_stop="23324" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23325" i_stop="26529" i_length="3205">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26530" g_stop="26808" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="380" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26809" i_stop="26894" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26895" g_stop="26971" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="457" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26972" i_stop="27911" i_length="940">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27912" g_stop="27988" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="534" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27989" i_stop="29050" i_length="1062">
            <donor d_prob="0.416" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29051" g_stop="29141" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="625" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29142" i_stop="29705" i_length="564">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29706" g_stop="29796" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="716" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29797" i_stop="30088" i_length="292">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30089" g_stop="30162" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="790" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30163" i_stop="30366" i_length="204">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="30367" g_stop="30422" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="791" r_stop="846" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E702854" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23224" e_stop="23324"/>
          <exon e_start="26530" e_stop="26808"/>
          <exon e_start="26895" e_stop="26971"/>
          <exon e_start="27912" e_stop="27988"/>
          <exon e_start="29051" e_stop="29141"/>
          <exon e_start="29706" e_stop="29796"/>
          <exon e_start="30089" e_stop="30162"/>
          <exon e_start="30367" e_stop="30422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCACACGAACAATCATCAGATAGTACAATTTGATACGCGACGACTCCCACAACTTTTATTATATATATGGAGACGCGAAAGAGACTATTCTAATAGGTCAGTCATTTTCCCACGCATATATATTTTGAATTTCTTATGTGTTTTGAAATATCAAGATGATGACCGATTACGTCTTCGTTTTCTTTTTTTAGAAAAAGAAATTATGGCTAGGGTTTCTGATTATCTCTTGAACTAGTCCTTGGAGTTCTTCTGTAGTAGTGGAATTATTTTGTATTGGAATCTTTAATGTATGAGTTAGGGTTTTTGCGGGAAGTTGGATTTATTGACTATATAGGGATTTAACTGTTCTTGTAATCTGATTGTGTTTGCTGTGCTCTGCTATTTGGGATTTCAGAAAAAAAGTAATCCCTTTATTCTAAAAATAGAATGTTAATGTGGGACTCCAACATGCATACTGAAAAAAAAATATATGTCAAGAATCAAGATTGAGTGCACAGACCAATAACCTTTGTTATTAGATGAATAGATGATATCTATAGCCACCGAGGATTTCAGTTGAATCCAATAGTTTGGTCAAAACTATGTATTTATTTCAAGAAATTTATTGAATTTGTGTAAATTATTCATTTAGTCCAAATATAAGAATCCCAAATCTATAAGCTTCAAATCCGGACTCTTCTTGACACCTTTTCTAAGTATACTCATTTCTCTACAGACCAGAGGTTATACAATTATACGGGCAACTACGACAGGAATATCAATGTTAACAAAGAACAGTATCCTTTCTATTGTGAACCAACTGAAAATATGTTCAAGTAGAAAGCAGCTGGAATCCCTTTACTCTTTGATGCTAAAGAATGGTGCAACCAAAGACTGTTTCTTGATGAACCAGTTCATCGCTACATGTTCTGCACTTAATAACCCAGATTTTGCATCCTTTGCATTTTCCCAGATGGAAAATCCCAATGTGTTCGTTTACAACGCATTAATAAGAGCTTTTGTTCATTGTCACATCCCGCATAAAGCATTACTGTTGTATATAGACATGTTAAGAACTCAAAATATTCCAAGTAGCTATACATTTTCATCGGTAGTTAAGGGTTGTACATTGATGTGTGGTCTAAGATTAGGGGAATGTATACATGGGAAGATTTGGGAATATGGGTTTGGATCCCATGTTTTTGTTCAAACTAGTCTGATTGATTTTTACTCTAATTTGGCTAGAGTTGATTTAGCGAGATTAGTGTTTGATGAAATGCCTGAAAGAGATAATTTTGCTTGGGCTGCAATGGTTTCAGCCCATGCCGGCACTGGCGATTTGGGTTCCGCTAGAAAATTGTTTGATGAGATGCCTGAAAAGATTACTGTTGCTTGTAATGCTATGATCAATGGGTATGCGAAAACAGGGGATGTCGAGTCGGCTGAGCTCTTGTTTAAGGAAATGTCAAGGAAGGATTTGATTGCATGGACGACGATGATTAACTGCTACTCTCAAAACAGGAAGTATGGTCAGGCTATAGAGGTTTTTTATGAAATGAAGAGTAACTTGATCACTCCTGATGAAGTAACAATGACAACTGTTATTTCTGCTTGTGCACATCTCGGCGTCCTGGATCAAGGAAAGGAGATGCATCTTTATGTTATGCAAAAAGGTTTTGATCTTGGTGTGCATATCGGGTCTGCATTAATTGACATGTATGCAAAATGTGGGAGTTTGGAGAGATCACTCTTGGTATTCTATAAATTGAGAGAGAAAAATCTTTTCTGTTGGAATTCTGCTATCGATGGATTGGCTGTTCATGGTTATGCAGAAGAAGCGTTAGCTCTTTTTAGCAGGATGGAGAAAGAAAAGGTAAAGCCAAATGGTATTACTTTCGTCAGCGTTCTTACAGCTTGTACTCATGCAGGGCTTGTTGAGAAGGGTCGAAAGAATTTTCTAAGTATGACTCAAGATTATGGCATTGTTCCTGAAATGGAGCACTTCGGGTGCATGGTTTATCTATTGTGTAAAGCTGGTTTGCTAGAGGAAGCACTCGAGGTTATAAGAAGCATGAGAGTGGAGCCAAATGCTGTTATTTGGGGTGCTTTACTTGGTGGTTGCAAGCTTCAGAAGAACTTGGAAATTGCTCAAGTTGCAGTCAAAAAGTTGAGCGTTTTGGAGCCAAACAACAGTGGCTATTACACCCTCCTAGTGAACATGTACGCTAATGCAAATAGATGGAGTGAAGTTGCCCGGATCAGGGCATTCTTGAGAGAGCTAGGAGTAGGAAAAGAACAACCGGGTTCCAGTTGGATTGAATTAAAGAAAAAGATCCATCAGTTTGCAGCGTGTGATAATTATCACCATTCTTCACAGGAGATCTATTCCTTACTAGATGGATTAGATGGGCAACTTAAGCTGGCTGGTCAAGTTCAGGAGCGTGAATTTGTTCTCTAATGACAGGACAAAGGCATCGTTGACATTATAGGCTTCATTGTCAAATTGTCTAAGTATTTTGTATTCTGTTCAGTGGATTCAAACCTGGACTGTACATTCGAAGTGGCAAAAAAAAAGCTAATTTGTTGTGAGTCACTATGCTTAGCTATGAAAATCATGCAGTTCGTTGAGTACTTGATAGTGTACAGTTTTTATCTTAAACGAGTAAATGTAATTCAACTGATTATAGCAGATTGATTACAGTTTTTATCAGTTTATAAATAGGCATGCATTATTATAGAGGTTTCGTGTAATTATGGACACGGCTCCCCTCCATTAGACTTTGAGACCAGTTTGTCCAGTGCAATAATCTTATTAAACCAGTACACTATTGTTCTAAGGGTCAAGGTCTGCTTAAAAAATTAGAAAAACACCTAATATACCGTGGTTAAACTAATAGTACAGTATTTATGATAGAAACATCAGAAAGTATTGCTGTGGGATTTCTATTAAATGACTTTTTCACTGATGTGTTATATTCTAAATAAGAACACTTAAAAGGGAATGGAGAGAGAGTAGTGTTTATTGTCGATAATAACATGGATGTGGATTTCTCTCATTAGGAGTATTTGTTCCATTCCATACAAATATGGGAGTAGAAGATGTTGGACACCAGAGTCATAAAAAAATTTAAAAAAATAAAAAATCAATGTGTGAATAATTTTCCTGATATATTTAAATGTCTGTTTATGATTTTTTTTTTCTTTTAAATACAACATGTATATTGTACTAACTGATGGTGTTTAATGTAATTTACTCTAATAATAATGCAAGTAGTAATTGACACTTCTTGATTGTTCCAAAAATTCCACAATAACTAATCAGGCGCAAGCTGTTGACATGTTGGACGTCACCAGTAGGTCAATACAACACCCTTTCGTCTGCGCAGGAAGGCCCGCCTCATTTCTTTTTGCATAGACGGCAAAAAGAAAAGCGTTGGGAACAAGGGGGAAAGGAAGCCAACGGTTGATAGAGCCATGAAAAAGATGGCAGCTTTGCCATCGGCAGACTGGGAATGGGAAAATGCCACCGCCGGTGCTGCTGCAGGCCTTGCCACTGTCACATTCTCTCATCCCCTTGATGTTGTTCGCACCCGGTTCCAGGGTAAGTGTTGTGCTTTCCTGCTATAGCAAATAAATGATCTCCTGTTGTTTCTTTGGAGTTTGATTTGTTGTATATGTTAATCATAGTTTACGATGGAAGAATCTCCAATGTCCCGGCCTATCGGAACACTCCTCACGCTTTGTTTGCCATTGCTCGAAGTGAGGTTTGTTTTTTCTGAATCTTTTCAATTTCTTTAAATATTGAAGCTATCTACATATGCATTGCTACTATTCCAAAACTCACTTTTTAATTCATGATACGAAAAAGAAGTTGATTTTTCAATTCATATAGTTGGTAGTTCTGGTGAGCGACAAATCATATAATGTGTTAAGGATGCTTGTTTCACAAATTTTTGGTTTCTCAAATAGGTAATATCAACTTCAGGAAAAATGTATATGCAACACTGTTTAAACAAATATGTTCTATCCTTGATTAGGAAACGACACATGGTTTAATGTTGAGTGTATGCCCTTACTTAGATGTATCATGTATCTAAATGGATGTTTTCAGTAAGTATCCTTTTACGAAGAAATGGACCATGTTCGTCTTGGTGCTAGTACAATGATAAATGTGGAGTTTTGCGGTTGTTATCATATTCTCTACGTTATGGTATTCAATCCACAGTAAGTCGGTTTATCCATTCACTCTCTCAAGAATCTTTTTGGAACCTTTGAGAGGAACTGTATCCTAGTAGAGTTTGTATATGGCGGCTACAACTGGAAAACTAGGTCCTTTGTTTTCTTATAAATATGGTTTAAGTCCTTAATTTGAATGTCAACAGTTGAGTGAACTGTCTTCTTGGACACGTTGATTTACTTCAAATCTTGATTGAGTGCTTTCTTGTTTCATTTACCTGTTCTCACAGGTAGAGTTTTATTCAGTCAGCCTCATGACATAATCATAGTGAGAAAATCCATCATATTTTGTCAATTACAATCAAACATACCACTGACATATGGTTTTCATGATGAAACTCCTTTACTTGCTGCCCCTTATTGAGTTTTTATGCTGCAGACTGTTGAATATTTGCCTTATTGCTCATATATGTTCTCATGTTTCCACCAAGATGACTTATTTATTTAGCTATAATGTTGTCTTATCAGGGTCTTAGAGGACTTTATGCTGGCTTTTACCCTGCTGTTCTTGGGTCAACTATTTCATGGGGTTTATATTTTTTCTTGTAAGTAACATCTTTTTCTTTTGTTGACAAAGCTCTAGTAAGTAGCATCTTTTGTCATTTAGCTTACCGAGAACATGACCTTAGATAGGGGGATATAGAGGGTCGTGGATTAGGGTGACGATTAGTTAGTAGTTGAGTATTGTCTCACTTTCCGGTGGATAAACTTGGTGGTAATTTGGAGCACCGTATCCACGTCTCCTTTCATATCAGTAGTATGAGTATTATTCTCGTTGCTTTTGTTCGTCGATTTTTGTTATCATTTGTTGATTTTGGTTCTGGTTTATTATTTAGCTGTGGTTACTGTTCCTTTAAGTCAGAATGCTATGTAATGCTTTCCTATTATTTGCCACAGCTTCTTCACTTTCGTATTTTATGTGTTCATAACTGCTTTGGGATGCTTTCCCTTTCTATATTTTCTTTTCTTTTTCGTTCTTTATCTTTTCTTTATTTGAGCCAGGGGGTCGAATGAAAACAATCTCTCTACCTTCACAAGGTAGGGGTAAGGTTTGCACACACACTATCCTCTCCAGACCCCACTTGTGAGATTACACTAGTATTATCTGAGGAGCGCTTAAGCCCTGAAGCAAGGCTCAAAATGTGTTGAGCACTTCGCTGGGCTTAATGTGTGCTTCAACGTCATCATTAGGGTTCTAAGCATGCTTTCTCTTGCCAATGAGCCTCTTCTGAAGAGGCTATATTTAACAATTGATACCGTAATTTTTTCAATTTCTTTGTTCATATATTTGTCATTCATGCTTATAATTATTAGTCTTGGACTAAACATTTATTTTTGCATTTTTTGTCCATTTGCACCTTTTCTCATTAAAGACCACACTTTGTTTGCGCTTAAAGCCCCAACAGACCTTAGAGCTTTTTGTTTTTTATAGCACAGACATACATTGGGTTTGTTGTTGTTTTTGGGATTGTTTGTAAGAAACAATGTCGCCCTGTAAGAAGCAACCAACATATTAGGTTGCTTTCACTTTGATGCTTCTTACATTTCTAGCTTGAGAGACATCTTTCTCTAACTGTAACATCTTTTTTGGAATTTCCTTTGCGTAGTTATAGCAAGGCTAAGCAAAGGTATCTAAGAAACAGGGAGGAGCTGAGTCCTGGCCTTCACCTTGCTTCAGCTGCAGAAGCAGGAGCGCTGGTCAGTAATCAAATTTCTGATGCTTTAATGAAAGAACAATGTACTTCACATGTTCAAATGTTCAGCACTAATTGACCAGTTTTTGGCAGGAGTGTAAAATGTAGATAGTTGAATGTGATTCTTTATTTGTTGTTGTAGTCCTTGTAGGAGTGCAATTGTAGTTGGCTTGCTGGTGACGAATCCCTTACTTTTACTGTTGATAAAACTTAAAATTGTGACCAAAGTGAAATCTCTTTTTTCAGTGGAAGGCAAGGTCGAGTAATAAACTTGCTGTTTTGGATTCCAACATAAAAAGGAAGTTACTGATTCCCATCATTGGCAAACCACCCATTAGGTGTTAGTTAAATATAGGAACTGGAGAACCTTGTAGACAAACGAATTTGATTGTGTTGATCTTTTTGTGACAACCTTTTCCCCCCTTTATCAGTTCTGATGACAACAGATTGATGACTTATTATTCAGGTGGACAAAATATGTGGCTTGCTTATTTCAGTAACTTTAAGCACATCCTGTAATGTTGCAGATTATGTCATATCTTAAAAGGTGTTTTTTGTTGGAATTCAGGTCTGTCTTTGCACCAACCCCATTTGGCTTGTGAAAACAAGATTGCAACTTCAGACTCCTAATCAGATTCGTCCATACACCGGATTTCATGGTCTGCTTCACCCTCGTAGTAACTTGTCAACATCTTTTTCATTGTGCTTTCATCTAACTTTGAGCACTCTAGGACTACTTCTTTCCATCTTAATTTCATATAAGAATTGTACCTTTATTTCTGCAATTTTGTGGTTCTATAGTTGTGTGTCCTCTTTTTGTTTACTGAGGTTCTATTGCAACTTCTGCTCTCTTCTGTATGTGCATGCACATTCAGTTTTCTGACTAGCTTCTTTTGTATTTACTTTTCTACATATTAACTTCATAGGAACTTTTTTGTATATGGATATCAGATGCTTTAAGAACGATAATCAAAGAAGAAGGATGGAGGGCACTGTACAAGGGGCTTATGCCAAGCCTATTTCTGGTTAGAATTGCATTCTCTTCCATTCTTCCCCATTATCTCATCCTGTAAATGAATTTGATCTTATCATGACATAATCTTTTCTAAGTTACCCATCATAGCATACCTAACTTTTTGGATCGATTATCTGTACAATACACAACAAATTGAATGCTTAAGTGTCACCATTCATTCATGAAACACGCTGGTCTGTTGTTGCTTAAGCAGATTACACATGGTGCTATTCAGTTCACGGCATATGAGGAATTCCGCAAAGTCATTCT</genome_strand>
        <mrna_strand>GAAAAGCACACGAACAATCATCAGATAGTACAATTTGATACGCGACGACTCCCACAACTTTTATTATATATATGGAGACGCGAAAGAGACTATTCTAATAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCAAGCTGTTGACATGTTGGACGTCACCAGTAGGTCAATACAACACCCTTTCGTCTGCGCAGGAAGGCCCGCCTCATTTCTTTTTGCATAGACGGCAAAAAGAAAAGCGTTGGGAACAAGGGGGAAAGGAAGCCAACGGTTGATAGAGCCATGAAAAAGATGGCAGCTTTGCCATCGGCAGACTGGGAATGGGAAAATGCCACCGCCGGTGCTGCTGCAGGCCTTGCCACTGTCACATTCTCTCATCCCCTTGATGTTGTTCGCACCCGGTTCCAGG......................................................................................TTTACGATGGAAGAATCTCCAATGTCCCGGCCTATCGGAACACTCCTCACGCTTTGTTTGCCATTGCTCGAAGTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTAGAGGACTTTATGCTGGCTTTTACCCTGCTGTTCTTGGGTCAACTATTTCATGGGGTTTATATTTTTTCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAGCAAGGCTAAGCAAAGGTATCTAAGAAACAGGGAGGAGCTGAGTCCTGGCCTTCACCTTGCTTCAGCTGCAGAAGCAGGAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCTTTGCACCAACCCCATTTGGCTTGTGAAAACAAGATTGCAACTTCAGACTCCTAATCAGATTCGTCCATACACCGGATTTCATG....................................................................................................................................................................................................................................................................................................ATGCTTTAAGAACGATAATCAAAGAAGAAGGATGGAGGGCACTGTACAAGGGGCTTATGCCAAGCCTATTTCTG............................................................................................................................................................................................................ATTACACATGGTGCTATTCAGTTCACGGCATATGAGGAATTCCGCAAAGTCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E397849" ref_strand="+" ref_description="SGN-E397849 [TUS-36-A4]">
      <seq>tcaactatttcatggggtttatattttttcttttatagcaaggctaagcaaaggtatctaagaaacagggaggagctgagtcctggccttcaccttgcttcagctgcagaagcaggagcgctggtctgtctttgcaccaaccccatttggcttgtgaaaacaagattgcaacttcagactcctaatcagattcgtccatacaccggatttcatgatgctttaagaacgataatcaaagaagaaggatggagggcactgtacaaggggcttatgccaagcctatttctgattacacatggtgctattcagttcacggcatatgaggaattccgcaaagtcattcttagctcgaaagctcaggagaatgaaaaccctcttgccacagctgctgacttgttggattcagttgactatgcaacactaggagcttcttctaagttggcagccactcttacaacatacccatttcaggttgtccgatctcgattgcagcaacgaccaagtacgactggagttccaagatacatggatagctggcatgttgtgaaggaaactgcaaggtttgagggtttacgcggcttttacagaggtatcacaacaaacgtgttgaaaaatgcccctgccccttcaattaccttcattgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="27657" stop="32701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27957" g_stop="27988" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27989" i_stop="29050" i_length="1062">
            <donor d_prob="0.416" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29051" g_stop="29141" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="123" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29142" i_stop="29705" i_length="564">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29706" g_stop="29796" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="214" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29797" i_stop="30088" i_length="292">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30089" g_stop="30162" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="288" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30163" i_stop="30366" i_length="204">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30367" g_stop="30477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="399" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30478" i_stop="31383" i_length="906">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31384" g_stop="31455" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="471" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31456" i_stop="31630" i_length="175">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31631" g_stop="31651" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="492" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31652" i_stop="31773" i_length="122">
            <donor d_prob="0.906" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31774" g_stop="31841" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="560" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="31842" i_stop="32314" i_length="473">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="32315" g_stop="32401" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="647" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E397849" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27957" e_stop="27988"/>
          <exon e_start="29051" e_stop="29141"/>
          <exon e_start="29706" e_stop="29796"/>
          <exon e_start="30089" e_stop="30162"/>
          <exon e_start="30367" e_stop="30477"/>
          <exon e_start="31384" e_stop="31455"/>
          <exon e_start="31631" e_stop="31651"/>
          <exon e_start="31774" e_stop="31841"/>
          <exon e_start="32315" e_stop="32401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTATTTCATGGGGTTTATATTTTTTCTTGTAAGTAACATCTTTTTCTTTTGTTGACAAAGCTCTAGTAAGTAGCATCTTTTGTCATTTAGCTTACCGAGAACATGACCTTAGATAGGGGGATATAGAGGGTCGTGGATTAGGGTGACGATTAGTTAGTAGTTGAGTATTGTCTCACTTTCCGGTGGATAAACTTGGTGGTAATTTGGAGCACCGTATCCACGTCTCCTTTCATATCAGTAGTATGAGTATTATTCTCGTTGCTTTTGTTCGTCGATTTTTGTTATCATTTGTTGATTTTGGTTCTGGTTTATTATTTAGCTGTGGTTACTGTTCCTTTAAGTCAGAATGCTATGTAATGCTTTCCTATTATTTGCCACAGCTTCTTCACTTTCGTATTTTATGTGTTCATAACTGCTTTGGGATGCTTTCCCTTTCTATATTTTCTTTTCTTTTTCGTTCTTTATCTTTTCTTTATTTGAGCCAGGGGGTCGAATGAAAACAATCTCTCTACCTTCACAAGGTAGGGGTAAGGTTTGCACACACACTATCCTCTCCAGACCCCACTTGTGAGATTACACTAGTATTATCTGAGGAGCGCTTAAGCCCTGAAGCAAGGCTCAAAATGTGTTGAGCACTTCGCTGGGCTTAATGTGTGCTTCAACGTCATCATTAGGGTTCTAAGCATGCTTTCTCTTGCCAATGAGCCTCTTCTGAAGAGGCTATATTTAACAATTGATACCGTAATTTTTTCAATTTCTTTGTTCATATATTTGTCATTCATGCTTATAATTATTAGTCTTGGACTAAACATTTATTTTTGCATTTTTTGTCCATTTGCACCTTTTCTCATTAAAGACCACACTTTGTTTGCGCTTAAAGCCCCAACAGACCTTAGAGCTTTTTGTTTTTTATAGCACAGACATACATTGGGTTTGTTGTTGTTTTTGGGATTGTTTGTAAGAAACAATGTCGCCCTGTAAGAAGCAACCAACATATTAGGTTGCTTTCACTTTGATGCTTCTTACATTTCTAGCTTGAGAGACATCTTTCTCTAACTGTAACATCTTTTTTGGAATTTCCTTTGCGTAGTTATAGCAAGGCTAAGCAAAGGTATCTAAGAAACAGGGAGGAGCTGAGTCCTGGCCTTCACCTTGCTTCAGCTGCAGAAGCAGGAGCGCTGGTCAGTAATCAAATTTCTGATGCTTTAATGAAAGAACAATGTACTTCACATGTTCAAATGTTCAGCACTAATTGACCAGTTTTTGGCAGGAGTGTAAAATGTAGATAGTTGAATGTGATTCTTTATTTGTTGTTGTAGTCCTTGTAGGAGTGCAATTGTAGTTGGCTTGCTGGTGACGAATCCCTTACTTTTACTGTTGATAAAACTTAAAATTGTGACCAAAGTGAAATCTCTTTTTTCAGTGGAAGGCAAGGTCGAGTAATAAACTTGCTGTTTTGGATTCCAACATAAAAAGGAAGTTACTGATTCCCATCATTGGCAAACCACCCATTAGGTGTTAGTTAAATATAGGAACTGGAGAACCTTGTAGACAAACGAATTTGATTGTGTTGATCTTTTTGTGACAACCTTTTCCCCCCTTTATCAGTTCTGATGACAACAGATTGATGACTTATTATTCAGGTGGACAAAATATGTGGCTTGCTTATTTCAGTAACTTTAAGCACATCCTGTAATGTTGCAGATTATGTCATATCTTAAAAGGTGTTTTTTGTTGGAATTCAGGTCTGTCTTTGCACCAACCCCATTTGGCTTGTGAAAACAAGATTGCAACTTCAGACTCCTAATCAGATTCGTCCATACACCGGATTTCATGGTCTGCTTCACCCTCGTAGTAACTTGTCAACATCTTTTTCATTGTGCTTTCATCTAACTTTGAGCACTCTAGGACTACTTCTTTCCATCTTAATTTCATATAAGAATTGTACCTTTATTTCTGCAATTTTGTGGTTCTATAGTTGTGTGTCCTCTTTTTGTTTACTGAGGTTCTATTGCAACTTCTGCTCTCTTCTGTATGTGCATGCACATTCAGTTTTCTGACTAGCTTCTTTTGTATTTACTTTTCTACATATTAACTTCATAGGAACTTTTTTGTATATGGATATCAGATGCTTTAAGAACGATAATCAAAGAAGAAGGATGGAGGGCACTGTACAAGGGGCTTATGCCAAGCCTATTTCTGGTTAGAATTGCATTCTCTTCCATTCTTCCCCATTATCTCATCCTGTAAATGAATTTGATCTTATCATGACATAATCTTTTCTAAGTTACCCATCATAGCATACCTAACTTTTTGGATCGATTATCTGTACAATACACAACAAATTGAATGCTTAAGTGTCACCATTCATTCATGAAACACGCTGGTCTGTTGTTGCTTAAGCAGATTACACATGGTGCTATTCAGTTCACGGCATATGAGGAATTCCGCAAAGTCATTCTTAGCTCGAAAGCTCAGGAGAATGAAAACCCTCTTGCCACAGCTGCTGACTTGTTGGTGAGGCTCTAAACCAATGTGTATTGCTTTCTTTGTATGCAATCAACTCCATAGATGTTTTAATCTTCGGATGACCAGCAAATTGATCCCATTGTGTATTATTAGATATTGGAATTCAGATGTGCCTAGATGAATAAGAATGAGTTCAGGTTGGACAGGAATTTTTTTAAGTTAGTGGGCAAATGGCACAGATGAGAATATGCAGTCCAACTCTTAGTATTATGCGCTTTCATTCCTCATTGTTTCGTCGTGTTACTTGTGCAGAAACATTAAGTAGGTGTCCTAGGAAATCTTGGAGGCAGAAACTTTTCAAGCCTTTTCTCGTTGAGCAACTAAGATATTATTCATATATCATGTCTACAATTATCCTAAGGCACATAAGGTTTCTTTTTCAGTCCCTTAACAACTGTATCTACCTTATTTACTGCATCAGAGTGGCACTAGACTATCCAACTCCTTCCCTCCCCATTAAAAGATAAATATAATTAGGAAAAAGGAAAAGAGAAAAAACTACTTGAGTAAAAGTAAAAGGGGATATTTTTCTTTAGATAAGCAGATCCGAGTGAAGAATGATTCAATTATTTTCCAAACTAACTATAAGGTTCTTGGTGTTTTTTTATGTGGTGAGAGGTGATTTATTATGAACCACTGTATTTTTTTAATTTTTTTTTTCTTAAAAGCAAGCAGATTTCATTATTGCTCTCGATGTAAATGGAAAAGAATTGGTTGTACCATGTCTAGAGGTTGATCATTACTCAAGAACACTATCAGATATGAATGATATAGTGGTCACTGTTATGATTAGTTTTCTTCATATGAATACTTTGTTGTAGAAAGTTGACCACTTCAGTTCCCAATAAGAGGGAACATTACACCTCAGTATTTGCTCTTACATTTCTTTCACAGGATTCAGTTGACTATGCAACACTAGGAGCTTCTTCTAAGTTGGCAGCCACTCTTACAACATACCCATTTCAGGTATGTTAGGGGTGTGGTAAGTTTGTTCTTATTCTATTATTGGGAATAAGGATTCGGGGAAATTTGAGCATTATGCAGCACTCATCTCCATGTGCCAATTTGTTCTAACAATCTTACGCCGTGCTCCCTCGCTTTTCTCATTAACTAATTATGTATTTATATGAAACCTTTTCAGGTTGTCCGATCTCGATTGCAGGTAACTGCCTTTCGTGTTACCACTTTACGTGACACTTGATACAACTCTTCTCAGTAGACAAGCATCTAGTGGTGATTTTAATTTTCTGTAACGTAGTAAATGGTCTATCTTCTCTCTAACAGCAACGACCAAGTACGACTGGAGTTCCAAGATACATGGATAGCTGGCATGTTGTGAAGGAAACTGCAAGGTCAGGATGTGTTTCAGCCTTATTTACAGCCTATGCACTTGATTAAATATACATGAACGCCATACACTAAGTTGCTCTATATTGAAATGTTTTCTGAATCTAATTGCAAGTTCATCGATTGCAACGGTTGCTGAAGAAATTCAATATCAGGAATCAAACTAAGAACAAACAAAAGCTGAAGAAATTCAAAATTCTTCTTTAAGATCATTAAGTTTTTTGAAAAAGATTTCCAGTCGATTATTGAACTCTTTAAAAGCAGACTTCAATTCAAAAGGATACGCAGGGGAAGCAAATTGTATGTTTCAAATTTTCCAAGTCTTCTCTCGATCCTAAATTTCTTCTATCCTGCCTCCGTCCATCATCTAATACATTACATAGAAGTCATAAAAATCGTAGTAGAACCCCCTTATTGGTAAAACTACCCCTTAATTTCATCGTCTAAACTCGGTTTTTTTTTCTTGTTGAGCTTACAGGTTTGAGGGTTTACGCGGCTTTTACAGAGGTATCACAGCAAACGTGTTGAAAAATGCCCCTGCCGCTTCAATTACCTTCATTGTCTA</genome_strand>
        <mrna_strand>TCAACTATTTCATGGGGTTTATATTTTTTCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAGCAAGGCTAAGCAAAGGTATCTAAGAAACAGGGAGGAGCTGAGTCCTGGCCTTCACCTTGCTTCAGCTGCAGAAGCAGGAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCTTTGCACCAACCCCATTTGGCTTGTGAAAACAAGATTGCAACTTCAGACTCCTAATCAGATTCGTCCATACACCGGATTTCATG....................................................................................................................................................................................................................................................................................................ATGCTTTAAGAACGATAATCAAAGAAGAAGGATGGAGGGCACTGTACAAGGGGCTTATGCCAAGCCTATTTCTG............................................................................................................................................................................................................ATTACACATGGTGCTATTCAGTTCACGGCATATGAGGAATTCCGCAAAGTCATTCTTAGCTCGAAAGCTCAGGAGAATGAAAACCCTCTTGCCACAGCTGCTGACTTGTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCAGTTGACTATGCAACACTAGGAGCTTCTTCTAAGTTGGCAGCCACTCTTACAACATACCCATTTCAG...............................................................................................................................................................................GTTGTCCGATCTCGATTGCAG..........................................................................................................................CAACGACCAAGTACGACTGGAGTTCCAAGATACATGGATAGCTGGCATGTTGTGAAGGAAACTGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGGGTTTACGCGGCTTTTACAGAGGTATCACAACAAACGTGTTGAAAAATGCCCCTGCCCCTTCAATTACCTTCATTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E398797" ref_strand="+" ref_description="SGN-E398797 [TUS-41-H8]">
      <seq>tcaactatttcatggggtttatattttttcttttatagcaaggctaagcaaaggtatctaagaaacagggaggagctgagtcctggccttcaccttgcttcagctgcagaagcaggagcgctggtctgtctttgcaccaaccccatttggcttgtgaaaacaagattgcaacttcagactcctaatcagattcgtccatacaccggatttcatgatgctttaagaacgataatcaaagaagaaggatggagggcactgtacaaggggcttatgccaagcctatttctgattacacatggtgctattcagttcacggcatatgaggaattccgcaaagtcattcttagctcgaaagctcaggagaatgaaaaccctcttgccacagctgctgacttgttggattcagttgactatgcaacactaggagcttcttctaagttggcagccactcttacaacatacccatttcaagttgtccgatctcaattgcagccacgaccaagtactactggagttccaagatacatggatagctggcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="27657" stop="32123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27957" g_stop="27988" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27989" i_stop="29050" i_length="1062">
            <donor d_prob="0.416" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29051" g_stop="29141" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="123" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29142" i_stop="29705" i_length="564">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29706" g_stop="29796" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="214" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29797" i_stop="30088" i_length="292">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30089" g_stop="30162" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="288" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30163" i_stop="30366" i_length="204">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30367" g_stop="30477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="399" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30478" i_stop="31383" i_length="906">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31384" g_stop="31455" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="471" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31456" i_stop="31630" i_length="175">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31631" g_stop="31651" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="492" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31652" i_stop="31773" i_length="122">
            <donor d_prob="0.906" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31774" g_stop="31823" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="542" r_length="50" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E398797" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27957" e_stop="27988"/>
          <exon e_start="29051" e_stop="29141"/>
          <exon e_start="29706" e_stop="29796"/>
          <exon e_start="30089" e_stop="30162"/>
          <exon e_start="30367" e_stop="30477"/>
          <exon e_start="31384" e_stop="31455"/>
          <exon e_start="31631" e_stop="31651"/>
          <exon e_start="31774" e_stop="31823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTATTTCATGGGGTTTATATTTTTTCTTGTAAGTAACATCTTTTTCTTTTGTTGACAAAGCTCTAGTAAGTAGCATCTTTTGTCATTTAGCTTACCGAGAACATGACCTTAGATAGGGGGATATAGAGGGTCGTGGATTAGGGTGACGATTAGTTAGTAGTTGAGTATTGTCTCACTTTCCGGTGGATAAACTTGGTGGTAATTTGGAGCACCGTATCCACGTCTCCTTTCATATCAGTAGTATGAGTATTATTCTCGTTGCTTTTGTTCGTCGATTTTTGTTATCATTTGTTGATTTTGGTTCTGGTTTATTATTTAGCTGTGGTTACTGTTCCTTTAAGTCAGAATGCTATGTAATGCTTTCCTATTATTTGCCACAGCTTCTTCACTTTCGTATTTTATGTGTTCATAACTGCTTTGGGATGCTTTCCCTTTCTATATTTTCTTTTCTTTTTCGTTCTTTATCTTTTCTTTATTTGAGCCAGGGGGTCGAATGAAAACAATCTCTCTACCTTCACAAGGTAGGGGTAAGGTTTGCACACACACTATCCTCTCCAGACCCCACTTGTGAGATTACACTAGTATTATCTGAGGAGCGCTTAAGCCCTGAAGCAAGGCTCAAAATGTGTTGAGCACTTCGCTGGGCTTAATGTGTGCTTCAACGTCATCATTAGGGTTCTAAGCATGCTTTCTCTTGCCAATGAGCCTCTTCTGAAGAGGCTATATTTAACAATTGATACCGTAATTTTTTCAATTTCTTTGTTCATATATTTGTCATTCATGCTTATAATTATTAGTCTTGGACTAAACATTTATTTTTGCATTTTTTGTCCATTTGCACCTTTTCTCATTAAAGACCACACTTTGTTTGCGCTTAAAGCCCCAACAGACCTTAGAGCTTTTTGTTTTTTATAGCACAGACATACATTGGGTTTGTTGTTGTTTTTGGGATTGTTTGTAAGAAACAATGTCGCCCTGTAAGAAGCAACCAACATATTAGGTTGCTTTCACTTTGATGCTTCTTACATTTCTAGCTTGAGAGACATCTTTCTCTAACTGTAACATCTTTTTTGGAATTTCCTTTGCGTAGTTATAGCAAGGCTAAGCAAAGGTATCTAAGAAACAGGGAGGAGCTGAGTCCTGGCCTTCACCTTGCTTCAGCTGCAGAAGCAGGAGCGCTGGTCAGTAATCAAATTTCTGATGCTTTAATGAAAGAACAATGTACTTCACATGTTCAAATGTTCAGCACTAATTGACCAGTTTTTGGCAGGAGTGTAAAATGTAGATAGTTGAATGTGATTCTTTATTTGTTGTTGTAGTCCTTGTAGGAGTGCAATTGTAGTTGGCTTGCTGGTGACGAATCCCTTACTTTTACTGTTGATAAAACTTAAAATTGTGACCAAAGTGAAATCTCTTTTTTCAGTGGAAGGCAAGGTCGAGTAATAAACTTGCTGTTTTGGATTCCAACATAAAAAGGAAGTTACTGATTCCCATCATTGGCAAACCACCCATTAGGTGTTAGTTAAATATAGGAACTGGAGAACCTTGTAGACAAACGAATTTGATTGTGTTGATCTTTTTGTGACAACCTTTTCCCCCCTTTATCAGTTCTGATGACAACAGATTGATGACTTATTATTCAGGTGGACAAAATATGTGGCTTGCTTATTTCAGTAACTTTAAGCACATCCTGTAATGTTGCAGATTATGTCATATCTTAAAAGGTGTTTTTTGTTGGAATTCAGGTCTGTCTTTGCACCAACCCCATTTGGCTTGTGAAAACAAGATTGCAACTTCAGACTCCTAATCAGATTCGTCCATACACCGGATTTCATGGTCTGCTTCACCCTCGTAGTAACTTGTCAACATCTTTTTCATTGTGCTTTCATCTAACTTTGAGCACTCTAGGACTACTTCTTTCCATCTTAATTTCATATAAGAATTGTACCTTTATTTCTGCAATTTTGTGGTTCTATAGTTGTGTGTCCTCTTTTTGTTTACTGAGGTTCTATTGCAACTTCTGCTCTCTTCTGTATGTGCATGCACATTCAGTTTTCTGACTAGCTTCTTTTGTATTTACTTTTCTACATATTAACTTCATAGGAACTTTTTTGTATATGGATATCAGATGCTTTAAGAACGATAATCAAAGAAGAAGGATGGAGGGCACTGTACAAGGGGCTTATGCCAAGCCTATTTCTGGTTAGAATTGCATTCTCTTCCATTCTTCCCCATTATCTCATCCTGTAAATGAATTTGATCTTATCATGACATAATCTTTTCTAAGTTACCCATCATAGCATACCTAACTTTTTGGATCGATTATCTGTACAATACACAACAAATTGAATGCTTAAGTGTCACCATTCATTCATGAAACACGCTGGTCTGTTGTTGCTTAAGCAGATTACACATGGTGCTATTCAGTTCACGGCATATGAGGAATTCCGCAAAGTCATTCTTAGCTCGAAAGCTCAGGAGAATGAAAACCCTCTTGCCACAGCTGCTGACTTGTTGGTGAGGCTCTAAACCAATGTGTATTGCTTTCTTTGTATGCAATCAACTCCATAGATGTTTTAATCTTCGGATGACCAGCAAATTGATCCCATTGTGTATTATTAGATATTGGAATTCAGATGTGCCTAGATGAATAAGAATGAGTTCAGGTTGGACAGGAATTTTTTTAAGTTAGTGGGCAAATGGCACAGATGAGAATATGCAGTCCAACTCTTAGTATTATGCGCTTTCATTCCTCATTGTTTCGTCGTGTTACTTGTGCAGAAACATTAAGTAGGTGTCCTAGGAAATCTTGGAGGCAGAAACTTTTCAAGCCTTTTCTCGTTGAGCAACTAAGATATTATTCATATATCATGTCTACAATTATCCTAAGGCACATAAGGTTTCTTTTTCAGTCCCTTAACAACTGTATCTACCTTATTTACTGCATCAGAGTGGCACTAGACTATCCAACTCCTTCCCTCCCCATTAAAAGATAAATATAATTAGGAAAAAGGAAAAGAGAAAAAACTACTTGAGTAAAAGTAAAAGGGGATATTTTTCTTTAGATAAGCAGATCCGAGTGAAGAATGATTCAATTATTTTCCAAACTAACTATAAGGTTCTTGGTGTTTTTTTATGTGGTGAGAGGTGATTTATTATGAACCACTGTATTTTTTTAATTTTTTTTTTCTTAAAAGCAAGCAGATTTCATTATTGCTCTCGATGTAAATGGAAAAGAATTGGTTGTACCATGTCTAGAGGTTGATCATTACTCAAGAACACTATCAGATATGAATGATATAGTGGTCACTGTTATGATTAGTTTTCTTCATATGAATACTTTGTTGTAGAAAGTTGACCACTTCAGTTCCCAATAAGAGGGAACATTACACCTCAGTATTTGCTCTTACATTTCTTTCACAGGATTCAGTTGACTATGCAACACTAGGAGCTTCTTCTAAGTTGGCAGCCACTCTTACAACATACCCATTTCAGGTATGTTAGGGGTGTGGTAAGTTTGTTCTTATTCTATTATTGGGAATAAGGATTCGGGGAAATTTGAGCATTATGCAGCACTCATCTCCATGTGCCAATTTGTTCTAACAATCTTACGCCGTGCTCCCTCGCTTTTCTCATTAACTAATTATGTATTTATATGAAACCTTTTCAGGTTGTCCGATCTCGATTGCAGGTAACTGCCTTTCGTGTTACCACTTTACGTGACACTTGATACAACTCTTCTCAGTAGACAAGCATCTAGTGGTGATTTTAATTTTCTGTAACGTAGTAAATGGTCTATCTTCTCTCTAACAGCAACGACCAAGTACGACTGGAGTTCCAAGATACATGGATAGCTGGCATGT</genome_strand>
        <mrna_strand>TCAACTATTTCATGGGGTTTATATTTTTTCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAGCAAGGCTAAGCAAAGGTATCTAAGAAACAGGGAGGAGCTGAGTCCTGGCCTTCACCTTGCTTCAGCTGCAGAAGCAGGAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCTTTGCACCAACCCCATTTGGCTTGTGAAAACAAGATTGCAACTTCAGACTCCTAATCAGATTCGTCCATACACCGGATTTCATG....................................................................................................................................................................................................................................................................................................ATGCTTTAAGAACGATAATCAAAGAAGAAGGATGGAGGGCACTGTACAAGGGGCTTATGCCAAGCCTATTTCTG............................................................................................................................................................................................................ATTACACATGGTGCTATTCAGTTCACGGCATATGAGGAATTCCGCAAAGTCATTCTTAGCTCGAAAGCTCAGGAGAATGAAAACCCTCTTGCCACAGCTGCTGACTTGTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCAGTTGACTATGCAACACTAGGAGCTTCTTCTAAGTTGGCAGCCACTCTTACAACATACCCATTTCAA...............................................................................................................................................................................GTTGTCCGATCTCAATTGCAG..........................................................................................................................CCACGACCAAGTACTACTGGAGTTCCAAGATACATGGATAGCTGGCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394200" ref_strand="+" ref_description="SGN-E394200 [TUS-42-H8]">
      <seq>tcaactatttcatggggtttatattttttcttttatagcaaggctaagcaaaggtatctaagaaacagggaggagctgagtcctggccttcaccttgcttcagctgcagaagcaggagcgctggtctgtctttgcaccaaccccatttggcttgtgaaaacaagattgcaacttcagactcctaatcagattcgtccatacaccggatttcatgatgctttaagaacgataatcaaagaagaaggatggagggcactgtacaaggggcttatgccaagcctatttctgattacacatggtgctattcagttcacggcatatgaggaattccgcaaagtcattcttagctcgaaagctcaggagaatgaaaaccctcttgccacagctgctgacttgttggattcagttgactatgcaacactaggagcttcttctaagttggcagccactcttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="27657" stop="31740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27957" g_stop="27988" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27989" i_stop="29050" i_length="1062">
            <donor d_prob="0.416" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29051" g_stop="29141" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="123" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29142" i_stop="29705" i_length="564">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29706" g_stop="29796" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="214" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29797" i_stop="30088" i_length="292">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30089" g_stop="30162" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="288" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30163" i_stop="30366" i_length="204">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30367" g_stop="30477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="399" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30478" i_stop="31383" i_length="906">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31384" g_stop="31440" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="456" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E394200" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27957" e_stop="27988"/>
          <exon e_start="29051" e_stop="29141"/>
          <exon e_start="29706" e_stop="29796"/>
          <exon e_start="30089" e_stop="30162"/>
          <exon e_start="30367" e_stop="30477"/>
          <exon e_start="31384" e_stop="31440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTATTTCATGGGGTTTATATTTTTTCTTGTAAGTAACATCTTTTTCTTTTGTTGACAAAGCTCTAGTAAGTAGCATCTTTTGTCATTTAGCTTACCGAGAACATGACCTTAGATAGGGGGATATAGAGGGTCGTGGATTAGGGTGACGATTAGTTAGTAGTTGAGTATTGTCTCACTTTCCGGTGGATAAACTTGGTGGTAATTTGGAGCACCGTATCCACGTCTCCTTTCATATCAGTAGTATGAGTATTATTCTCGTTGCTTTTGTTCGTCGATTTTTGTTATCATTTGTTGATTTTGGTTCTGGTTTATTATTTAGCTGTGGTTACTGTTCCTTTAAGTCAGAATGCTATGTAATGCTTTCCTATTATTTGCCACAGCTTCTTCACTTTCGTATTTTATGTGTTCATAACTGCTTTGGGATGCTTTCCCTTTCTATATTTTCTTTTCTTTTTCGTTCTTTATCTTTTCTTTATTTGAGCCAGGGGGTCGAATGAAAACAATCTCTCTACCTTCACAAGGTAGGGGTAAGGTTTGCACACACACTATCCTCTCCAGACCCCACTTGTGAGATTACACTAGTATTATCTGAGGAGCGCTTAAGCCCTGAAGCAAGGCTCAAAATGTGTTGAGCACTTCGCTGGGCTTAATGTGTGCTTCAACGTCATCATTAGGGTTCTAAGCATGCTTTCTCTTGCCAATGAGCCTCTTCTGAAGAGGCTATATTTAACAATTGATACCGTAATTTTTTCAATTTCTTTGTTCATATATTTGTCATTCATGCTTATAATTATTAGTCTTGGACTAAACATTTATTTTTGCATTTTTTGTCCATTTGCACCTTTTCTCATTAAAGACCACACTTTGTTTGCGCTTAAAGCCCCAACAGACCTTAGAGCTTTTTGTTTTTTATAGCACAGACATACATTGGGTTTGTTGTTGTTTTTGGGATTGTTTGTAAGAAACAATGTCGCCCTGTAAGAAGCAACCAACATATTAGGTTGCTTTCACTTTGATGCTTCTTACATTTCTAGCTTGAGAGACATCTTTCTCTAACTGTAACATCTTTTTTGGAATTTCCTTTGCGTAGTTATAGCAAGGCTAAGCAAAGGTATCTAAGAAACAGGGAGGAGCTGAGTCCTGGCCTTCACCTTGCTTCAGCTGCAGAAGCAGGAGCGCTGGTCAGTAATCAAATTTCTGATGCTTTAATGAAAGAACAATGTACTTCACATGTTCAAATGTTCAGCACTAATTGACCAGTTTTTGGCAGGAGTGTAAAATGTAGATAGTTGAATGTGATTCTTTATTTGTTGTTGTAGTCCTTGTAGGAGTGCAATTGTAGTTGGCTTGCTGGTGACGAATCCCTTACTTTTACTGTTGATAAAACTTAAAATTGTGACCAAAGTGAAATCTCTTTTTTCAGTGGAAGGCAAGGTCGAGTAATAAACTTGCTGTTTTGGATTCCAACATAAAAAGGAAGTTACTGATTCCCATCATTGGCAAACCACCCATTAGGTGTTAGTTAAATATAGGAACTGGAGAACCTTGTAGACAAACGAATTTGATTGTGTTGATCTTTTTGTGACAACCTTTTCCCCCCTTTATCAGTTCTGATGACAACAGATTGATGACTTATTATTCAGGTGGACAAAATATGTGGCTTGCTTATTTCAGTAACTTTAAGCACATCCTGTAATGTTGCAGATTATGTCATATCTTAAAAGGTGTTTTTTGTTGGAATTCAGGTCTGTCTTTGCACCAACCCCATTTGGCTTGTGAAAACAAGATTGCAACTTCAGACTCCTAATCAGATTCGTCCATACACCGGATTTCATGGTCTGCTTCACCCTCGTAGTAACTTGTCAACATCTTTTTCATTGTGCTTTCATCTAACTTTGAGCACTCTAGGACTACTTCTTTCCATCTTAATTTCATATAAGAATTGTACCTTTATTTCTGCAATTTTGTGGTTCTATAGTTGTGTGTCCTCTTTTTGTTTACTGAGGTTCTATTGCAACTTCTGCTCTCTTCTGTATGTGCATGCACATTCAGTTTTCTGACTAGCTTCTTTTGTATTTACTTTTCTACATATTAACTTCATAGGAACTTTTTTGTATATGGATATCAGATGCTTTAAGAACGATAATCAAAGAAGAAGGATGGAGGGCACTGTACAAGGGGCTTATGCCAAGCCTATTTCTGGTTAGAATTGCATTCTCTTCCATTCTTCCCCATTATCTCATCCTGTAAATGAATTTGATCTTATCATGACATAATCTTTTCTAAGTTACCCATCATAGCATACCTAACTTTTTGGATCGATTATCTGTACAATACACAACAAATTGAATGCTTAAGTGTCACCATTCATTCATGAAACACGCTGGTCTGTTGTTGCTTAAGCAGATTACACATGGTGCTATTCAGTTCACGGCATATGAGGAATTCCGCAAAGTCATTCTTAGCTCGAAAGCTCAGGAGAATGAAAACCCTCTTGCCACAGCTGCTGACTTGTTGGTGAGGCTCTAAACCAATGTGTATTGCTTTCTTTGTATGCAATCAACTCCATAGATGTTTTAATCTTCGGATGACCAGCAAATTGATCCCATTGTGTATTATTAGATATTGGAATTCAGATGTGCCTAGATGAATAAGAATGAGTTCAGGTTGGACAGGAATTTTTTTAAGTTAGTGGGCAAATGGCACAGATGAGAATATGCAGTCCAACTCTTAGTATTATGCGCTTTCATTCCTCATTGTTTCGTCGTGTTACTTGTGCAGAAACATTAAGTAGGTGTCCTAGGAAATCTTGGAGGCAGAAACTTTTCAAGCCTTTTCTCGTTGAGCAACTAAGATATTATTCATATATCATGTCTACAATTATCCTAAGGCACATAAGGTTTCTTTTTCAGTCCCTTAACAACTGTATCTACCTTATTTACTGCATCAGAGTGGCACTAGACTATCCAACTCCTTCCCTCCCCATTAAAAGATAAATATAATTAGGAAAAAGGAAAAGAGAAAAAACTACTTGAGTAAAAGTAAAAGGGGATATTTTTCTTTAGATAAGCAGATCCGAGTGAAGAATGATTCAATTATTTTCCAAACTAACTATAAGGTTCTTGGTGTTTTTTTATGTGGTGAGAGGTGATTTATTATGAACCACTGTATTTTTTTAATTTTTTTTTTCTTAAAAGCAAGCAGATTTCATTATTGCTCTCGATGTAAATGGAAAAGAATTGGTTGTACCATGTCTAGAGGTTGATCATTACTCAAGAACACTATCAGATATGAATGATATAGTGGTCACTGTTATGATTAGTTTTCTTCATATGAATACTTTGTTGTAGAAAGTTGACCACTTCAGTTCCCAATAAGAGGGAACATTACACCTCAGTATTTGCTCTTACATTTCTTTCACAGGATTCAGTTGACTATGCAACACTAGGAGCTTCTTCTAAGTTGGCAGCCACTCTTACA</genome_strand>
        <mrna_strand>TCAACTATTTCATGGGGTTTATATTTTTTCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAGCAAGGCTAAGCAAAGGTATCTAAGAAACAGGGAGGAGCTGAGTCCTGGCCTTCACCTTGCTTCAGCTGCAGAAGCAGGAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCTTTGCACCAACCCCATTTGGCTTGTGAAAACAAGATTGCAACTTCAGACTCCTAATCAGATTCGTCCATACACCGGATTTCATG....................................................................................................................................................................................................................................................................................................ATGCTTTAAGAACGATAATCAAAGAAGAAGGATGGAGGGCACTGTACAAGGGGCTTATGCCAAGCCTATTTCTG............................................................................................................................................................................................................ATTACACATGGTGCTATTCAGTTCACGGCATATGAGGAATTCCGCAAAGTCATTCTTAGCTCGAAAGCTCAGGAGAATGAAAACCCTCTTGCCACAGCTGCTGACTTGTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCAGTTGACTATGCAACACTAGGAGCTTCTTCTAAGTTGGCAGCCACTCTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232062" ref_strand="+" ref_description="SGN-E232062 [cLED-7-F21]">
      <seq>caactatttcatggggtttatattttttcttttatagcaaggctaagcaaaggtatctaagaaacagggaggagctgagtcctggccttcaccttgcttcagctgcagaagcaggagcgctggtctgtctttgcaccaaccccatttggcttgtgaaaacaagattgcaacttcagactcctaatcagattcgtccatacaccggatttcatgatgctttaagaacgataatcaaagaagaaggatggagggcactgtacaaggggcttatgccaagcctatttctgattacacatggtgctattcagttcacggcatatgaggaattccgcaaagtcattcttagctcgaaagctcaggagaatgaaaaccctcttgccacagctgctgacttgttggattcagttgactatgcaacactaggagcttcttctaagttggcagccactcttacaacatacccatttcaagttgtccgatctcgattgcagcaacgaccaagtacgactggagttccaagatacatggatagctggcatgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="27658" stop="32126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27958" g_stop="27988" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27989" i_stop="29050" i_length="1062">
            <donor d_prob="0.416" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29051" g_stop="29141" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="122" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29142" i_stop="29705" i_length="564">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29706" g_stop="29796" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="213" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29797" i_stop="30088" i_length="292">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30089" g_stop="30162" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="287" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30163" i_stop="30366" i_length="204">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30367" g_stop="30477" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="398" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30478" i_stop="31383" i_length="906">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31384" g_stop="31455" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="470" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31456" i_stop="31630" i_length="175">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31631" g_stop="31651" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="491" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31652" i_stop="31773" i_length="122">
            <donor d_prob="0.906" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31774" g_stop="31826" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="544" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E232062" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27958" e_stop="27988"/>
          <exon e_start="29051" e_stop="29141"/>
          <exon e_start="29706" e_stop="29796"/>
          <exon e_start="30089" e_stop="30162"/>
          <exon e_start="30367" e_stop="30477"/>
          <exon e_start="31384" e_stop="31455"/>
          <exon e_start="31631" e_stop="31651"/>
          <exon e_start="31774" e_stop="31826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTATTTCATGGGGTTTATATTTTTTCTTGTAAGTAACATCTTTTTCTTTTGTTGACAAAGCTCTAGTAAGTAGCATCTTTTGTCATTTAGCTTACCGAGAACATGACCTTAGATAGGGGGATATAGAGGGTCGTGGATTAGGGTGACGATTAGTTAGTAGTTGAGTATTGTCTCACTTTCCGGTGGATAAACTTGGTGGTAATTTGGAGCACCGTATCCACGTCTCCTTTCATATCAGTAGTATGAGTATTATTCTCGTTGCTTTTGTTCGTCGATTTTTGTTATCATTTGTTGATTTTGGTTCTGGTTTATTATTTAGCTGTGGTTACTGTTCCTTTAAGTCAGAATGCTATGTAATGCTTTCCTATTATTTGCCACAGCTTCTTCACTTTCGTATTTTATGTGTTCATAACTGCTTTGGGATGCTTTCCCTTTCTATATTTTCTTTTCTTTTTCGTTCTTTATCTTTTCTTTATTTGAGCCAGGGGGTCGAATGAAAACAATCTCTCTACCTTCACAAGGTAGGGGTAAGGTTTGCACACACACTATCCTCTCCAGACCCCACTTGTGAGATTACACTAGTATTATCTGAGGAGCGCTTAAGCCCTGAAGCAAGGCTCAAAATGTGTTGAGCACTTCGCTGGGCTTAATGTGTGCTTCAACGTCATCATTAGGGTTCTAAGCATGCTTTCTCTTGCCAATGAGCCTCTTCTGAAGAGGCTATATTTAACAATTGATACCGTAATTTTTTCAATTTCTTTGTTCATATATTTGTCATTCATGCTTATAATTATTAGTCTTGGACTAAACATTTATTTTTGCATTTTTTGTCCATTTGCACCTTTTCTCATTAAAGACCACACTTTGTTTGCGCTTAAAGCCCCAACAGACCTTAGAGCTTTTTGTTTTTTATAGCACAGACATACATTGGGTTTGTTGTTGTTTTTGGGATTGTTTGTAAGAAACAATGTCGCCCTGTAAGAAGCAACCAACATATTAGGTTGCTTTCACTTTGATGCTTCTTACATTTCTAGCTTGAGAGACATCTTTCTCTAACTGTAACATCTTTTTTGGAATTTCCTTTGCGTAGTTATAGCAAGGCTAAGCAAAGGTATCTAAGAAACAGGGAGGAGCTGAGTCCTGGCCTTCACCTTGCTTCAGCTGCAGAAGCAGGAGCGCTGGTCAGTAATCAAATTTCTGATGCTTTAATGAAAGAACAATGTACTTCACATGTTCAAATGTTCAGCACTAATTGACCAGTTTTTGGCAGGAGTGTAAAATGTAGATAGTTGAATGTGATTCTTTATTTGTTGTTGTAGTCCTTGTAGGAGTGCAATTGTAGTTGGCTTGCTGGTGACGAATCCCTTACTTTTACTGTTGATAAAACTTAAAATTGTGACCAAAGTGAAATCTCTTTTTTCAGTGGAAGGCAAGGTCGAGTAATAAACTTGCTGTTTTGGATTCCAACATAAAAAGGAAGTTACTGATTCCCATCATTGGCAAACCACCCATTAGGTGTTAGTTAAATATAGGAACTGGAGAACCTTGTAGACAAACGAATTTGATTGTGTTGATCTTTTTGTGACAACCTTTTCCCCCCTTTATCAGTTCTGATGACAACAGATTGATGACTTATTATTCAGGTGGACAAAATATGTGGCTTGCTTATTTCAGTAACTTTAAGCACATCCTGTAATGTTGCAGATTATGTCATATCTTAAAAGGTGTTTTTTGTTGGAATTCAGGTCTGTCTTTGCACCAACCCCATTTGGCTTGTGAAAACAAGATTGCAACTTCAGACTCCTAATCAGATTCGTCCATACACCGGATTTCATGGTCTGCTTCACCCTCGTAGTAACTTGTCAACATCTTTTTCATTGTGCTTTCATCTAACTTTGAGCACTCTAGGACTACTTCTTTCCATCTTAATTTCATATAAGAATTGTACCTTTATTTCTGCAATTTTGTGGTTCTATAGTTGTGTGTCCTCTTTTTGTTTACTGAGGTTCTATTGCAACTTCTGCTCTCTTCTGTATGTGCATGCACATTCAGTTTTCTGACTAGCTTCTTTTGTATTTACTTTTCTACATATTAACTTCATAGGAACTTTTTTGTATATGGATATCAGATGCTTTAAGAACGATAATCAAAGAAGAAGGATGGAGGGCACTGTACAAGGGGCTTATGCCAAGCCTATTTCTGGTTAGAATTGCATTCTCTTCCATTCTTCCCCATTATCTCATCCTGTAAATGAATTTGATCTTATCATGACATAATCTTTTCTAAGTTACCCATCATAGCATACCTAACTTTTTGGATCGATTATCTGTACAATACACAACAAATTGAATGCTTAAGTGTCACCATTCATTCATGAAACACGCTGGTCTGTTGTTGCTTAAGCAGATTACACATGGTGCTATTCAGTTCACGGCATATGAGGAATTCCGCAAAGTCATTCTTAGCTCGAAAGCTCAGGAGAATGAAAACCCTCTTGCCACAGCTGCTGACTTGTTGGTGAGGCTCTAAACCAATGTGTATTGCTTTCTTTGTATGCAATCAACTCCATAGATGTTTTAATCTTCGGATGACCAGCAAATTGATCCCATTGTGTATTATTAGATATTGGAATTCAGATGTGCCTAGATGAATAAGAATGAGTTCAGGTTGGACAGGAATTTTTTTAAGTTAGTGGGCAAATGGCACAGATGAGAATATGCAGTCCAACTCTTAGTATTATGCGCTTTCATTCCTCATTGTTTCGTCGTGTTACTTGTGCAGAAACATTAAGTAGGTGTCCTAGGAAATCTTGGAGGCAGAAACTTTTCAAGCCTTTTCTCGTTGAGCAACTAAGATATTATTCATATATCATGTCTACAATTATCCTAAGGCACATAAGGTTTCTTTTTCAGTCCCTTAACAACTGTATCTACCTTATTTACTGCATCAGAGTGGCACTAGACTATCCAACTCCTTCCCTCCCCATTAAAAGATAAATATAATTAGGAAAAAGGAAAAGAGAAAAAACTACTTGAGTAAAAGTAAAAGGGGATATTTTTCTTTAGATAAGCAGATCCGAGTGAAGAATGATTCAATTATTTTCCAAACTAACTATAAGGTTCTTGGTGTTTTTTTATGTGGTGAGAGGTGATTTATTATGAACCACTGTATTTTTTTAATTTTTTTTTTCTTAAAAGCAAGCAGATTTCATTATTGCTCTCGATGTAAATGGAAAAGAATTGGTTGTACCATGTCTAGAGGTTGATCATTACTCAAGAACACTATCAGATATGAATGATATAGTGGTCACTGTTATGATTAGTTTTCTTCATATGAATACTTTGTTGTAGAAAGTTGACCACTTCAGTTCCCAATAAGAGGGAACATTACACCTCAGTATTTGCTCTTACATTTCTTTCACAGGATTCAGTTGACTATGCAACACTAGGAGCTTCTTCTAAGTTGGCAGCCACTCTTACAACATACCCATTTCAGGTATGTTAGGGGTGTGGTAAGTTTGTTCTTATTCTATTATTGGGAATAAGGATTCGGGGAAATTTGAGCATTATGCAGCACTCATCTCCATGTGCCAATTTGTTCTAACAATCTTACGCCGTGCTCCCTCGCTTTTCTCATTAACTAATTATGTATTTATATGAAACCTTTTCAGGTTGTCCGATCTCGATTGCAGGTAACTGCCTTTCGTGTTACCACTTTACGTGACACTTGATACAACTCTTCTCAGTAGACAAGCATCTAGTGGTGATTTTAATTTTCTGTAACGTAGTAAATGGTCTATCTTCTCTCTAACAGCAACGACCAAGTACGACTGGAGTTCCAAGATACATGGATAGCTGGCATGTTGT</genome_strand>
        <mrna_strand>CAACTATTTCATGGGGTTTATATTTTTTCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAGCAAGGCTAAGCAAAGGTATCTAAGAAACAGGGAGGAGCTGAGTCCTGGCCTTCACCTTGCTTCAGCTGCAGAAGCAGGAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCTTTGCACCAACCCCATTTGGCTTGTGAAAACAAGATTGCAACTTCAGACTCCTAATCAGATTCGTCCATACACCGGATTTCATG....................................................................................................................................................................................................................................................................................................ATGCTTTAAGAACGATAATCAAAGAAGAAGGATGGAGGGCACTGTACAAGGGGCTTATGCCAAGCCTATTTCTG............................................................................................................................................................................................................ATTACACATGGTGCTATTCAGTTCACGGCATATGAGGAATTCCGCAAAGTCATTCTTAGCTCGAAAGCTCAGGAGAATGAAAACCCTCTTGCCACAGCTGCTGACTTGTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCAGTTGACTATGCAACACTAGGAGCTTCTTCTAAGTTGGCAGCCACTCTTACAACATACCCATTTCAA...............................................................................................................................................................................GTTGTCCGATCTCGATTGCAG..........................................................................................................................CAACGACCAAGTACGACTGGAGTTCCAAGATACATGGATAGCTGGCATGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377041" ref_strand="+" ref_description="SGN-E377041 [TUS-20-M21](-)">
      <seq>atacccatttcaggttgtccgatctcgattgcagcaacgaccaagtacgactggagttccaagatacatggatagctggcatgttgtgaaggaaactgcaaggtttgagggtttacgcggcttttacagaggtatcacagcaaacgtgttgaaaaatgcccctgccgcttcaattaccttcattgtctatgagaatgtcctaaacctgctaaaattgtctaggaaagagtattagttcttttacatcctttttgcctcccatttcttgttgtagcaattaggattctacaccattgaaactatttttggaagaagtatactctcagatttgacaggagtacaaaaatagaaacaagatatcattaaagagaatgtgaacaggagacaatataatggctggtgtggtgtaattgtactatatttctcgtctttgtaatttatgagaaaagaataatctttttagacttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="31318" stop="32979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31443" g_stop="31455" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31456" i_stop="31630" i_length="175">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31631" g_stop="31651" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="34" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31652" i_stop="31773" i_length="122">
            <donor d_prob="0.906" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31774" g_stop="31841" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="102" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31842" i_stop="32314" i_length="473">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32315" g_stop="32680" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="468" r_length="366" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="469" polyA_stop="478"/>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E377041" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31443" e_stop="31455"/>
          <exon e_start="31631" e_stop="31651"/>
          <exon e_start="31774" e_stop="31841"/>
          <exon e_start="32315" e_stop="32680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCCATTTCAGGTATGTTAGGGGTGTGGTAAGTTTGTTCTTATTCTATTATTGGGAATAAGGATTCGGGGAAATTTGAGCATTATGCAGCACTCATCTCCATGTGCCAATTTGTTCTAACAATCTTACGCCGTGCTCCCTCGCTTTTCTCATTAACTAATTATGTATTTATATGAAACCTTTTCAGGTTGTCCGATCTCGATTGCAGGTAACTGCCTTTCGTGTTACCACTTTACGTGACACTTGATACAACTCTTCTCAGTAGACAAGCATCTAGTGGTGATTTTAATTTTCTGTAACGTAGTAAATGGTCTATCTTCTCTCTAACAGCAACGACCAAGTACGACTGGAGTTCCAAGATACATGGATAGCTGGCATGTTGTGAAGGAAACTGCAAGGTCAGGATGTGTTTCAGCCTTATTTACAGCCTATGCACTTGATTAAATATACATGAACGCCATACACTAAGTTGCTCTATATTGAAATGTTTTCTGAATCTAATTGCAAGTTCATCGATTGCAACGGTTGCTGAAGAAATTCAATATCAGGAATCAAACTAAGAACAAACAAAAGCTGAAGAAATTCAAAATTCTTCTTTAAGATCATTAAGTTTTTTGAAAAAGATTTCCAGTCGATTATTGAACTCTTTAAAAGCAGACTTCAATTCAAAAGGATACGCAGGGGAAGCAAATTGTATGTTTCAAATTTTCCAAGTCTTCTCTCGATCCTAAATTTCTTCTATCCTGCCTCCGTCCATCATCTAATACATTACATAGAAGTCATAAAAATCGTAGTAGAACCCCCTTATTGGTAAAACTACCCCTTAATTTCATCGTCTAAACTCGGTTTTTTTTTCTTGTTGAGCTTACAGGTTTGAGGGTTTACGCGGCTTTTACAGAGGTATCACAGCAAACGTGTTGAAAAATGCCCCTGCCGCTTCAATTACCTTCATTGTCTATGAGAATGTCCTAAACCTGCTAAAATTGTCTAGGAAAGAGTATTAGTTCTTTTACATCCTTTTTGCCTCCCATTTCTTGTTGTAGCAATTAGGATTCTACACCATTGAAACTATTTTTGGAAGAAGTATACTCTCAGATTTGACAGGAGTACAAAAATAGAAACAAGATATCATTAAAGAGAATGTGAACAGGAGACAATATAATGGCTGGTGTGGTGTAATTGTACTATATTTCTCGTCTTTGTAATTTATGAGAAAAGAATAATCTTTTTAGACTTT</genome_strand>
        <mrna_strand>ATACCCATTTCAG...............................................................................................................................................................................GTTGTCCGATCTCGATTGCAG..........................................................................................................................CAACGACCAAGTACGACTGGAGTTCCAAGATACATGGATAGCTGGCATGTTGTGAAGGAAACTGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGGGTTTACGCGGCTTTTACAGAGGTATCACAGCAAACGTGTTGAAAAATGCCCCTGCCGCTTCAATTACCTTCATTGTCTATGAGAATGTCCTAAACCTGCTAAAATTGTCTAGGAAAGAGTATTAGTTCTTTTACATCCTTTTTGCCTCCCATTTCTTGTTGTAGCAATTAGGATTCTACACCATTGAAACTATTTTTGGAAGAAGTATACTCTCAGATTTGACAGGAGTACAAAAATAGAAACAAGATATCATTAAAGAGAATGTGAACAGGAGACAATATAATGGCTGGTGTGGTGTAATTGTACTATATTTCTCGTCTTTGTAATTTATGAGAAAAGAATAATCTTTTTAGACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392451" ref_strand="+" ref_description="SGN-E392451 [TUS-36-A4](-)">
      <seq>caacatacccccccccccccctccgatctcgattgcagcaacgaccaagtacgactggagttccaagatacatggatagctggcatgttgtgaaggaaactgcaaggtttgagggtttacgcggcttttacagaggtatcacagcaaacgtgttgaaaaatgcccctgccgcttcaattaccttcattgtctatgagaatgtcctaaacctgctaaaattgtctaggaaagagtattagttcttttacatcctttttgcctcccatttcttgttgtagcaattaggattctacaccattgaaactatttttggaagaagtatactctcagatttgacaggagtacaaaaatagaaacaagatatcattaaagagaatgtgaacaggagacaatataatggctggtgtggtgtaattgtactatatttctcgtctttgtaatttatgagaaaagaataatctttttagacttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="31462" stop="32979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31631" g_stop="31651" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="38" r_length="21" r_score="0.810"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31652" i_stop="31773" i_length="122">
            <donor d_prob="0.906" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31774" g_stop="31841" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="106" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31842" i_stop="32314" i_length="473">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32315" g_stop="32680" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="472" r_length="366" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="473" polyA_stop="483"/>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E392451" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31631" e_stop="31651"/>
          <exon e_start="31774" e_stop="31841"/>
          <exon e_start="32315" e_stop="32680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTCCGATCTCGATTGCAGGTAACTGCCTTTCGTGTTACCACTTTACGTGACACTTGATACAACTCTTCTCAGTAGACAAGCATCTAGTGGTGATTTTAATTTTCTGTAACGTAGTAAATGGTCTATCTTCTCTCTAACAGCAACGACCAAGTACGACTGGAGTTCCAAGATACATGGATAGCTGGCATGTTGTGAAGGAAACTGCAAGGTCAGGATGTGTTTCAGCCTTATTTACAGCCTATGCACTTGATTAAATATACATGAACGCCATACACTAAGTTGCTCTATATTGAAATGTTTTCTGAATCTAATTGCAAGTTCATCGATTGCAACGGTTGCTGAAGAAATTCAATATCAGGAATCAAACTAAGAACAAACAAAAGCTGAAGAAATTCAAAATTCTTCTTTAAGATCATTAAGTTTTTTGAAAAAGATTTCCAGTCGATTATTGAACTCTTTAAAAGCAGACTTCAATTCAAAAGGATACGCAGGGGAAGCAAATTGTATGTTTCAAATTTTCCAAGTCTTCTCTCGATCCTAAATTTCTTCTATCCTGCCTCCGTCCATCATCTAATACATTACATAGAAGTCATAAAAATCGTAGTAGAACCCCCTTATTGGTAAAACTACCCCTTAATTTCATCGTCTAAACTCGGTTTTTTTTTCTTGTTGAGCTTACAGGTTTGAGGGTTTACGCGGCTTTTACAGAGGTATCACAGCAAACGTGTTGAAAAATGCCCCTGCCGCTTCAATTACCTTCATTGTCTATGAGAATGTCCTAAACCTGCTAAAATTGTCTAGGAAAGAGTATTAGTTCTTTTACATCCTTTTTGCCTCCCATTTCTTGTTGTAGCAATTAGGATTCTACACCATTGAAACTATTTTTGGAAGAAGTATACTCTCAGATTTGACAGGAGTACAAAAATAGAAACAAGATATCATTAAAGAGAATGTGAACAGGAGACAATATAATGGCTGGTGTGGTGTAATTGTACTATATTTCTCGTCTTTGTAATTTATGAGAAAAGAATAATCTTTTTAGACTTT</genome_strand>
        <mrna_strand>CCCCTCCGATCTCGATTGCAG..........................................................................................................................CAACGACCAAGTACGACTGGAGTTCCAAGATACATGGATAGCTGGCATGTTGTGAAGGAAACTGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGGGTTTACGCGGCTTTTACAGAGGTATCACAGCAAACGTGTTGAAAAATGCCCCTGCCGCTTCAATTACCTTCATTGTCTATGAGAATGTCCTAAACCTGCTAAAATTGTCTAGGAAAGAGTATTAGTTCTTTTACATCCTTTTTGCCTCCCATTTCTTGTTGTAGCAATTAGGATTCTACACCATTGAAACTATTTTTGGAAGAAGTATACTCTCAGATTTGACAGGAGTACAAAAATAGAAACAAGATATCATTAAAGAGAATGTGAACAGGAGACAATATAATGGCTGGTGTGGTGTAATTGTACTATATTTCTCGTCTTTGTAATTTATGAGAAAAGAATAATCTTTTTAGACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E398184" ref_strand="+" ref_description="SGN-E398184 [TUS-41-H8](-)">
      <seq>caagtacgactggagttccaagatacatggatagttggcttgttgtgaaggaaactgcaaggtttgagggtttacgaaaaatttacagaggtatcacagcaaacgtgttgaaaaatgcccctgccgcttcaattaccttcattgtttatgagaatgtcctaaacctgctaaaattgtctaggaaagagtattagttcttttacatcctttttgcctcccatttcttgttgtagcaattaggattctacaccattgaaactatttttggaagaagtatactctcagatttgacaggagtacaaaaatagaaacaagatatcattaaagagaatgtgaacaggagacaatataatggctggtgtggtgtaattgtaaaaggtttctcgtctttgtaatttatgagaaaagaataatctttttagacttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="31481" stop="32979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31781" g_stop="31841" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31842" i_stop="32314" i_length="473">
            <donor d_prob="0.734" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32315" g_stop="32680" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="427" r_length="366" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="438"/>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E398184" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31781" e_stop="31841"/>
          <exon e_start="32315" e_stop="32680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTACGACTGGAGTTCCAAGATACATGGATAGCTGGCATGTTGTGAAGGAAACTGCAAGGTCAGGATGTGTTTCAGCCTTATTTACAGCCTATGCACTTGATTAAATATACATGAACGCCATACACTAAGTTGCTCTATATTGAAATGTTTTCTGAATCTAATTGCAAGTTCATCGATTGCAACGGTTGCTGAAGAAATTCAATATCAGGAATCAAACTAAGAACAAACAAAAGCTGAAGAAATTCAAAATTCTTCTTTAAGATCATTAAGTTTTTTGAAAAAGATTTCCAGTCGATTATTGAACTCTTTAAAAGCAGACTTCAATTCAAAAGGATACGCAGGGGAAGCAAATTGTATGTTTCAAATTTTCCAAGTCTTCTCTCGATCCTAAATTTCTTCTATCCTGCCTCCGTCCATCATCTAATACATTACATAGAAGTCATAAAAATCGTAGTAGAACCCCCTTATTGGTAAAACTACCCCTTAATTTCATCGTCTAAACTCGGTTTTTTTTTCTTGTTGAGCTTACAGGTTTGAGGGTTTACGCGGCTTTTACAGAGGTATCACAGCAAACGTGTTGAAAAATGCCCCTGCCGCTTCAATTACCTTCATTGTCTATGAGAATGTCCTAAACCTGCTAAAATTGTCTAGGAAAGAGTATTAGTTCTTTTACATCCTTTTTGCCTCCCATTTCTTGTTGTAGCAATTAGGATTCTACACCATTGAAACTATTTTTGGAAGAAGTATACTCTCAGATTTGACAGGAGTACAAAAATAGAAACAAGATATCATTAAAGAGAATGTGAACAGGAGACAATATAATGGCTGGTGTGGTGTAATTGTACTATATTTCTCGTCTTTGTAATTTATGAGAAAAGAATAATCTTTTTAGACTTT</genome_strand>
        <mrna_strand>CAAGTACGACTGGAGTTCCAAGATACATGGATAGTTGGCTTGTTGTGAAGGAAACTGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGGGTTTACGAAAAATTTACAGAGGTATCACAGCAAACGTGTTGAAAAATGCCCCTGCCGCTTCAATTACCTTCATTGTTTATGAGAATGTCCTAAACCTGCTAAAATTGTCTAGGAAAGAGTATTAGTTCTTTTACATCCTTTTTGCCTCCCATTTCTTGTTGTAGCAATTAGGATTCTACACCATTGAAACTATTTTTGGAAGAAGTATACTCTCAGATTTGACAGGAGTACAAAAATAGAAACAAGATATCATTAAAGAGAATGTGAACAGGAGACAATATAATGGCTGGTGTGGTGTAATTGTAAAAGGTTTCTCGTCTTTGTAATTTATGAGAAAAGAATAATCTTTTTAGACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E538395" ref_strand="+" ref_description="SGN-E538395 [TUS-57-J3]">
      <seq>agcaattccataacctaaggggccaaagtgtatgctagtaggcctaaaacctcacttccccaaccttggtacttctcccagacggcttaaacccgccgccgtaatcactatctccggcgccgttacaaagtccaagcagaagttcttatgctataagattctgtaatcatgaggtgctttaatcgatttatcaatcaattgctgtctcgccgttcaagaactatttccacatatcaaacaccttatgtgcattcacgaattccacagtccaagattcaaaatttatccaaaacccatttctacagcttcactaaatcgttaattagttcaaatttcacaacatcagctcaggagtctaagccggccccatccgagagagtatctgcgatagtcgatgcgatttcgggtctaacgttgctggaagtatcggatttgggggaggttctaaggaagaaaatgggtattgaagagatgcctgtaatggcaatgatgatgcctggaatgggatttagtgctggagggatgaagggaaagggtgcangagctgcgggaaagacggaggagaaggcggagaagactgtgtttgatctgaagcttgaagggggatttgatgccggggcaaagattaagattatcaaggaagtgagatcttttactgatctgggactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="33605" stop="34873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33905" g_stop="34573" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E538395" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33905" e_stop="34573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTCCATAACCTAAGGGGCCAAAGTGTATGCTAGTAGGCCTAAAACCTCACTTCCCCAACCTTGGTACTTCTCCCAGACGGCTTAAACCCGCCGCCGTAATCACTATCTCCGGCGCCGTTACAAAGTCCAAGCAGAAGTTCTTATGCTATAAGATTCTGTAATCATGAGGTGCTTTAATCGATTTATCAATCAATTGCTGTCTCGCCGTTCAAGAACTATTTCCACATATCAAACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCGTTAATTAGTTCAAATTTCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGAGATTTCGGGTCTAACGTTGCTGGAAGTATCGGATTTGGGGGAGGTTCTAAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGATTTAGTGCTGGAGGGATGAAGGGAAAGGGTGCAGGAGCTGCGGGAAAGACGGAGGAGAAGGCGGAGAAGACTGTGTTTGATCTGAAGCTTGAAGGGGGATTTGATGCCGGGGCAAAGATTAAGATTATCAAGGAAGTGAGATCTTTTACTGATCTGGGACTC</genome_strand>
        <mrna_strand>AGCAATTCCATAACCTAAGGGGCCAAAGTGTATGCTAGTAGGCCTAAAACCTCACTTCCCCAACCTTGGTACTTCTCCCAGACGGCTTAAACCCGCCGCCGTAATCACTATCTCCGGCGCCGTTACAAAGTCCAAGCAGAAGTTCTTATGCTATAAGATTCTGTAATCATGAGGTGCTTTAATCGATTTATCAATCAATTGCTGTCTCGCCGTTCAAGAACTATTTCCACATATCAAACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCGTTAATTAGTTCAAATTTCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGCGATTTCGGGTCTAACGTTGCTGGAAGTATCGGATTTGGGGGAGGTTCTAAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGATTTAGTGCTGGAGGGATGAAGGGAAAGGGTGCANGAGCTGCGGGAAAGACGGAGGAGAAGGCGGAGAAGACTGTGTTTGATCTGAAGCTTGAAGGGGGATTTGATGCCGGGGCAAAGATTAAGATTATCAAGGAAGTGAGATCTTTTACTGATCTGGGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268723" ref_strand="+" ref_description="SGN-E268723 [cLEM-16-N3]">
      <seq>gcaattccataacctaagagggccaaagtgtatgctagtaggcctaaaacctcacttccccaaccttggacttctcccagacagcttaaacccgccgccgtaatcactatctccggcgccgttacaaagtccaagcagaagttcttatgctataagattctgtaatcatgaagagctttaatcgatttatcaatcaattgctgtctcgccgttcaagaactatttccacatatcaaacaccttatgtgcattcacgaattccacagtccaagattcaaaatttatccaaaacccatttctacagcttcactaaatcgttaattagttcaaatttcacaacatcagctcaagagtctaagccggccccatccgagagagtatctgcgatagtcgatgcgatttcaggtctaacgttgctggaagtatcggatttgggggaggttctaaggaagaaaatgggtattgaagagatgcctgtaatggcaatgatgatgcctggaatgggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="33606" stop="34713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33906" g_stop="34413" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E268723" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33906" e_stop="34413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTCCATAACCTAAG-GGGCCAAAGTGTATGCTAGTAGGCCTAAAACCTCACTTCCCCAACCTTGGTACTTCTCCCAGACGGCTTAAACCCGCCGCCGTAATCACTATCTCCGGCGCCGTTACAAAGTCCAAGCAGAAGTTCTTATGCTATAAGATTCTGTAATCATGAGGTGCTTTAATCGATTTATCAATCAATTGCTGTCTCGCCGTTCAAGAACTATTTCCACATATCAAACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCGTTAATTAGTTCAAATTTCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGAGATTTCGGGTCTAACGTTGCTGGAAGTATCGGATTTGGGGGAGGTTCTAAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGATT</genome_strand>
        <mrna_strand>GCAATTCCATAACCTAAGAGGGCCAAAGTGTATGCTAGTAGGCCTAAAACCTCACTTCCCCAACCTTGG-ACTTCTCCCAGACAGCTTAAACCCGCCGCCGTAATCACTATCTCCGGCGCCGTTACAAAGTCCAAGCAGAAGTTCTTATGCTATAAGATTCTGTAATCATGAAGAGCTTTAATCGATTTATCAATCAATTGCTGTCTCGCCGTTCAAGAACTATTTCCACATATCAAACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCGTTAATTAGTTCAAATTTCACAACATCAGCTCAAGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGCGATTTCAGGTCTAACGTTGCTGGAAGTATCGGATTTGGGGGAGGTTCTAAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206889" ref_strand="+" ref_description="SGN-E206889 [cLEC-33-H4]">
      <seq>aggggccaaagtgtatgctagtaggcctaaaacctcacttccccaaccttggtacttctcccagacggcttaaacccgccgccgtaatcactatctccggcgccgttacaaagtccaagcagaagttcttatgctataagattctgtaatcatgaggtgctttaatcgatttatcaatcaattgctgtctcgccgttcaagaactatttccacatatcaaacaccttatgtgcattcacgaattccacagtccaagattcaaaatttatccaaaacccatttctacagcttcactaaatcgttaattagttcaaatttcacaacatcagctcaggagtctaagccggccccatccgagagagtatctgcgatagtcgatgcgatttcgggtctaacgttgctggaagtatcggatttgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="33622" stop="34642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33922" g_stop="34342" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E206889" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33922" e_stop="34342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGCCAAAGTGTATGCTAGTAGGCCTAAAACCTCACTTCCCCAACCTTGGTACTTCTCCCAGACGGCTTAAACCCGCCGCCGTAATCACTATCTCCGGCGCCGTTACAAAGTCCAAGCAGAAGTTCTTATGCTATAAGATTCTGTAATCATGAGGTGCTTTAATCGATTTATCAATCAATTGCTGTCTCGCCGTTCAAGAACTATTTCCACATATCAAACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCGTTAATTAGTTCAAATTTCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGAGATTTCGGGTCTAACGTTGCTGGAAGTATCGGATTTGGGG</genome_strand>
        <mrna_strand>AGGGGCCAAAGTGTATGCTAGTAGGCCTAAAACCTCACTTCCCCAACCTTGGTACTTCTCCCAGACGGCTTAAACCCGCCGCCGTAATCACTATCTCCGGCGCCGTTACAAAGTCCAAGCAGAAGTTCTTATGCTATAAGATTCTGTAATCATGAGGTGCTTTAATCGATTTATCAATCAATTGCTGTCTCGCCGTTCAAGAACTATTTCCACATATCAAACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCGTTAATTAGTTCAAATTTCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGCGATTTCGGGTCTAACGTTGCTGGAAGTATCGGATTTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724212" ref_strand="+" ref_description="SGN-E724212 [FC23BF11]">
      <seq>gggcggccaaatcggccgaattgaaggggccaaagtgcatgctagtaggcctaaaacctcacttccccaaccttggtacttctcccagacggcttaaacccgccgccgtaatcactatctccggcgccgttacaaagtccaagcagaagttcttatgctataagattctgtaatcatgaggtgctttaatcgatttatcaatcaattgctgtctcgccgttcaagaactatttccacatatcaaacaccttatgtgcattcacgaattccacagtccaagattcaaaatttatccaaaacccatttctacagcttcactaaatcgttaattagttcaaatttcacaacatcagctcaggagtctaagccggccccatccgagagagtatctgcgatagtcgatgagatttcgggtctaacgttgctggaagtatcggatttgggggaggttctaaggaagaaaatgggtattgaagagatgcctgtaatggcaatgatgatgcctggaatgggatttagtgctggagggatgaagggaaagggtgcaggagctgcgggaaagacggaggagaaggcggagaaaactgtgtttgatctgaagcttgaagggggatttgatgccggggcaaagattaagattatcaaggaagtgagatcttttactgatctgggactcaaggaggctaaggatttggtggaaaaggctccagctagtttgaagaaaggggttacgaaagaggaggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="33621" stop="34943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33924" g_stop="34643" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="746" r_length="720" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E724212" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33924" e_stop="34643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCCAAAGTGTATGCTAGTAGGCCTAAAACCTCACTTCCCCAACCTTGGTACTTCTCCCAGACGGCTTAAACCCGCCGCCGTAATCACTATCTCCGGCGCCGTTACAAAGTCCAAGCAGAAGTTCTTATGCTATAAGATTCTGTAATCATGAGGTGCTTTAATCGATTTATCAATCAATTGCTGTCTCGCCGTTCAAGAACTATTTCCACATATCAAACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCGTTAATTAGTTCAAATTTCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGAGATTTCGGGTCTAACGTTGCTGGAAGTATCGGATTTGGGGGAGGTTCTAAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGATTTAGTGCTGGAGGGATGAAGGGAAAGGGTGCAGGAGCTGCGGGAAAGACGGAGGAGAAGGCGGAGAAGACTGTGTTTGATCTGAAGCTTGAAGGGGGATTTGATGCCGGGGCAAAGATTAAGATTATCAAGGAAGTGAGATCTTTTACTGATCTGGGACTCAAGGAGGCTAAGGATTTGGTGGAAAAGGCTCCAGCTAGTTTGAAGAAAGGGGTTACGAAAGAGGAGGCTG</genome_strand>
        <mrna_strand>GGGCCAAAGTGCATGCTAGTAGGCCTAAAACCTCACTTCCCCAACCTTGGTACTTCTCCCAGACGGCTTAAACCCGCCGCCGTAATCACTATCTCCGGCGCCGTTACAAAGTCCAAGCAGAAGTTCTTATGCTATAAGATTCTGTAATCATGAGGTGCTTTAATCGATTTATCAATCAATTGCTGTCTCGCCGTTCAAGAACTATTTCCACATATCAAACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCGTTAATTAGTTCAAATTTCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGAGATTTCGGGTCTAACGTTGCTGGAAGTATCGGATTTGGGGGAGGTTCTAAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGATTTAGTGCTGGAGGGATGAAGGGAAAGGGTGCAGGAGCTGCGGGAAAGACGGAGGAGAAGGCGGAGAAAACTGTGTTTGATCTGAAGCTTGAAGGGGGATTTGATGCCGGGGCAAAGATTAAGATTATCAAGGAAGTGAGATCTTTTACTGATCTGGGACTCAAGGAGGCTAAGGATTTGGTGGAAAAGGCTCCAGCTAGTTTGAAGAAAGGGGTTACGAAAGAGGAGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710703" ref_strand="+" ref_description="SGN-E710703 [FA56BC02]">
      <seq>cgtttatgctagtaggcctaaaacctcacttccccaaccttggtacttctcccagacggcttaaacccgccgccgtaatcactatctccggcgccgttacaaagtccaagcagaagttcttatgctataagattctgtaatcatgaggtgctttaatcgatttatcaatcaattgctgtctcgccgttcaagaactatttccacatatcaaacaccttatgtgcattcacgaattccacagtccaagattcaaaatttatccaaaacccatttctacagcttcactaaatccttaattagttccaatttcaccacatcagctcaggagtctaagccggccccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="33632" stop="34575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33931" g_stop="34275" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E710703" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33931" e_stop="34275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTATGCTAGTAGGCCTAAAACCTCACTTCCCCAACCTTGGTACTTCTCCCAGACGGCTTAAACCCGCCGCCGTAATCACTATCTCCGGCGCCGTTACAAAGTCCAAGCAGAAGTTCTTATGCTATAAGATTCTGTAATCATGAGGTGCTTTAATCGATTTATCAATCAATTGCTGTCTCGCCGTTCAAGAACTATTTCCACATATCAAACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCGTTAATTAGTTCAAATTTCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATC</genome_strand>
        <mrna_strand>CGTTTATGCTAGTAGGCCTAAAACCTCACTTCCCCAACCTTGGTACTTCTCCCAGACGGCTTAAACCCGCCGCCGTAATCACTATCTCCGGCGCCGTTACAAAGTCCAAGCAGAAGTTCTTATGCTATAAGATTCTGTAATCATGAGGTGCTTTAATCGATTTATCAATCAATTGCTGTCTCGCCGTTCAAGAACTATTTCCACATATCAAACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCCTTAATTAGTTCCAATTTCACCACATCAGCTCAGGAGTCTAAGCCGGCCCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699092" ref_strand="+" ref_description="SGN-E699092 [FA08CF02]">
      <seq>cttaaacccgccgccgtaatcactatctccggcgccgttacaaagtccaagcagaagttcttatgctataagattctgtaatcatgaggtgctttaatcgatttatcaatcaattgctgtctcgccgttcaagaactatttccacatatcaaacaccttatgtgcattcacgaattccacagtccaagattcaaaatttatccaaaacccatttctacagcttcactaaatcgttaattagttcaaatttcacaacatcagctcaggagtctaagccggccccatccgagagagtatctgcgatagtcgatgagatttcgggtctaacgttgctggaagtatcggatttgggggaggttctaaggaagaaaatgggtattgaagagatgcctgtaatggcaatgatgatgcctggaatgggatttagtgctggagggatgaagggaaagggtgcaggagctgcgggaaagacggaggagaaggcggagaagactgtgtttgatctgaagcttgaagggggatttgatgcccggggcaaagattaccattatcaacgaagtgagatcttttactgatcctgggactcaaggaggctaaggatttggtggaaaaggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="33690" stop="34904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33990" g_stop="34604" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E699092" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33990" e_stop="34604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAACCCGCCGCCGTAATCACTATCTCCGGCGCCGTTACAAAGTCCAAGCAGAAGTTCTTATGCTATAAGATTCTGTAATCATGAGGTGCTTTAATCGATTTATCAATCAATTGCTGTCTCGCCGTTCAAGAACTATTTCCACATATCAAACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCGTTAATTAGTTCAAATTTCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGAGATTTCGGGTCTAACGTTGCTGGAAGTATCGGATTTGGGGGAGGTTCTAAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGATTTAGTGCTGGAGGGATGAAGGGAAAGGGTGCAGGAGCTGCGGGAAAGACGGAGGAGAAGGCGGAGAAGACTGTGTTTGATCTGAAGCTTGAAGGGGGATTTGATG-CCGGGGCAAAGATTAAGATTATCAAGGAAGTGAGATCTTTTACTGAT-CTGGGACTCAAGGAGGCTAAGGATTTGGTGGAAAAGGCTC</genome_strand>
        <mrna_strand>CTTAAACCCGCCGCCGTAATCACTATCTCCGGCGCCGTTACAAAGTCCAAGCAGAAGTTCTTATGCTATAAGATTCTGTAATCATGAGGTGCTTTAATCGATTTATCAATCAATTGCTGTCTCGCCGTTCAAGAACTATTTCCACATATCAAACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCGTTAATTAGTTCAAATTTCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGAGATTTCGGGTCTAACGTTGCTGGAAGTATCGGATTTGGGGGAGGTTCTAAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGATTTAGTGCTGGAGGGATGAAGGGAAAGGGTGCAGGAGCTGCGGGAAAGACGGAGGAGAAGGCGGAGAAGACTGTGTTTGATCTGAAGCTTGAAGGGGGATTTGATGCCCGGGGCAAAGATTACCATTATCAACGAAGTGAGATCTTTTACTGATCCTGGGACTCAAGGAGGCTAAGGATTTGGTGGAAAAGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206254" ref_strand="+" ref_description="SGN-E206254 [cLEC-29-L20]">
      <seq>cgtaatcactatctccggcgccgttacaaagtccaagcagaagttcttatgctataagattctgtcatcatgacgtgctctaatcgatttatcaatcaattgctgtctcgccggtcaagaactatttccacatatcacacaccttatgtgcattcacgaattccacagtccaagattcaaaatttatccaaaacccatttctacagctgcactaaatcgttgatcatttcaaactgcacaacatcagctcaggagtctaagccggccccatccgagagagtatctgcgatagtcgatgccatttcgggtctaacgttgctggaagtatcggatttgggggaggttctaaggaagaaaatgggtattgaagagatgcctgtaatggcaatgatgatgcctggaatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="33704" stop="34711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34004" g_stop="34411" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E206254" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34004" e_stop="34411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAATCACTATCTCCGGCGCCGTTACAAAGTCCAAGCAGAAGTTCTTATGCTATAAGATTCTGTAATCATGAGGTGCTTTAATCGATTTATCAATCAATTGCTGTCTCGCCGTTCAAGAACTATTTCCACATATCAAACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCGTTAATTAGTTCAAATTTCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGAGATTTCGGGTCTAACGTTGCTGGAAGTATCGGATTTGGGGGAGGTTCTAAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGA</genome_strand>
        <mrna_strand>CGTAATCACTATCTCCGGCGCCGTTACAAAGTCCAAGCAGAAGTTCTTATGCTATAAGATTCTGTCATCATGACGTGCTCTAATCGATTTATCAATCAATTGCTGTCTCGCCGGTCAAGAACTATTTCCACATATCACACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTGCACTAAATCGTTGATCATTTCAAACTGCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGCCATTTCGGGTCTAACGTTGCTGGAAGTATCGGATTTGGGGGAGGTTCTAAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338473" ref_strand="+" ref_description="SGN-E338473 [cTOE-15-J11]">
      <seq>aagttcttatgctataagattctgtaatcatgaggtgctttaatcgatttatcaatcaattgctgtctcgccgttcaagaactatttccacatatcaaacaccttatgtgcattcacgaattccacagtccaagattcaaaatttatccaaaacccatttctacagcttcactaaatcgttaattagttcaaatttcacaacatcagctcaggagtctaagccggccccatccgagagagtatctgcgatagtcgatgcgatttcgggtctaacgttgctggaagtatcggatttgggggaggttctaaggaagaaaatgggtattgaagagatgcctgtaatggcaatgatgatgcctggaatgggatttagtgctggagggatgaagggaaagggtgcaggagctgcgggaaagacggaggagaaggcggagaagactgtgtttgatctgaagcttgaagggggatttgatgccggggcaaagattaagattatcaaggaagtgagatcttttactgatctgggactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="33744" stop="34873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34044" g_stop="34573" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E338473" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34044" e_stop="34573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCTTATGCTATAAGATTCTGTAATCATGAGGTGCTTTAATCGATTTATCAATCAATTGCTGTCTCGCCGTTCAAGAACTATTTCCACATATCAAACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCGTTAATTAGTTCAAATTTCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGAGATTTCGGGTCTAACGTTGCTGGAAGTATCGGATTTGGGGGAGGTTCTAAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGATTTAGTGCTGGAGGGATGAAGGGAAAGGGTGCAGGAGCTGCGGGAAAGACGGAGGAGAAGGCGGAGAAGACTGTGTTTGATCTGAAGCTTGAAGGGGGATTTGATGCCGGGGCAAAGATTAAGATTATCAAGGAAGTGAGATCTTTTACTGATCTGGGACTC</genome_strand>
        <mrna_strand>AAGTTCTTATGCTATAAGATTCTGTAATCATGAGGTGCTTTAATCGATTTATCAATCAATTGCTGTCTCGCCGTTCAAGAACTATTTCCACATATCAAACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCGTTAATTAGTTCAAATTTCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGCGATTTCGGGTCTAACGTTGCTGGAAGTATCGGATTTGGGGGAGGTTCTAAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGATTTAGTGCTGGAGGGATGAAGGGAAAGGGTGCAGGAGCTGCGGGAAAGACGGAGGAGAAGGCGGAGAAGACTGTGTTTGATCTGAAGCTTGAAGGGGGATTTGATGCCGGGGCAAAGATTAAGATTATCAAGGAAGTGAGATCTTTTACTGATCTGGGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286524" ref_strand="+" ref_description="SGN-E286524 [cLES-12-H9]">
      <seq>gctataagattctgtaatcatgaggtgctttaatcgatttatcaatcaattgctgtctcgccgttcaagaactatttccacatatcaaacaccttatgtgcattcacgaattccacagtccaagattcaaaatttatccaaaacccatttctacagcttcactaaatcgttaattagttcaaatttcacaacatcagctcaggagtctaagccggccccatccgagagagtatctgcgatagtcgatgagatttcgggtctaacgttgctggaagtatcggatttgggggaggttctaaggaagaaaatgggtattgaagagatgcctgtaatggcaatgatgatgcctggaatgggatttagtgctggagggatgaagggaaagggtgcaggagctgcgggaaagacggaggagaaggcggagaagactgtgtttgatctgaagcttgaagggggatttgatgccggggcaaagattaagattatcaaggaagtgagatcttttactgatctgggactcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="33754" stop="34875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34054" g_stop="34575" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E286524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34054" e_stop="34575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATAAGATTCTGTAATCATGAGGTGCTTTAATCGATTTATCAATCAATTGCTGTCTCGCCGTTCAAGAACTATTTCCACATATCAAACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCGTTAATTAGTTCAAATTTCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGAGATTTCGGGTCTAACGTTGCTGGAAGTATCGGATTTGGGGGAGGTTCTAAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGATTTAGTGCTGGAGGGATGAAGGGAAAGGGTGCAGGAGCTGCGGGAAAGACGGAGGAGAAGGCGGAGAAGACTGTGTTTGATCTGAAGCTTGAAGGGGGATTTGATGCCGGGGCAAAGATTAAGATTATCAAGGAAGTGAGATCTTTTACTGATCTGGGACTCAA</genome_strand>
        <mrna_strand>GCTATAAGATTCTGTAATCATGAGGTGCTTTAATCGATTTATCAATCAATTGCTGTCTCGCCGTTCAAGAACTATTTCCACATATCAAACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCGTTAATTAGTTCAAATTTCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGAGATTTCGGGTCTAACGTTGCTGGAAGTATCGGATTTGGGGGAGGTTCTAAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGATTTAGTGCTGGAGGGATGAAGGGAAAGGGTGCAGGAGCTGCGGGAAAGACGGAGGAGAAGGCGGAGAAGACTGTGTTTGATCTGAAGCTTGAAGGGGGATTTGATGCCGGGGCAAAGATTAAGATTATCAAGGAAGTGAGATCTTTTACTGATCTGGGACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E251767" ref_strand="+" ref_description="SGN-E251767 [cLEG-15-P7]">
      <seq>aactatttccacatatcaaacaccttatgtgcattcacgaattccacagtccaagattcaaaatttatccaaaacccatttctacagcttcactaaatcgttaattagttcaaatttcacaacatcagctcaggagtctaagccggccccatccgagagagtatctgcgatagtcgatgcgatttcgggtctaacgttgctggaagtatcggatttgggggaggttctaaggaagaaaatgggtattgaagagatgcctgtaatggcaatgatgatgcctggaatgggatttagtgctggagggatgaagggaaagggtgcaggagctgcgggaaagacggaggagaaggcggagaagactgtgtttgatctgaagcttgaagggggatttgatgccggggcaaagattaagattatcaaggaagtgagatcttttactgatctgggactcaaggaggctaaggatttggtggaaaaggctccagctagtttgaagaaaggggttacgaaagaggaggctgagaaaattattgagaagatgaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="33823" stop="34968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34123" g_stop="34668" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E251767" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34123" e_stop="34668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATTTCCACATATCAAACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCGTTAATTAGTTCAAATTTCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGAGATTTCGGGTCTAACGTTGCTGGAAGTATCGGATTTGGGGGAGGTTCTAAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGATTTAGTGCTGGAGGGATGAAGGGAAAGGGTGCAGGAGCTGCGGGAAAGACGGAGGAGAAGGCGGAGAAGACTGTGTTTGATCTGAAGCTTGAAGGGGGATTTGATGCCGGGGCAAAGATTAAGATTATCAAGGAAGTGAGATCTTTTACTGATCTGGGACTCAAGGAGGCTAAGGATTTGGTGGAAAAGGCTCCAGCTAGTTTGAAGAAAGGGGTTACGAAAGAGGAGGCTGAGAAAATTATTGAGAAGATGAAAGC</genome_strand>
        <mrna_strand>AACTATTTCCACATATCAAACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCGTTAATTAGTTCAAATTTCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGCGATTTCGGGTCTAACGTTGCTGGAAGTATCGGATTTGGGGGAGGTTCTAAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGATTTAGTGCTGGAGGGATGAAGGGAAAGGGTGCAGGAGCTGCGGGAAAGACGGAGGAGAAGGCGGAGAAGACTGTGTTTGATCTGAAGCTTGAAGGGGGATTTGATGCCGGGGCAAAGATTAAGATTATCAAGGAAGTGAGATCTTTTACTGATCTGGGACTCAAGGAGGCTAAGGATTTGGTGGAAAAGGCTCCAGCTAGTTTGAAGAAAGGGGTTACGAAAGAGGAGGCTGAGAAAATTATTGAGAAGATGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E251668" ref_strand="+" ref_description="SGN-E251668 [cLEG-15-N11]">
      <seq>aactatttccacatatcaaacaccttatgtgcattcacgaattccacagtccaagattcaaaatttatccaaaacccatttctacagcttcactaaatcgttaattagttcaaatttcacaacatcagctcaggagtctaagccggccccatccgagagagtatctgcgatagtcgatgcgatttcgggtctaacgttgctggaagtatcggatttgggggaggttctaaggaagaaaatgggtattgaagagatgcctgtaatggcaatgatgatgcctggaatgggatttagtgctggagggatgaagggaaagggtgcaggagctgcgggaaagacggaggagaaggcggagaagactgtgtttgatctgaagcttgaagggggatttgatgccggggcaaagattaagattatcaaggaagtgagatcttttactgatctgggactcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="33823" stop="34876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34123" g_stop="34576" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E251668" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34123" e_stop="34576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATTTCCACATATCAAACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCGTTAATTAGTTCAAATTTCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGAGATTTCGGGTCTAACGTTGCTGGAAGTATCGGATTTGGGGGAGGTTCTAAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGATTTAGTGCTGGAGGGATGAAGGGAAAGGGTGCAGGAGCTGCGGGAAAGACGGAGGAGAAGGCGGAGAAGACTGTGTTTGATCTGAAGCTTGAAGGGGGATTTGATGCCGGGGCAAAGATTAAGATTATCAAGGAAGTGAGATCTTTTACTGATCTGGGACTCAAG</genome_strand>
        <mrna_strand>AACTATTTCCACATATCAAACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCGTTAATTAGTTCAAATTTCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGCGATTTCGGGTCTAACGTTGCTGGAAGTATCGGATTTGGGGGAGGTTCTAAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGATTTAGTGCTGGAGGGATGAAGGGAAAGGGTGCAGGAGCTGCGGGAAAGACGGAGGAGAAGGCGGAGAAGACTGTGTTTGATCTGAAGCTTGAAGGGGGATTTGATGCCGGGGCAAAGATTAAGATTATCAAGGAAGTGAGATCTTTTACTGATCTGGGACTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245594" ref_strand="+" ref_description="SGN-E245594 [cLEF-43-D7]">
      <seq>ttccacagtccaagattcaaaatttatatacaacccatttctacagcttcactaaatcggtaattagttcaaatttcacaacatcagctcaggagtctaagccggccccatccgagagagtatctgcgatagtcgatgcgatttngggtttnacgttgctgggagtatcggatttgggggaggttcttaggaagaaaatgggtattgaagagatgcctgtaatggcaatgatgatgcctggaatgggatttagtgctggagggatgaagggaaagggtgcaggagctgcgggaaagacggaggagaaggcggagaagactgtgtttgatctgaagcttgaagggggatttgatgccggggcaaagattaagattatcaaggaagtgagatcttttactgatctgggactcaaggaggctaaggatttggtggaaaaggctccagctagtttgaagaaaggggttacgaaagaggaggctgagaaaattattgagaagatgaaagcggttggagccaaagtcactatggagtgagatcccttgattgtatttttgcaacaaagatcgggagctaacaggtcatgactttgaaaacacaatctgcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="33864" stop="36694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34164" g_stop="34697" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34698" i_stop="36320" i_length="1623">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36321" g_stop="36394" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="608" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E245594" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34164" e_stop="34697"/>
          <exon e_start="36321" e_stop="36394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCGTTAATTAGTTCAAATTTCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGAGATTTCGGGTCTAACGTTGCTGGAAGTATCGGATTTGGGGGAGGTTCTAAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGATTTAGTGCTGGAGGGATGAAGGGAAAGGGTGCAGGAGCTGCGGGAAAGACGGAGGAGAAGGCGGAGAAGACTGTGTTTGATCTGAAGCTTGAAGGGGGATTTGATGCCGGGGCAAAGATTAAGATTATCAAGGAAGTGAGATCTTTTACTGATCTGGGACTCAAGGAGGCTAAGGATTTGGTGGAAAAGGCTCCAGCTAGTTTGAAGAAAGGGGTTACGAAAGAGGAGGCTGAGAAAATTATTGAGAAGATGAAAGCGGTTGGAGCCAAAGTCACTATGGAGTGAGGTAATTGTTCATGCCATTTTAATCAAAATCCTGCTAATGAATTTGAATCATGGGATGTAGTTCTTGTAATAGGGAATGCGCCAAGGTGGATAGATGTACTGTGCCAGTAGTTAAGTTTTTTTGTCTCCACAAATATGTGGATAATTGTTATGCATTCTGAAGCAAGACAGATCTTGGTTTCTAATTTAGTTGTGTTGTCTTGCAGTACACACATAATTGTTATATATGCCAGTCTCATATGCAACATGTCAATTGATGAACTTTCTTGGATAACAATTTTGAAGCATGTCCTTCAACATCTTAATATCATCCCTCACAAAAATATAGTTAGCGCACTACGTGGTTTGCTTGTGTTTTCAGTATTCTAATGTATCTTATGAATTAGTTTAAAATTCTAGTATAAGGTACAATTGTACAAACCTCTGTGAAAGCATAAGTTGGAAATGCTGAATCTTTCTTGTACAGTATGATACTAGGTTTAGGTGCAAATGAATTGTTTTAGGGTGAGGGAAGATTTTTTAGCACTTTAGGCATCAGTGTGGATCTTCCGTGGCATGATATGCTGCCTGATCGAAGATTAGTGGATTTGCTATGATCTACATTTTAATGTCTCTCAAAGTTTAAAAGGCTGGTTACAGAGTTTGAGTTGTTTGAAGTTTGTTGAAAAAATAAGGGGCCCAGTGCACTAAGCTTTCACTATGGATAGTCCGGTGGTGGATCGGAACAGATTGGGTTGATTGTATGCAGCTTTACCTACTAGCACTTCTGCAAATGGCTCTTTTCACCACTTGTACCAATAGACCTCCTGGTCACATGACGGCAACTCTTAATGTTGCACCAAGGCTATCCTTCACTTTGAAGCTCTGTTGATACATATATTTCCTGCATGTTCCTTCGGCCCATCTTGAAGAATATGAAAAGCTTCTTCATTACATACGGATTCTCTGATAAATTGTAGGGTAAAATAGTTGGAAGGGGATTTGACATGTTGTGAATATGGTTTTCAGTAAAGCTATGTACACAAACTTTACCATCACAAAAAGAAAAAAAATTATTAAAGGGGACTGGCAGATTAAAAATGAATGTGAAAATGTTCTCAGTTTGCCAAGTGGGAAAATTTAAGTGACTATTGACTTCACTGTGCATTTTCCCTTGTTTGATCTTCTATAACCAAAAAAAGTAGTATACTTCCGTTTGATTAGTTGTACCCAGCATGTAGCTGATCTTTACTAGTATAAACTTATGTCTATCTAATTTGATTTGGTCAACAATAGTGATATCTTTTCTTTAGTAGAGCGCTATGGAAGGTTTTCATAACAAATTATCTTGTAATTAGTAATTTATGTAGCTGCTTGTTGTGAATAAGATCAACTAACCTGCAAACTGTAGGTACTTAATACTATGATATGTAGTCCCTTGGAGATTTAACCTTCATCTATCTCAAACTGTATGAGATGGAATCGTGTCATCTTCACCTCTCTCTATTTGAAGATGAGATGACATAATTTTGTCTTTTTTTTTTTTTTTGGGGTGAAGTAACAATTTATCTTTCTTGTTTTGGGACGGAGAAGGAAATCCCTTCTTTGTTACTAGAGCTTACCTATCTTTTTTGTGCTTGTACAGATCCCTTGATTGTATTTTTGCAACAAAGATCGGGAGCTAACAGGTCATGACTTTGAAAACACAATCTGCATTTG</genome_strand>
        <mrna_strand>TTCCACAGTCCAAGATTCAAAATTTATATACAACCCATTTCTACAGCTTCACTAAATCGGTAATTAGTTCAAATTTCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGCGATTTNGGGTTTNACGTTGCTGGGAGTATCGGATTTGGGGGAGGTTCTTAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGATTTAGTGCTGGAGGGATGAAGGGAAAGGGTGCAGGAGCTGCGGGAAAGACGGAGGAGAAGGCGGAGAAGACTGTGTTTGATCTGAAGCTTGAAGGGGGATTTGATGCCGGGGCAAAGATTAAGATTATCAAGGAAGTGAGATCTTTTACTGATCTGGGACTCAAGGAGGCTAAGGATTTGGTGGAAAAGGCTCCAGCTAGTTTGAAGAAAGGGGTTACGAAAGAGGAGGCTGAGAAAATTATTGAGAAGATGAAAGCGGTTGGAGCCAAAGTCACTATGGAGTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCTTGATTGTATTTTTGCAACAAAGATCGGGAGCTAACAGGTCATGACTTTGAAAACACAATCTGCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275337" ref_strand="+" ref_description="SGN-E275337 [cLEN-10-C23]">
      <seq>taaggaagaaaatgggtattgaagagatgcctgtaatggcaatgatgatgcctggaatgggatttagtgctggagggatgaagggaaagggtgcaggagctgcgggaaagacggaggagaaggcggagaagactgtgtttgatctgaagcttgaagggggatttgatgccggggcaaagattaagattatcaaggaagtgagatcttttactgatctgggactcaaggaggctaaggatttggtggaaaaggctccagctagtttgaagaaaggggttacgaaagaggaggcctgagaaaattattgagaagatgaaagcggttggagccaaagtcactattggagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="34050" stop="34995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34350" g_stop="34695" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E275337" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34350" e_stop="34695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGATTTAGTGCTGGAGGGATGAAGGGAAAGGGTGCAGGAGCTGCGGGAAAGACGGAGGAGAAGGCGGAGAAGACTGTGTTTGATCTGAAGCTTGAAGGGGGATTTGATGCCGGGGCAAAGATTAAGATTATCAAGGAAGTGAGATCTTTTACTGATCTGGGACTCAAGGAGGCTAAGGATTTGGTGGAAAAGGCTCCAGCTAGTTTGAAGAAAGGGGTTACGAAAGAGGAGG-CTGAGAAAATTATTGAGAAGATGAAAGCGGTTGGAGCCAAAGTCACTA-TGGAGTG</genome_strand>
        <mrna_strand>TAAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGATTTAGTGCTGGAGGGATGAAGGGAAAGGGTGCAGGAGCTGCGGGAAAGACGGAGGAGAAGGCGGAGAAGACTGTGTTTGATCTGAAGCTTGAAGGGGGATTTGATGCCGGGGCAAAGATTAAGATTATCAAGGAAGTGAGATCTTTTACTGATCTGGGACTCAAGGAGGCTAAGGATTTGGTGGAAAAGGCTCCAGCTAGTTTGAAGAAAGGGGTTACGAAAGAGGAGGCCTGAGAAAATTATTGAGAAGATGAAAGCGGTTGGAGCCAAAGTCACTATTGGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E538393" ref_strand="+" ref_description="SGN-E538393 [TUS-57-J3](-)">
      <seq>caaggaagtgagatcttttactgatctgggactcaaggaggctaaggatttggtggaaaaggctccagctagtttgaagaaaggggttacgaaagaggaggctgagaaaattattgagaagatgaaagcggttggagccaaagtcactatggagtgagatcccttgattgtatttttgcaacaaagatcgggagctaacaggtcatgactttgaaaacacaatctgcatttggtgatgcatcatgtttggaggttcgtggttactcaagggctagcttttctgttttgaaaataaaggagacggtgactctcctaggacattgtagagctatttggttgagaactgacatcttataatgaattcacgttgttataggtatgatagatagtgagctgaaaaaaactgtggtatatttgcaaccatggattagtttccaattcagtttagatcagtttgtactctttttaattatttaggctacagttggtttgagattatcctgacaaggttgacacacatagtgaacaaagctggacttgtccggttctaattcacatttcaagctaacaaaaaaaaaaaaaaaaaaactcgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="34240" stop="105988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34540" g_stop="34697" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34698" i_stop="36320" i_length="1623">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36321" g_stop="36733" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="571" r_length="413" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36734" i_stop="37150" i_length="417">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37151" g_stop="37174" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="595" r_length="24" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E538393" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34540" e_stop="34697"/>
          <exon e_start="36321" e_stop="36733"/>
          <exon e_start="37151" e_stop="37174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGAAGTGAGATCTTTTACTGATCTGGGACTCAAGGAGGCTAAGGATTTGGTGGAAAAGGCTCCAGCTAGTTTGAAGAAAGGGGTTACGAAAGAGGAGGCTGAGAAAATTATTGAGAAGATGAAAGCGGTTGGAGCCAAAGTCACTATGGAGTGAGGTAATTGTTCATGCCATTTTAATCAAAATCCTGCTAATGAATTTGAATCATGGGATGTAGTTCTTGTAATAGGGAATGCGCCAAGGTGGATAGATGTACTGTGCCAGTAGTTAAGTTTTTTTGTCTCCACAAATATGTGGATAATTGTTATGCATTCTGAAGCAAGACAGATCTTGGTTTCTAATTTAGTTGTGTTGTCTTGCAGTACACACATAATTGTTATATATGCCAGTCTCATATGCAACATGTCAATTGATGAACTTTCTTGGATAACAATTTTGAAGCATGTCCTTCAACATCTTAATATCATCCCTCACAAAAATATAGTTAGCGCACTACGTGGTTTGCTTGTGTTTTCAGTATTCTAATGTATCTTATGAATTAGTTTAAAATTCTAGTATAAGGTACAATTGTACAAACCTCTGTGAAAGCATAAGTTGGAAATGCTGAATCTTTCTTGTACAGTATGATACTAGGTTTAGGTGCAAATGAATTGTTTTAGGGTGAGGGAAGATTTTTTAGCACTTTAGGCATCAGTGTGGATCTTCCGTGGCATGATATGCTGCCTGATCGAAGATTAGTGGATTTGCTATGATCTACATTTTAATGTCTCTCAAAGTTTAAAAGGCTGGTTACAGAGTTTGAGTTGTTTGAAGTTTGTTGAAAAAATAAGGGGCCCAGTGCACTAAGCTTTCACTATGGATAGTCCGGTGGTGGATCGGAACAGATTGGGTTGATTGTATGCAGCTTTACCTACTAGCACTTCTGCAAATGGCTCTTTTCACCACTTGTACCAATAGACCTCCTGGTCACATGACGGCAACTCTTAATGTTGCACCAAGGCTATCCTTCACTTTGAAGCTCTGTTGATACATATATTTCCTGCATGTTCCTTCGGCCCATCTTGAAGAATATGAAAAGCTTCTTCATTACATACGGATTCTCTGATAAATTGTAGGGTAAAATAGTTGGAAGGGGATTTGACATGTTGTGAATATGGTTTTCAGTAAAGCTATGTACACAAACTTTACCATCACAAAAAGAAAAAAAATTATTAAAGGGGACTGGCAGATTAAAAATGAATGTGAAAATGTTCTCAGTTTGCCAAGTGGGAAAATTTAAGTGACTATTGACTTCACTGTGCATTTTCCCTTGTTTGATCTTCTATAACCAAAAAAAGTAGTATACTTCCGTTTGATTAGTTGTACCCAGCATGTAGCTGATCTTTACTAGTATAAACTTATGTCTATCTAATTTGATTTGGTCAACAATAGTGATATCTTTTCTTTAGTAGAGCGCTATGGAAGGTTTTCATAACAAATTATCTTGTAATTAGTAATTTATGTAGCTGCTTGTTGTGAATAAGATCAACTAACCTGCAAACTGTAGGTACTTAATACTATGATATGTAGTCCCTTGGAGATTTAACCTTCATCTATCTCAAACTGTATGAGATGGAATCGTGTCATCTTCACCTCTCTCTATTTGAAGATGAGATGACATAATTTTGTCTTTTTTTTTTTTTTTGGGGTGAAGTAACAATTTATCTTTCTTGTTTTGGGACGGAGAAGGAAATCCCTTCTTTGTTACTAGAGCTTACCTATCTTTTTTGTGCTTGTACAGATCCCTTGATTGTATTTTTGCAACAAAGATCGGGAGCTAACAGGTCATGACTTTGAAAACACAATCTGCATTTGGTGATGCATCATGTTTGGAGGTTCGTGGTTACTCAAGGGCTAGCTTTTCTGTTTTGAAAATAAAGGAGACGGTGACTCTCCTAGGACATTGTAGAGCTATTTGGTTGAGAACTGACATCTTATAATGAATTCACGTTGTTATAGGTATGATAGATAGTGAGCTGAAAAAAACTGTGGTATATTTGCAACCATGGATTAGTTTCCAATTCAGTTTAGATCAGTTTGTACTCTTTTTAATTATTTAGGCTACAGTTGGTTTGAGATTATCCTGACAAGGTTGACACACATAGTGAACAAAGCTGGACTTGTCCGGTTCTAATTCACATTTCAAGCTAACAAATTGATGTCTTTGTTTTACTTCCTACAAATCCATAGAACAATAACTCACATCAGTCACATTAAACTGAATCATACTCAAATGCTTGAGGCTCAGTGGCTGTTGTGGCCATTGTTGTAGGATTCTTGCTTTGGGATGACGAATAATCCTCTGTCACGTTTCCTAAGGAGCAAGTAATCTATCTGAGTCTTAGCGACAACACTATGAAAGGTCACTTGGTGCTCCTCCCTCTTCTAAAAACTTGAGTGGGTACAATTTGACACTTAAAATTGTCAAGTAGGACGAATGTGTCTATTTAAGTATTTGGTTTATATTCCGTCCTACAAGAATAACCTGACAGATCCAACGTATGTTAAAGATGCTATATTTGGCATGGTACATTTTGACGTCTATCTAATTAGATACAAGAAGATAATTATAAAAGCAAAAAAACAATTTCTTTC</genome_strand>
        <mrna_strand>CAAGGAAGTGAGATCTTTTACTGATCTGGGACTCAAGGAGGCTAAGGATTTGGTGGAAAAGGCTCCAGCTAGTTTGAAGAAAGGGGTTACGAAAGAGGAGGCTGAGAAAATTATTGAGAAGATGAAAGCGGTTGGAGCCAAAGTCACTATGGAGTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCTTGATTGTATTTTTGCAACAAAGATCGGGAGCTAACAGGTCATGACTTTGAAAACACAATCTGCATTTGGTGATGCATCATGTTTGGAGGTTCGTGGTTACTCAAGGGCTAGCTTTTCTGTTTTGAAAATAAAGGAGACGGTGACTCTCCTAGGACATTGTAGAGCTATTTGGTTGAGAACTGACATCTTATAATGAATTCACGTTGTTATAGGTATGATAGATAGTGAGCTGAAAAAAACTGTGGTATATTTGCAACCATGGATTAGTTTCCAATTCAGTTTAGATCAGTTTGTACTCTTTTTAATTATTTAGGCTACAGTTGGTTTGAGATTATCCTGACAAGGTTGACACACATAGTGAACAAAGCTGGACTTGTCCGGTTCTAATTCACATTTCAAGCTAACAA.................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAACTCGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201627" ref_strand="-" ref_description="SGN-E201627 [cLEC-11-M12]">
      <seq>aaaaggctccagctagtttgaagaaaggggttacgaaagaggaggctgagaaaattattgagaagatgaaagcggttggagccaaagtcactatggagtgagatcccttgattgtatttttgcaacaaagatcgggagctaacaggtcatgactttgaaaacacaatctgcatttggtgatgcatcatgtttggaggttcgtggttactcaagggctagcttttctgttttgaaaataaaggagacggtgactctcctaggacattgtagagctatttggttgagaactgacatcttataatgaattcacgttgttataggtatgatagatagtgagctgaaaaaaactgtggtatatttgcaaccatggattagtttccaattcagtttagatcagtttgtactctttttaattatttaggctacagttggtttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="34296" stop="36957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34596" g_stop="34697" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34698" i_stop="36320" i_length="1623">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36321" g_stop="36664" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="446" r_length="344" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E201627" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201627" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34596" e_stop="34697"/>
          <exon e_start="36321" e_stop="36664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGCTCCAGCTAGTTTGAAGAAAGGGGTTACGAAAGAGGAGGCTGAGAAAATTATTGAGAAGATGAAAGCGGTTGGAGCCAAAGTCACTATGGAGTGAGGTAATTGTTCATGCCATTTTAATCAAAATCCTGCTAATGAATTTGAATCATGGGATGTAGTTCTTGTAATAGGGAATGCGCCAAGGTGGATAGATGTACTGTGCCAGTAGTTAAGTTTTTTTGTCTCCACAAATATGTGGATAATTGTTATGCATTCTGAAGCAAGACAGATCTTGGTTTCTAATTTAGTTGTGTTGTCTTGCAGTACACACATAATTGTTATATATGCCAGTCTCATATGCAACATGTCAATTGATGAACTTTCTTGGATAACAATTTTGAAGCATGTCCTTCAACATCTTAATATCATCCCTCACAAAAATATAGTTAGCGCACTACGTGGTTTGCTTGTGTTTTCAGTATTCTAATGTATCTTATGAATTAGTTTAAAATTCTAGTATAAGGTACAATTGTACAAACCTCTGTGAAAGCATAAGTTGGAAATGCTGAATCTTTCTTGTACAGTATGATACTAGGTTTAGGTGCAAATGAATTGTTTTAGGGTGAGGGAAGATTTTTTAGCACTTTAGGCATCAGTGTGGATCTTCCGTGGCATGATATGCTGCCTGATCGAAGATTAGTGGATTTGCTATGATCTACATTTTAATGTCTCTCAAAGTTTAAAAGGCTGGTTACAGAGTTTGAGTTGTTTGAAGTTTGTTGAAAAAATAAGGGGCCCAGTGCACTAAGCTTTCACTATGGATAGTCCGGTGGTGGATCGGAACAGATTGGGTTGATTGTATGCAGCTTTACCTACTAGCACTTCTGCAAATGGCTCTTTTCACCACTTGTACCAATAGACCTCCTGGTCACATGACGGCAACTCTTAATGTTGCACCAAGGCTATCCTTCACTTTGAAGCTCTGTTGATACATATATTTCCTGCATGTTCCTTCGGCCCATCTTGAAGAATATGAAAAGCTTCTTCATTACATACGGATTCTCTGATAAATTGTAGGGTAAAATAGTTGGAAGGGGATTTGACATGTTGTGAATATGGTTTTCAGTAAAGCTATGTACACAAACTTTACCATCACAAAAAGAAAAAAAATTATTAAAGGGGACTGGCAGATTAAAAATGAATGTGAAAATGTTCTCAGTTTGCCAAGTGGGAAAATTTAAGTGACTATTGACTTCACTGTGCATTTTCCCTTGTTTGATCTTCTATAACCAAAAAAAGTAGTATACTTCCGTTTGATTAGTTGTACCCAGCATGTAGCTGATCTTTACTAGTATAAACTTATGTCTATCTAATTTGATTTGGTCAACAATAGTGATATCTTTTCTTTAGTAGAGCGCTATGGAAGGTTTTCATAACAAATTATCTTGTAATTAGTAATTTATGTAGCTGCTTGTTGTGAATAAGATCAACTAACCTGCAAACTGTAGGTACTTAATACTATGATATGTAGTCCCTTGGAGATTTAACCTTCATCTATCTCAAACTGTATGAGATGGAATCGTGTCATCTTCACCTCTCTCTATTTGAAGATGAGATGACATAATTTTGTCTTTTTTTTTTTTTTTGGGGTGAAGTAACAATTTATCTTTCTTGTTTTGGGACGGAGAAGGAAATCCCTTCTTTGTTACTAGAGCTTACCTATCTTTTTTGTGCTTGTACAGATCCCTTGATTGTATTTTTGCAACAAAGATCGGGAGCTAACAGGTCATGACTTTGAAAACACAATCTGCATTTGGTGATGCATCATGTTTGGAGGTTCGTGGTTACTCAAGGGCTAGCTTTTCTGTTTTGAAAATAAAGGAGACGGTGACTCTCCTAGGACATTGTAGAGCTATTTGGTTGAGAACTGACATCTTATAATGAATTCACGTTGTTATAGGTATGATAGATAGTGAGCTGAAAAAAACTGTGGTATATTTGCAACCATGGATTAGTTTCCAATTCAGTTTAGATCAGTTTGTACTCTTTTTAATTATTTAGGCTACAGTTGGTTTGAGATTATCCT</genome_strand>
        <mrna_strand>AAAAGGCTCCAGCTAGTTTGAAGAAAGGGGTTACGAAAGAGGAGGCTGAGAAAATTATTGAGAAGATGAAAGCGGTTGGAGCCAAAGTCACTATGGAGTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCTTGATTGTATTTTTGCAACAAAGATCGGGAGCTAACAGGTCATGACTTTGAAAACACAATCTGCATTTGGTGATGCATCATGTTTGGAGGTTCGTGGTTACTCAAGGGCTAGCTTTTCTGTTTTGAAAATAAAGGAGACGGTGACTCTCCTAGGACATTGTAGAGCTATTTGGTTGAGAACTGACATCTTATAATGAATTCACGTTGTTATAGGTATGATAGATAGTGAGCTGAAAAAAACTGTGGTATATTTGCAACCATGGATTAGTTTCCAATTCAGTTTAGATCAGTTTGTACTCTTTTTAATTATTTAGGCTACAGTTGGTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336107" ref_strand="+" ref_description="SGN-E336107 [cTOE-12-O6]">
      <seq>ttccaccggaaaaccctcaaattcttcttctcttaagaaagcccaattccgatgggttctcgttcaaaattaagccccagtagcttatcgatgagaagaacaagaagatctacccctcacaaaaaaacatgcaaatctcaaaatcttgttgacgttgacggcggttccgtttctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="43569" stop="42807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43281" g_stop="43107" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E336107" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43281" e_stop="43107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACCGG-AAA--CTCAAATTCTTCTTCTC-TAAGAAAG--CAATTCCGATGGGTTCTCGTTCAAAATTAAGCCCCAGTAGCTTATCGATGAGAAGAACAAGAAGATCTACCCCTCACAAAAAAACATGCAAATCTCAAAATCTTGTTGACGTTGACGGCGGTTCCGTTTCTGAAAAAT</genome_strand>
        <mrna_strand>TTCCACCGGAAAACCCTCAAATTCTTCTTCTCTTAAGAAAGCCCAATTCCGATGGGTTCTCGTTCAAAATTAAGCCCCAGTAGCTTATCGATGAGAAGAACAAGAAGATCTACCCCTCACAAAAAAACATGCAAATCTCAAAATCTTGTTGACGTTGACGGCGGTTCCGTTTCTGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703055" ref_strand="+" ref_description="SGN-E703055 [FA20BG03]">
      <seq>taattttgctaatcattttctcttctgattccggcgacgattaccggggaatgtttcccgatgacggtctggtttctttaaagagataagtccatgcttccgagtaattggctaggtgaagaattatcctttctctgaagtgcagtatgattgcatcaactgcaaggcatgagagctgattgctttgatctaccaaaatctttataaagagctgaaaagctgatatattccagctggtttccttgttgtgcacaagatggcgtgtgaagaaattctgaaggctgtattcccatttctggagggcattgaactggctacatgtatgatagtgtgcaaacagtggcgagatattgcacgagatgattacttctggaaatgtctttgttctaaaaaatggccatctatttgcaaacggtcatcacctcccactgtaacatactataatctatttcagaacttccataaacgtccataccgccggactgttctccctcctaaactttccttcagtgacttagagttctacattgacatatggactgaagagaagataatattttcagatgtggtcccagggcctgttcttcagaagggaatctggatcccacctcccggaatctgtgatgtgcttaggttccacttggaagggcctgaatacaagatgactctacctgtggaaccaagatttacaattcctttgtgccagacagtcagcgtctctgtgcttgttgggcgcaaagatacaaataaagttgcatgcattatcaagaagtccctttttgattatatagatcgaacagcatatcgggctttagcttatgactatcttgacttctcctctcccatgtgcttngttgtatcgggtggtcgggcttggatatctttgctgntcatggaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="50822" stop="53459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51122" g_stop="51206" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51207" i_stop="52343" i_length="1137">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52344" g_stop="53159" g_length="816"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="901" r_length="816" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E703055" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51122" e_stop="51206"/>
          <exon e_start="52344" e_stop="53159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTGCTAATCATTTTCTCTTCTGATTCCGGCGACGATTACCGGGGAATGTTTCCCGATGACGGTCTGGTTTCTTTAAAGAGGTAATAATCTCATAATTTTTGCTTCTTTGTTTCAGTTGTTGATTTTTTCCGACGTTCATTTCCATTGATTGGTCATATCTGATTGCTAAATAAAAAGTTCATAGGTTTAATTTAGGGTTATATTCGAATTAAGGGTTCAGATGGAGAGGAATAGATATAGAGGATTCATATGATGGACTCACAAGTTCGAATTGTTAATGCTCTTGTTGTATTTTCTAATTTAGGTTTTTTTTTCTTCTTTCCGTTGGTTTTTTTTCCCTTTTTTAACGCAGAAAGTTACTTGTTTGTTTGTTTTCAGTCTTAAATAAAGCTGACAAAAATTATACCTTTTTGGTGGTTGGTTGGGTGGAATTAGCTTTATTTTGCTCATTTTCTGGATGCGTATGCTTTGTCCTTTTTCATGTACCGGTGTTGCTATTTTTTTTTTGGGGGGGTAATTGTTGAAATCTGTTTTAGTGATTTTCTTAAAGGGGAGGCCTTTCCTCTTCAAGTATTTGTGGGATTTTGATCAGTTCACTGAGTTTCCTCCAACACCATAACATCTCCTTGGTGTATTCATAAAGCTGACAGCTACTTGGATAAGTGATCTTTACATAACTCTTAAGTGTTCTTTTACAGGTCAATAAGCAAACTGCAAAGACTTTTGTTTGTATTGCTTATGAAGGAAATAAGAATATTGAAATTTGCCCTTGGGTAGACCGTTGCAGAAGAACGATTTGTTCTTCTCTTTGCGTCTAGTCTGTTTTATTTCCAAGCAAATCTCTATGTAGGAAGAAATATCGTTGCGAGTTTTTTGTTTTTTGTTCTATTTTCATATTTGAAGATTTATTAAGTTGGAACTTTGAACCTCATTTGTTTGAGATATTTGGTCAGAACAATATATGACCCCGGTGGTCAAGAAGTGTTTGAGATATTTTTAGTAATTAACCTCATAGGCTCTCATTTCACATATCTTTATTGCTTCCTTGTTTATCTAACATGCATACTTTTGTTTATTTTCTCTTTATTCACAATTTCATGTCATCTAAGCATGAGTTAGTCTAAATGTGTACATAGATATTTGGGTTATCTTCACAGTTACTCTTGATTTATTGCATAAGGAAACCTGTTTTCTCTAAATTGGTACTCTGCATGCAGATAAGTCCATGCTTCCGAGTAATTGGCTAGGTGAAGAATTATCCTTTCTCTGAAGTGCAGTATGATTGCATCAACTGCAAGGCATGAGAGCTGATTGCTTTGATCTACCAAAATCTTTATAAAGAGCTGAAAAGCTGATATATTCCAGCTGGTTTCCTTGTTGTGCACAAGATGGCGTGTGAAGAAATTCTGAAGGCTGTATTCCCATTTCTGGAGGGCATTGAACTGGCTACATGTATGATAGTGTGCAAACAGTGGCGAGATATTGCACGAGATGATTACTTCTGGAAATGTCTTTGTTCTAAAAAATGGCCATCTATTTGCAAACGGTCATCACCTCCCACTGTAACATACTATAATCTATTTCAGAACTTCCATAAACGTCCATACCGCCGGACTGTTCTCCCTCCTAAACTTTCCTTCAGTGACTTAGAGTTCTACATTGACATATGGACTGAAGAGAAGATAATATTTTCAGATGTGGTCCCAGGGCCTGTTCTTCAGAAGGGAATCTGGATCCCACCTCCCGGAATCTGTGATGTGCTTAGGTTCCACTTGGAAGGGCCTGAATACAAGATGACTCTACCTGTGGAACCAAGATTTACAATTCCTTTGTGCCAGACAGTCAGCGTCTCTGTGCTTGTTGGGCGCAAAGATACAAATAAAGTTGCATGCATTATCAAGAAGTCCCTTTTTGATTATATAGATCGAACAGCATATCGGGCTTTAGCTTATGACTATCTTGACTTCTCCTCTCCCATGTGCTTGTTTGTATCGGGTGTTCGGGCTTGGATATCTTTGCTGTTCATGGACCAT</genome_strand>
        <mrna_strand>TAATTTTGCTAATCATTTTCTCTTCTGATTCCGGCGACGATTACCGGGGAATGTTTCCCGATGACGGTCTGGTTTCTTTAAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGTCCATGCTTCCGAGTAATTGGCTAGGTGAAGAATTATCCTTTCTCTGAAGTGCAGTATGATTGCATCAACTGCAAGGCATGAGAGCTGATTGCTTTGATCTACCAAAATCTTTATAAAGAGCTGAAAAGCTGATATATTCCAGCTGGTTTCCTTGTTGTGCACAAGATGGCGTGTGAAGAAATTCTGAAGGCTGTATTCCCATTTCTGGAGGGCATTGAACTGGCTACATGTATGATAGTGTGCAAACAGTGGCGAGATATTGCACGAGATGATTACTTCTGGAAATGTCTTTGTTCTAAAAAATGGCCATCTATTTGCAAACGGTCATCACCTCCCACTGTAACATACTATAATCTATTTCAGAACTTCCATAAACGTCCATACCGCCGGACTGTTCTCCCTCCTAAACTTTCCTTCAGTGACTTAGAGTTCTACATTGACATATGGACTGAAGAGAAGATAATATTTTCAGATGTGGTCCCAGGGCCTGTTCTTCAGAAGGGAATCTGGATCCCACCTCCCGGAATCTGTGATGTGCTTAGGTTCCACTTGGAAGGGCCTGAATACAAGATGACTCTACCTGTGGAACCAAGATTTACAATTCCTTTGTGCCAGACAGTCAGCGTCTCTGTGCTTGTTGGGCGCAAAGATACAAATAAAGTTGCATGCATTATCAAGAAGTCCCTTTTTGATTATATAGATCGAACAGCATATCGGGCTTTAGCTTATGACTATCTTGACTTCTCCTCTCCCATGTGCTTNGTTGTATCGGGTGGTCGGGCTTGGATATCTTTGCTGNTCATGGACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364543" ref_strand="+" ref_description="SGN-E364543 [cLPP-18-L9]">
      <seq>taccggggaatgttttccgatgacggtctggtttctttaaagaggtaagtccatgcttctgagtaattggctaggtgaagaattatcctctctctgaagtgcagtatgattgcatcaactgcaaggcatgagagctgattgctttgatctaccaaaatctttataaagagctgaaaagcaagatatattccagctggtttccttggtgtgcacaagatggcgtgtgaagaaattctgaatgctgtattcccatttctggagggcactgaactggctacatgtatgattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="50863" stop="52887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51163" g_stop="51206" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51207" i_stop="52343" i_length="1137">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.894" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52344" g_stop="52588" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="290" r_length="246" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E364543" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51163" e_stop="51206"/>
          <exon e_start="52344" e_stop="52588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCGGGGAATGTTTCCCGATGACGGTCTGGTTTCTTTAAAGAGGTAATAATCTCATAATTTTTGCTTCTTTGTTTCAGTTGTTGATTTTTTCCGACGTTCATTTCCATTGATTGGTCATATCTGATTGCTAAATAAAAAGTTCATAGGTTTAATTTAGGGTTATATTCGAATTAAGGGTTCAGATGGAGAGGAATAGATATAGAGGATTCATATGATGGACTCACAAGTTCGAATTGTTAATGCTCTTGTTGTATTTTCTAATTTAGGTTTTTTTTTCTTCTTTCCGTTGGTTTTTTTTCCCTTTTTTAACGCAGAAAGTTACTTGTTTGTTTGTTTTCAGTCTTAAATAAAGCTGACAAAAATTATACCTTTTTGGTGGTTGGTTGGGTGGAATTAGCTTTATTTTGCTCATTTTCTGGATGCGTATGCTTTGTCCTTTTTCATGTACCGGTGTTGCTATTTTTTTTTTGGGGGGGTAATTGTTGAAATCTGTTTTAGTGATTTTCTTAAAGGGGAGGCCTTTCCTCTTCAAGTATTTGTGGGATTTTGATCAGTTCACTGAGTTTCCTCCAACACCATAACATCTCCTTGGTGTATTCATAAAGCTGACAGCTACTTGGATAAGTGATCTTTACATAACTCTTAAGTGTTCTTTTACAGGTCAATAAGCAAACTGCAAAGACTTTTGTTTGTATTGCTTATGAAGGAAATAAGAATATTGAAATTTGCCCTTGGGTAGACCGTTGCAGAAGAACGATTTGTTCTTCTCTTTGCGTCTAGTCTGTTTTATTTCCAAGCAAATCTCTATGTAGGAAGAAATATCGTTGCGAGTTTTTTGTTTTTTGTTCTATTTTCATATTTGAAGATTTATTAAGTTGGAACTTTGAACCTCATTTGTTTGAGATATTTGGTCAGAACAATATATGACCCCGGTGGTCAAGAAGTGTTTGAGATATTTTTAGTAATTAACCTCATAGGCTCTCATTTCACATATCTTTATTGCTTCCTTGTTTATCTAACATGCATACTTTTGTTTATTTTCTCTTTATTCACAATTTCATGTCATCTAAGCATGAGTTAGTCTAAATGTGTACATAGATATTTGGGTTATCTTCACAGTTACTCTTGATTTATTGCATAAGGAAACCTGTTTTCTCTAAATTGGTACTCTGCATGCAGATAAGTCCATGCTTCCGAGTAATTGGCTAGGTGAAGAATTATCCTTTCTCTGAAGTGCAGTATGATTGCATCAACTGCAAGGCATGAGAGCTGATTGCTTTGATCTACCAAAATCTTTATAAAGAGCTGAAAAGC-TGATATATTCCAGCTGGTTTCCTTGTTGTGCACAAGATGGCGTGTGAAGAAATTCTGAAGGCTGTATTCCCATTTCTGGAGGGCATTGAACTGGCTACATGTATGATAGT</genome_strand>
        <mrna_strand>TACCGGGGAATGTTTTCCGATGACGGTCTGGTTTCTTTAAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTCCATGCTTCTGAGTAATTGGCTAGGTGAAGAATTATCCTCTCTCTGAAGTGCAGTATGATTGCATCAACTGCAAGGCATGAGAGCTGATTGCTTTGATCTACCAAAATCTTTATAAAGAGCTGAAAAGCAAGATATATTCCAGCTGGTTTCCTTGGTGTGCACAAGATGGCGTGTGAAGAAATTCTGAATGCTGTATTCCCATTTCTGGAGGGCACTGAACTGGCTACATGTATGATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697375" ref_strand="+" ref_description="SGN-E697375 [FA02CF03]">
      <seq>ggcatgagagctgattgctttgatccaccctaatctttataaagagctgaaaagctgatatattcccgctggtttccttgttgtgcacaagatggcgtgtgactaaattctgaaggctgtattcccatttctggagggcattgaactggctacatgtatgatagtgtgcacacagtggcgagatattgcacgagatgattacttctggaaatgtctttgctctaaaaaatggccatctatttgcaaacggtcatcacctcccactgtaacatactataatctatttcagaacttccataaacgtccataccgccggactgttctccctcctaaactttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="52124" stop="53065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52424" g_stop="52765" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E697375" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52424" e_stop="52765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATGAGAGCTGATTGCTTTGATCTACCAAAATCTTTATAAAGAGCTGAAAAGCTGATATATTCCAGCTGGTTTCCTTGTTGTGCACAAGATGGCGTGTGAAGAAATTCTGAAGGCTGTATTCCCATTTCTGGAGGGCATTGAACTGGCTACATGTATGATAGTGTGCAAACAGTGGCGAGATATTGCACGAGATGATTACTTCTGGAAATGTCTTTGTTCTAAAAAATGGCCATCTATTTGCAAACGGTCATCACCTCCCACTGTAACATACTATAATCTATTTCAGAACTTCCATAAACGTCCATACCGCCGGACTGTTCTCCCTCCTAAACTTTCCTT</genome_strand>
        <mrna_strand>GGCATGAGAGCTGATTGCTTTGATCCACCCTAATCTTTATAAAGAGCTGAAAAGCTGATATATTCCCGCTGGTTTCCTTGTTGTGCACAAGATGGCGTGTGACTAAATTCTGAAGGCTGTATTCCCATTTCTGGAGGGCATTGAACTGGCTACATGTATGATAGTGTGCACACAGTGGCGAGATATTGCACGAGATGATTACTTCTGGAAATGTCTTTGCTCTAAAAAATGGCCATCTATTTGCAAACGGTCATCACCTCCCACTGTAACATACTATAATCTATTTCAGAACTTCCATAAACGTCCATACCGCCGGACTGTTCTCCCTCCTAAACTTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266235" ref_strand="+" ref_description="SGN-E266235 [cLEI-3-K22]">
      <seq>gacaacgaggatggaggaagcaagttctattcacaagaaaaggatggaggaagcaaatcccactttgcagtcgttcctctctggcggggtgactaaaaggaggatggaggaaccaagtcctttgcaggcaacatcccttccatctggtcgagtatcaaggatggatgaagcaagtcccacttttcaggcatcttggagtccttcagctgctgctgacagagttggacttcattcacgcattaccccaacttctgatcatcaacagactcgaccacggatcaggtttgatcccttcactggtgagccatacaaatttgaccccttcactggcgagccaattgtccctgagagctcaagtcatcatcgaagcctgtactgaacattttcttagcccacctatggctaatagccaaactcatgtaacataatgttacttgtttgttctcccacaattgtaaaatagtactagctgttagaagaggattattttgtgatctttctcattatttgaaattttggccttattaannaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="54859" stop="53733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54559" g_stop="54022" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E266235" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54559" e_stop="54022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAACGAGGATGGAGGAAGCAGGTTCTATTCACAAGAAAAGGATGGAGGAAGCAAATCCCACTTTGCAGTCGTTCCTCTCTGGCGGGGTGACTAAAAGGAGGATGGAGGAACCAAGTCCTTTGCAGGCAACATCCCTTCCATCTGGTCGAGTATCAAGGATGGATGAAGCAGGTCCCACTTTTCAGGCATCTTGGAGTCCTTCAGCTGCTGCTGACAGAGTTGGACTTCATTCACGCATTACCCCAACTTCTGATCATCAACAGACTCGACCACGGATCAGGTTTGATCCCTTCACTGGTGAGCCATACAAATTTGACCCCTTCACTGGCGAGCCAATTGTCCCTGAGAGCTCAAGTCATCATCGAAGCCTGTACTGAACATTTTCTTAGCCCACCTATGGCTAATAGCCAAACTCATGTAACATAATGTTACTTGTTTGTTCTCCCACAATTGTAAAATAGTACTAGCTGTTAGAAGAGGATTATTTTGTGATCTTTCTCATTATTTGAAATTTTGGCATTATAATCTGATCTGCA</genome_strand>
        <mrna_strand>GACAACGAGGATGGAGGAAGCAAGTTCTATTCACAAGAAAAGGATGGAGGAAGCAAATCCCACTTTGCAGTCGTTCCTCTCTGGCGGGGTGACTAAAAGGAGGATGGAGGAACCAAGTCCTTTGCAGGCAACATCCCTTCCATCTGGTCGAGTATCAAGGATGGATGAAGCAAGTCCCACTTTTCAGGCATCTTGGAGTCCTTCAGCTGCTGCTGACAGAGTTGGACTTCATTCACGCATTACCCCAACTTCTGATCATCAACAGACTCGACCACGGATCAGGTTTGATCCCTTCACTGGTGAGCCATACAAATTTGACCCCTTCACTGGCGAGCCAATTGTCCCTGAGAGCTCAAGTCATCATCGAAGCCTGTACTGAACATTTTCTTAGCCCACCTATGGCTAATAGCCAAACTCATGTAACATAATGTTACTTGTTTGTTCTCCCACAATTGTAAAATAGTACTAGCTGTTAGAAGAGGATTATTTTGTGATCTTTCTCATTATTTGAAATTTTGGCCTTATTAANNAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393779" ref_strand="+" ref_description="SGN-E393779 [TUS-14-C19](-)">
      <seq>atttggttgggtgacaacagagaggatggaggaagcaagttcccatttgcaggggacttcacttacgtatggtcaggtgacaacgaggatggaggaagcaggttttattcacaagaaaaggatggaggaagcaaatcccactttgcagtcgttcctctccgcgcggggtgactaaaaggaggatggaggaaccaagtcctttgcaggcaacatcccttccatttggttgagtatcaaggatggatgaagcaggtcccacttttcaggcattttggagtccttcagctgctgctgacagagttggacttcattcacgcattaccccaacttttgatcatcaacagacttgaccacggatcaggtttgatcccttcactggtgagccatacaaatttgaccccttcactggcgagccaattgtccctgagagctcaagtcatcattgaagcctgtactgaacatttttttagcccacctatgggtaatagccaaactcatgtaacataatgttacttgtttgttttcccacaattgtaaaatagtactagctgttagaagaggattattttgtgatctttctcattatttgaaattttggcattataatttgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="54937" stop="53728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54637" g_stop="54029" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="611" polyA_stop="632"/>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E393779" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54637" e_stop="54029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGGTCGGGTGACAACAGAGAGGATGGAGGAAGCAAGTTCCCATTTGCAGGGGACTTCACTTACGTATGGTCAGGTGACAACGAGGATGGAGGAAGCAGGTTCTATTCACAAGAAAAGGATGGAGGAAGCAAATCCCACTTTGCAGTCGTTCCTCTCTG-GCGGGGTGACTAAAAGGAGGATGGAGGAACCAAGTCCTTTGCAGGCAACATCCCTTCCATCTGGTCGAGTATCAAGGATGGATGAAGCAGGTCCCACTTTTCAGGCATCTTGGAGTCCTTCAGCTGCTGCTGACAGAGTTGGACTTCATTCACGCATTACCCCAACTTCTGATCATCAACAGACTCGACCACGGATCAGGTTTGATCCCTTCACTGGTGAGCCATACAAATTTGACCCCTTCACTGGCGAGCCAATTGTCCCTGAGAGCTCAAGTCATCATCGAAGCCTGTACTGAACATTTTCTTAGCCCACCTATGGCTAATAGCCAAACTCATGTAACATAATGTTACTTGTTTGTTCTCCCACAATTGTAAAATAGTACTAGCTGTTAGAAGAGGATTATTTTGTGATCTTTCTCATTATTTGAAATTTTGGCATTATAATCTG</genome_strand>
        <mrna_strand>ATTTGGTTGGGTGACAACAGAGAGGATGGAGGAAGCAAGTTCCCATTTGCAGGGGACTTCACTTACGTATGGTCAGGTGACAACGAGGATGGAGGAAGCAGGTTTTATTCACAAGAAAAGGATGGAGGAAGCAAATCCCACTTTGCAGTCGTTCCTCTCCGCGCGGGGTGACTAAAAGGAGGATGGAGGAACCAAGTCCTTTGCAGGCAACATCCCTTCCATTTGGTTGAGTATCAAGGATGGATGAAGCAGGTCCCACTTTTCAGGCATTTTGGAGTCCTTCAGCTGCTGCTGACAGAGTTGGACTTCATTCACGCATTACCCCAACTTTTGATCATCAACAGACTTGACCACGGATCAGGTTTGATCCCTTCACTGGTGAGCCATACAAATTTGACCCCTTCACTGGCGAGCCAATTGTCCCTGAGAGCTCAAGTCATCATTGAAGCCTGTACTGAACATTTTTTTAGCCCACCTATGGGTAATAGCCAAACTCATGTAACATAATGTTACTTGTTTGTTTTCCCACAATTGTAAAATAGTACTAGCTGTTAGAAGAGGATTATTTTGTGATCTTTCTCATTATTTGAAATTTTGGCATTATAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E397754" ref_strand="+" ref_description="SGN-E397754 [TUS-46-B7](-)">
      <seq>agcaagttcccatttgcaggggacttcacttacgtatggtcaggtgacaacgaggatggaggaagcaggttttattcacaagaaaaggatggaggaagcaaatcccactttgcagtcgttcctttttggcggggtgactaaaaggaggatggaggaaccaagtcctttgcaggcaacatcccttccatctggtcgagtatcaaggatggatgaagcaggtcccacttttcaggcatcttggagtccttcagctgctggtgacagagttggacttcattcacgcattaccccaacttttgatcatcaacagacttgaccacggatcaggtttgatcccttcactggtgagccatacaaatttgaccccttcactggcgagccaattgtccctgagagctcaagtcatcattgaagcctgtactgaacatttttttagcccacctatgggtaatagccaaactcatgtaacataatgttacttgtttgttttcccacaattgtaaaatagtactagctgttagaagaggattattttgtgatctttttcattatttgaaattttggcattataatttgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="54904" stop="53728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54604" g_stop="54029" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="577" polyA_stop="598"/>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E397754" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54604" e_stop="54029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGTTCCCATTTGCAGGGGACTTCACTTACGTATGGTCAGGTGACAACGAGGATGGAGGAAGCAGGTTCTATTCACAAGAAAAGGATGGAGGAAGCAAATCCCACTTTGCAGTCGTTCCTCTCTGGCGGGGTGACTAAAAGGAGGATGGAGGAACCAAGTCCTTTGCAGGCAACATCCCTTCCATCTGGTCGAGTATCAAGGATGGATGAAGCAGGTCCCACTTTTCAGGCATCTTGGAGTCCTTCAGCTGCTGCTGACAGAGTTGGACTTCATTCACGCATTACCCCAACTTCTGATCATCAACAGACTCGACCACGGATCAGGTTTGATCCCTTCACTGGTGAGCCATACAAATTTGACCCCTTCACTGGCGAGCCAATTGTCCCTGAGAGCTCAAGTCATCATCGAAGCCTGTACTGAACATTTTCTTAGCCCACCTATGGCTAATAGCCAAACTCATGTAACATAATGTTACTTGTTTGTTCTCCCACAATTGTAAAATAGTACTAGCTGTTAGAAGAGGATTATTTTGTGATCTTTCTCATTATTTGAAATTTTGGCATTATAATCTG</genome_strand>
        <mrna_strand>AGCAAGTTCCCATTTGCAGGGGACTTCACTTACGTATGGTCAGGTGACAACGAGGATGGAGGAAGCAGGTTTTATTCACAAGAAAAGGATGGAGGAAGCAAATCCCACTTTGCAGTCGTTCCTTTTTGGCGGGGTGACTAAAAGGAGGATGGAGGAACCAAGTCCTTTGCAGGCAACATCCCTTCCATCTGGTCGAGTATCAAGGATGGATGAAGCAGGTCCCACTTTTCAGGCATCTTGGAGTCCTTCAGCTGCTGGTGACAGAGTTGGACTTCATTCACGCATTACCCCAACTTTTGATCATCAACAGACTTGACCACGGATCAGGTTTGATCCCTTCACTGGTGAGCCATACAAATTTGACCCCTTCACTGGCGAGCCAATTGTCCCTGAGAGCTCAAGTCATCATTGAAGCCTGTACTGAACATTTTTTTAGCCCACCTATGGGTAATAGCCAAACTCATGTAACATAATGTTACTTGTTTGTTTTCCCACAATTGTAAAATAGTACTAGCTGTTAGAAGAGGATTATTTTGTGATCTTTTTCATTATTTGAAATTTTGGCATTATAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551567" ref_strand="+" ref_description="SGN-E551567 [cTSB-1-C17]">
      <seq>gattcatatgcctcccgagtacccttgcccatggctagggctgatgtttacacatctcgctattcagcgtatttagatccctatcaatctggtcgggtgacaacagagaggatggaggaagcaagttcccatttgcaggggacttcacttacgtatggtcaggtgacaacgaggatggaggaagcaggttctattcacaagaaaaggatggaggaagcaaatcccactttgcagtcgttcctctctggcggggtgactaaaaggaggatggaggaaccaagtcctttgcaggcaacatcccttccatctggtcgagtatcaaggatggatgaagcaggtcccacttttcaggcatcttggagtccttcagctgctgctgacagagttggacttcattcacgcattaccccaacttctgatcatcaacagactcgaccacggatcaggtttgatcccttcactggtgagccatacaaatttgaccccttcactggcgagccaattgtccctgagagctcaagtcatcatcgaagcctgtactgaacattttcttagcccacctatggctaatagccaaactcatgtaacataatgttacttgtttgttctcccacaattgtaaaatagtactagctgttagaagaggattattttgtgatctttctcattatttgaaattttggcattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="55214" stop="53733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54914" g_stop="54877" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54876" i_stop="54686" i_length="191">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54685" g_stop="54037" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="687" r_length="649" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="705"/>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E551567" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54914" e_stop="54877"/>
          <exon e_start="54685" e_stop="54037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCATATGCCTCCCGAGTACCCTTGCCCATGGCTAGGTTAGCTAACACATCAACTCTAGATTATTCTAAAACTATGCTGCATGTCTGGTTCTAAGAGCAGAATGATGTTGACCAAGTAAATATTCTTGGAGTGATAATATGTTTTTGCCGGCTCTTTAGTGACACCTATTATTGAAGGTAGACAACTATTGAGGTAACAGAACCACTTTGCTGCTGGTTTCTTGCAGGGCTGATGTTTACACATCTCGCTATTCAGCGTATTTAGATCCCTATCAATCTGGTCGGGTGACAACAGAGAGGATGGAGGAAGCAAGTTCCCATTTGCAGGGGACTTCACTTACGTATGGTCAGGTGACAACGAGGATGGAGGAAGCAGGTTCTATTCACAAGAAAAGGATGGAGGAAGCAAATCCCACTTTGCAGTCGTTCCTCTCTGGCGGGGTGACTAAAAGGAGGATGGAGGAACCAAGTCCTTTGCAGGCAACATCCCTTCCATCTGGTCGAGTATCAAGGATGGATGAAGCAGGTCCCACTTTTCAGGCATCTTGGAGTCCTTCAGCTGCTGCTGACAGAGTTGGACTTCATTCACGCATTACCCCAACTTCTGATCATCAACAGACTCGACCACGGATCAGGTTTGATCCCTTCACTGGTGAGCCATACAAATTTGACCCCTTCACTGGCGAGCCAATTGTCCCTGAGAGCTCAAGTCATCATCGAAGCCTGTACTGAACATTTTCTTAGCCCACCTATGGCTAATAGCCAAACTCATGTAACATAATGTTACTTGTTTGTTCTCCCACAATTGTAAAATAGTACTAGCTGTTAGAAGAGGATTATTTTGTGATCTTTCTCATTATTTGAAATTTTGGCATT</genome_strand>
        <mrna_strand>GATTCATATGCCTCCCGAGTACCCTTGCCCATGGCTAG...............................................................................................................................................................................................GGCTGATGTTTACACATCTCGCTATTCAGCGTATTTAGATCCCTATCAATCTGGTCGGGTGACAACAGAGAGGATGGAGGAAGCAAGTTCCCATTTGCAGGGGACTTCACTTACGTATGGTCAGGTGACAACGAGGATGGAGGAAGCAGGTTCTATTCACAAGAAAAGGATGGAGGAAGCAAATCCCACTTTGCAGTCGTTCCTCTCTGGCGGGGTGACTAAAAGGAGGATGGAGGAACCAAGTCCTTTGCAGGCAACATCCCTTCCATCTGGTCGAGTATCAAGGATGGATGAAGCAGGTCCCACTTTTCAGGCATCTTGGAGTCCTTCAGCTGCTGCTGACAGAGTTGGACTTCATTCACGCATTACCCCAACTTCTGATCATCAACAGACTCGACCACGGATCAGGTTTGATCCCTTCACTGGTGAGCCATACAAATTTGACCCCTTCACTGGCGAGCCAATTGTCCCTGAGAGCTCAAGTCATCATCGAAGCCTGTACTGAACATTTTCTTAGCCCACCTATGGCTAATAGCCAAACTCATGTAACATAATGTTACTTGTTTGTTCTCCCACAATTGTAAAATAGTACTAGCTGTTAGAAGAGGATTATTTTGTGATCTTTCTCATTATTTGAAATTTTGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690433" ref_strand="+" ref_description="SGN-E690433 [LH_Ea03H23]">
      <seq>gttcccttgcccatggctagggctgatgtttacaaatctcgctattcagcgtatttagatccctacctatctggtcgggtgacaacagagaggatggaggaagcaagttcccatttgcaggggacttcacttacgtatggtcaggtgacaacgaggatggaggaagcaggtcctattcacaagaaaaggatggaggaagcaagtcccactttgcagtcgctcctctctggcggggtgactacaaggaggatggaggaaccaagtcccgttttgcaggcaacatcccttccatctggtcgaatatcaaggatggatgaagcaggtcccatttttcaggcatcttggagtccttcagctgctgctgacagagttggacttcattcacgcattaccccaacttctgatcatcaacagactcgaccacggatcaggtttgatcccttcactggtgagccatacaaatttgaccccttcactggcgagccaattgtccctgagagctcaagtcatcatcgaagcctgtactgaacattttctgagcccacatatggctaatagcggaactcatgtaacataatgatgcgtgtttgttctcccacaattgtaaaatagtactagctgttagaagaggattattgtcatctttctcattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="55196" stop="53770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54896" g_stop="54877" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54876" i_stop="54686" i_length="191">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54685" g_stop="54043" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="664" r_length="644" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E690433" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54896" e_stop="54877"/>
          <exon e_start="54685" e_stop="54043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACCCTTGCCCATGGCTAGGTTAGCTAACACATCAACTCTAGATTATTCTAAAACTATGCTGCATGTCTGGTTCTAAGAGCAGAATGATGTTGACCAAGTAAATATTCTTGGAGTGATAATATGTTTTTGCCGGCTCTTTAGTGACACCTATTATTGAAGGTAGACAACTATTGAGGTAACAGAACCACTTTGCTGCTGGTTTCTTGCAGGGCTGATGTTTACACATCTCGCTATTCAGCGTATTTAGATCCCTATCAATCTGGTCGGGTGACAACAGAGAGGATGGAGGAAGCAAGTTCCCATTTGCAGGGGACTTCACTTACGTATGGTCAGGTGACAACGAGGATGGAGGAAGCAGGTTCTATTCACAAGAAAAGGATGGAGGAAGCAAATCCCACTTTGCAGTCGTTCCTCTCTGGCGGGGTGACTAAAAGGAGGATGGAGGAACCAAGT-CC--TTTGCAGGCAACATCCCTTCCATCTGGTCGAGTATCAAGGATGGATGAAGCAGGTCCCACTTTTCAGGCATCTTGGAGTCCTTCAGCTGCTGCTGACAGAGTTGGACTTCATTCACGCATTACCCCAACTTCTGATCATCAACAGACTCGACCACGGATCAGGTTTGATCCCTTCACTGGTGAGCCATACAAATTTGACCCCTTCACTGGCGAGCCAATTGTCCCTGAGAGCTCAAGTCATCATCGAAGCCTGTACTGAACATTTTCTTAGCCCACCTATGGCTAATAGCCAAACTCATGTAACATAATGTTACTTGTTTGTTCTCCCACAATTGTAAAATAGTACTAGCTGTTAGAAGAGGATTATTTTGTGATCTTTCTCATTATTTGAAATTTT</genome_strand>
        <mrna_strand>GTTCCCTTGCCCATGGCTAG...............................................................................................................................................................................................GGCTGATGTTTACAAATCTCGCTATTCAGCGTATTTAGATCCCTACCTATCTGGTCGGGTGACAACAGAGAGGATGGAGGAAGCAAGTTCCCATTTGCAGGGGACTTCACTTACGTATGGTCAGGTGACAACGAGGATGGAGGAAGCAGGTCCTATTCACAAGAAAAGGATGGAGGAAGCAAGTCCCACTTTGCAGTCGCTCCTCTCTGGCGGGGTGACTACAAGGAGGATGGAGGAACCAAGTCCCGTTTTGCAGGCAACATCCCTTCCATCTGGTCGAATATCAAGGATGGATGAAGCAGGTCCCATTTTTCAGGCATCTTGGAGTCCTTCAGCTGCTGCTGACAGAGTTGGACTTCATTCACGCATTACCCCAACTTCTGATCATCAACAGACTCGACCACGGATCAGGTTTGATCCCTTCACTGGTGAGCCATACAAATTTGACCCCTTCACTGGCGAGCCAATTGTCCCTGAGAGCTCAAGTCATCATCGAAGCCTGTACTGAACATTTTCTGAGCCCACATATGGCTAATAGCGGAACTCATGTAACATAATGATGCGTGTTTGTTCTCCCACAATTGTAAAATAGTACTAGCTGTTAGAAGAGGATTA--TTGTCATCTTTCTCATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694273" ref_strand="+" ref_description="SGN-E694273 [LH_Ea03H23](-)">
      <seq>gttcccttgcccatggctagggctgatgtttacaaatctcgctattcagcgtatttagatccctacctatctggtcgggtgacaacagagaggatggaggaagcaagttcccatttgcaggggacttcacttacgtatggtcaggtgacaacgaggatggaggaagcaggtcctattcacaagaaaaggatggaggaagcaagtcccactttgcagtcgctcctctctggcggggtgactacaaggaggatggaggaaccaagtcccgttttgcaggcaacatcccttccatctggtcgaatatcaaggatggatgaagcaggtcccatttttcaggcatcttggagtccttcagctgctgctgacagagttggacttcattcacgcattaccccaacttctgatcatcaacagactcgaccacggatcaggtttgatcccttcactggtgagccatacaaatttgaccccttcactggcgagccaattgtccctgagagctcaagtcatcatcgaagcctgtactgaacattttctgagcccacatatggctaatagcggaactcatgtaacataatgatgcgtgtttgttctcccacaattgtaaaatagtactagcagtggaagaggattatgtcatcttctcattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="55196" stop="53787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54896" g_stop="54877" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54876" i_stop="54686" i_length="191">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54685" g_stop="54075" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="633" r_length="613" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="650" polyA_stop="668"/>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E694273" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54896" e_stop="54877"/>
          <exon e_start="54685" e_stop="54075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACCCTTGCCCATGGCTAGGTTAGCTAACACATCAACTCTAGATTATTCTAAAACTATGCTGCATGTCTGGTTCTAAGAGCAGAATGATGTTGACCAAGTAAATATTCTTGGAGTGATAATATGTTTTTGCCGGCTCTTTAGTGACACCTATTATTGAAGGTAGACAACTATTGAGGTAACAGAACCACTTTGCTGCTGGTTTCTTGCAGGGCTGATGTTTACACATCTCGCTATTCAGCGTATTTAGATCCCTATCAATCTGGTCGGGTGACAACAGAGAGGATGGAGGAAGCAAGTTCCCATTTGCAGGGGACTTCACTTACGTATGGTCAGGTGACAACGAGGATGGAGGAAGCAGGTTCTATTCACAAGAAAAGGATGGAGGAAGCAAATCCCACTTTGCAGTCGTTCCTCTCTGGCGGGGTGACTAAAAGGAGGATGGAGGAACCAAGT-CC--TTTGCAGGCAACATCCCTTCCATCTGGTCGAGTATCAAGGATGGATGAAGCAGGTCCCACTTTTCAGGCATCTTGGAGTCCTTCAGCTGCTGCTGACAGAGTTGGACTTCATTCACGCATTACCCCAACTTCTGATCATCAACAGACTCGACCACGGATCAGGTTTGATCCCTTCACTGGTGAGCCATACAAATTTGACCCCTTCACTGGCGAGCCAATTGTCCCTGAGAGCTCAAGTCATCATCGAAGCCTGTACTGAACATTTTCTTAGCCCACCTATGGCTAATAGCCAAACTCATGTAACATAATGTTACTTGTTTGTTCTCCCACAATTGTAAAATAGTACTAGCTGTTAGAAGAGGATT</genome_strand>
        <mrna_strand>GTTCCCTTGCCCATGGCTAG...............................................................................................................................................................................................GGCTGATGTTTACAAATCTCGCTATTCAGCGTATTTAGATCCCTACCTATCTGGTCGGGTGACAACAGAGAGGATGGAGGAAGCAAGTTCCCATTTGCAGGGGACTTCACTTACGTATGGTCAGGTGACAACGAGGATGGAGGAAGCAGGTCCTATTCACAAGAAAAGGATGGAGGAAGCAAGTCCCACTTTGCAGTCGCTCCTCTCTGGCGGGGTGACTACAAGGAGGATGGAGGAACCAAGTCCCGTTTTGCAGGCAACATCCCTTCCATCTGGTCGAATATCAAGGATGGATGAAGCAGGTCCCATTTTTCAGGCATCTTGGAGTCCTTCAGCTGCTGCTGACAGAGTTGGACTTCATTCACGCATTACCCCAACTTCTGATCATCAACAGACTCGACCACGGATCAGGTTTGATCCCTTCACTGGTGAGCCATACAAATTTGACCCCTTCACTGGCGAGCCAATTGTCCCTGAGAGCTCAAGTCATCATCGAAGCCTGTACTGAACATTTTCTGAGCCCACATATGGCTAATAGCGGAACTCATGTAACATAATGATGCGTGTTTGTTCTCCCACAATTGTAAAATAGTACTAGCAG-TGGAAGAGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728293" ref_strand="+" ref_description="SGN-E728293 [LA17BD04]">
      <seq>ctctctattctccaatgtctttcatttatagctcatgtggtctgaagctgatatgcagaacaagggaggatttttagcttcattaatttctaaagtatgttctgcagagtgcagataagcatcgaaagtgttatctttgttagtactataatattttgcgcgctttatttaacaaagtcttctctggaaatagcagcaggttgaaaagctgggattgaaacagtttgatagcaagtcaagggtagaagatgttgccttgagggtaccagaaccagacagcttctctacaagagttcgtttgccacatctagattcatatgcctcccgagtacccttgcccatggctagggctgatgtttacacatctcgctattcagcgtatttagatccctatcaatctggtcgggtgacaacagagaggatggaggaagcaagttcccatttgcaggggacttcacttacgtatggtcaggtgacaacgaggatggaggaagcaggttctattcacaagaaaaggatggaggaagcaaatcccactttgcagtcgttcctctctggcggggtgactaanaggaggatggaggaaccaagtcctttgcaggcaacatcccttccatctggtcgagtatncaggatggatgaagcaggtcccacttttcaggcatcttggagtccttcagctgctgctgacagagttggacttcattcacgcattaccccaacttctgatcatcaacagactcgaccacggatcaggtttgatcccttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="55523" stop="53963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55223" g_stop="54877" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54876" i_stop="54686" i_length="191">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54685" g_stop="54263" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="771" r_length="423" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E728293" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55223" e_stop="54877"/>
          <exon e_start="54685" e_stop="54263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CT-TCTATTCTCCAATGTCTTTCATTTATAGCTCATGTGGTCTGAAGCTGATATGCAGAACAAGGGAGGATTTTTAGCTTCATTAATTTCTAAAGTATGTTCTGCAGAGTGCAGATAAGCATCGAAAGTGTTATCTTTGTTAGTACTATAATATTTTGCGCGCTTTATTTAACAAAGTCTTCTCTGGAAATAGCAGCAGGTTGAAAAGCTGGGATTGAAACAGTTTGATAGCAAGTCAAGGGTAGAAGATGTTGCCTTGAGGGTACCAGAACCAGACAGCTTCTCTACAAGAGTTCGTTTGCCACATCTAGATTCATATGCCTCCCGAGTACCCTTGCCCATGGCTAGGTTAGCTAACACATCAACTCTAGATTATTCTAAAACTATGCTGCATGTCTGGTTCTAAGAGCAGAATGATGTTGACCAAGTAAATATTCTTGGAGTGATAATATGTTTTTGCCGGCTCTTTAGTGACACCTATTATTGAAGGTAGACAACTATTGAGGTAACAGAACCACTTTGCTGCTGGTTTCTTGCAGGGCTGATGTTTACACATCTCGCTATTCAGCGTATTTAGATCCCTATCAATCTGGTCGGGTGACAACAGAGAGGATGGAGGAAGCAAGTTCCCATTTGCAGGGGACTTCACTTACGTATGGTCAGGTGACAACGAGGATGGAGGAAGCAGGTTCTATTCACAAGAAAAGGATGGAGGAAGCAAATCCCACTTTGCAGTCGTTCCTCTCTGGCGGGGTGACTAAAAGGAGGATGGAGGAACCAAGTCCTTTGCAGGCAACATCCCTTCCATCTGGTCGAGTATCAAGGATGGATGAAGCAGGTCCCACTTTTCAGGCATCTTGGAGTCCTTCAGCTGCTGCTGACAGAGTTGGACTTCATTCACGCATTACCCCAACTTCTGATCATCAACAGACTCGACCACGGATCAGGTTTGATCCCTTCAC</genome_strand>
        <mrna_strand>CTCTCTATTCTCCAATGTCTTTCATTTATAGCTCATGTGGTCTGAAGCTGATATGCAGAACAAGGGAGGATTTTTAGCTTCATTAATTTCTAAAGTATGTTCTGCAGAGTGCAGATAAGCATCGAAAGTGTTATCTTTGTTAGTACTATAATATTTTGCGCGCTTTATTTAACAAAGTCTTCTCTGGAAATAGCAGCAGGTTGAAAAGCTGGGATTGAAACAGTTTGATAGCAAGTCAAGGGTAGAAGATGTTGCCTTGAGGGTACCAGAACCAGACAGCTTCTCTACAAGAGTTCGTTTGCCACATCTAGATTCATATGCCTCCCGAGTACCCTTGCCCATGGCTAG...............................................................................................................................................................................................GGCTGATGTTTACACATCTCGCTATTCAGCGTATTTAGATCCCTATCAATCTGGTCGGGTGACAACAGAGAGGATGGAGGAAGCAAGTTCCCATTTGCAGGGGACTTCACTTACGTATGGTCAGGTGACAACGAGGATGGAGGAAGCAGGTTCTATTCACAAGAAAAGGATGGAGGAAGCAAATCCCACTTTGCAGTCGTTCCTCTCTGGCGGGGTGACTAANAGGAGGATGGAGGAACCAAGTCCTTTGCAGGCAACATCCCTTCCATCTGGTCGAGTATNCAGGATGGATGAAGCAGGTCCCACTTTTCAGGCATCTTGGAGTCCTTCAGCTGCTGCTGACAGAGTTGGACTTCATTCACGCATTACCCCAACTTCTGATCATCAACAGACTCGACCACGGATCAGGTTTGATCCCTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258684" ref_strand="+" ref_description="SGN-E258684 [cLEG-50-H21]">
      <seq>tcaggtcgaagttgcgaggccaactgataagaacaggaaacgaggtcgtgaggatcaaaaaatgtccagtaacattgagagtcattccaagcttttgaaggatgatccaaatgttgagatggttgggggtcctaaatcaaaagctcaaccggtgatgcatctatcagatgaaatggattatttggatccttatgaagctgctgtaattgcactacctgtgcttgtcaaggagcgtttagttcggatcttgcggcttggtattgctactagatatgatatagatgttgtcaacctaaccagtcttaagatgttgcccgaatcagctgccatatctgttcttgaccagctcatgtggtctgaagctgatatgcagaacaagggaggatttttagcttcattaatttctaaacaggttgaaaagctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="58107" stop="54831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57911" g_stop="57908" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57907" i_stop="57805" i_length="103">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57804" g_stop="57640" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="169" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57639" i_stop="56655" i_length="985">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56654" g_stop="56547" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="277" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56546" i_stop="55371" i_length="1176">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55370" g_stop="55302" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="346" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55301" i_stop="55194" i_length="108">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55193" g_stop="55131" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="409" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55130" i_stop="55029" i_length="102">
            <donor d_prob="0.138" d_score="1.00"/>
            <acceptor a_prob="0.777" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55028" g_stop="55012" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="426" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E258684" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57911" e_stop="57908"/>
          <exon e_start="57804" e_stop="57640"/>
          <exon e_start="56654" e_stop="56547"/>
          <exon e_start="55370" e_stop="55302"/>
          <exon e_start="55193" e_stop="55131"/>
          <exon e_start="55028" e_stop="55012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGTGATTTTTGTCCTTTCTAGTTTTCGTAAGTTGTCCAAGCTGATATCTTCAACAATAGTTTACAGATATGTAATATTGATGATTAATTATGATTTGCTAACAGGTCGAAGTTGCGAGGCCAACTGATAAGAACAGGAAACGAGGTCGTGAGGATCAAAAAATGTCCAGTAACATTGAGAGTCATTCCAAGCTTTTGAAGGATGATCCAAATGTTGAGATGGTTGGGGGTCCTAAATCAAAAGCTCAACCGGTGATGCATCTATCAGATGTTAGTTTCTTTTTTGATATCTCAGATGTCTCGTCTCCTTTAATATATTTTATTGGCATTTTAATGTTGCAAATATTTGCCGGTACAATTTCTTCGAAAATAAAGTAGAAGCGGCTCTGATAGAAATTTCCTGGTTTGCACTGGGCAAAGCTTATATGATGCTTCTTCTTTGTAGTATACAGTCAGTTCTTTTCAAATATACAACTAAGGCCGCAATCTCAAGCTAGTCGGGGTCACCATATGAATTTACACTATCTATTGCACACTATCTGAACCTATTTCATTGGATAATCTGTAACTTGAAGCATGGTATTAGACGTTCTCTAAATCTGCACGGATTCATGGGACTGTAAGTGTTTGAGATAAGCTCGTTTTGTGATTTTAGGTCCTTAAGTAAATTCATTCTATGAGATTTTTGGGTCTTTAAGATAACTTCATTTTATGTGATTTTAGGTGTACTTCATTTCTTTTCATTTGGACTCTATGTAGGACATGACCGAATTGTCTCAAGAGACCCTTCACTTTGTTCTCTATTTGTGCTACTTACACCTTATGGCGTATGACCATTCCTGATTTTATCTAATGTTGTATGATGCATCTATCTTAACATTAAAATTTCTGCAACACTTATGTTATGGATACGGGACCTTAGAGGACTGACATTCACTCCCATATAACAATGCTAGTCCAGTAATAGTTTTGTAGAACTTGTCTTTTGCTCTTGTAAATATCCTCCTAGTGCATAATATTCTGGTAGCACTCCACTTCAACCATGGAGGTTTGATGGGATGGGAATCCCATATCAAGAAAATATAATAAGAATAATAATATTGTGTTCAATGTTATGAACATAAATGCTTGAAGCGAGTCTATTTGAAGTTATTGTCAGCTGCATGATTGAACTGTTTAAGCCCAATTTGATTTGAATGGTTGTTATTTTCCATTCAACTCTGAATCTGTCATCTTATACTTTTTCTTCAATCAGGAAATGGATTATTTGGATCCTTATGAAGCTGCTGTAATTGCACTACCTGTGCTTGTCAAGGAGCGTTTAGTTCGGATCTTGCGGCTTGGTATTGCTACTAGATATGATGTAAGTTAACGGATGGACTCTACTACCCGAAGCTATAGTTCTGTTCATGTATTATGTCTAATTTATCAAGAAGGTTTTCATGTCAATTCTAGCCAAAGTATTGTTATTAATTTTGTTCTCATCAACAGAAAAATATGAAATTTCTTCTTTTTTCTGTGAGTATGTATTGACAAAGAAAGACAAGTTCCGTTTTGGTCGCCATTATCTAGTTTGTTTGTATTGGCTTCAAGTGTTTGTTTATTGAGCTGCCAAACAAGCTGATATAAAATTTGTGATCCTCTTTCTTGCCTCTTCATTTATATGGGTTATAGTGGCAAGATATAAATTCTTCGTTTTCTTTCAAGTGGTATCTGTAGTTATCAATTCTGTTTCACTAATATAATCTAATGTTAGTGAATTTATCCATGTTTTTGATGGTTTATTAAGGGCGTGTTCAGTATGAAGGTTAATGTTTTTTGGGAAAATAAGTGGATTTCTTACTTATTTTCTTGTATTTAGTACTTAAGCACAAATTATTAACGTAAAAGAATTTTTATATAATCTAAGACAAATTCTATGACAGGTGGGGGTGTGGGGTGGTGCTATGGTGGGGATAAGGAACTATGAAGGTGGGGGTGAAGATGAGGTTTATTGGAGGGCAAGGAAGAAACAACCGATGTGGAATGTTGCTTGTGGAATTTGTTTTCCCTACTTTCACTAGGGAAGTCATTTTCCTCATTGCAAGGAACTTCTTTTCCTAGACAAAATATGTTCAATAACATTGACCAATCAAACATGGGTAAACAAGTTCCTTGTTCCATACATACACTCCCTAATCCATGGAATTTATTTCTTAGGATCAGGGATAGGCCCACTTTATCTCTGCAGAAGCTGAAAAATTAAGACATGTAAATTCTACAAATACATGATTTACTTTCTGCAGAAAAACTAAGACATGTAAATTCTACAAATACACGATTTACTTGTATGTTTGTGTGGTCAAAGGACTGACATGTTTTTACCTGGTTAGCATGTTGCATGGTGAAATCTGCATAAATTATCATGCAACATAAGCTCTTCACCTGCTTTATGCGACATCTGTTAGGTCATAATATTTGCTGAAATGTATTTCTGATGTTGAATGTTCTGTGTTAATCCTGTACTGGCTAAAGGTTTTGAATGTGTTTTTATTCTCAGATAGATGTTGTCAACCTAACCAGTCTTAAGATGTTGCCCGAGTCAGCTGCCATATCTGTTCTTGACCAGGTCTGAAATATTTATACCTCTAGTATTCCTAGTGAAAATTTTAGTATATTCTACAGCAATTGAAGATCGACTCTCATGCTTCTATTCTCCAATGTCTTTCATTTATAGCTCATGTGGTCTGAAGCTGATATGCAGAACAAGGGAGGATTTTTAGCTTCATTAATTTCTAAAGTATGTTCTGCAGAGTGCAGATAAGCATCGAAAGTGTTATCTTTGTTAGTACTATAATATTTTGCGCGCTTTATTTAACAAAGTCTTCTCTGGAAATAGCAGCAGGTTGAAAAGCTGGG</genome_strand>
        <mrna_strand>TCAG.......................................................................................................GTCGAAGTTGCGAGGCCAACTGATAAGAACAGGAAACGAGGTCGTGAGGATCAAAAAATGTCCAGTAACATTGAGAGTCATTCCAAGCTTTTGAAGGATGATCCAAATGTTGAGATGGTTGGGGGTCCTAAATCAAAAGCTCAACCGGTGATGCATCTATCAGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTATTTGGATCCTTATGAAGCTGCTGTAATTGCACTACCTGTGCTTGTCAAGGAGCGTTTAGTTCGGATCTTGCGGCTTGGTATTGCTACTAGATATGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATGTTGTCAACCTAACCAGTCTTAAGATGTTGCCCGAATCAGCTGCCATATCTGTTCTTGACCAG............................................................................................................CTCATGTGGTCTGAAGCTGATATGCAGAACAAGGGAGGATTTTTAGCTTCATTAATTTCTAAA......................................................................................................CAGGTTGAAAAGCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E397686" ref_strand="+" ref_description="SGN-E397686 [TUS-46-B7]">
      <seq>cgggtaggctcccattctgattttcccatcagtggcaacttgcatccatctgtacagtgggctgaggaggaatctgaagttgatcctaatgaacttgctcttatcaaagtagcctttgtcagaaatgtacctcctggtgctgatgaagattacttgaagaagctctttcagccctttggcaatgtagagaaggttactctctccaggaagggtagttccaccattggatttgtttacttccataagcgatctgatcttgacaatgctattaaaggattgaatgagaaaactgtacaagggccaaggggaggtccctcaagcaagattcaggtcgaagttgcgaggccaacgtgataagaacaggaaacgaggtcgtgaggatcaaaaaatgtccagtaacattgagagtcattccaagcttttgaaggatgatccaaatgttgagatggttgggggtcctatatcaaaagctcacccggtgatgcatctatcggatgaagtggattatttggatccttatgaagctgctgtaattgccctacctgtgcttgtcaaggaccgtttaggtccgatcttgccggcttggtattgctactctatatgaaaatagatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="60788" stop="56248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60488" g_stop="60387" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60386" i_stop="60295" i_length="92">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60294" g_stop="60214" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="183" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60213" i_stop="60098" i_length="116">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.525" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60097" g_stop="60029" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="252" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60028" i_stop="57986" i_length="2043">
            <donor d_prob="0.895" d_score="0.98"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57985" g_stop="57908" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="330" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57907" i_stop="57805" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57804" g_stop="57640" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="496" r_length="166" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57639" i_stop="56655" i_length="985">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56654" g_stop="56547" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="605" r_length="109" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E397686" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60488" e_stop="60387"/>
          <exon e_start="60294" e_stop="60214"/>
          <exon e_start="60097" e_stop="60029"/>
          <exon e_start="57985" e_stop="57908"/>
          <exon e_start="57804" e_stop="57640"/>
          <exon e_start="56654" e_stop="56547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGTAGGCTCCCAATCTGATTTTCTCATCGGTGGCAACTTGCATCCATCTGTACAGTGGGCTGAGGAGGAATCTGAAGTTGATCCTAATGAACTTGCTCAGGTTTCTTCCAATCGTCCATTATTAAGATATTTAGAGAATGAAAATTTCTTAGATTTCTGTCATTTTCACCTTGCCTTTGTTTGGATTGTCAGATCAAAGTAGCCTTTGTCAGAAATGTACCTCCTGGTGCTGATGAAGATTACTTGAAGAAGCTCTTTCAGCCCTTTGGCAATGTATTATACCTTGCAGTTTCATTTTGATGTTTTCCCGATTACTCCAGTTGCATTGAAAATTCAAAAAGTTGAACTCTCTGATGACATCTACCATACATATGGTTAATATATCTCAGGTAGAGAAGGTTACTCTCTCCAGGAAGGGTAGTTCCACCATTGGATTTGTTTACTTCGATAAGCGATCTGTAAGTTCTGCCATGTCATTGTTAGTAGGCGTTTGACTTTGATTCTTGGAGTTCTACTCCTGTTCCGACTACTAATTTCAACCCCCCCTTGTAATTTTGTTGAATGGGTACCTTATTTTATATTTTGTCCGCCTTCAAAATAAAAAACCTAGAACAAGAAAACAAATTGACTATTTTGAATTTCAAATTTAGGTTAAAGTTCATGCAGAATGTAGTCTTCGACACCTAATGATTGAACATTTTTAGTTTTCAGAGATAGTCTCCCTTCCCCAATCAAACAGCCTTCTTTTGAAAGTTAGAGTCCATATCTGATTTGTCCATACCTCCCTAACTGTAGCTTCTTGCTGTTGATTAATGCTGTATATATCAGGATACAGGGTCTTCAGAGATCCTCTACCCAATTAGTCATCTTCCCAGAAGGCTATCTTTATACCATTGCCTACTTTGAAACTGGTTTTCAAGCTGGATTTGGACCATAGATTACTGATGGTTTTCCACAGACCGACACCATAAGTACTGCTGACTTCTTTAGTTATCCACACCCCTTCCATGTCATACTTAGCTTTGATTACCCTTTTCCACAGAGACTGCTCATCAGAGACAAATCTCCATAGCCATATTATCTGCAAACTTCGATTTTGGATTCTCAGGTTCTTAATTCCAGGCATCCTTCCTTCTTACTGAGTAGAAGGTCATTCCATTTCACTTGGTGGATCTTCGTTTGTCACTATTGCCTTCCAAATGAAGTTTCTTCTTAGTGCATCAATTCTGTCGACCACATTTACAGGAATTGGGAACAGAGACATCAAGTAAGTAGGCATAGCATCTAGGACAGCATTGATGAGCACTACTCTGCCTCCCAATGATAAATACTGGCTCTTCCAATTAGATAGCTTCTTCTCACACTCTTTCAACCTCTCCATTCCATATCTCCTGAGATCTACTCTTTGTCCCAAGAAGCATTCCTAGGCAAACAGCGGCTATTTCTCCAATCCTTCCTAGAATCTGAGTTGGCTCTTGGAGATCTAAGATTTCATTCACTGGTTAAACAAAACTGTTATTCCAGTTGATGTTTAGAAAGTGCATATTAATCTATTGAACTGATCATCCGTCTTCATTGTCAACTCTTCGATATGATGCATAGATCCATCGGAGCACTTTATGCCAAACACTACTTTTATATGTCTTCATTGTTCCTCTCATTCCTGAATCTACAATGTCTCTTCTCATCTTCTTCACATTCAGTAATCTCTAGCCCCATTACGACATTCTCTGTTGACTATGACTCCTTTACCCTTAATTGTGTCCATTAGCACTGTAAATAATAAATGCTCTCACAGTTCTCTTACTCGCTATGTAATTTTAATCATCTAATTATCTTTATTCATATTGAAATATTGACGGTAGATTAAATTGCCAAGTGATGTTAAGAGGTAAGCTGTTTGTGCCTGGTCAACTACAAGAGATTCTTCCAAACCTATGGCAACAAAGATTAGCTGCCAGGCAATTTTGGAGCTGATTAAGGTGGTGGGACAATTACCTTAACCCTCGATATTCAATGGAGTAGGCTAATGCTAGGGGATCTATATAGTGAGGGCTCAAGGAGGTGAATTCAATGGGCAGTGGGAGAAGGGACTGATGTCCTTAAAAGGGGTGTTTTGTCTTCATACATGAGCGGGTGTGTGAGAGAGTAACAGAAAGTTTTGCAATGGAGCCACTTGAAAATTTCTTGAATCACAGTTTGTCATTAGTTTCCTACCATTAATATGCTTGCAAGTCTTGTTCAACATCATCAAAGCTACTGCTACTTGTGATGAATAATAGACAATTAGTATTCTTCTTGTCTAGAGTCAGTACAATAAACTAGAAGGATATGATCCATATAGTAGCATTGAATATCAATTCTGCGGTATGCTTTTATTAGGGGACACTAGAAAAAAAAAAGGGACCCTTAAAATTGCAATTTCGCTTTATTATAGCTGACATTGTCTTTCTTTTGTTTCTTTTCCTACCCCCATCTACCAACGAATGCCTCGAGGATAGGATCTTGACAATGCTATTAAAGGATTGAATGAGAAAACTGTACAAGGGCCAAGGGGAGGTCCCTCAAGCAAGATTCAGGTGATTTTTGTCCTTTCTAGTTTTCGTAAGTTGTCCAAGCTGATATCTTCAACAATAGTTTACAGATATGTAATATTGATGATTAATTATGATTTGCTAACAGGTCGAAGTTGCGAGGCCAAC-TGATAAGAACAGGAAACGAGGTCGTGAGGATCAAAAAATGTCCAGTAACATTGAGAGTCATTCCAAGCTTTTGAAGGATGATCCAAATGTTGAGATGGTTGGGGGTCCTAAATCAAAAGCTCAACCGGTGATGCATCTATCAGATGTTAGTTTCTTTTTTGATATCTCAGATGTCTCGTCTCCTTTAATATATTTTATTGGCATTTTAATGTTGCAAATATTTGCCGGTACAATTTCTTCGAAAATAAAGTAGAAGCGGCTCTGATAGAAATTTCCTGGTTTGCACTGGGCAAAGCTTATATGATGCTTCTTCTTTGTAGTATACAGTCAGTTCTTTTCAAATATACAACTAAGGCCGCAATCTCAAGCTAGTCGGGGTCACCATATGAATTTACACTATCTATTGCACACTATCTGAACCTATTTCATTGGATAATCTGTAACTTGAAGCATGGTATTAGACGTTCTCTAAATCTGCACGGATTCATGGGACTGTAAGTGTTTGAGATAAGCTCGTTTTGTGATTTTAGGTCCTTAAGTAAATTCATTCTATGAGATTTTTGGGTCTTTAAGATAACTTCATTTTATGTGATTTTAGGTGTACTTCATTTCTTTTCATTTGGACTCTATGTAGGACATGACCGAATTGTCTCAAGAGACCCTTCACTTTGTTCTCTATTTGTGCTACTTACACCTTATGGCGTATGACCATTCCTGATTTTATCTAATGTTGTATGATGCATCTATCTTAACATTAAAATTTCTGCAACACTTATGTTATGGATACGGGACCTTAGAGGACTGACATTCACTCCCATATAACAATGCTAGTCCAGTAATAGTTTTGTAGAACTTGTCTTTTGCTCTTGTAAATATCCTCCTAGTGCATAATATTCTGGTAGCACTCCACTTCAACCATGGAGGTTTGATGGGATGGGAATCCCATATCAAGAAAATATAATAAGAATAATAATATTGTGTTCAATGTTATGAACATAAATGCTTGAAGCGAGTCTATTTGAAGTTATTGTCAGCTGCATGATTGAACTGTTTAAGCCCAATTTGATTTGAATGGTTGTTATTTTCCATTCAACTCTGAATCTGTCATCTTATACTTTTTCTTCAATCAGGAAATGGATTATTTGGATCCTTATGAAGCTGCTGTAATTGCACTACCTGTGCTTGTCAAGGAGCGTTTAGTTCGGATCTTG-CGGCTTGGTATTGCTACTAGATATGAT</genome_strand>
        <mrna_strand>CGGGTAGGCTCCCATTCTGATTTTCCCATCAGTGGCAACTTGCATCCATCTGTACAGTGGGCTGAGGAGGAATCTGAAGTTGATCCTAATGAACTTGCTCTT............................................................................................ATCAAAGTAGCCTTTGTCAGAAATGTACCTCCTGGTGCTGATGAAGATTACTTGAAGAAGCTCTTTCAGCCCTTTGGCAAT....................................................................................................................GTAGAGAAGGTTACTCTCTCCAGGAAGGGTAGTTCCACCATTGGATTTGTTTACTTCCATAAGCGATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTGACAATGCTATTAAAGGATTGAATGAGAAAACTGTACAAGGGCCAAGGGGAGGTCCCTCAAGCAAGATTCAG.......................................................................................................GTCGAAGTTGCGAGGCCAACGTGATAAGAACAGGAAACGAGGTCGTGAGGATCAAAAAATGTCCAGTAACATTGAGAGTCATTCCAAGCTTTTGAAGGATGATCCAAATGTTGAGATGGTTGGGGGTCCTATATCAAAAGCTCACCCGGTGATGCATCTATCGGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGATTATTTGGATCCTTATGAAGCTGCTGTAATTGCCCTACCTGTGCTTGTCAAGGACCGTTTAGGTCCGATCTTGCCGGCTTGGTATTGCTACTCTATATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393780" ref_strand="+" ref_description="SGN-E393780 [TUS-14-C19]">
      <seq>cgggtaggctcccaatctgattttctcatcggtggcaacttgcatccatctgtacagtgggctgaggaggaatctgaagttgatcctaatgaacttgctcagatcaaagtagcctttgtcagaaatgtacctcctggtgctgatgaagattacttgaagaagctctttcagccctttggcaatgtagagaaggttactctctccaggaagggtagttccaccattggatttgtttacttcgataagcgatctgatcttgacaatgctattaaaggattgaatgagaaaactgtacaagggccaaggggaggtccctcaagcaagattcaggtcgaagttgcgaggccaactgataagaacaggaaacgaggtcgtgaggatcaaaaaatgtccagtaacattgagagtcattccaagcttttgaaggatgatccaaatgttgagatggttgggggtcctaaatcaaaagctcaaccggtgatgcatctatcagatgaaatggattatttggatccttatgaagctgctgtaattgcactacctgtgcttgtcaaggagcgtttagttcggatcttgcggcttggtattgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="60788" stop="56256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60488" g_stop="60387" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60386" i_stop="60295" i_length="92">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60294" g_stop="60214" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="183" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60213" i_stop="60098" i_length="116">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.525" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60097" g_stop="60029" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="252" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60028" i_stop="57986" i_length="2043">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57985" g_stop="57908" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="330" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57907" i_stop="57805" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57804" g_stop="57640" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="495" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57639" i_stop="56655" i_length="985">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56654" g_stop="56556" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="594" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E393780" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60488" e_stop="60387"/>
          <exon e_start="60294" e_stop="60214"/>
          <exon e_start="60097" e_stop="60029"/>
          <exon e_start="57985" e_stop="57908"/>
          <exon e_start="57804" e_stop="57640"/>
          <exon e_start="56654" e_stop="56556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGTAGGCTCCCAATCTGATTTTCTCATCGGTGGCAACTTGCATCCATCTGTACAGTGGGCTGAGGAGGAATCTGAAGTTGATCCTAATGAACTTGCTCAGGTTTCTTCCAATCGTCCATTATTAAGATATTTAGAGAATGAAAATTTCTTAGATTTCTGTCATTTTCACCTTGCCTTTGTTTGGATTGTCAGATCAAAGTAGCCTTTGTCAGAAATGTACCTCCTGGTGCTGATGAAGATTACTTGAAGAAGCTCTTTCAGCCCTTTGGCAATGTATTATACCTTGCAGTTTCATTTTGATGTTTTCCCGATTACTCCAGTTGCATTGAAAATTCAAAAAGTTGAACTCTCTGATGACATCTACCATACATATGGTTAATATATCTCAGGTAGAGAAGGTTACTCTCTCCAGGAAGGGTAGTTCCACCATTGGATTTGTTTACTTCGATAAGCGATCTGTAAGTTCTGCCATGTCATTGTTAGTAGGCGTTTGACTTTGATTCTTGGAGTTCTACTCCTGTTCCGACTACTAATTTCAACCCCCCCTTGTAATTTTGTTGAATGGGTACCTTATTTTATATTTTGTCCGCCTTCAAAATAAAAAACCTAGAACAAGAAAACAAATTGACTATTTTGAATTTCAAATTTAGGTTAAAGTTCATGCAGAATGTAGTCTTCGACACCTAATGATTGAACATTTTTAGTTTTCAGAGATAGTCTCCCTTCCCCAATCAAACAGCCTTCTTTTGAAAGTTAGAGTCCATATCTGATTTGTCCATACCTCCCTAACTGTAGCTTCTTGCTGTTGATTAATGCTGTATATATCAGGATACAGGGTCTTCAGAGATCCTCTACCCAATTAGTCATCTTCCCAGAAGGCTATCTTTATACCATTGCCTACTTTGAAACTGGTTTTCAAGCTGGATTTGGACCATAGATTACTGATGGTTTTCCACAGACCGACACCATAAGTACTGCTGACTTCTTTAGTTATCCACACCCCTTCCATGTCATACTTAGCTTTGATTACCCTTTTCCACAGAGACTGCTCATCAGAGACAAATCTCCATAGCCATATTATCTGCAAACTTCGATTTTGGATTCTCAGGTTCTTAATTCCAGGCATCCTTCCTTCTTACTGAGTAGAAGGTCATTCCATTTCACTTGGTGGATCTTCGTTTGTCACTATTGCCTTCCAAATGAAGTTTCTTCTTAGTGCATCAATTCTGTCGACCACATTTACAGGAATTGGGAACAGAGACATCAAGTAAGTAGGCATAGCATCTAGGACAGCATTGATGAGCACTACTCTGCCTCCCAATGATAAATACTGGCTCTTCCAATTAGATAGCTTCTTCTCACACTCTTTCAACCTCTCCATTCCATATCTCCTGAGATCTACTCTTTGTCCCAAGAAGCATTCCTAGGCAAACAGCGGCTATTTCTCCAATCCTTCCTAGAATCTGAGTTGGCTCTTGGAGATCTAAGATTTCATTCACTGGTTAAACAAAACTGTTATTCCAGTTGATGTTTAGAAAGTGCATATTAATCTATTGAACTGATCATCCGTCTTCATTGTCAACTCTTCGATATGATGCATAGATCCATCGGAGCACTTTATGCCAAACACTACTTTTATATGTCTTCATTGTTCCTCTCATTCCTGAATCTACAATGTCTCTTCTCATCTTCTTCACATTCAGTAATCTCTAGCCCCATTACGACATTCTCTGTTGACTATGACTCCTTTACCCTTAATTGTGTCCATTAGCACTGTAAATAATAAATGCTCTCACAGTTCTCTTACTCGCTATGTAATTTTAATCATCTAATTATCTTTATTCATATTGAAATATTGACGGTAGATTAAATTGCCAAGTGATGTTAAGAGGTAAGCTGTTTGTGCCTGGTCAACTACAAGAGATTCTTCCAAACCTATGGCAACAAAGATTAGCTGCCAGGCAATTTTGGAGCTGATTAAGGTGGTGGGACAATTACCTTAACCCTCGATATTCAATGGAGTAGGCTAATGCTAGGGGATCTATATAGTGAGGGCTCAAGGAGGTGAATTCAATGGGCAGTGGGAGAAGGGACTGATGTCCTTAAAAGGGGTGTTTTGTCTTCATACATGAGCGGGTGTGTGAGAGAGTAACAGAAAGTTTTGCAATGGAGCCACTTGAAAATTTCTTGAATCACAGTTTGTCATTAGTTTCCTACCATTAATATGCTTGCAAGTCTTGTTCAACATCATCAAAGCTACTGCTACTTGTGATGAATAATAGACAATTAGTATTCTTCTTGTCTAGAGTCAGTACAATAAACTAGAAGGATATGATCCATATAGTAGCATTGAATATCAATTCTGCGGTATGCTTTTATTAGGGGACACTAGAAAAAAAAAAGGGACCCTTAAAATTGCAATTTCGCTTTATTATAGCTGACATTGTCTTTCTTTTGTTTCTTTTCCTACCCCCATCTACCAACGAATGCCTCGAGGATAGGATCTTGACAATGCTATTAAAGGATTGAATGAGAAAACTGTACAAGGGCCAAGGGGAGGTCCCTCAAGCAAGATTCAGGTGATTTTTGTCCTTTCTAGTTTTCGTAAGTTGTCCAAGCTGATATCTTCAACAATAGTTTACAGATATGTAATATTGATGATTAATTATGATTTGCTAACAGGTCGAAGTTGCGAGGCCAACTGATAAGAACAGGAAACGAGGTCGTGAGGATCAAAAAATGTCCAGTAACATTGAGAGTCATTCCAAGCTTTTGAAGGATGATCCAAATGTTGAGATGGTTGGGGGTCCTAAATCAAAAGCTCAACCGGTGATGCATCTATCAGATGTTAGTTTCTTTTTTGATATCTCAGATGTCTCGTCTCCTTTAATATATTTTATTGGCATTTTAATGTTGCAAATATTTGCCGGTACAATTTCTTCGAAAATAAAGTAGAAGCGGCTCTGATAGAAATTTCCTGGTTTGCACTGGGCAAAGCTTATATGATGCTTCTTCTTTGTAGTATACAGTCAGTTCTTTTCAAATATACAACTAAGGCCGCAATCTCAAGCTAGTCGGGGTCACCATATGAATTTACACTATCTATTGCACACTATCTGAACCTATTTCATTGGATAATCTGTAACTTGAAGCATGGTATTAGACGTTCTCTAAATCTGCACGGATTCATGGGACTGTAAGTGTTTGAGATAAGCTCGTTTTGTGATTTTAGGTCCTTAAGTAAATTCATTCTATGAGATTTTTGGGTCTTTAAGATAACTTCATTTTATGTGATTTTAGGTGTACTTCATTTCTTTTCATTTGGACTCTATGTAGGACATGACCGAATTGTCTCAAGAGACCCTTCACTTTGTTCTCTATTTGTGCTACTTACACCTTATGGCGTATGACCATTCCTGATTTTATCTAATGTTGTATGATGCATCTATCTTAACATTAAAATTTCTGCAACACTTATGTTATGGATACGGGACCTTAGAGGACTGACATTCACTCCCATATAACAATGCTAGTCCAGTAATAGTTTTGTAGAACTTGTCTTTTGCTCTTGTAAATATCCTCCTAGTGCATAATATTCTGGTAGCACTCCACTTCAACCATGGAGGTTTGATGGGATGGGAATCCCATATCAAGAAAATATAATAAGAATAATAATATTGTGTTCAATGTTATGAACATAAATGCTTGAAGCGAGTCTATTTGAAGTTATTGTCAGCTGCATGATTGAACTGTTTAAGCCCAATTTGATTTGAATGGTTGTTATTTTCCATTCAACTCTGAATCTGTCATCTTATACTTTTTCTTCAATCAGGAAATGGATTATTTGGATCCTTATGAAGCTGCTGTAATTGCACTACCTGTGCTTGTCAAGGAGCGTTTAGTTCGGATCTTGCGGCTTGGTATTGCTACT</genome_strand>
        <mrna_strand>CGGGTAGGCTCCCAATCTGATTTTCTCATCGGTGGCAACTTGCATCCATCTGTACAGTGGGCTGAGGAGGAATCTGAAGTTGATCCTAATGAACTTGCTCAG............................................................................................ATCAAAGTAGCCTTTGTCAGAAATGTACCTCCTGGTGCTGATGAAGATTACTTGAAGAAGCTCTTTCAGCCCTTTGGCAAT....................................................................................................................GTAGAGAAGGTTACTCTCTCCAGGAAGGGTAGTTCCACCATTGGATTTGTTTACTTCGATAAGCGATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTGACAATGCTATTAAAGGATTGAATGAGAAAACTGTACAAGGGCCAAGGGGAGGTCCCTCAAGCAAGATTCAG.......................................................................................................GTCGAAGTTGCGAGGCCAACTGATAAGAACAGGAAACGAGGTCGTGAGGATCAAAAAATGTCCAGTAACATTGAGAGTCATTCCAAGCTTTTGAAGGATGATCCAAATGTTGAGATGGTTGGGGGTCCTAAATCAAAAGCTCAACCGGTGATGCATCTATCAGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTATTTGGATCCTTATGAAGCTGCTGTAATTGCACTACCTGTGCTTGTCAAGGAGCGTTTAGTTCGGATCTTGCGGCTTGGTATTGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202329" ref_strand="+" ref_description="SGN-E202329 [cLEC-6-F11]">
      <seq>gggtaggctcccaatctgattttctcatcggtggcaacttgcatccatctgtacagtgggctgaggaggaatctgaagttgatcctaatgaacttgctcagatcaaagtagcctttgtcagaaatgtacctcctggcgctgatgaagattacttgaagaagctctttcagccctttggcaatgtagagaaggttactctctccaggaagggtagttccaccattggatttgtttacttcgataagcgatctgatcttgacaatgctattaaaggattgaatgagaaaactgtacaagggccaaggggaggtccctcaagcaagattcaggtcgaagttgcgaggccaactgataagaacaggaaacgaggtcgtgaggatcaaaaaatgtccagtaacattgagagtcattccaagcttttgaaggatgatccaaatgttgagatggttgggggtcctaaatcaaaagctcaaccggtgatgcatctatcagatgaaatggattatttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="60787" stop="57322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60487" g_stop="60387" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60386" i_stop="60295" i_length="92">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60294" g_stop="60214" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="182" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60213" i_stop="60098" i_length="116">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.525" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60097" g_stop="60029" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="251" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60028" i_stop="57986" i_length="2043">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57985" g_stop="57908" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="329" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57907" i_stop="57805" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57804" g_stop="57640" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="494" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E202329" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60487" e_stop="60387"/>
          <exon e_start="60294" e_stop="60214"/>
          <exon e_start="60097" e_stop="60029"/>
          <exon e_start="57985" e_stop="57908"/>
          <exon e_start="57804" e_stop="57640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTAGGCTCCCAATCTGATTTTCTCATCGGTGGCAACTTGCATCCATCTGTACAGTGGGCTGAGGAGGAATCTGAAGTTGATCCTAATGAACTTGCTCAGGTTTCTTCCAATCGTCCATTATTAAGATATTTAGAGAATGAAAATTTCTTAGATTTCTGTCATTTTCACCTTGCCTTTGTTTGGATTGTCAGATCAAAGTAGCCTTTGTCAGAAATGTACCTCCTGGTGCTGATGAAGATTACTTGAAGAAGCTCTTTCAGCCCTTTGGCAATGTATTATACCTTGCAGTTTCATTTTGATGTTTTCCCGATTACTCCAGTTGCATTGAAAATTCAAAAAGTTGAACTCTCTGATGACATCTACCATACATATGGTTAATATATCTCAGGTAGAGAAGGTTACTCTCTCCAGGAAGGGTAGTTCCACCATTGGATTTGTTTACTTCGATAAGCGATCTGTAAGTTCTGCCATGTCATTGTTAGTAGGCGTTTGACTTTGATTCTTGGAGTTCTACTCCTGTTCCGACTACTAATTTCAACCCCCCCTTGTAATTTTGTTGAATGGGTACCTTATTTTATATTTTGTCCGCCTTCAAAATAAAAAACCTAGAACAAGAAAACAAATTGACTATTTTGAATTTCAAATTTAGGTTAAAGTTCATGCAGAATGTAGTCTTCGACACCTAATGATTGAACATTTTTAGTTTTCAGAGATAGTCTCCCTTCCCCAATCAAACAGCCTTCTTTTGAAAGTTAGAGTCCATATCTGATTTGTCCATACCTCCCTAACTGTAGCTTCTTGCTGTTGATTAATGCTGTATATATCAGGATACAGGGTCTTCAGAGATCCTCTACCCAATTAGTCATCTTCCCAGAAGGCTATCTTTATACCATTGCCTACTTTGAAACTGGTTTTCAAGCTGGATTTGGACCATAGATTACTGATGGTTTTCCACAGACCGACACCATAAGTACTGCTGACTTCTTTAGTTATCCACACCCCTTCCATGTCATACTTAGCTTTGATTACCCTTTTCCACAGAGACTGCTCATCAGAGACAAATCTCCATAGCCATATTATCTGCAAACTTCGATTTTGGATTCTCAGGTTCTTAATTCCAGGCATCCTTCCTTCTTACTGAGTAGAAGGTCATTCCATTTCACTTGGTGGATCTTCGTTTGTCACTATTGCCTTCCAAATGAAGTTTCTTCTTAGTGCATCAATTCTGTCGACCACATTTACAGGAATTGGGAACAGAGACATCAAGTAAGTAGGCATAGCATCTAGGACAGCATTGATGAGCACTACTCTGCCTCCCAATGATAAATACTGGCTCTTCCAATTAGATAGCTTCTTCTCACACTCTTTCAACCTCTCCATTCCATATCTCCTGAGATCTACTCTTTGTCCCAAGAAGCATTCCTAGGCAAACAGCGGCTATTTCTCCAATCCTTCCTAGAATCTGAGTTGGCTCTTGGAGATCTAAGATTTCATTCACTGGTTAAACAAAACTGTTATTCCAGTTGATGTTTAGAAAGTGCATATTAATCTATTGAACTGATCATCCGTCTTCATTGTCAACTCTTCGATATGATGCATAGATCCATCGGAGCACTTTATGCCAAACACTACTTTTATATGTCTTCATTGTTCCTCTCATTCCTGAATCTACAATGTCTCTTCTCATCTTCTTCACATTCAGTAATCTCTAGCCCCATTACGACATTCTCTGTTGACTATGACTCCTTTACCCTTAATTGTGTCCATTAGCACTGTAAATAATAAATGCTCTCACAGTTCTCTTACTCGCTATGTAATTTTAATCATCTAATTATCTTTATTCATATTGAAATATTGACGGTAGATTAAATTGCCAAGTGATGTTAAGAGGTAAGCTGTTTGTGCCTGGTCAACTACAAGAGATTCTTCCAAACCTATGGCAACAAAGATTAGCTGCCAGGCAATTTTGGAGCTGATTAAGGTGGTGGGACAATTACCTTAACCCTCGATATTCAATGGAGTAGGCTAATGCTAGGGGATCTATATAGTGAGGGCTCAAGGAGGTGAATTCAATGGGCAGTGGGAGAAGGGACTGATGTCCTTAAAAGGGGTGTTTTGTCTTCATACATGAGCGGGTGTGTGAGAGAGTAACAGAAAGTTTTGCAATGGAGCCACTTGAAAATTTCTTGAATCACAGTTTGTCATTAGTTTCCTACCATTAATATGCTTGCAAGTCTTGTTCAACATCATCAAAGCTACTGCTACTTGTGATGAATAATAGACAATTAGTATTCTTCTTGTCTAGAGTCAGTACAATAAACTAGAAGGATATGATCCATATAGTAGCATTGAATATCAATTCTGCGGTATGCTTTTATTAGGGGACACTAGAAAAAAAAAAGGGACCCTTAAAATTGCAATTTCGCTTTATTATAGCTGACATTGTCTTTCTTTTGTTTCTTTTCCTACCCCCATCTACCAACGAATGCCTCGAGGATAGGATCTTGACAATGCTATTAAAGGATTGAATGAGAAAACTGTACAAGGGCCAAGGGGAGGTCCCTCAAGCAAGATTCAGGTGATTTTTGTCCTTTCTAGTTTTCGTAAGTTGTCCAAGCTGATATCTTCAACAATAGTTTACAGATATGTAATATTGATGATTAATTATGATTTGCTAACAGGTCGAAGTTGCGAGGCCAACTGATAAGAACAGGAAACGAGGTCGTGAGGATCAAAAAATGTCCAGTAACATTGAGAGTCATTCCAAGCTTTTGAAGGATGATCCAAATGTTGAGATGGTTGGGGGTCCTAAATCAAAAGCTCAACCGGTGATGCATCTATCAGAT</genome_strand>
        <mrna_strand>GGGTAGGCTCCCAATCTGATTTTCTCATCGGTGGCAACTTGCATCCATCTGTACAGTGGGCTGAGGAGGAATCTGAAGTTGATCCTAATGAACTTGCTCAG............................................................................................ATCAAAGTAGCCTTTGTCAGAAATGTACCTCCTGGCGCTGATGAAGATTACTTGAAGAAGCTCTTTCAGCCCTTTGGCAAT....................................................................................................................GTAGAGAAGGTTACTCTCTCCAGGAAGGGTAGTTCCACCATTGGATTTGTTTACTTCGATAAGCGATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTGACAATGCTATTAAAGGATTGAATGAGAAAACTGTACAAGGGCCAAGGGGAGGTCCCTCAAGCAAGATTCAG.......................................................................................................GTCGAAGTTGCGAGGCCAACTGATAAGAACAGGAAACGAGGTCGTGAGGATCAAAAAATGTCCAGTAACATTGAGAGTCATTCCAAGCTTTTGAAGGATGATCCAAATGTTGAGATGGTTGGGGGTCCTAAATCAAAAGCTCAACCGGTGATGCATCTATCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318390" ref_strand="+" ref_description="SGN-E318390 [cTOA-29-J2]">
      <seq>caacttctgcatagaaaaatagtacgatgatatgcagggaaaactgaactccgaaacgacaactgatttgagggcttagggttccgaccgaatcactctcggattgagaattcattggagacttcattttttcagaacaggaaatgaaagggacagagatttttgttggtggtttggcccgtactactactgaaagcaaaattcacgaggtattttcttcatgcggtgagattgtggaaataaggttgataaaagaccagataggcaatgccaaggggttctgctttgtacgatttgcaacaaaatatgctgctgacaaagctctgaaggaaaaatctggatatgtgctagatgggaagaaaattgggattcgcccctcagttgagcaggacacactatttcttggaaatcttaacaaaggttggggtgctgaggaatttgagagtattgtgcgccaggtttttccagatgttacatctgttgatcttgcaattcttggagatgtccaacttggtcagaagcaacggaatcggggatttgcctttgtgaaattttcatctcatgctgctgcagctcgtgctttacgggtaggctcccaatctgattttctcatcggtggcaacttgcatccatctgtacagtgggctgaggaggaatctgaagttgatcctaatgaacttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="67890" stop="60090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67590" g_stop="67456" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67455" i_stop="67090" i_length="366">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67089" g_stop="67016" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="209" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67015" i_stop="65511" i_length="1505">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65510" g_stop="65445" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="275" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65444" i_stop="65304" i_length="141">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65303" g_stop="65232" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="347" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65231" i_stop="63880" i_length="1352">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63879" g_stop="63807" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="420" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63806" i_stop="63378" i_length="429">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63377" g_stop="63340" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="458" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63339" i_stop="63258" i_length="82">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63257" g_stop="63150" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="566" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="63149" i_stop="60507" i_length="2643">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="60506" g_stop="60390" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="683" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E318390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67590" e_stop="67456"/>
          <exon e_start="67089" e_stop="67016"/>
          <exon e_start="65510" e_stop="65445"/>
          <exon e_start="65303" e_stop="65232"/>
          <exon e_start="63879" e_stop="63807"/>
          <exon e_start="63377" e_stop="63340"/>
          <exon e_start="63257" e_stop="63150"/>
          <exon e_start="60506" e_stop="60390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCTGCATAGAAAAATAGTACGATGATATGCAGGGAAAACTGAACTCCGAAACGACAACTGATTTGAGGGCTTAGGGTTCCGACCGAATCACTCTCGGATTGAGAATTCATTGGAGACTTCATTTTTTCAGGTAATTAATTTGTTATAAAAACAATTCATATAATTAGAGTGGATAAAAGTTAGATTGTTTTTCCAGAAAAGTTGGAATGCCATACATTTGTTTGGCCAAAGTAAAACTGAGAATTTTGATGCAAATCATTGAATTGCTGACAAAAAAGCAGCCTTAGTATAGCTCATCACTGGTAGAACCCTAAAAGAGCTGAACACGCAGTCTCTTTTCGTTCACTGGGCGGGGCGAGTTTATATATTAGTTCACTGAAGTTGTGATTTCTTTTTCGATATCTTGAATAATAAAGGGTGTTGAATGATGTGTATTCACATACGCAATGTGGGTTTTCACCTTTAATGGGCTGTTCTTGTTTTTCTGGCTTAGCAGAACAGGAAATGAAAGGGACAGAGATTTTTGTTGGTGGTTTGGCCCGTACTACTACTGAAAGCAAAATTCACGAGGTTTGTTTCGGATTTATGTTACGTGATCTATTTGGTTCCTCAAGTTTATTTTTTTCATTTTTATATTTTTGGTTCAAGTTTGTTTTTTCTACGTTGAGCTTGTTTTGATTTTCTTTTTTTTGTGGATAAAACAAGTAAGTATTATTAACTGTGTGAGCAGTTGCTGAGAGTTACAAAAAGTGCTTAAAGGATGTTCCGAAGAACAAATATGATATCTACATTGTTAACAATTTCAACTTATCAACAATATCATTTTAAAGTTTTATGATACCAAAAACAAGGTCAGTTAAACACTTATGCATCAGTATATGACTAGGGTAAGTTTCACAATCAAAACACTTACCAGTGCTTCACTCGGCAGAGTCCACATGATTCATGTTGGGGTTGTAAACAAAATCTTGTGTGGAGTTTCTTGTGTGTTCCTACCAGCTGCATGGAGATGGTTATATCCAGAGTCCTTCACATTACTCGATGGACCCTAATTAGAATTTTTTTTTTACAGAATGATCTCATAACTCCCTCGCTTCCTTAAAATGTGAAAGAGATGATTAGCATCATCGATATCCTTTTCATACATATAACACTGATCTAATGGGATAAAACAGTCTCATTCTCTTGTTGTCTTTGAGTGAGATAAACATCATATACAAAGTCCAACTAAAGCATGTGACTTTGGGTGGAGCTTTACCTTGCGCAACAGTTACCCAGGCCATTCACTGGATGCCTTCAGCAGATTATGATAGTACTAGACTACTAGTTAAGTATAGCATTGCTTTGCACGTATGTTGCGTTAATTAATAACAAATGTATATAAAAAGAATAAGTTGTTGTGTGTATATTATGACATTGAGTACAATTTTTTCTTAAAAACAATAATGTAAAGCTGTGCGAATGTTGTAATATTTTAGGTTAAGTCTCCTATTGACTTGAAGGATTGAAGTTAGGCTAGATTGATTGTTCAATCAAAGGTATAAATTCACTGAATTCTAAGGATGAGTAGTTTTCTGCTGTCTTTGAGGGCTTAGTTGGGTCATTTTTTGAACAGACCATACTTCTTTTGAGGCAAGTAGTGTTTATCCCTTATTATGGTAATTGACGCAACCAATTGCTCCTTTTTGATCCTTATATCATAAATTGTTATTCTCATGAACTATATTACAAAATGGATATTATTTTAACTTCTATGTAATAATAATCAATTTTGTTCTTAAATAAACTATATGATATAGTTGTTTGTCAGCTTTATTCCTCTCTCTTGGGGTTGAATTGTTAAACGTAGTTATGCCCTTTTTTGTGGTAGATCAGTTTACCTATTCACATTCTGCACTTGTGAATTTATTTTTCTTGACTCTATTTTAATCTTTAAAAAACTAACAGAACACCCCTCGGCCAAAACCTATGATTAGAGCTGGACTTCTTATCGTCAATGATTTGTAACTATTTTATATCATCACATTGTATTTGTGTCAGATTATGTGTATATATAAAACATCTGCATTTTACAGGTATTTTCTTCATGCGGTGAGATTGTGGAAATAAGGTTGATAAAAGACCAGATAGGCAATGCCAAGGTAGTCAGTATGATCTGTTTATTTGTATTACCTCTTGTTTTCATGCTTTGCCATCCCTTAAAAAAAAAGCTAAAAAAGAGACATTAGAAAAAAACACGGTTTAGATGCTAATATTGCAGTGCTCATTTGTTATGACTACAGGGGTTCTGCTTTGTACGATTTGCAACAAAATATGCTGCTGACAAAGCTCTGAAGGAAAAATCTGGATATGTGGTAAAAGGCTAACAAAGATGCATTATTTCACTGTCTTGATAAACCATTACATTATTATTGGTTATTGCGATGGATTTTGCTTTTGTGATGCTGTTATTATTCATGAATGTACATAAGAACGACCACTTACTTGGATAAGCATTAGTGTATAATTCCTAGCCGAGACTTTTACTTGATGGCTTACATCTATTTGCAAAGGTTTGCCTTCTTTTAATTCAAGAATGTGTTCCTATAAAATAATGTTAAGAAAACAATCCGACTTACTCAGAATATTGATTTTTCCCCAGAATAAAAGATTGTCTGTATAACATTTTGACACTTTAACACTTTTAACTCAACACTTGAATATTTTTCTTCATGAAGAGCTTGAACTGCACATCTTGCTTTCTTGAAAGCTCTGAATTTGTATAAATGCTGGGATTTGTTCCACCAATGGGAGCAATTGATCAGTTCCTTGTTTTTTGCCCTTTTCCCGTTTTACTTTCTTTTTTCCATTCTTTGAATAGCTACAGATACCTAATTTGGTATTTGTTCAACTATGCACGTCTTTGTATTGTTGGGTTATCTCCTTACTTAATTATGAGCATTCACTAGATTATATGTTGTATTTTATAACATAGTCATGGACCATAGATCTACTAATAGTTCCTTGGATCCAGATAGTAAGCCCCTAAAATCAGGTGGGGCGCTATGTAGATCTTAACAGGCAACAAAAGGTTGGTTGGTGCATTAAACTACCTTTCTGTTAACACATCAAGCTCTTCTTTTGGTAACGATCGTAGTTTGTCAATTCATGCTCTGCTAGCACTGATCATCGGGATGCTGTTGTATGAACTATAAAATACTTAGTAAAGTACCAAGCTAAATGTTACTATACAAAGATGGAAGGAAATTCTCAAGATATAGGATACTTTGACTCAAATTGGGTTGATTCTCCTATTGATCAACTATTTATGTTTGGATACTATGTCTTTTGTGGTGGTGACTCTGTATTATGGAACAGTAGGAATCATAACATTTGTTTTATCACATGATTCCAATAAGATAGAATTGTAAACTTACTTAGTTAATGCAAGTGAAATCTAGAAAGGTGACGTATAAAAAGGAACGGCGAGAGTATTATTTATCTGACTCATATTGGCCATTTCAAATTTTTCTTTTGATGACCGAGAAATCCCTGAGGGCCAGTTGCTCACGGTTTGAAAGTTGGTGACTGGATAAGACTACTTCTCTCTTAGTATGAAATGTTTGGAAAATATTCATCTTGTTATGAGTCTGATTGTTTGTAATCTGTTGAACAGTGAGATTTTCTCCCTATTACATTTGATATATTTTTGTGGCTATTATTTCAGCTAGATGGGAAGAAAATTGGGATTCGCCCCTCAGTTGAGCAGGACACACTATTTCTTGGAAATCTTAACAAAGGTTTGTTTCATTTTTCTTGCAAATCTATTGTCCAAGATTTATTGCCGACTTAATTAGTGTCTTTCTGTGACATTGGAGAAGCTTTATAATGACAATATCAAGTTACATTCAAATGCCTTCATTCAAAATGTGAAGATGCCATTACATAGAAGATATTTTGATCTTACAAGGACTTGCATTATCTTACAATTTTATGGGCTGATATTTCATACATATCCGTTGTCTTGATTAAATTCTCTTTTTCTTTCTCTCATTCATTTTGGGCTTTGTGCACGTGGTAGTTTATAAGGATACATTTTCCTCTCCAGAGTAGTGAATTTGAACTTTAAAGGATCTTCCTTCTACTTATGTTTTCTTTGGCACTTGTGGAAGAGACAAGTTTTTTTATAACTGTACGCATTCCTTATTGCTTGTCTGGATTATTTAAAGGTTGGGGTGCTGAGGAATTTGAGAGTATTGTGCGCCAGGTACACCTTTTAACTGCTTACAGTGCACTTTTTTAAAAATCTCTTGAAATATTGATGAATATTCATCTCTCCCTCTCTCTAGGTTTTTCCAGATGTTACATCTGTTGATCTTGCAATTCTTGGAGATGTCCAACTTGGTCAGAAGCAACGGAATCGGGGATTTGCCTTTGTGAAATTTTCATCTCATGCTGTAAGTGCCTCTGTCTATGTTTAACATTGTTAATTAGTATTATGGTTGTTGGACAATTTCAACTTTTTTGTAACATCACTTTTACTCATATCGTTGCATCTTAAATACTACAGGATAGAAGCTCAGGTTCGTGCTTTTGATTCTCAGTTCCAGAACCAAATTATGATGCCTAGGTTCTTGAGGAATCTCCCAATATGAAATAAACTCTCAGACATGTTATTAACCTCATTCTATAAACAAGAACACTCTCAGACATGTTATTCACCTCACCTTATAAAAAAAGAACACTCTCAGACATGTTATTACAGATTAAGAAAGTGAATCCTTGAATTATGATAATAGCATTCTTTTCAATCTTTAACATAAGACTGAAATGCATACCAGATATTCTAAAAACGTGAAACAAAAGCTGCAGAATTTGTTCTCTACAAAATTTTGAACACCACATGAAAATGTTATGTGTGCTAGTGAAATTGGTAAGTAACATGCTTATTAGAAACTAAAAAGGACAAAATAAAAGACGCTCCATATTTTTATGTGAATTCGAAGCGTAATGCTACTATTTTTTTTGATAACCGTGGTGTCCGAGCCAGCTTTCGCGCGCTTCGACTAATTCCATGGGATACTTGCTACCTCTATACCATTTGTATATCCACTGAACTGGTGAAGTGCTATCATCTTCTTGTACTTGTGTTGTTTTAACTTTTAGCGTCTCCAGGGCTGCTATCTCCATATGGACTTCAAAAACTCCTAATGACATCTGATCATTGATGCCTCCAATGTTCTAGTGTCCATGTTTTCATCTACTAGTCTTAAAGTACGCACTTTGCGCGTGTTTCCTATACTGAAATGTTAAATGTTAAAGCAATGAAATGATGTAGATAAGATAATTAAAATTTAATTAATTTCAATGTCTCGAATATTTAGATTTCCAACTAAATTCGAATAAGGACGAATTTGATACGTATTTTAATTGATTTTAAAATCCTAAATACTAAGAAGCATTCACATGAAAAGTATTATACTTACGTTACATAATTCAAATAGAAAATAATTATACAAGATAACATTTTAATAGATCTAAAATTCTTTTACAACCTCTTGCAGAAATGCACGGTAAGACTGCGTACTGCATACACTAGACCCTTGTGGTCAGACCCTTCCTTGGACCCCACGCATCTTAAGTGCTATCGCCTCAATATACTGTCACTTGGTTATCTCTAACAATATGGTTTCCTTCTGTGGTGCTTATATACTGTCACTTGGTTATCTCTAACAATATGCTTTCCTTCTGTGGTGCTTTAGTTTGCTGAGATCAGCTTGATCAGTTGCTTCAATTTTCTTCAATCCCATACTTCTTGCAGATATTTCCAATGTCTGACATACTATACAAAAAAGAATATTATTGGACCAATGTACAGGTCAAAAACTTATTTGCCGGTGTTAAGAATTATAGCTTATAAAATTTGTCCAATTCTACCCAATCATGAATTATTTACTAGACTTTTCCTATAAAACCAATTTTTAAGCCTTCTGTGAACAATTTACTTAATCTCCATATAATATGATAAGTCGAATATACTGCTACTAGGTCCTAAGCTAAGTTTTGATCTGTTCAAAGTAACAGTCGTTTTTTTCCTTCTAAAAGGTTATTTTACTCCAATCCCACAAAAAGGGAGAACGTTCCTTACATTTTCCAGCTCCAAACTTAGGTATCTTTGCTCAGGCCTACCAGTGCCGAGTCATTACTAGATATTCATTTGAGATGCTGGGAGAATCAAGCCACGTCTTCATCGGTGCACATCTTTTATGTTGATTTCTGTCTTACAAATGACACTTCCATATTATAGAGCCCAAACATTAAAAGCCATACAAAAAAATCCTTCTACGTCCATTTATATTATAGATAACAGTCACAAAATGTGTGAATGGGCACTCTGTTGAAGTTGTATTCTGGATCAAAGTAGCTCTAGAGCAATTGATAATCTTAAATGAAACTATTATCTTATAGATATTAGCTCTTATTTTTTGATTTATCAAAAGATACAAAGAATTTCATATACCAATCCCAGCTAGTTTAGGATTAAGGCATAGTGTTTGTTGAAATAAAAAAGAAATGCTTATATCCATAAATCTCAGTCTCAATGCCACATTTTAAAAAACAACTCCTCATTTTGGAAGTTGTAATGTCGAGCTTTGTGTCTGCCTTGATAGGATCTAGATAGCTTTTAAGTGAGCAACTAAACTTTGTTAATCCTCGAATATGAACTTAACAAACTTCATAGGAATGTAATCTGCTCAATTTACAGCAAGTTGGGTCAAAATTGGAACCCTCATTTGGCCTTTAATCTGTTGCCTTTCTGAGCTGAAATCACTGTATTTTGCTGTGCAAGTTCAAGAATCAATGAAGAAGTTTATGCTGTAATTCATACTTAAAACTCCCAAATTTATCCTTGTCTGCTTCACTGTCATGTTAACATGTTTCCCAAAAATCTCGAATATTGTGCAGTAGCCATTGATCACTGCCAAATAAATAATTCAATAAAATCCAATACTTCCATCCCATTATGAATATGTTACTCTAATGAAAACAATCCTGTAAGATCCCAAAATATAAATTTCCTTCAAAATTCTCAATCACAGGCTGCAGCTCGTGCTTTACGGGTAGGCTCCCAATCTGATTTTCTCATCGGTGGCAACTTGCATCCATCTGTACAGTGGGCTGAGGAGGAATCTGAAGTTGATCCTAATGAACTTGCT</genome_strand>
        <mrna_strand>CAACTTCTGCATAGAAAAATAGTACGATGATATGCAGGGAAAACTGAACTCCGAAACGACAACTGATTTGAGGGCTTAGGGTTCCGACCGAATCACTCTCGGATTGAGAATTCATTGGAGACTTCATTTTTTCAG..............................................................................................................................................................................................................................................................................................................................................................................AACAGGAAATGAAAGGGACAGAGATTTTTGTTGGTGGTTTGGCCCGTACTACTACTGAAAGCAAAATTCACGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTCTTCATGCGGTGAGATTGTGGAAATAAGGTTGATAAAAGACCAGATAGGCAATGCCAAG.............................................................................................................................................GGGTTCTGCTTTGTACGATTTGCAACAAAATATGCTGCTGACAAAGCTCTGAAGGAAAAATCTGGATATGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGATGGGAAGAAAATTGGGATTCGCCCCTCAGTTGAGCAGGACACACTATTTCTTGGAAATCTTAACAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGGTGCTGAGGAATTTGAGAGTATTGTGCGCCAG..................................................................................GTTTTTCCAGATGTTACATCTGTTGATCTTGCAATTCTTGGAGATGTCCAACTTGGTCAGAAGCAACGGAATCGGGGATTTGCCTTTGTGAAATTTTCATCTCATGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCTCGTGCTTTACGGGTAGGCTCCCAATCTGATTTTCTCATCGGTGGCAACTTGCATCCATCTGTACAGTGGGCTGAGGAGGAATCTGAAGTTGATCCTAATGAACTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271243" ref_strand="+" ref_description="SGN-E271243 [cLEM-5-M2]">
      <seq>caacttctgcatagaaaaatagtacgatgatatgcagggaaaactgaactccgaaacgacaactgatttgagggcttagggttccgaccgaatcactctcggattgagaattcattggagacttcattttttcagaacaggaaatgaaagggacagagatttttgttggtggtttggcccgtactactactgaaagcaaaattcacgaggtattttcttcatgcggtgagattgtggaaataaggttgataaaagaccagataggcaatgccaaggggttctgctttgtacgatttgcaacaaaatatgctgctgacaaagctctgaaggaaaaatctggatatgtgctagatgggaagaaaattgggattcgcccctcagttgagcaggacacactatttcttggaaatcttaacaaaggttggggtgctgaggaatttgagagtattgtgcgccaggtttttccagatgttacatctgttgatcttgcaattcttggagatgtccaacttggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="67890" stop="62899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67590" g_stop="67456" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67455" i_stop="67090" i_length="366">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67089" g_stop="67016" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="209" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67015" i_stop="65511" i_length="1505">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65510" g_stop="65445" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="275" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65444" i_stop="65304" i_length="141">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65303" g_stop="65232" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="347" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65231" i_stop="63880" i_length="1352">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63879" g_stop="63807" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="420" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63806" i_stop="63378" i_length="429">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63377" g_stop="63340" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="458" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63339" i_stop="63258" i_length="82">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63257" g_stop="63199" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="517" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E271243" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67590" e_stop="67456"/>
          <exon e_start="67089" e_stop="67016"/>
          <exon e_start="65510" e_stop="65445"/>
          <exon e_start="65303" e_stop="65232"/>
          <exon e_start="63879" e_stop="63807"/>
          <exon e_start="63377" e_stop="63340"/>
          <exon e_start="63257" e_stop="63199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCTGCATAGAAAAATAGTACGATGATATGCAGGGAAAACTGAACTCCGAAACGACAACTGATTTGAGGGCTTAGGGTTCCGACCGAATCACTCTCGGATTGAGAATTCATTGGAGACTTCATTTTTTCAGGTAATTAATTTGTTATAAAAACAATTCATATAATTAGAGTGGATAAAAGTTAGATTGTTTTTCCAGAAAAGTTGGAATGCCATACATTTGTTTGGCCAAAGTAAAACTGAGAATTTTGATGCAAATCATTGAATTGCTGACAAAAAAGCAGCCTTAGTATAGCTCATCACTGGTAGAACCCTAAAAGAGCTGAACACGCAGTCTCTTTTCGTTCACTGGGCGGGGCGAGTTTATATATTAGTTCACTGAAGTTGTGATTTCTTTTTCGATATCTTGAATAATAAAGGGTGTTGAATGATGTGTATTCACATACGCAATGTGGGTTTTCACCTTTAATGGGCTGTTCTTGTTTTTCTGGCTTAGCAGAACAGGAAATGAAAGGGACAGAGATTTTTGTTGGTGGTTTGGCCCGTACTACTACTGAAAGCAAAATTCACGAGGTTTGTTTCGGATTTATGTTACGTGATCTATTTGGTTCCTCAAGTTTATTTTTTTCATTTTTATATTTTTGGTTCAAGTTTGTTTTTTCTACGTTGAGCTTGTTTTGATTTTCTTTTTTTTGTGGATAAAACAAGTAAGTATTATTAACTGTGTGAGCAGTTGCTGAGAGTTACAAAAAGTGCTTAAAGGATGTTCCGAAGAACAAATATGATATCTACATTGTTAACAATTTCAACTTATCAACAATATCATTTTAAAGTTTTATGATACCAAAAACAAGGTCAGTTAAACACTTATGCATCAGTATATGACTAGGGTAAGTTTCACAATCAAAACACTTACCAGTGCTTCACTCGGCAGAGTCCACATGATTCATGTTGGGGTTGTAAACAAAATCTTGTGTGGAGTTTCTTGTGTGTTCCTACCAGCTGCATGGAGATGGTTATATCCAGAGTCCTTCACATTACTCGATGGACCCTAATTAGAATTTTTTTTTTACAGAATGATCTCATAACTCCCTCGCTTCCTTAAAATGTGAAAGAGATGATTAGCATCATCGATATCCTTTTCATACATATAACACTGATCTAATGGGATAAAACAGTCTCATTCTCTTGTTGTCTTTGAGTGAGATAAACATCATATACAAAGTCCAACTAAAGCATGTGACTTTGGGTGGAGCTTTACCTTGCGCAACAGTTACCCAGGCCATTCACTGGATGCCTTCAGCAGATTATGATAGTACTAGACTACTAGTTAAGTATAGCATTGCTTTGCACGTATGTTGCGTTAATTAATAACAAATGTATATAAAAAGAATAAGTTGTTGTGTGTATATTATGACATTGAGTACAATTTTTTCTTAAAAACAATAATGTAAAGCTGTGCGAATGTTGTAATATTTTAGGTTAAGTCTCCTATTGACTTGAAGGATTGAAGTTAGGCTAGATTGATTGTTCAATCAAAGGTATAAATTCACTGAATTCTAAGGATGAGTAGTTTTCTGCTGTCTTTGAGGGCTTAGTTGGGTCATTTTTTGAACAGACCATACTTCTTTTGAGGCAAGTAGTGTTTATCCCTTATTATGGTAATTGACGCAACCAATTGCTCCTTTTTGATCCTTATATCATAAATTGTTATTCTCATGAACTATATTACAAAATGGATATTATTTTAACTTCTATGTAATAATAATCAATTTTGTTCTTAAATAAACTATATGATATAGTTGTTTGTCAGCTTTATTCCTCTCTCTTGGGGTTGAATTGTTAAACGTAGTTATGCCCTTTTTTGTGGTAGATCAGTTTACCTATTCACATTCTGCACTTGTGAATTTATTTTTCTTGACTCTATTTTAATCTTTAAAAAACTAACAGAACACCCCTCGGCCAAAACCTATGATTAGAGCTGGACTTCTTATCGTCAATGATTTGTAACTATTTTATATCATCACATTGTATTTGTGTCAGATTATGTGTATATATAAAACATCTGCATTTTACAGGTATTTTCTTCATGCGGTGAGATTGTGGAAATAAGGTTGATAAAAGACCAGATAGGCAATGCCAAGGTAGTCAGTATGATCTGTTTATTTGTATTACCTCTTGTTTTCATGCTTTGCCATCCCTTAAAAAAAAAGCTAAAAAAGAGACATTAGAAAAAAACACGGTTTAGATGCTAATATTGCAGTGCTCATTTGTTATGACTACAGGGGTTCTGCTTTGTACGATTTGCAACAAAATATGCTGCTGACAAAGCTCTGAAGGAAAAATCTGGATATGTGGTAAAAGGCTAACAAAGATGCATTATTTCACTGTCTTGATAAACCATTACATTATTATTGGTTATTGCGATGGATTTTGCTTTTGTGATGCTGTTATTATTCATGAATGTACATAAGAACGACCACTTACTTGGATAAGCATTAGTGTATAATTCCTAGCCGAGACTTTTACTTGATGGCTTACATCTATTTGCAAAGGTTTGCCTTCTTTTAATTCAAGAATGTGTTCCTATAAAATAATGTTAAGAAAACAATCCGACTTACTCAGAATATTGATTTTTCCCCAGAATAAAAGATTGTCTGTATAACATTTTGACACTTTAACACTTTTAACTCAACACTTGAATATTTTTCTTCATGAAGAGCTTGAACTGCACATCTTGCTTTCTTGAAAGCTCTGAATTTGTATAAATGCTGGGATTTGTTCCACCAATGGGAGCAATTGATCAGTTCCTTGTTTTTTGCCCTTTTCCCGTTTTACTTTCTTTTTTCCATTCTTTGAATAGCTACAGATACCTAATTTGGTATTTGTTCAACTATGCACGTCTTTGTATTGTTGGGTTATCTCCTTACTTAATTATGAGCATTCACTAGATTATATGTTGTATTTTATAACATAGTCATGGACCATAGATCTACTAATAGTTCCTTGGATCCAGATAGTAAGCCCCTAAAATCAGGTGGGGCGCTATGTAGATCTTAACAGGCAACAAAAGGTTGGTTGGTGCATTAAACTACCTTTCTGTTAACACATCAAGCTCTTCTTTTGGTAACGATCGTAGTTTGTCAATTCATGCTCTGCTAGCACTGATCATCGGGATGCTGTTGTATGAACTATAAAATACTTAGTAAAGTACCAAGCTAAATGTTACTATACAAAGATGGAAGGAAATTCTCAAGATATAGGATACTTTGACTCAAATTGGGTTGATTCTCCTATTGATCAACTATTTATGTTTGGATACTATGTCTTTTGTGGTGGTGACTCTGTATTATGGAACAGTAGGAATCATAACATTTGTTTTATCACATGATTCCAATAAGATAGAATTGTAAACTTACTTAGTTAATGCAAGTGAAATCTAGAAAGGTGACGTATAAAAAGGAACGGCGAGAGTATTATTTATCTGACTCATATTGGCCATTTCAAATTTTTCTTTTGATGACCGAGAAATCCCTGAGGGCCAGTTGCTCACGGTTTGAAAGTTGGTGACTGGATAAGACTACTTCTCTCTTAGTATGAAATGTTTGGAAAATATTCATCTTGTTATGAGTCTGATTGTTTGTAATCTGTTGAACAGTGAGATTTTCTCCCTATTACATTTGATATATTTTTGTGGCTATTATTTCAGCTAGATGGGAAGAAAATTGGGATTCGCCCCTCAGTTGAGCAGGACACACTATTTCTTGGAAATCTTAACAAAGGTTTGTTTCATTTTTCTTGCAAATCTATTGTCCAAGATTTATTGCCGACTTAATTAGTGTCTTTCTGTGACATTGGAGAAGCTTTATAATGACAATATCAAGTTACATTCAAATGCCTTCATTCAAAATGTGAAGATGCCATTACATAGAAGATATTTTGATCTTACAAGGACTTGCATTATCTTACAATTTTATGGGCTGATATTTCATACATATCCGTTGTCTTGATTAAATTCTCTTTTTCTTTCTCTCATTCATTTTGGGCTTTGTGCACGTGGTAGTTTATAAGGATACATTTTCCTCTCCAGAGTAGTGAATTTGAACTTTAAAGGATCTTCCTTCTACTTATGTTTTCTTTGGCACTTGTGGAAGAGACAAGTTTTTTTATAACTGTACGCATTCCTTATTGCTTGTCTGGATTATTTAAAGGTTGGGGTGCTGAGGAATTTGAGAGTATTGTGCGCCAGGTACACCTTTTAACTGCTTACAGTGCACTTTTTTAAAAATCTCTTGAAATATTGATGAATATTCATCTCTCCCTCTCTCTAGGTTTTTCCAGATGTTACATCTGTTGATCTTGCAATTCTTGGAGATGTCCAACTTGGTCA</genome_strand>
        <mrna_strand>CAACTTCTGCATAGAAAAATAGTACGATGATATGCAGGGAAAACTGAACTCCGAAACGACAACTGATTTGAGGGCTTAGGGTTCCGACCGAATCACTCTCGGATTGAGAATTCATTGGAGACTTCATTTTTTCAG..............................................................................................................................................................................................................................................................................................................................................................................AACAGGAAATGAAAGGGACAGAGATTTTTGTTGGTGGTTTGGCCCGTACTACTACTGAAAGCAAAATTCACGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTCTTCATGCGGTGAGATTGTGGAAATAAGGTTGATAAAAGACCAGATAGGCAATGCCAAG.............................................................................................................................................GGGTTCTGCTTTGTACGATTTGCAACAAAATATGCTGCTGACAAAGCTCTGAAGGAAAAATCTGGATATGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGATGGGAAGAAAATTGGGATTCGCCCCTCAGTTGAGCAGGACACACTATTTCTTGGAAATCTTAACAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGGTGCTGAGGAATTTGAGAGTATTGTGCGCCAG..................................................................................GTTTTTCCAGATGTTACATCTGTTGATCTTGCAATTCTTGGAGATGTCCAACTTGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329117" ref_strand="+" ref_description="SGN-E329117 [cTOC-24-L10]">
      <seq>tgatctacccacctatcacaaggtgaaagattgtggattgccagtaataatactaggcgaagaacgtgcagaagggacgattcattgggatgaattgctcgaagctgcagatcgtgccagttccagaactgatcacataacaaaccaagaagatgaaattgtgcaacaaagtgatctatgtgcactgcccttttcatcaggcacgacaggactatccaagggagtgatgttaactcacagaaacctagtagcaaacctctgctctacactctttagtattagtccagaaatgataggtcaagttacaatactaggtctgataccattctttcacatttatggtataactggaatctgttgtgcaaccattaggaacaaagggaaagtggttgtcatgcgtaggtacgaactgagggcatttctaaatgcactcatcatacatgaagtctcatttgcacctatcgtgccacctatcatcttagcacttgttaagaatccgatcgttgatgaatttgatctcaaaaagcttaagcttagatccatcatgacagcagctgctccacttgcccctgagattcttaatgaatttgagaagaaatttccggatgttcaagtccaagaggcatatgggatgactgagcacagctgcattactctttcccacagcaatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="70816" stop="69119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70516" g_stop="70495" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70494" i_stop="70175" i_length="320">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70174" g_stop="69575" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="622" r_length="600" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69574" i_stop="69470" i_length="105">
            <donor d_prob="0.775" d_score="0.98"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69469" g_stop="69419" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="673" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E329117" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70516" e_stop="70495"/>
          <exon e_start="70174" e_stop="69575"/>
          <exon e_start="69469" e_stop="69419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTACCCACCTATCACAAGGTACGTAAGCTTCCAACTTATCAGTGGATTATGTAGAATTTTGCCTTACAGTGTCTGCACATTATCTATGATTTGTGTATGGGGTTACAGAGGTTTTAAGGCTTTACTTCTTGTTCAATCGATGTTTATTATATACACACGGGCACGTACTTGTTTAAGAAATTTGAGATGACACCTCTTGTAGAAGAGTGTCTTCAGATGGCTCATTAGGACCAAACTTCTTGTACTTGTTACTCGTATTGGTCCAACTAAAACTTGCATTCTACTATGATGGAAAACAAGATGCTTTCATTTTCCACCTAAAGTAATGGGAATTGCAGGTGAAAGATTGTGGATTGCCAGTAATAATACTAGGCGAAGAACGTGCAGAAGGGACGATTCATTGGGATGAATTGCTCGAAGCTGCAGATCGTGCCAGTTCCAGAACTGATCACATAACAAACCAAGAAGATGAAATTGTGCAACAAAGTGATCTATGTGCACTGCCCTTTTCATCAGGCACGACAGGACTATCCAAGGGAGTGATGTTAACTCACAGAAACCTAGTAGCAAACCTCTGCTCTACACTCTTTAGTATTAGTCCAGAAATGATAGGTCAAGTTACAATACTAGGTCTGATACCATTCTTTCACATTTATGGTATAACTGGAATCTGTTGTGCAACCATTAGGAACAAAGGGAAAGTGGTTGTCATGCGTAGGTACGAACTGAGGGCATTTCTAAATGCACTCATCATACATGAAGTCTCATTTGCACCTATCGTGCCACCTATCATCTTAGCACTTGTTAAGAATCCGATCGTTGATGAATTTGATCTCAAAAAGCTTAAGCTTAGATCCATCATGACAGCAGCTGCTCCACTTGCCCCTGAGATTCTTAATGAATTTGAGAAGAAATTTCCGGATGTTCAGGTCCAAGAGGTGAACATCCACTAGAAACTTATAATGGTCCTTCTCATGTCAACGAATTATTCAGTCCAAAATGTTGTTTTTGACAAGTTCTGTTCTGGCTTATTCAACTGCTAGGCATATGGGATGACTGAGCACAGCTGCATTACTCTTTCCCACAGCAATCAG</genome_strand>
        <mrna_strand>TGATCTACCCACCTATCACAAG................................................................................................................................................................................................................................................................................................................................GTGAAAGATTGTGGATTGCCAGTAATAATACTAGGCGAAGAACGTGCAGAAGGGACGATTCATTGGGATGAATTGCTCGAAGCTGCAGATCGTGCCAGTTCCAGAACTGATCACATAACAAACCAAGAAGATGAAATTGTGCAACAAAGTGATCTATGTGCACTGCCCTTTTCATCAGGCACGACAGGACTATCCAAGGGAGTGATGTTAACTCACAGAAACCTAGTAGCAAACCTCTGCTCTACACTCTTTAGTATTAGTCCAGAAATGATAGGTCAAGTTACAATACTAGGTCTGATACCATTCTTTCACATTTATGGTATAACTGGAATCTGTTGTGCAACCATTAGGAACAAAGGGAAAGTGGTTGTCATGCGTAGGTACGAACTGAGGGCATTTCTAAATGCACTCATCATACATGAAGTCTCATTTGCACCTATCGTGCCACCTATCATCTTAGCACTTGTTAAGAATCCGATCGTTGATGAATTTGATCTCAAAAAGCTTAAGCTTAGATCCATCATGACAGCAGCTGCTCCACTTGCCCCTGAGATTCTTAATGAATTTGAGAAGAAATTTCCGGATGTTCAAGTCCAAGAG.........................................................................................................GCATATGGGATGACTGAGCACAGCTGCATTACTCTTTCCCACAGCAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321757" ref_strand="+" ref_description="SGN-E321757 [cTOB-25-M2]">
      <seq>tcatgttgtagaatgctcacaaaagcaagaggaagatgaacacattttccgaagtagatatcctccagtccatgtaccagacaatgtgactctcccagaatttgtacttcataatgtagagttatacgctgacagactggcttttgtggatgctaccacgggcaaaggctacacatatggcgaagttgaaagagacataaggaggtttgccaaggccttgaggtcccttggcttaagaaaaggaagggttgtgttggtagtgcttccaaatgtaccggaatatgctattgttgctcttggaatcatggctgctggtggtgtcttttcaggtgcaaatccagcagctcattcatccgaaattatgaaacaagttgaatctgctgatggcaagcttattgtctctgatctacccacctatcacaaggtgaaagattgtggattgccagtaataatactaggcgaagaacgtgcagaagggacgattcattgngatgaattgctcgaagctgcagatcgtgccagttccagaactgatcacataacaaaccaagaagatgaaattgtggcaacaagtgatctatgtgcactgcccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="71218" stop="69704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70918" g_stop="70495" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70494" i_stop="70175" i_length="320">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70174" g_stop="70004" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="595" r_length="171" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E321757" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70918" e_stop="70495"/>
          <exon e_start="70174" e_stop="70004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGTTGTAGAATGCTCACAAAAGCAAGAGGAAGATGAACACATTTTCCGAAGTAGATATCCTCCAGTCCATGTACCAGACAATGTGACTCTCCCAGAATTTGTACTTCATAATGTAGAGTTATACGCTGACAGACTGGCTTTTGTGGATGCTACCACGGGCAAAGGCTACACATATGGCGAAGTTGAAAGAGACATAAGGAGGTTTGCCAAGGCCTTGAGGTCCCTTGGCTTAAGAAAAGGAAGGGTTGTGTTGGTAGTGCTTCCAAATGTACCGGAATATGCTATTGTTGCTCTTGGAATCATGGCTGCTGGTGGTGTCTTTTCAGGTGCAAATCCAGCAGCTCATTCATCCGAAATTATGAAACAAGTTGAATCTGCTGATGGCAAGCTTATTGTCTCTGATCTACCCACCTATCACAAGGTACGTAAGCTTCCAACTTATCAGTGGATTATGTAGAATTTTGCCTTACAGTGTCTGCACATTATCTATGATTTGTGTATGGGGTTACAGAGGTTTTAAGGCTTTACTTCTTGTTCAATCGATGTTTATTATATACACACGGGCACGTACTTGTTTAAGAAATTTGAGATGACACCTCTTGTAGAAGAGTGTCTTCAGATGGCTCATTAGGACCAAACTTCTTGTACTTGTTACTCGTATTGGTCCAACTAAAACTTGCATTCTACTATGATGGAAAACAAGATGCTTTCATTTTCCACCTAAAGTAATGGGAATTGCAGGTGAAAGATTGTGGATTGCCAGTAATAATACTAGGCGAAGAACGTGCAGAAGGGACGATTCATTGGGATGAATTGCTCGAAGCTGCAGATCGTGCCAGTTCCAGAACTGATCACATAACAAACCAAGAAGATGAAATTGTGCAACAAAGTGATCTATGTGCACTGCCCTTT</genome_strand>
        <mrna_strand>TCATGTTGTAGAATGCTCACAAAAGCAAGAGGAAGATGAACACATTTTCCGAAGTAGATATCCTCCAGTCCATGTACCAGACAATGTGACTCTCCCAGAATTTGTACTTCATAATGTAGAGTTATACGCTGACAGACTGGCTTTTGTGGATGCTACCACGGGCAAAGGCTACACATATGGCGAAGTTGAAAGAGACATAAGGAGGTTTGCCAAGGCCTTGAGGTCCCTTGGCTTAAGAAAAGGAAGGGTTGTGTTGGTAGTGCTTCCAAATGTACCGGAATATGCTATTGTTGCTCTTGGAATCATGGCTGCTGGTGGTGTCTTTTCAGGTGCAAATCCAGCAGCTCATTCATCCGAAATTATGAAACAAGTTGAATCTGCTGATGGCAAGCTTATTGTCTCTGATCTACCCACCTATCACAAG................................................................................................................................................................................................................................................................................................................................GTGAAAGATTGTGGATTGCCAGTAATAATACTAGGCGAAGAACGTGCAGAAGGGACGATTCATTGNGATGAATTGCTCGAAGCTGCAGATCGTGCCAGTTCCAGAACTGATCACATAACAAACCAAGAAGATGAAATTGTGGCAACAAGTGATCTATGTGCACTGCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215961" ref_strand="-" ref_description="SGN-E215961 [cLEL-13-D16](-)">
      <seq>ttttttttttttttttttttttttgaatgaggtccatagcattcttgatttcatataaaaagtacagggtaaaccatgttaatttgcatgtacgagtacaatttttttcaaagaatatgaaaacaaacgtcaacaaccaaattattaaatataggctggtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="35903" stop="71856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71055" g_stop="71073" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.579"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71074" i_stop="71415" i_length="342">
            <donor d_prob="0.527" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71416" g_stop="71559" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="163" r_length="144" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E215961" ref_strand="-">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>163</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215961" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71055" e_stop="71073"/>
          <exon e_start="71416" e_stop="71559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTATTTTGGTGATAAGTAAGAATTTGTTGAATCATTCCATTCTGCCTGACGTGTATCATGCACAAGTTATTTTTCCTATAACTCATCTTGCCTTAACTCATCTGCACTAATTCAATCCCATTGCCAGAATAACAATTTCTAAAAACTTATTCTCCGATTAGCTGTGTGCGTCTCACTTGCACGCATTCGGTTCGTATTTACACTGGTCCAGAATTTGCTTTGTGAACTTCAATTACTTAACGTACCAACAACCAGAACGTCGAACTGAAAACAGCTTTGGCAAGGCTACCATAGATAATTCAACCTCATTAAGTTTGAAATTTACTGCATTGAATACCAAGAAGAGATTCAAGACAATTTTTGAATGAGGTCCATAGCATTCTTGATTTCATATAAAAAGTACAGGGTAAACCATGTTAATTTGCATGTACGAGTACAATTTTTTTCAAAGAATATGAAAACAAACGTCAACAACCAAATTATTAAATATAGGCCGCTTAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTT......................................................................................................................................................................................................................................................................................................................................................TTTTTGAATGAGGTCCATAGCATTCTTGATTTCATATAAAAAGTACAGGGTAAACCATGTTAATTTGCATGTACGAGTACAATTTTTTTCAAAGAATATGAAAACAAACGTCAACAACCAAATTATTAAATATAGGCTGGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E696494" ref_strand="+" ref_description="SGN-E696494 [LH_Ea09E12](-)">
      <seq>gactgatccagatgccattccactgatggtaatgcaatccatgctgggcacttggaataaaaatgccggaggagggaaacacatgggctccgatctggcacaaagtgttggcattaatgaacttgctgagagcatgatgtcttttaacaccaactataaggatactggtctgttcggcgtgtatgctgttgcaaagcctgattgtttgagtgatttgtcctactgcattatgcgcgagataagcaaattgtgctaccgggtttcggatgctgatgtgactcgtgcttgcaaccagttgaagtcttctctcatgctacacattgatggaactagtcctgttgctgaagacattgggcgtcagctactcacatatggcagaaggattccagctacagagctgtttgcaagggttgatgctgtggatgctagcaccatcaaacgagttgcaaacagatttatctttgaccaggatgttgctatatccgcgctggggcctatccagacactacctgattataactggttcagatgcagaacctacatgctccgttattagacgattcttttttttttttggagttgtaatgcatcacaattacacacctcgttcgaccattccaaacttggacatataggtcttacttttccaattcttcctcttgcttaccttctggttttgtaacggttttgtagcttttccctatagaataagcggcctatatttaataatttggttgttgacaatggttttcatattctttgaaaaattgtactcgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="74820" stop="71200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74520" g_stop="74434" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74433" i_stop="74339" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74338" g_stop="74225" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="196" r_length="109" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74224" i_stop="73339" i_length="886">
            <donor d_prob="0.984" d_score="0.92"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73338" g_stop="73240" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="295" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73239" i_stop="73149" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73148" g_stop="73083" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="361" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73082" i_stop="72027" i_length="1056">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72026" g_stop="71919" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="469" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71918" i_stop="71802" i_length="117">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71801" g_stop="71475" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="790" r_length="321" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E696494" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74520" e_stop="74434"/>
          <exon e_start="74338" e_stop="74225"/>
          <exon e_start="73338" e_stop="73240"/>
          <exon e_start="73148" e_stop="73083"/>
          <exon e_start="72026" e_stop="71919"/>
          <exon e_start="71801" e_stop="71475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGGGTGAGTGTATCACTAGTTCTTTTACAATTTATGTCATCGCAAGCATGTCAATGGATCTGTCTCATGTTTTTATGGGACTTCCTAATCATTTGCAGCTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAGCCATGATGTCTTTTTAACACCAACTATAAGGATACTGGTTTGTTCCGGCGTGGTATGCTGTTGCAAAAGGTACAAATCTTTAACACCTAAGAGTTCCTTCTACCTGGAGAGAATGTAGTATGATGATGCATTACCTTATTTTCTTCGCATTTTCTTCCATCAAATAAAATTTGTTTTGTTTTTCTTTTTTAATGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGACAGAGATAGATAGATAGAGAGAGAGAGAGAGTCTGAGAGGGGTGGATCTGTTGGTTAGCTGAACAGCTGCTATAAATGCAAGCTCTTGCTCGGCTGATTGGAGTATTAGAGTTTGATGTAAAGGTTTTAATGCACCACATCTTCTATCGTGGGGTTTATGTAAAATGTACGTTTTATCCTTCAGCTTGTTTTTGTTTTCATTATGATTAAAATGTAGTCTAGATTCTTGAATATGCTTAAAAAGTATTCTAAGTGTTTATTGGTTGTATATTGAATGCGGAGTGAAGTAGTTCTTTTTCAATGTCATCTACTGCTCATGTTTTGGATAGATGTAGTTCATATATTATTAGACAAGGTGTTACTCATCTGCTTGGATTTTTTGAGATATTGTGGTTAGTGTAAACTGAGTAATTTTATTTATTTGTTCTTAAAAGAAGCAGATCTTTTCTCTAATGACCAAAAAAAGACGGTTAGGTGTTGGTATTGTGACCCTTTTGACTGGCATGTGGTTGTAAATAATTCTACTATATATTAGGCAAGGTAGTTCTTATCTTCTTGGATTTTTTGAGATAATTTGGTTAGTAAAGTGAGCAATTTTTTTATTTGTTCTTAAAAGAAACATTTTTTTTCTCTAAAGACAAAATTAATATGATTAGGTGTTGTATTACCATCCTTTTTATGGTTGTGAATAATCCTTGTTTTATCTTAAATGAATTCTTAATGTGCAGCCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAGGTTTGTGTTACTTAATGTTAAACAGTCTGGCTAGTTGTTATTACTCCTTGCTGTTTTTCTTTGTTTCTCTCTAACCAATATCGGTTTGCAGTTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAGGTACTATTCTGATATCCGATTCTGTGGTTGTACACATGTGTTTTGTCATGATTGTAATTAGTATTTTCTCATTAAGTTTATTCCTTGTAATTTCGGGGAGAAGTGGTGGGATTGGGTGGTATCATAGATAAGACGCTGCAAATGTAACTTAATTCCTTCTCTCACGGTATTAGTTTCCAGAAGAATGTTCTGGACACCTACATATATGTGCATAAAAGGGACACTGAACTGCTTCATGTACTTGAATCATTCCATGACCATAAACATTCTGAAGTAGAAGCTATAATAGTATCGAAGAGGATATTTTAGGAACTTTGTTACTCTTGGAGCAGTTTTAGTTAAACCGTGCCTAAGCCTACTAATGGCACTTCCCTACCCTAGATGATGACGATAGTTTGGTCCATTATTGCATATAGATTCTGAATTTCAAGATTTCACGATGCCTGAATAATCCTCTTCACCACTATAACAGCTTCTACTACCAATATTACTGCAACTAAATATAAACACGTGTTAGCCATATCAGCAGCAATTCACTGACACATTCCGTATTTGGTTCATTAAGTTCATTTTTGTTAGAGGTAGTGTAACTTGGTGGTGCAGTACAACATCAAGTAGCAGCCTAATTATGCATGCTTAATGTCTGAATAGATTAGAACAAAATGAATGCTGAAAGGTGTTGCTGCCAGCTGGTTGGTAAAAATAGCCCTTAACAGACCTTATAAGAAGAAAAATTGGAAAACAAAAAAGAACAGCTCTTAAACCGCAGTACCTTTGCTCATGTTGAGTTAAGAAAAAACTCTAATGTGAAGAGCCAAATGATCAAAGTTTTGCTGACAAGTTTTGAGTGTGTCATCAAGTATTTGTGTTTTTGCATGTCAAGCGTACTGCAACATCTGCTTGTAAGTGGAGAACATAGGTTGATAGCCCCCCCCTCCCCCCCTCCCCCCCTCTCCCTCCTTTCCAATATGTGGAAAAATTGTATTTTATGTAAGCTTGACTTCGTTAGGATGGGATCCAGTGATTATTTGTAAACTAAGATCATCCTGCTTGCAGCTACTCACATATGGCAGAAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAGGTAGGATTCAAAAATATTTGAGACATGGGAGTTCATTGCTATGAAACAATCTTGTTCACTCAACTTTCCTTTATCTTATTTTCTGAGTTTAAACCAAAATTTTCTTCCTTCTGGCAGGATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGACGCAGAACCTACATGCTCCGTTATTAGACGATTCTTTTTTTTCTTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGCTCGACCATTCCAAACTTGGACATATAGGTCTTACTTTTCCAATTCTTCCTCTTGCCTACTTTCTGGTTTTGTAACGGTTTTGTAGCTTTTCCCTATAAAATAAGCGGCCTATATTTAATAATTTGGTTGTTGACGTTTGTTTTCATATTCTTTGAAAAAAATTGTACTCGTACATGCAAATTAA</genome_strand>
        <mrna_strand>GACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGG...............................................................................................CTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAG-CATGATGTC-TTTTAACACCAACTATAAGGATACTGGTCTGTT-CGGCGT-GTATGCTGTTGC-AAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAG...........................................................................................TTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTCACATATGGCAGAAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAG.....................................................................................................................GATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGATGCAGAACCTACATGCTCCGTTATTAGACGATTC---TTTTT-TTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGTTCGACCATTCCAAACTTGGACATATAGGTCTTACTTTTCCAATTCTTCCTCTTGCTTACCTTCTGGTTTTGTAACGGTTTTGTAGCTTTTCCCTATAGAATAAGCGGCCTATATTTAATAATTTGGTTGTTGACAATGGTTTTCATATTCTTTG--AAAAATTGTACTCGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E552177" ref_strand="+" ref_description="SGN-E552177 [cTSB-3-B2]">
      <seq>taaggatactggtttgttcggcgtgtatgctgttgcaaagcctgattgtttgagtgatttgtcctactgcattatgcgcgagataagcaaattgtgctaccgggtttcggatgctgatgtgactcgtgcttgcaaccagttgaagtcttctctcatgctacacattgatggaactagtcctgttgctgaagacattgggcgtcagctactcacatatggcagaaggattccagctacagagctgtttgcaagggttgatgctgtggatgctagcaccatcaaacgagttgcaaacagatttatctttgaccaggatgttgctatatccgcgctggggcctatccagacactacctgattataactggttcagacgcagaacctacatgctccgttattagacgattcttttttttctttttttggagttgtaatgcatcacaattacacacctcgctcgaccattccaaacttggacatataggtcttacttttccaattcttcctcttgcctactttctggttttgtaacggttttgtagcttttccctataaaataagcggcctatatttaataatttggttgttgacgtttgttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="74567" stop="71212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74267" g_stop="74225" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74224" i_stop="73339" i_length="886">
            <donor d_prob="0.984" d_score="0.93"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73338" g_stop="73240" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="139" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73239" i_stop="73149" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73148" g_stop="73083" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="205" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73082" i_stop="72027" i_length="1056">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72026" g_stop="71919" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="313" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71918" i_stop="71802" i_length="117">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71801" g_stop="71515" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="600" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="601" polyA_stop="611"/>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E552177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74267" e_stop="74225"/>
          <exon e_start="73338" e_stop="73240"/>
          <exon e_start="73148" e_stop="73083"/>
          <exon e_start="72026" e_stop="71919"/>
          <exon e_start="71801" e_stop="71515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGATACTGGTTTGTTCCGGCGTGGTATGCTGTTGCAAAAGGTACAAATCTTTAACACCTAAGAGTTCCTTCTACCTGGAGAGAATGTAGTATGATGATGCATTACCTTATTTTCTTCGCATTTTCTTCCATCAAATAAAATTTGTTTTGTTTTTCTTTTTTAATGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGACAGAGATAGATAGATAGAGAGAGAGAGAGAGTCTGAGAGGGGTGGATCTGTTGGTTAGCTGAACAGCTGCTATAAATGCAAGCTCTTGCTCGGCTGATTGGAGTATTAGAGTTTGATGTAAAGGTTTTAATGCACCACATCTTCTATCGTGGGGTTTATGTAAAATGTACGTTTTATCCTTCAGCTTGTTTTTGTTTTCATTATGATTAAAATGTAGTCTAGATTCTTGAATATGCTTAAAAAGTATTCTAAGTGTTTATTGGTTGTATATTGAATGCGGAGTGAAGTAGTTCTTTTTCAATGTCATCTACTGCTCATGTTTTGGATAGATGTAGTTCATATATTATTAGACAAGGTGTTACTCATCTGCTTGGATTTTTTGAGATATTGTGGTTAGTGTAAACTGAGTAATTTTATTTATTTGTTCTTAAAAGAAGCAGATCTTTTCTCTAATGACCAAAAAAAGACGGTTAGGTGTTGGTATTGTGACCCTTTTGACTGGCATGTGGTTGTAAATAATTCTACTATATATTAGGCAAGGTAGTTCTTATCTTCTTGGATTTTTTGAGATAATTTGGTTAGTAAAGTGAGCAATTTTTTTATTTGTTCTTAAAAGAAACATTTTTTTTCTCTAAAGACAAAATTAATATGATTAGGTGTTGTATTACCATCCTTTTTATGGTTGTGAATAATCCTTGTTTTATCTTAAATGAATTCTTAATGTGCAGCCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAGGTTTGTGTTACTTAATGTTAAACAGTCTGGCTAGTTGTTATTACTCCTTGCTGTTTTTCTTTGTTTCTCTCTAACCAATATCGGTTTGCAGTTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAGGTACTATTCTGATATCCGATTCTGTGGTTGTACACATGTGTTTTGTCATGATTGTAATTAGTATTTTCTCATTAAGTTTATTCCTTGTAATTTCGGGGAGAAGTGGTGGGATTGGGTGGTATCATAGATAAGACGCTGCAAATGTAACTTAATTCCTTCTCTCACGGTATTAGTTTCCAGAAGAATGTTCTGGACACCTACATATATGTGCATAAAAGGGACACTGAACTGCTTCATGTACTTGAATCATTCCATGACCATAAACATTCTGAAGTAGAAGCTATAATAGTATCGAAGAGGATATTTTAGGAACTTTGTTACTCTTGGAGCAGTTTTAGTTAAACCGTGCCTAAGCCTACTAATGGCACTTCCCTACCCTAGATGATGACGATAGTTTGGTCCATTATTGCATATAGATTCTGAATTTCAAGATTTCACGATGCCTGAATAATCCTCTTCACCACTATAACAGCTTCTACTACCAATATTACTGCAACTAAATATAAACACGTGTTAGCCATATCAGCAGCAATTCACTGACACATTCCGTATTTGGTTCATTAAGTTCATTTTTGTTAGAGGTAGTGTAACTTGGTGGTGCAGTACAACATCAAGTAGCAGCCTAATTATGCATGCTTAATGTCTGAATAGATTAGAACAAAATGAATGCTGAAAGGTGTTGCTGCCAGCTGGTTGGTAAAAATAGCCCTTAACAGACCTTATAAGAAGAAAAATTGGAAAACAAAAAAGAACAGCTCTTAAACCGCAGTACCTTTGCTCATGTTGAGTTAAGAAAAAACTCTAATGTGAAGAGCCAAATGATCAAAGTTTTGCTGACAAGTTTTGAGTGTGTCATCAAGTATTTGTGTTTTTGCATGTCAAGCGTACTGCAACATCTGCTTGTAAGTGGAGAACATAGGTTGATAGCCCCCCCCTCCCCCCCTCCCCCCCTCTCCCTCCTTTCCAATATGTGGAAAAATTGTATTTTATGTAAGCTTGACTTCGTTAGGATGGGATCCAGTGATTATTTGTAAACTAAGATCATCCTGCTTGCAGCTACTCACATATGGCAGAAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAGGTAGGATTCAAAAATATTTGAGACATGGGAGTTCATTGCTATGAAACAATCTTGTTCACTCAACTTTCCTTTATCTTATTTTCTGAGTTTAAACCAAAATTTTCTTCCTTCTGGCAGGATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGACGCAGAACCTACATGCTCCGTTATTAGACGATTCTTTTTTTTCTTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGCTCGACCATTCCAAACTTGGACATATAGGTCTTACTTTTCCAATTCTTCCTCTTGCCTACTTTCTGGTTTTGTAACGGTTTTGTAGCTTTTCCCTATAAAATAAGCGGCCTATATTTAATAATTTGGTTGTTGACGTTTGTTTTC</genome_strand>
        <mrna_strand>TAAGGATACTGGTTTGTT-CGGCGT-GTATGCTGTTGC-AAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAG...........................................................................................TTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTCACATATGGCAGAAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAG.....................................................................................................................GATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGACGCAGAACCTACATGCTCCGTTATTAGACGATTCTTTTTTTTCTTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGCTCGACCATTCCAAACTTGGACATATAGGTCTTACTTTTCCAATTCTTCCTCTTGCCTACTTTCTGGTTTTGTAACGGTTTTGTAGCTTTTCCCTATAAAATAAGCGGCCTATATTTAATAATTTGGTTGTTGACGTTTGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E552182" ref_strand="+" ref_description="SGN-E552182 [cTSB-3-B3]">
      <seq>taaggatactggtttgttcggcgtgtatgctgttgcaaagcctgattgtttgagtgatttgtcctactgcattatgcgcgagataagcaaattgtgctaccgggtttcggatgctgatgtgactcgtgcttgcaaccagttgaagtcttctctcatgctacacattgatggaactagtcctgttgctgaagacattgggcgtcagctactcacatatggcagaaggattccagctacagagctgtttgcaagggttgatgctgtggatgctagcaccatcaaacgagttgcaaacagatttatctttgaccaggatgttgctatatccgcgctggggcctatccagacactacctgattataactggttcagacgcagaacctacatgctccgttattagacgattcttttttttctttttttggagttgtaatgcatcacaattacacacctcgctcgaccattccaaacttggacatataggtcttacttttccaattcttcctcttgcctactttctggttttgtaacggttttgtagcttttccctataaaataagcggcctatatttaataatttggttgttgacgtttgttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="74567" stop="71212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74267" g_stop="74225" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74224" i_stop="73339" i_length="886">
            <donor d_prob="0.984" d_score="0.93"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73338" g_stop="73240" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="139" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73239" i_stop="73149" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73148" g_stop="73083" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="205" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73082" i_stop="72027" i_length="1056">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72026" g_stop="71919" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="313" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71918" i_stop="71802" i_length="117">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71801" g_stop="71515" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="600" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="601" polyA_stop="611"/>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E552182" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74267" e_stop="74225"/>
          <exon e_start="73338" e_stop="73240"/>
          <exon e_start="73148" e_stop="73083"/>
          <exon e_start="72026" e_stop="71919"/>
          <exon e_start="71801" e_stop="71515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGATACTGGTTTGTTCCGGCGTGGTATGCTGTTGCAAAAGGTACAAATCTTTAACACCTAAGAGTTCCTTCTACCTGGAGAGAATGTAGTATGATGATGCATTACCTTATTTTCTTCGCATTTTCTTCCATCAAATAAAATTTGTTTTGTTTTTCTTTTTTAATGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGACAGAGATAGATAGATAGAGAGAGAGAGAGAGTCTGAGAGGGGTGGATCTGTTGGTTAGCTGAACAGCTGCTATAAATGCAAGCTCTTGCTCGGCTGATTGGAGTATTAGAGTTTGATGTAAAGGTTTTAATGCACCACATCTTCTATCGTGGGGTTTATGTAAAATGTACGTTTTATCCTTCAGCTTGTTTTTGTTTTCATTATGATTAAAATGTAGTCTAGATTCTTGAATATGCTTAAAAAGTATTCTAAGTGTTTATTGGTTGTATATTGAATGCGGAGTGAAGTAGTTCTTTTTCAATGTCATCTACTGCTCATGTTTTGGATAGATGTAGTTCATATATTATTAGACAAGGTGTTACTCATCTGCTTGGATTTTTTGAGATATTGTGGTTAGTGTAAACTGAGTAATTTTATTTATTTGTTCTTAAAAGAAGCAGATCTTTTCTCTAATGACCAAAAAAAGACGGTTAGGTGTTGGTATTGTGACCCTTTTGACTGGCATGTGGTTGTAAATAATTCTACTATATATTAGGCAAGGTAGTTCTTATCTTCTTGGATTTTTTGAGATAATTTGGTTAGTAAAGTGAGCAATTTTTTTATTTGTTCTTAAAAGAAACATTTTTTTTCTCTAAAGACAAAATTAATATGATTAGGTGTTGTATTACCATCCTTTTTATGGTTGTGAATAATCCTTGTTTTATCTTAAATGAATTCTTAATGTGCAGCCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAGGTTTGTGTTACTTAATGTTAAACAGTCTGGCTAGTTGTTATTACTCCTTGCTGTTTTTCTTTGTTTCTCTCTAACCAATATCGGTTTGCAGTTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAGGTACTATTCTGATATCCGATTCTGTGGTTGTACACATGTGTTTTGTCATGATTGTAATTAGTATTTTCTCATTAAGTTTATTCCTTGTAATTTCGGGGAGAAGTGGTGGGATTGGGTGGTATCATAGATAAGACGCTGCAAATGTAACTTAATTCCTTCTCTCACGGTATTAGTTTCCAGAAGAATGTTCTGGACACCTACATATATGTGCATAAAAGGGACACTGAACTGCTTCATGTACTTGAATCATTCCATGACCATAAACATTCTGAAGTAGAAGCTATAATAGTATCGAAGAGGATATTTTAGGAACTTTGTTACTCTTGGAGCAGTTTTAGTTAAACCGTGCCTAAGCCTACTAATGGCACTTCCCTACCCTAGATGATGACGATAGTTTGGTCCATTATTGCATATAGATTCTGAATTTCAAGATTTCACGATGCCTGAATAATCCTCTTCACCACTATAACAGCTTCTACTACCAATATTACTGCAACTAAATATAAACACGTGTTAGCCATATCAGCAGCAATTCACTGACACATTCCGTATTTGGTTCATTAAGTTCATTTTTGTTAGAGGTAGTGTAACTTGGTGGTGCAGTACAACATCAAGTAGCAGCCTAATTATGCATGCTTAATGTCTGAATAGATTAGAACAAAATGAATGCTGAAAGGTGTTGCTGCCAGCTGGTTGGTAAAAATAGCCCTTAACAGACCTTATAAGAAGAAAAATTGGAAAACAAAAAAGAACAGCTCTTAAACCGCAGTACCTTTGCTCATGTTGAGTTAAGAAAAAACTCTAATGTGAAGAGCCAAATGATCAAAGTTTTGCTGACAAGTTTTGAGTGTGTCATCAAGTATTTGTGTTTTTGCATGTCAAGCGTACTGCAACATCTGCTTGTAAGTGGAGAACATAGGTTGATAGCCCCCCCCTCCCCCCCTCCCCCCCTCTCCCTCCTTTCCAATATGTGGAAAAATTGTATTTTATGTAAGCTTGACTTCGTTAGGATGGGATCCAGTGATTATTTGTAAACTAAGATCATCCTGCTTGCAGCTACTCACATATGGCAGAAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAGGTAGGATTCAAAAATATTTGAGACATGGGAGTTCATTGCTATGAAACAATCTTGTTCACTCAACTTTCCTTTATCTTATTTTCTGAGTTTAAACCAAAATTTTCTTCCTTCTGGCAGGATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGACGCAGAACCTACATGCTCCGTTATTAGACGATTCTTTTTTTTCTTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGCTCGACCATTCCAAACTTGGACATATAGGTCTTACTTTTCCAATTCTTCCTCTTGCCTACTTTCTGGTTTTGTAACGGTTTTGTAGCTTTTCCCTATAAAATAAGCGGCCTATATTTAATAATTTGGTTGTTGACGTTTGTTTTC</genome_strand>
        <mrna_strand>TAAGGATACTGGTTTGTT-CGGCGT-GTATGCTGTTGC-AAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAG...........................................................................................TTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTCACATATGGCAGAAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAG.....................................................................................................................GATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGACGCAGAACCTACATGCTCCGTTATTAGACGATTCTTTTTTTTCTTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGCTCGACCATTCCAAACTTGGACATATAGGTCTTACTTTTCCAATTCTTCCTCTTGCCTACTTTCTGGTTTTGTAACGGTTTTGTAGCTTTTCCCTATAAAATAAGCGGCCTATATTTAATAATTTGGTTGTTGACGTTTGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553430" ref_strand="-" ref_description="SGN-E553430 [cTSC-1-B2]">
      <seq>cattaatgaacttgctgagagcatgatgtcttttaacaccaactataaggatactggtttgttcggcgtgtatgctgttgcaaagcctgattgtttgagtgatttgtcctactgcattatgcgcgagataagcaaattgtgctaccgggtttcggatgctgatgtgactcgtgcttgcaaccagttgaagtcttctctcatgctacacattgatggaactagtcctgttgctgaagacattgggcgtcagctactcacatatggcagaaggattccagctacagagctgtttgcaagggttgatgctgtggatgctagcaccatcaaacgagttgcaaacagatttatctttgaccaggatgttgctatatccgcgctggggcctatccagacactacctgattataactggttcagacgcagaacctacatgctccgttattagacgattcttttttttctttttttggagttgtaatgcatcacaattacacacctcgctcgaccattccaaacttggacatataggtcttacttttccaattcttcctcttgcctactttctggttttgtaacggttttgtagcttttccctataaaataagcggcctatatttaataatttggtgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="74614" stop="71227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74314" g_stop="74225" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74224" i_stop="73339" i_length="886">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73338" g_stop="73240" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="184" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73239" i_stop="73149" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73148" g_stop="73083" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="250" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73082" i_stop="72027" i_length="1056">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72026" g_stop="71919" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="358" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71918" i_stop="71802" i_length="117">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71801" g_stop="71527" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="632" r_length="274" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E553430" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553430" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74314" e_stop="74225"/>
          <exon e_start="73338" e_stop="73240"/>
          <exon e_start="73148" e_stop="73083"/>
          <exon e_start="72026" e_stop="71919"/>
          <exon e_start="71801" e_stop="71527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTAATGAACTTGCTGAGAGCCATGATGTCTTTTTAACACCAACTATAAGGATACTGGTTTGTTCCGGCGTGGTATGCTGTTGCAAAAGGTACAAATCTTTAACACCTAAGAGTTCCTTCTACCTGGAGAGAATGTAGTATGATGATGCATTACCTTATTTTCTTCGCATTTTCTTCCATCAAATAAAATTTGTTTTGTTTTTCTTTTTTAATGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGACAGAGATAGATAGATAGAGAGAGAGAGAGAGTCTGAGAGGGGTGGATCTGTTGGTTAGCTGAACAGCTGCTATAAATGCAAGCTCTTGCTCGGCTGATTGGAGTATTAGAGTTTGATGTAAAGGTTTTAATGCACCACATCTTCTATCGTGGGGTTTATGTAAAATGTACGTTTTATCCTTCAGCTTGTTTTTGTTTTCATTATGATTAAAATGTAGTCTAGATTCTTGAATATGCTTAAAAAGTATTCTAAGTGTTTATTGGTTGTATATTGAATGCGGAGTGAAGTAGTTCTTTTTCAATGTCATCTACTGCTCATGTTTTGGATAGATGTAGTTCATATATTATTAGACAAGGTGTTACTCATCTGCTTGGATTTTTTGAGATATTGTGGTTAGTGTAAACTGAGTAATTTTATTTATTTGTTCTTAAAAGAAGCAGATCTTTTCTCTAATGACCAAAAAAAGACGGTTAGGTGTTGGTATTGTGACCCTTTTGACTGGCATGTGGTTGTAAATAATTCTACTATATATTAGGCAAGGTAGTTCTTATCTTCTTGGATTTTTTGAGATAATTTGGTTAGTAAAGTGAGCAATTTTTTTATTTGTTCTTAAAAGAAACATTTTTTTTCTCTAAAGACAAAATTAATATGATTAGGTGTTGTATTACCATCCTTTTTATGGTTGTGAATAATCCTTGTTTTATCTTAAATGAATTCTTAATGTGCAGCCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAGGTTTGTGTTACTTAATGTTAAACAGTCTGGCTAGTTGTTATTACTCCTTGCTGTTTTTCTTTGTTTCTCTCTAACCAATATCGGTTTGCAGTTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAGGTACTATTCTGATATCCGATTCTGTGGTTGTACACATGTGTTTTGTCATGATTGTAATTAGTATTTTCTCATTAAGTTTATTCCTTGTAATTTCGGGGAGAAGTGGTGGGATTGGGTGGTATCATAGATAAGACGCTGCAAATGTAACTTAATTCCTTCTCTCACGGTATTAGTTTCCAGAAGAATGTTCTGGACACCTACATATATGTGCATAAAAGGGACACTGAACTGCTTCATGTACTTGAATCATTCCATGACCATAAACATTCTGAAGTAGAAGCTATAATAGTATCGAAGAGGATATTTTAGGAACTTTGTTACTCTTGGAGCAGTTTTAGTTAAACCGTGCCTAAGCCTACTAATGGCACTTCCCTACCCTAGATGATGACGATAGTTTGGTCCATTATTGCATATAGATTCTGAATTTCAAGATTTCACGATGCCTGAATAATCCTCTTCACCACTATAACAGCTTCTACTACCAATATTACTGCAACTAAATATAAACACGTGTTAGCCATATCAGCAGCAATTCACTGACACATTCCGTATTTGGTTCATTAAGTTCATTTTTGTTAGAGGTAGTGTAACTTGGTGGTGCAGTACAACATCAAGTAGCAGCCTAATTATGCATGCTTAATGTCTGAATAGATTAGAACAAAATGAATGCTGAAAGGTGTTGCTGCCAGCTGGTTGGTAAAAATAGCCCTTAACAGACCTTATAAGAAGAAAAATTGGAAAACAAAAAAGAACAGCTCTTAAACCGCAGTACCTTTGCTCATGTTGAGTTAAGAAAAAACTCTAATGTGAAGAGCCAAATGATCAAAGTTTTGCTGACAAGTTTTGAGTGTGTCATCAAGTATTTGTGTTTTTGCATGTCAAGCGTACTGCAACATCTGCTTGTAAGTGGAGAACATAGGTTGATAGCCCCCCCCTCCCCCCCTCCCCCCCTCTCCCTCCTTTCCAATATGTGGAAAAATTGTATTTTATGTAAGCTTGACTTCGTTAGGATGGGATCCAGTGATTATTTGTAAACTAAGATCATCCTGCTTGCAGCTACTCACATATGGCAGAAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAGGTAGGATTCAAAAATATTTGAGACATGGGAGTTCATTGCTATGAAACAATCTTGTTCACTCAACTTTCCTTTATCTTATTTTCTGAGTTTAAACCAAAATTTTCTTCCTTCTGGCAGGATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGACGCAGAACCTACATGCTCCGTTATTAGACGATTCTTTTTTTTCTTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGCTCGACCATTCCAAACTTGGACATATAGGTCTTACTTTTCCAATTCTTCCTCTTGCCTACTTTCTGGTTTTGTAACGGTTTTGTAGCTTTTCCCTATAAAATAAGCGGCCTATATTTAATAATTTGGTTGTTG</genome_strand>
        <mrna_strand>CATTAATGAACTTGCTGAGAG-CATGATGTC-TTTTAACACCAACTATAAGGATACTGGTTTGTT-CGGCGT-GTATGCTGTTGCAA-AG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAG...........................................................................................TTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTCACATATGGCAGAAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAG.....................................................................................................................GATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGACGCAGAACCTACATGCTCCGTTATTAGACGATTCTTTTTTTTCTTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGCTCGACCATTCCAAACTTGGACATATAGGTCTTACTTTTCCAATTCTTCCTCTTGCCTACTTTCTGGTTTTGTAACGGTTTTGTAGCTTTTCCCTATAAAATAAGCGGCCTATATTTAATAATTTGG-TGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694289" ref_strand="+" ref_description="SGN-E694289 [LH_Ea03I15](-)">
      <seq>ggggcaccgtggactgatccagatgccattccactgatggtaatgcaatccatgctgggcacttggaataaaaatgccggaggagggaaacacatgggctccgatctggcacaaagtgttggcattaatgaacttgctgagagcatgatgtcttttaacaccaactataaggatactggtctgttcggcgtgtatgctgttgcaaagcctgattgtttgagtgatttgtcctactgcattatgcgcgagataagcaaattgtgctaccgggtttcggatgctgatgtgactcgtgcttgcaaccagttgaagtcttctctcatgctacacattgatggaactagtcctgttgctgaagacattgggcgtcagctactcacatatggcagaaggattccagctacagagctgtttgcaagggttgatgctgtggatgctagcaccatcaaacgagttgcaaacagatttatctttgaccaggatgttgctatatccgcgctggggcctatccagacactacctgattataactggttcagatgcagaacctacatgctccgttattagacgattctttttttttttttggagttgtaatgcatcacaattacacacctcgttcgaccattccaaacttggacatataggtcttacttttccaattcttcctcttgcttaccttctggttttgtaacggttttgtagcattgccctataaaataagcggcctatatttataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="74831" stop="71238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74531" g_stop="74434" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74433" i_stop="74339" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74338" g_stop="74225" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="207" r_length="109" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74224" i_stop="73339" i_length="886">
            <donor d_prob="0.984" d_score="0.92"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73338" g_stop="73240" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="306" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73239" i_stop="73149" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73148" g_stop="73083" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="372" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73082" i_stop="72027" i_length="1056">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72026" g_stop="71919" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="480" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71918" i_stop="71802" i_length="117">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71801" g_stop="71542" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="737" r_length="257" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="739" polyA_stop="757"/>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E694289" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74531" e_stop="74434"/>
          <exon e_start="74338" e_stop="74225"/>
          <exon e_start="73338" e_stop="73240"/>
          <exon e_start="73148" e_stop="73083"/>
          <exon e_start="72026" e_stop="71919"/>
          <exon e_start="71801" e_stop="71542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGGGTGAGTGTATCACTAGTTCTTTTACAATTTATGTCATCGCAAGCATGTCAATGGATCTGTCTCATGTTTTTATGGGACTTCCTAATCATTTGCAGCTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAGCCATGATGTCTTTTTAACACCAACTATAAGGATACTGGTTTGTTCCGGCGTGGTATGCTGTTGCAAAAGGTACAAATCTTTAACACCTAAGAGTTCCTTCTACCTGGAGAGAATGTAGTATGATGATGCATTACCTTATTTTCTTCGCATTTTCTTCCATCAAATAAAATTTGTTTTGTTTTTCTTTTTTAATGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGACAGAGATAGATAGATAGAGAGAGAGAGAGAGTCTGAGAGGGGTGGATCTGTTGGTTAGCTGAACAGCTGCTATAAATGCAAGCTCTTGCTCGGCTGATTGGAGTATTAGAGTTTGATGTAAAGGTTTTAATGCACCACATCTTCTATCGTGGGGTTTATGTAAAATGTACGTTTTATCCTTCAGCTTGTTTTTGTTTTCATTATGATTAAAATGTAGTCTAGATTCTTGAATATGCTTAAAAAGTATTCTAAGTGTTTATTGGTTGTATATTGAATGCGGAGTGAAGTAGTTCTTTTTCAATGTCATCTACTGCTCATGTTTTGGATAGATGTAGTTCATATATTATTAGACAAGGTGTTACTCATCTGCTTGGATTTTTTGAGATATTGTGGTTAGTGTAAACTGAGTAATTTTATTTATTTGTTCTTAAAAGAAGCAGATCTTTTCTCTAATGACCAAAAAAAGACGGTTAGGTGTTGGTATTGTGACCCTTTTGACTGGCATGTGGTTGTAAATAATTCTACTATATATTAGGCAAGGTAGTTCTTATCTTCTTGGATTTTTTGAGATAATTTGGTTAGTAAAGTGAGCAATTTTTTTATTTGTTCTTAAAAGAAACATTTTTTTTCTCTAAAGACAAAATTAATATGATTAGGTGTTGTATTACCATCCTTTTTATGGTTGTGAATAATCCTTGTTTTATCTTAAATGAATTCTTAATGTGCAGCCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAGGTTTGTGTTACTTAATGTTAAACAGTCTGGCTAGTTGTTATTACTCCTTGCTGTTTTTCTTTGTTTCTCTCTAACCAATATCGGTTTGCAGTTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAGGTACTATTCTGATATCCGATTCTGTGGTTGTACACATGTGTTTTGTCATGATTGTAATTAGTATTTTCTCATTAAGTTTATTCCTTGTAATTTCGGGGAGAAGTGGTGGGATTGGGTGGTATCATAGATAAGACGCTGCAAATGTAACTTAATTCCTTCTCTCACGGTATTAGTTTCCAGAAGAATGTTCTGGACACCTACATATATGTGCATAAAAGGGACACTGAACTGCTTCATGTACTTGAATCATTCCATGACCATAAACATTCTGAAGTAGAAGCTATAATAGTATCGAAGAGGATATTTTAGGAACTTTGTTACTCTTGGAGCAGTTTTAGTTAAACCGTGCCTAAGCCTACTAATGGCACTTCCCTACCCTAGATGATGACGATAGTTTGGTCCATTATTGCATATAGATTCTGAATTTCAAGATTTCACGATGCCTGAATAATCCTCTTCACCACTATAACAGCTTCTACTACCAATATTACTGCAACTAAATATAAACACGTGTTAGCCATATCAGCAGCAATTCACTGACACATTCCGTATTTGGTTCATTAAGTTCATTTTTGTTAGAGGTAGTGTAACTTGGTGGTGCAGTACAACATCAAGTAGCAGCCTAATTATGCATGCTTAATGTCTGAATAGATTAGAACAAAATGAATGCTGAAAGGTGTTGCTGCCAGCTGGTTGGTAAAAATAGCCCTTAACAGACCTTATAAGAAGAAAAATTGGAAAACAAAAAAGAACAGCTCTTAAACCGCAGTACCTTTGCTCATGTTGAGTTAAGAAAAAACTCTAATGTGAAGAGCCAAATGATCAAAGTTTTGCTGACAAGTTTTGAGTGTGTCATCAAGTATTTGTGTTTTTGCATGTCAAGCGTACTGCAACATCTGCTTGTAAGTGGAGAACATAGGTTGATAGCCCCCCCCTCCCCCCCTCCCCCCCTCTCCCTCCTTTCCAATATGTGGAAAAATTGTATTTTATGTAAGCTTGACTTCGTTAGGATGGGATCCAGTGATTATTTGTAAACTAAGATCATCCTGCTTGCAGCTACTCACATATGGCAGAAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAGGTAGGATTCAAAAATATTTGAGACATGGGAGTTCATTGCTATGAAACAATCTTGTTCACTCAACTTTCCTTTATCTTATTTTCTGAGTTTAAACCAAAATTTTCTTCCTTCTGGCAGGATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGACGCAGAACCTACATGCTCCGTTATTAGACGATTCTTTTTTTTCTTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGCTCGACCATTCCAAACTTGGACATATAGGTCTTACTTTTCCAATTCTTCCTCTTGCCTACTTTCTGGTTTTGTAACGGTTTTGTAGCTTTTCCCTATAAAATAAGCGGCCTATATTTA</genome_strand>
        <mrna_strand>GGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGG...............................................................................................CTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAG-CATGATGTC-TTTTAACACCAACTATAAGGATACTGGTCTGTT-CGGCGT-GTATGCTGTTGC-AAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAG...........................................................................................TTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTCACATATGGCAGAAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAG.....................................................................................................................GATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGATGCAGAACCTACATGCTCCGTTATTAGACGATTC--TTTTTT-TTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGTTCGACCATTCCAAACTTGGACATATAGGTCTTACTTTTCCAATTCTTCCTCTTGCTTACCTTCTGGTTTTGTAACGGTTTTGTAGCATTGCCCTATAAAATAAGCGGCCTATATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690449" ref_strand="+" ref_description="SGN-E690449 [LH_Ea03I15]">
      <seq>tgggcaccgtggactgatccagatgccattccactgatcgtaatgcaatccatgctgggcacttggaataaaaatgccggaggagggaaacacatgggctccgatctggcacaaagtgttggcattaatgaacttgctgagagcatgatgtcttttaacaccaactataaggatactggtctgttcggcgtgtatgctgttgcaaagcctgattgtttgagtgatttgtcctactgcattatgcgcgagataagcaaattgtgctaccgggtttcggatgctgatgtgactcgtgcttgcaaccagttgaagtcttctctcatgctacacattgatggaactagtcctgttgctgaagacattgggcgtcagctactcacatatggcagaaggattccagctacagagctgtttgcaagggttgatgctgtggatgctagcaccatcaaacgagttgcaaacagatttatctttgaccaggatgttgctatatccgcgctggggcctatccagacactacctgattataactggttcagatgcagaacctacatgctccgttattagacgattctttttttttttttggagttgtaatgcatcacaattacacacctcgttcgaccattccaaacttggacatataggtcttacttttccaattcttccctcttgcttaccttctggatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="74830" stop="71289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74531" g_stop="74434" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74433" i_stop="74339" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74338" g_stop="74225" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="207" r_length="109" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74224" i_stop="73339" i_length="886">
            <donor d_prob="0.984" d_score="0.92"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73338" g_stop="73240" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="306" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73239" i_stop="73149" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73148" g_stop="73083" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="372" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73082" i_stop="72027" i_length="1056">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72026" g_stop="71919" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="480" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71918" i_stop="71802" i_length="117">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71801" g_stop="71588" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="692" r_length="212" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E690449" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74531" e_stop="74434"/>
          <exon e_start="74338" e_stop="74225"/>
          <exon e_start="73338" e_stop="73240"/>
          <exon e_start="73148" e_stop="73083"/>
          <exon e_start="72026" e_stop="71919"/>
          <exon e_start="71801" e_stop="71588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGGGTGAGTGTATCACTAGTTCTTTTACAATTTATGTCATCGCAAGCATGTCAATGGATCTGTCTCATGTTTTTATGGGACTTCCTAATCATTTGCAGCTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAGCCATGATGTCTTTTTAACACCAACTATAAGGATACTGGTTTGTTCCGGCGTGGTATGCTGTTGCAAAAGGTACAAATCTTTAACACCTAAGAGTTCCTTCTACCTGGAGAGAATGTAGTATGATGATGCATTACCTTATTTTCTTCGCATTTTCTTCCATCAAATAAAATTTGTTTTGTTTTTCTTTTTTAATGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGACAGAGATAGATAGATAGAGAGAGAGAGAGAGTCTGAGAGGGGTGGATCTGTTGGTTAGCTGAACAGCTGCTATAAATGCAAGCTCTTGCTCGGCTGATTGGAGTATTAGAGTTTGATGTAAAGGTTTTAATGCACCACATCTTCTATCGTGGGGTTTATGTAAAATGTACGTTTTATCCTTCAGCTTGTTTTTGTTTTCATTATGATTAAAATGTAGTCTAGATTCTTGAATATGCTTAAAAAGTATTCTAAGTGTTTATTGGTTGTATATTGAATGCGGAGTGAAGTAGTTCTTTTTCAATGTCATCTACTGCTCATGTTTTGGATAGATGTAGTTCATATATTATTAGACAAGGTGTTACTCATCTGCTTGGATTTTTTGAGATATTGTGGTTAGTGTAAACTGAGTAATTTTATTTATTTGTTCTTAAAAGAAGCAGATCTTTTCTCTAATGACCAAAAAAAGACGGTTAGGTGTTGGTATTGTGACCCTTTTGACTGGCATGTGGTTGTAAATAATTCTACTATATATTAGGCAAGGTAGTTCTTATCTTCTTGGATTTTTTGAGATAATTTGGTTAGTAAAGTGAGCAATTTTTTTATTTGTTCTTAAAAGAAACATTTTTTTTCTCTAAAGACAAAATTAATATGATTAGGTGTTGTATTACCATCCTTTTTATGGTTGTGAATAATCCTTGTTTTATCTTAAATGAATTCTTAATGTGCAGCCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAGGTTTGTGTTACTTAATGTTAAACAGTCTGGCTAGTTGTTATTACTCCTTGCTGTTTTTCTTTGTTTCTCTCTAACCAATATCGGTTTGCAGTTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAGGTACTATTCTGATATCCGATTCTGTGGTTGTACACATGTGTTTTGTCATGATTGTAATTAGTATTTTCTCATTAAGTTTATTCCTTGTAATTTCGGGGAGAAGTGGTGGGATTGGGTGGTATCATAGATAAGACGCTGCAAATGTAACTTAATTCCTTCTCTCACGGTATTAGTTTCCAGAAGAATGTTCTGGACACCTACATATATGTGCATAAAAGGGACACTGAACTGCTTCATGTACTTGAATCATTCCATGACCATAAACATTCTGAAGTAGAAGCTATAATAGTATCGAAGAGGATATTTTAGGAACTTTGTTACTCTTGGAGCAGTTTTAGTTAAACCGTGCCTAAGCCTACTAATGGCACTTCCCTACCCTAGATGATGACGATAGTTTGGTCCATTATTGCATATAGATTCTGAATTTCAAGATTTCACGATGCCTGAATAATCCTCTTCACCACTATAACAGCTTCTACTACCAATATTACTGCAACTAAATATAAACACGTGTTAGCCATATCAGCAGCAATTCACTGACACATTCCGTATTTGGTTCATTAAGTTCATTTTTGTTAGAGGTAGTGTAACTTGGTGGTGCAGTACAACATCAAGTAGCAGCCTAATTATGCATGCTTAATGTCTGAATAGATTAGAACAAAATGAATGCTGAAAGGTGTTGCTGCCAGCTGGTTGGTAAAAATAGCCCTTAACAGACCTTATAAGAAGAAAAATTGGAAAACAAAAAAGAACAGCTCTTAAACCGCAGTACCTTTGCTCATGTTGAGTTAAGAAAAAACTCTAATGTGAAGAGCCAAATGATCAAAGTTTTGCTGACAAGTTTTGAGTGTGTCATCAAGTATTTGTGTTTTTGCATGTCAAGCGTACTGCAACATCTGCTTGTAAGTGGAGAACATAGGTTGATAGCCCCCCCCTCCCCCCCTCCCCCCCTCTCCCTCCTTTCCAATATGTGGAAAAATTGTATTTTATGTAAGCTTGACTTCGTTAGGATGGGATCCAGTGATTATTTGTAAACTAAGATCATCCTGCTTGCAGCTACTCACATATGGCAGAAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAGGTAGGATTCAAAAATATTTGAGACATGGGAGTTCATTGCTATGAAACAATCTTGTTCACTCAACTTTCCTTTATCTTATTTTCTGAGTTTAAACCAAAATTTTCTTCCTTCTGGCAGGATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGACGCAGAACCTACATGCTCCGTTATTAGACGATTCTTTTTTTTCTTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGCTCGACCATTCCAAACTTGGACATATAGGTCTTACTTTTCCAATTCTT-CCTCTTGCCTACTTTCTGGTTTTG</genome_strand>
        <mrna_strand>TGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATCGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGG...............................................................................................CTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAG-CATGATGTC-TTTTAACACCAACTATAAGGATACTGGTCTGTT-CGGCGT-GTATGCTGTTGC-AAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAG...........................................................................................TTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTCACATATGGCAGAAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAG.....................................................................................................................GATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGATGCAGAACCTACATGCTCCGTTATTAGACGATTC--TTTTTT-TTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGTTCGACCATTCCAAACTTGGACATATAGGTCTTACTTTTCCAATTCTTCCCTCTTGCTTACCTTCTGGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372575" ref_strand="+" ref_description="SGN-E372575 [TUS-31-G7](-)">
      <seq>aaggattccagctacagagctgtttgcaagggttgatgctgtggatgctagcaccatcaaacgagttgcaaacagatttatctttgaccaggatgttgctatatccgcgctggggcctatccagacactacctgattataactggttcagacgcagaacctacatgctccgttattagacgattcttttttttctttttttggagttgtaatgcatcacaattacacacctcgctcgaccattccaaacttggacatataggtcttacttttccaattcttcctcttgcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="72309" stop="71301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72009" g_stop="71919" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71918" i_stop="71802" i_length="117">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71801" g_stop="71601" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="292" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="293" polyA_stop="302"/>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E372575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72009" e_stop="71919"/>
          <exon e_start="71801" e_stop="71601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAGGTAGGATTCAAAAATATTTGAGACATGGGAGTTCATTGCTATGAAACAATCTTGTTCACTCAACTTTCCTTTATCTTATTTTCTGAGTTTAAACCAAAATTTTCTTCCTTCTGGCAGGATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGACGCAGAACCTACATGCTCCGTTATTAGACGATTCTTTTTTTTCTTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGCTCGACCATTCCAAACTTGGACATATAGGTCTTACTTTTCCAATTCTTCCTCTTGCCTA</genome_strand>
        <mrna_strand>AAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAG.....................................................................................................................GATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGACGCAGAACCTACATGCTCCGTTATTAGACGATTCTTTTTTTTCTTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGCTCGACCATTCCAAACTTGGACATATAGGTCTTACTTTTCCAATTCTTCCTCTTGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290581" ref_strand="+" ref_description="SGN-E290581 [cLES-20-H23]">
      <seq>aggattccagctacagagctgtttgcaagggttgatgctgtggatgctagcaccatcaaacgagttgcaaacagatttatctttgaccaggatgttgctatatccgcgctggggcctatccagacactacctgattataactggttcagacgcagaacctacatgctccgttattagacgattcttttttttctttttttggagttgtaatgcatcacaattacacacctcgctcgaccattccaaacttggacatataggtcttacttttccaattcttcctcttgcctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="72308" stop="71301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72008" g_stop="71919" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71918" i_stop="71802" i_length="117">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71801" g_stop="71601" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="291" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="292" polyA_stop="302"/>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E290581" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72008" e_stop="71919"/>
          <exon e_start="71801" e_stop="71601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAGGTAGGATTCAAAAATATTTGAGACATGGGAGTTCATTGCTATGAAACAATCTTGTTCACTCAACTTTCCTTTATCTTATTTTCTGAGTTTAAACCAAAATTTTCTTCCTTCTGGCAGGATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGACGCAGAACCTACATGCTCCGTTATTAGACGATTCTTTTTTTTCTTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGCTCGACCATTCCAAACTTGGACATATAGGTCTTACTTTTCCAATTCTTCCTCTTGCCTA</genome_strand>
        <mrna_strand>AGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAG.....................................................................................................................GATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGACGCAGAACCTACATGCTCCGTTATTAGACGATTCTTTTTTTTCTTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGCTCGACCATTCCAAACTTGGACATATAGGTCTTACTTTTCCAATTCTTCCTCTTGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372576" ref_strand="+" ref_description="SGN-E372576 [TUS-31-G7]">
      <seq>aggattccagctacagagctgtttgcaagggttgatgctgtggatgctagcaccatcaaacgagttgcaaacagatttatctttgaccaggatgttgctatatccgcgctggggcctatccagacactacctgattataactggttcagacgcagaacctacatgctccgttattagacgattcttttttttctttttttggagttgtaatgcatcacaattacacacctcgctcgaccattccaaacttggacatataggtcttacttttccaattcttcctcttgcctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="72308" stop="71301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72008" g_stop="71919" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71918" i_stop="71802" i_length="117">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71801" g_stop="71601" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="291" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="292" polyA_stop="302"/>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E372576" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72008" e_stop="71919"/>
          <exon e_start="71801" e_stop="71601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAGGTAGGATTCAAAAATATTTGAGACATGGGAGTTCATTGCTATGAAACAATCTTGTTCACTCAACTTTCCTTTATCTTATTTTCTGAGTTTAAACCAAAATTTTCTTCCTTCTGGCAGGATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGACGCAGAACCTACATGCTCCGTTATTAGACGATTCTTTTTTTTCTTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGCTCGACCATTCCAAACTTGGACATATAGGTCTTACTTTTCCAATTCTTCCTCTTGCCTA</genome_strand>
        <mrna_strand>AGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAG.....................................................................................................................GATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGACGCAGAACCTACATGCTCCGTTATTAGACGATTCTTTTTTTTCTTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGCTCGACCATTCCAAACTTGGACATATAGGTCTTACTTTTCCAATTCTTCCTCTTGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296569" ref_strand="+" ref_description="SGN-E296569 [cLET-39-A19]">
      <seq>taatgcaatccatgctgggcacttggaataaaaatgccggaggagggaaacacatgggctccgatctggcacaaagtgttggcattaatgaacttgctgagagcatgatgtcttttaacaccaactataaggatactggtttgttcggcgtgtatgctgttgcaaagcctgattgtttgagtgatttgtcctactgcattatgcgcgagataagcaaattgtgctaccgggtttcggatgctgatgtgactcgtgcttgcaaccagttgaagtcttctctcatgctacacattgatggaactagtcctgttgctgaagacattgggcgtcagctactcacatatggcagaaggattccagctacagagctgtttgcaagggttgatgctgtggatgctagcaccatcaaacgagttgcaaacagatttatctttgaccaggatgttgctatatccgcgctggggcctatccagacactacctgattataactggttcagacgcagaacctacatgctccgttattagacgattcttttttttctttttttggagttgtaatgcatcacaattacacacctcgctcgaccattccaaacttggacatataggtcttacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="74791" stop="71322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74491" g_stop="74434" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74433" i_stop="74339" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74338" g_stop="74225" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="167" r_length="109" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74224" i_stop="73339" i_length="886">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73338" g_stop="73240" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="266" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73239" i_stop="73149" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73148" g_stop="73083" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="332" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73082" i_stop="72027" i_length="1056">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72026" g_stop="71919" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="440" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71918" i_stop="71802" i_length="117">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71801" g_stop="71622" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="620" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E296569" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74491" e_stop="74434"/>
          <exon e_start="74338" e_stop="74225"/>
          <exon e_start="73338" e_stop="73240"/>
          <exon e_start="73148" e_stop="73083"/>
          <exon e_start="72026" e_stop="71919"/>
          <exon e_start="71801" e_stop="71622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGGGTGAGTGTATCACTAGTTCTTTTACAATTTATGTCATCGCAAGCATGTCAATGGATCTGTCTCATGTTTTTATGGGACTTCCTAATCATTTGCAGCTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAGCCATGATGTCTTTTTAACACCAACTATAAGGATACTGGTTTGTTCCGGCGTGGTATGCTGTTGCAAAAGGTACAAATCTTTAACACCTAAGAGTTCCTTCTACCTGGAGAGAATGTAGTATGATGATGCATTACCTTATTTTCTTCGCATTTTCTTCCATCAAATAAAATTTGTTTTGTTTTTCTTTTTTAATGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGACAGAGATAGATAGATAGAGAGAGAGAGAGAGTCTGAGAGGGGTGGATCTGTTGGTTAGCTGAACAGCTGCTATAAATGCAAGCTCTTGCTCGGCTGATTGGAGTATTAGAGTTTGATGTAAAGGTTTTAATGCACCACATCTTCTATCGTGGGGTTTATGTAAAATGTACGTTTTATCCTTCAGCTTGTTTTTGTTTTCATTATGATTAAAATGTAGTCTAGATTCTTGAATATGCTTAAAAAGTATTCTAAGTGTTTATTGGTTGTATATTGAATGCGGAGTGAAGTAGTTCTTTTTCAATGTCATCTACTGCTCATGTTTTGGATAGATGTAGTTCATATATTATTAGACAAGGTGTTACTCATCTGCTTGGATTTTTTGAGATATTGTGGTTAGTGTAAACTGAGTAATTTTATTTATTTGTTCTTAAAAGAAGCAGATCTTTTCTCTAATGACCAAAAAAAGACGGTTAGGTGTTGGTATTGTGACCCTTTTGACTGGCATGTGGTTGTAAATAATTCTACTATATATTAGGCAAGGTAGTTCTTATCTTCTTGGATTTTTTGAGATAATTTGGTTAGTAAAGTGAGCAATTTTTTTATTTGTTCTTAAAAGAAACATTTTTTTTCTCTAAAGACAAAATTAATATGATTAGGTGTTGTATTACCATCCTTTTTATGGTTGTGAATAATCCTTGTTTTATCTTAAATGAATTCTTAATGTGCAGCCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAGGTTTGTGTTACTTAATGTTAAACAGTCTGGCTAGTTGTTATTACTCCTTGCTGTTTTTCTTTGTTTCTCTCTAACCAATATCGGTTTGCAGTTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAGGTACTATTCTGATATCCGATTCTGTGGTTGTACACATGTGTTTTGTCATGATTGTAATTAGTATTTTCTCATTAAGTTTATTCCTTGTAATTTCGGGGAGAAGTGGTGGGATTGGGTGGTATCATAGATAAGACGCTGCAAATGTAACTTAATTCCTTCTCTCACGGTATTAGTTTCCAGAAGAATGTTCTGGACACCTACATATATGTGCATAAAAGGGACACTGAACTGCTTCATGTACTTGAATCATTCCATGACCATAAACATTCTGAAGTAGAAGCTATAATAGTATCGAAGAGGATATTTTAGGAACTTTGTTACTCTTGGAGCAGTTTTAGTTAAACCGTGCCTAAGCCTACTAATGGCACTTCCCTACCCTAGATGATGACGATAGTTTGGTCCATTATTGCATATAGATTCTGAATTTCAAGATTTCACGATGCCTGAATAATCCTCTTCACCACTATAACAGCTTCTACTACCAATATTACTGCAACTAAATATAAACACGTGTTAGCCATATCAGCAGCAATTCACTGACACATTCCGTATTTGGTTCATTAAGTTCATTTTTGTTAGAGGTAGTGTAACTTGGTGGTGCAGTACAACATCAAGTAGCAGCCTAATTATGCATGCTTAATGTCTGAATAGATTAGAACAAAATGAATGCTGAAAGGTGTTGCTGCCAGCTGGTTGGTAAAAATAGCCCTTAACAGACCTTATAAGAAGAAAAATTGGAAAACAAAAAAGAACAGCTCTTAAACCGCAGTACCTTTGCTCATGTTGAGTTAAGAAAAAACTCTAATGTGAAGAGCCAAATGATCAAAGTTTTGCTGACAAGTTTTGAGTGTGTCATCAAGTATTTGTGTTTTTGCATGTCAAGCGTACTGCAACATCTGCTTGTAAGTGGAGAACATAGGTTGATAGCCCCCCCCTCCCCCCCTCCCCCCCTCTCCCTCCTTTCCAATATGTGGAAAAATTGTATTTTATGTAAGCTTGACTTCGTTAGGATGGGATCCAGTGATTATTTGTAAACTAAGATCATCCTGCTTGCAGCTACTCACATATGGCAGAAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAGGTAGGATTCAAAAATATTTGAGACATGGGAGTTCATTGCTATGAAACAATCTTGTTCACTCAACTTTCCTTTATCTTATTTTCTGAGTTTAAACCAAAATTTTCTTCCTTCTGGCAGGATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGACGCAGAACCTACATGCTCCGTTATTAGACGATTCTTTTTTTTCTTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGCTCGACCATTCCAAACTTGGACATATAGGTCTTACTTT</genome_strand>
        <mrna_strand>TAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGG...............................................................................................CTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAG-CATGATGTC-TTTTAACACCAACTATAAGGATACTGGTTTGTT-CGGCGT-GTATGCTGTTGC-AAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAG...........................................................................................TTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTCACATATGGCAGAAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAG.....................................................................................................................GATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGACGCAGAACCTACATGCTCCGTTATTAGACGATTCTTTTTTTTCTTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGCTCGACCATTCCAAACTTGGACATATAGGTCTTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745727" ref_strand="+" ref_description="SGN-E745727 [GI|47105143]">
      <seq>ggagcttcgttcccatttccctctttctctgtataggaaccacaacaaaccctagcctaatttacaagccatagccatgacgatccggcagctcttaaccctagcccgccggtcccgaaacctatcctcatcccattcactgcggcgtctttcttcggcgtctgccgccgtcgccgccacatcctcctccgccccggccatcggtccgccacccccagatgcaatgatctacgatcgattggctgaagacgttaaacgaaagatcaagagactcgagaatcctgattcccgattccttcagtacaactcgccacacccaactttagccgaccacacatcaatcctcagcttcccctctacgcgcgtgactacactaccatcgggcctgcgtgtggccacggagactaatctcgctgtcaagactgccaccgttggggtattcattgatgcagggtcaaggtttgagaccgatgagactaatggaacagctcattttcttgagcatatgatctttaagggtactgaaaagaggacttcttgggaaatggaggaggagattgagaatatgggtggacatttgaatgcatatacttccagggagcaaacagcatactatgctaaagtgttggataatgacgtccctgtagctttggatattttggctgatatacttcagaattctaagttcgaagagaaaaagattgaacgtgaacgtgatgtcatcctcagggagatggaggaggtcgaaggtcaaacagaggaagtcatctttgaccacttgcattcaactgcattccagtactcacctttgggtaggactattcttggacctgcccagaatataaagacaatcaccagaagtcatctgaaggactacatatcaacacattataccgctcccagaatggtaattgttgcttctgggcctgttaaacatgaagaatttgttgagcaagttaagaaacagtttactaaactttcaaccaatccgagtacggcctcagaattggttgccagagaaccagcaatttttacaggttcagaggttagggtaattgatgatgacattccattggcacaatttgctgttgcttttcaaggggcaccgtggactgatccagatgccattccactgatggtaatgcaatccatgctgggcacttggaataaaaatgccggaggagggaaacacatgggctccgatctggcacaaagtgttggcattaatgaacttgctgagagcatgatgtcttttaacaccaactataaggatactggtttgttcggcgtgtatgctgttgcaaagcctgattgtttgagtgatttgtcctactgcattatgcgcgagataagcaaattgtgctaccgggtttcggatgctgatgtgactcgtgcttgcaaccagttgaagtcttctctcatgctacacattgatggaactagtcctgttgctgaagacattgggcgtcagctactcacatatggcagaaggattccagctacagagctgtttgcaagggttgatgctgtggatgctagcaccatcaaacgagttgcaaacagatttatctttgaccaggatgttgctatatccgcgctggggcctatccagacactacctgattataactggttcagacgcagaacctacatgctccgttattagacgattcttttttttctttttttggagttgtaatgcatcacaattacacacctcgctcgaccattccaaacttggacatataggtcttacttttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76967" stop="71317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76668" g_stop="75927" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75926" i_stop="75103" i_length="824">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75102" g_stop="74938" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="907" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74937" i_stop="74813" i_length="125">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74812" g_stop="74675" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="908" r_stop="1045" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74674" i_stop="74586" i_length="89">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74585" g_stop="74434" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1046" r_stop="1197" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74433" i_stop="74339" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74338" g_stop="74225" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1198" r_stop="1306" r_length="109" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74224" i_stop="73339" i_length="886">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73338" g_stop="73240" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1307" r_stop="1405" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="73239" i_stop="73149" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="73148" g_stop="73083" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1406" r_stop="1471" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="73082" i_stop="72027" i_length="1056">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="72026" g_stop="71919" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1472" r_stop="1579" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="71918" i_stop="71802" i_length="117">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="71801" g_stop="71632" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1580" r_stop="1749" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1762" polyA_stop="1778"/>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E745727" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1754</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76668" e_stop="75927"/>
          <exon e_start="75102" e_stop="74938"/>
          <exon e_start="74812" e_stop="74675"/>
          <exon e_start="74585" e_stop="74434"/>
          <exon e_start="74338" e_stop="74225"/>
          <exon e_start="73338" e_stop="73240"/>
          <exon e_start="73148" e_stop="73083"/>
          <exon e_start="72026" e_stop="71919"/>
          <exon e_start="71801" e_stop="71632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTTCGTTCCCATTTCCCTCTTTCTCTGTATAGGAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAGGTGCACTTTTTTTCTCTATTCTTTGATCTCTGAATATCAAGTTTGCTGTTTTTTCGATCTTTGTCAATGAGCTGCAATAACCCTACGTTATATTCTACTAGTCTCTGCATGCACTTGAAGCTTAACTAGTAAGCTGGTCACTAAAAACTAATTGGCATATTCATGTCAATTGACTAGTTTTACACTGACCGCCAACCTTGCAACCCTCATTACCCTCACGTAGGGTAAGAACTTGCTCTAACCCCAGTTCTGAAATTCAAGATCACTTGCGTTCTTGTTGAGTTCCCTGGATGCTAACAGGTTTTAACTTTACTGTTTCTTCGTTTTTCTTTTACTTCCATTTAAAATTACCTCTAGCTTCTTCAGTTTTATGAAAGTATACAGTCCATAGTATTTGAGTACTGTTGCAGAGAACTTTCAAAAGTAAATCTAATTGTATTATTTAGATTCAAAGAAATATCTGAATCCAATGAAACATAGGTAGATGTTGAAATGGTTTACTGATTAATATCCTAAGATTTTATTGAGGATTATTGTGCTTCAGGGAGTTGCCCTTGTTGATACAATGTAGTATTAAGTACTAACCGCTATGTATCCTCATTATTTGAGAGATTAAGAGCCATAATGAAGGAAATGAAATGGCCGTGCATTAAGTTTGTGATTGACCTTACAAAGAGAAGACGTTCCTCTCTAGAGAAACAGAAGAGAGGGAACTCCACACAATCCAAAAAGTTACTCCTGTAGTGAGCTTATGAAACCTATCATGCTGCCTGTATCATATACAATCTGAAAATTAGCAATCCATTATAACTATCTGTTTGCAGGTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATGGTATTTAGAAATGATTTCATCTTCTTTTTCTTAGTCTGTCTTGCTTGTTAGCTCAAACTTGATTCTTCAAGTATTATCATAATCTGCTGTATTAACTCTAGCCTTTCCCGTGGACATTAAAATAGGTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTTAAGAAACAGTTTACTAAACTTTCAACCAATCCGAGTACGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAGGTATGCCTATCTTATCAGGGTTCGTTACGCCTTCACGGTGCTTTTTTCAGTAGAATAAGTTCTTATGCTGATCATTTTACCAAAATCAGGTTAGGGTAATTGATGATGACATTCCATTGGCACAATTTGCTGTTGCTTTTCAAGGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGGGTGAGTGTATCACTAGTTCTTTTACAATTTATGTCATCGCAAGCATGTCAATGGATCTGTCTCATGTTTTTATGGGACTTCCTAATCATTTGCAGCTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAGCCATGATGTCTTTTTAACACCAACTATAAGGATACTGGTTTGTTCCGGCGTGGTATGCTGTTGCAAAAGGTACAAATCTTTAACACCTAAGAGTTCCTTCTACCTGGAGAGAATGTAGTATGATGATGCATTACCTTATTTTCTTCGCATTTTCTTCCATCAAATAAAATTTGTTTTGTTTTTCTTTTTTAATGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGACAGAGATAGATAGATAGAGAGAGAGAGAGAGTCTGAGAGGGGTGGATCTGTTGGTTAGCTGAACAGCTGCTATAAATGCAAGCTCTTGCTCGGCTGATTGGAGTATTAGAGTTTGATGTAAAGGTTTTAATGCACCACATCTTCTATCGTGGGGTTTATGTAAAATGTACGTTTTATCCTTCAGCTTGTTTTTGTTTTCATTATGATTAAAATGTAGTCTAGATTCTTGAATATGCTTAAAAAGTATTCTAAGTGTTTATTGGTTGTATATTGAATGCGGAGTGAAGTAGTTCTTTTTCAATGTCATCTACTGCTCATGTTTTGGATAGATGTAGTTCATATATTATTAGACAAGGTGTTACTCATCTGCTTGGATTTTTTGAGATATTGTGGTTAGTGTAAACTGAGTAATTTTATTTATTTGTTCTTAAAAGAAGCAGATCTTTTCTCTAATGACCAAAAAAAGACGGTTAGGTGTTGGTATTGTGACCCTTTTGACTGGCATGTGGTTGTAAATAATTCTACTATATATTAGGCAAGGTAGTTCTTATCTTCTTGGATTTTTTGAGATAATTTGGTTAGTAAAGTGAGCAATTTTTTTATTTGTTCTTAAAAGAAACATTTTTTTTCTCTAAAGACAAAATTAATATGATTAGGTGTTGTATTACCATCCTTTTTATGGTTGTGAATAATCCTTGTTTTATCTTAAATGAATTCTTAATGTGCAGCCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAGGTTTGTGTTACTTAATGTTAAACAGTCTGGCTAGTTGTTATTACTCCTTGCTGTTTTTCTTTGTTTCTCTCTAACCAATATCGGTTTGCAGTTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAGGTACTATTCTGATATCCGATTCTGTGGTTGTACACATGTGTTTTGTCATGATTGTAATTAGTATTTTCTCATTAAGTTTATTCCTTGTAATTTCGGGGAGAAGTGGTGGGATTGGGTGGTATCATAGATAAGACGCTGCAAATGTAACTTAATTCCTTCTCTCACGGTATTAGTTTCCAGAAGAATGTTCTGGACACCTACATATATGTGCATAAAAGGGACACTGAACTGCTTCATGTACTTGAATCATTCCATGACCATAAACATTCTGAAGTAGAAGCTATAATAGTATCGAAGAGGATATTTTAGGAACTTTGTTACTCTTGGAGCAGTTTTAGTTAAACCGTGCCTAAGCCTACTAATGGCACTTCCCTACCCTAGATGATGACGATAGTTTGGTCCATTATTGCATATAGATTCTGAATTTCAAGATTTCACGATGCCTGAATAATCCTCTTCACCACTATAACAGCTTCTACTACCAATATTACTGCAACTAAATATAAACACGTGTTAGCCATATCAGCAGCAATTCACTGACACATTCCGTATTTGGTTCATTAAGTTCATTTTTGTTAGAGGTAGTGTAACTTGGTGGTGCAGTACAACATCAAGTAGCAGCCTAATTATGCATGCTTAATGTCTGAATAGATTAGAACAAAATGAATGCTGAAAGGTGTTGCTGCCAGCTGGTTGGTAAAAATAGCCCTTAACAGACCTTATAAGAAGAAAAATTGGAAAACAAAAAAGAACAGCTCTTAAACCGCAGTACCTTTGCTCATGTTGAGTTAAGAAAAAACTCTAATGTGAAGAGCCAAATGATCAAAGTTTTGCTGACAAGTTTTGAGTGTGTCATCAAGTATTTGTGTTTTTGCATGTCAAGCGTACTGCAACATCTGCTTGTAAGTGGAGAACATAGGTTGATAGCCCCCCCCTCCCCCCCTCCCCCCCTCTCCCTCCTTTCCAATATGTGGAAAAATTGTATTTTATGTAAGCTTGACTTCGTTAGGATGGGATCCAGTGATTATTTGTAAACTAAGATCATCCTGCTTGCAGCTACTCACATATGGCAGAAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAGGTAGGATTCAAAAATATTTGAGACATGGGAGTTCATTGCTATGAAACAATCTTGTTCACTCAACTTTCCTTTATCTTATTTTCTGAGTTTAAACCAAAATTTTCTTCCTTCTGGCAGGATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGACGCAGAACCTACATGCTCCGTTATTAGACGATTCTTTTTTTTCTTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGCTCGACCATTCCAAACTTGGACATATAG</genome_strand>
        <mrna_strand>GGAGCTTCGTTCCCATTTCCCTCTTTCTCTGTATAGGAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATG.............................................................................................................................GTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTTAAGAAACAGTTTACTAAACTTTCAACCAATCCGAGTACGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAG.........................................................................................GTTAGGGTAATTGATGATGACATTCCATTGGCACAATTTGCTGTTGCTTTTCAAGGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGG...............................................................................................CTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAG-CATGATGTC-TTTTAACACCAACTATAAGGATACTGGTTTGTT-CGGCGT-GTATGCTGTTGC-AAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAG...........................................................................................TTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTCACATATGGCAGAAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAG.....................................................................................................................GATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGACGCAGAACCTACATGCTCCGTTATTAGACGATTCTTTTTTTTCTTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGCTCGACCATTCCAAACTTGGACATATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E692654" ref_strand="+" ref_description="SGN-E692654 [LH_Ea09E12]">
      <seq>taagtcatctgaaggactacatatcaacacattataccgctcccagaatggtaattgttgcttctgggcctgttaaacatgaagaatttgttgagcaagttaagaaacaatttactaaactttcaaccaatccgactacggcctcagaattggttgccagagaaccagcaatttttacaggttcagaggttagggtaattgatgatgacattccattggcacaatttgctgttgcttttcaaggggcaccgtggactgatccagatgccattccactgatggtaatgcaatccatgctgggcacttggaataaaaatgccggaggagggaaacacatgggctccgatctggcacaaagtgttggcattaatgaacttgctgagagcatgatgtcttttaacaccaactataaggatactggtctgttcggcgtgtatgctgttgcaaagcctgattgtttgagtgatttgtcctactgcattatgcgcgagataagcaaattgtgctaccgggtttcggatgctgatgtgactcgtgcttgcaaccagttgaagtcttctctcatgctacacattgatggaactagtcctgttgctgaagacattgggcgtcagctactcacatatggcagaaggattccagctacagagctgtttgcaagggttgatgctgtggatgctagcaccatcaaacgagttgcaaacagatttatctttgaccaggatgttgctatatccgcgctggggcctatccagacactacctgattataactggttcagatgcagaacctacatgctccgttattagacgattctttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="75286" stop="71398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74987" g_stop="74938" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74937" i_stop="74813" i_length="125">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74812" g_stop="74675" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="188" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74674" i_stop="74586" i_length="89">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74585" g_stop="74434" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="340" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74433" i_stop="74339" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74338" g_stop="74225" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="449" r_length="109" r_score="0.947"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74224" i_stop="73339" i_length="886">
            <donor d_prob="0.984" d_score="0.92"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73338" g_stop="73240" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="548" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73239" i_stop="73149" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73148" g_stop="73083" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="614" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="73082" i_stop="72027" i_length="1056">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="72026" g_stop="71919" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="722" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71918" i_stop="71802" i_length="117">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="71801" g_stop="71698" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="826" r_length="104" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E692654" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74987" e_stop="74938"/>
          <exon e_start="74812" e_stop="74675"/>
          <exon e_start="74585" e_stop="74434"/>
          <exon e_start="74338" e_stop="74225"/>
          <exon e_start="73338" e_stop="73240"/>
          <exon e_start="73148" e_stop="73083"/>
          <exon e_start="72026" e_stop="71919"/>
          <exon e_start="71801" e_stop="71698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATGGTATTTAGAAATGATTTCATCTTCTTTTTCTTAGTCTGTCTTGCTTGTTAGCTCAAACTTGATTCTTCAAGTATTATCATAATCTGCTGTATTAACTCTAGCCTTTCCCGTGGACATTAAAATAGGTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTTAAGAAACAGTTTACTAAACTTTCAACCAATCCGAGTACGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAGGTATGCCTATCTTATCAGGGTTCGTTACGCCTTCACGGTGCTTTTTTCAGTAGAATAAGTTCTTATGCTGATCATTTTACCAAAATCAGGTTAGGGTAATTGATGATGACATTCCATTGGCACAATTTGCTGTTGCTTTTCAAGGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGGGTGAGTGTATCACTAGTTCTTTTACAATTTATGTCATCGCAAGCATGTCAATGGATCTGTCTCATGTTTTTATGGGACTTCCTAATCATTTGCAGCTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAGCCATGATGTCTTTTTAACACCAACTATAAGGATACTGGTTTGTTCCGGCGTGGTATGCTGTTGCAAAAGGTACAAATCTTTAACACCTAAGAGTTCCTTCTACCTGGAGAGAATGTAGTATGATGATGCATTACCTTATTTTCTTCGCATTTTCTTCCATCAAATAAAATTTGTTTTGTTTTTCTTTTTTAATGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGACAGAGATAGATAGATAGAGAGAGAGAGAGAGTCTGAGAGGGGTGGATCTGTTGGTTAGCTGAACAGCTGCTATAAATGCAAGCTCTTGCTCGGCTGATTGGAGTATTAGAGTTTGATGTAAAGGTTTTAATGCACCACATCTTCTATCGTGGGGTTTATGTAAAATGTACGTTTTATCCTTCAGCTTGTTTTTGTTTTCATTATGATTAAAATGTAGTCTAGATTCTTGAATATGCTTAAAAAGTATTCTAAGTGTTTATTGGTTGTATATTGAATGCGGAGTGAAGTAGTTCTTTTTCAATGTCATCTACTGCTCATGTTTTGGATAGATGTAGTTCATATATTATTAGACAAGGTGTTACTCATCTGCTTGGATTTTTTGAGATATTGTGGTTAGTGTAAACTGAGTAATTTTATTTATTTGTTCTTAAAAGAAGCAGATCTTTTCTCTAATGACCAAAAAAAGACGGTTAGGTGTTGGTATTGTGACCCTTTTGACTGGCATGTGGTTGTAAATAATTCTACTATATATTAGGCAAGGTAGTTCTTATCTTCTTGGATTTTTTGAGATAATTTGGTTAGTAAAGTGAGCAATTTTTTTATTTGTTCTTAAAAGAAACATTTTTTTTCTCTAAAGACAAAATTAATATGATTAGGTGTTGTATTACCATCCTTTTTATGGTTGTGAATAATCCTTGTTTTATCTTAAATGAATTCTTAATGTGCAGCCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAGGTTTGTGTTACTTAATGTTAAACAGTCTGGCTAGTTGTTATTACTCCTTGCTGTTTTTCTTTGTTTCTCTCTAACCAATATCGGTTTGCAGTTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAGGTACTATTCTGATATCCGATTCTGTGGTTGTACACATGTGTTTTGTCATGATTGTAATTAGTATTTTCTCATTAAGTTTATTCCTTGTAATTTCGGGGAGAAGTGGTGGGATTGGGTGGTATCATAGATAAGACGCTGCAAATGTAACTTAATTCCTTCTCTCACGGTATTAGTTTCCAGAAGAATGTTCTGGACACCTACATATATGTGCATAAAAGGGACACTGAACTGCTTCATGTACTTGAATCATTCCATGACCATAAACATTCTGAAGTAGAAGCTATAATAGTATCGAAGAGGATATTTTAGGAACTTTGTTACTCTTGGAGCAGTTTTAGTTAAACCGTGCCTAAGCCTACTAATGGCACTTCCCTACCCTAGATGATGACGATAGTTTGGTCCATTATTGCATATAGATTCTGAATTTCAAGATTTCACGATGCCTGAATAATCCTCTTCACCACTATAACAGCTTCTACTACCAATATTACTGCAACTAAATATAAACACGTGTTAGCCATATCAGCAGCAATTCACTGACACATTCCGTATTTGGTTCATTAAGTTCATTTTTGTTAGAGGTAGTGTAACTTGGTGGTGCAGTACAACATCAAGTAGCAGCCTAATTATGCATGCTTAATGTCTGAATAGATTAGAACAAAATGAATGCTGAAAGGTGTTGCTGCCAGCTGGTTGGTAAAAATAGCCCTTAACAGACCTTATAAGAAGAAAAATTGGAAAACAAAAAAGAACAGCTCTTAAACCGCAGTACCTTTGCTCATGTTGAGTTAAGAAAAAACTCTAATGTGAAGAGCCAAATGATCAAAGTTTTGCTGACAAGTTTTGAGTGTGTCATCAAGTATTTGTGTTTTTGCATGTCAAGCGTACTGCAACATCTGCTTGTAAGTGGAGAACATAGGTTGATAGCCCCCCCCTCCCCCCCTCCCCCCCTCTCCCTCCTTTCCAATATGTGGAAAAATTGTATTTTATGTAAGCTTGACTTCGTTAGGATGGGATCCAGTGATTATTTGTAAACTAAGATCATCCTGCTTGCAGCTACTCACATATGGCAGAAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAGGTAGGATTCAAAAATATTTGAGACATGGGAGTTCATTGCTATGAAACAATCTTGTTCACTCAACTTTCCTTTATCTTATTTTCTGAGTTTAAACCAAAATTTTCTTCCTTCTGGCAGGATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGACGCAGAACCTACATGCTCCGTTATTAGACGATTCTTTTTTTTCT</genome_strand>
        <mrna_strand>TAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATG.............................................................................................................................GTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTTAAGAAACAATTTACTAAACTTTCAACCAATCCGACTACGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAG.........................................................................................GTTAGGGTAATTGATGATGACATTCCATTGGCACAATTTGCTGTTGCTTTTCAAGGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGG...............................................................................................CTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAG-CATGATGTC-TTTTAACACCAACTATAAGGATACTGGTCTGTT-CGGCGT-GTATGCTGTTGC-AAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAG...........................................................................................TTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTCACATATGGCAGAAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAG.....................................................................................................................GATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGATGCAGAACCTACATGCTCCGTTATTAGACGATTCTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290107" ref_strand="+" ref_description="SGN-E290107 [cLET-5-L17]">
      <seq>taatgcaatccatgctgggcacttggaataaaaatgccggaggagggaaacacatgggctccgatctggcacaaagtgttggcattaatgaacttgctgagagcatgatgtcttttaacaccaactataaggatactggtttgttcggcgtgtatgctgttgcaaagcctgattgtttgagtgatttgtcctactgcattatgcgcgagataagcaaattgtgctaccgggtttcggatgctgatgtgactcgtgcttgcaaccagttgaagtcttctctcatgctacacattgatggaactagtcctgttgctgaagacattgggcgtcagctactcacatatggcagaaggattccagctacagagctgtttgcaagggttgatgctgtggatgctagcaccatcaaacgagttgcaaacagatttatctttgaccaggatgttgctatatccgcgctggggcctatccagacactacctgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="74791" stop="71455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74491" g_stop="74434" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74433" i_stop="74339" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74338" g_stop="74225" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="167" r_length="109" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74224" i_stop="73339" i_length="886">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73338" g_stop="73240" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="266" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73239" i_stop="73149" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73148" g_stop="73083" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="332" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73082" i_stop="72027" i_length="1056">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72026" g_stop="71919" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="440" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71918" i_stop="71802" i_length="117">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71801" g_stop="71755" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="487" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E290107" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74491" e_stop="74434"/>
          <exon e_start="74338" e_stop="74225"/>
          <exon e_start="73338" e_stop="73240"/>
          <exon e_start="73148" e_stop="73083"/>
          <exon e_start="72026" e_stop="71919"/>
          <exon e_start="71801" e_stop="71755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGGGTGAGTGTATCACTAGTTCTTTTACAATTTATGTCATCGCAAGCATGTCAATGGATCTGTCTCATGTTTTTATGGGACTTCCTAATCATTTGCAGCTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAGCCATGATGTCTTTTTAACACCAACTATAAGGATACTGGTTTGTTCCGGCGTGGTATGCTGTTGCAAAAGGTACAAATCTTTAACACCTAAGAGTTCCTTCTACCTGGAGAGAATGTAGTATGATGATGCATTACCTTATTTTCTTCGCATTTTCTTCCATCAAATAAAATTTGTTTTGTTTTTCTTTTTTAATGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGACAGAGATAGATAGATAGAGAGAGAGAGAGAGTCTGAGAGGGGTGGATCTGTTGGTTAGCTGAACAGCTGCTATAAATGCAAGCTCTTGCTCGGCTGATTGGAGTATTAGAGTTTGATGTAAAGGTTTTAATGCACCACATCTTCTATCGTGGGGTTTATGTAAAATGTACGTTTTATCCTTCAGCTTGTTTTTGTTTTCATTATGATTAAAATGTAGTCTAGATTCTTGAATATGCTTAAAAAGTATTCTAAGTGTTTATTGGTTGTATATTGAATGCGGAGTGAAGTAGTTCTTTTTCAATGTCATCTACTGCTCATGTTTTGGATAGATGTAGTTCATATATTATTAGACAAGGTGTTACTCATCTGCTTGGATTTTTTGAGATATTGTGGTTAGTGTAAACTGAGTAATTTTATTTATTTGTTCTTAAAAGAAGCAGATCTTTTCTCTAATGACCAAAAAAAGACGGTTAGGTGTTGGTATTGTGACCCTTTTGACTGGCATGTGGTTGTAAATAATTCTACTATATATTAGGCAAGGTAGTTCTTATCTTCTTGGATTTTTTGAGATAATTTGGTTAGTAAAGTGAGCAATTTTTTTATTTGTTCTTAAAAGAAACATTTTTTTTCTCTAAAGACAAAATTAATATGATTAGGTGTTGTATTACCATCCTTTTTATGGTTGTGAATAATCCTTGTTTTATCTTAAATGAATTCTTAATGTGCAGCCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAGGTTTGTGTTACTTAATGTTAAACAGTCTGGCTAGTTGTTATTACTCCTTGCTGTTTTTCTTTGTTTCTCTCTAACCAATATCGGTTTGCAGTTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAGGTACTATTCTGATATCCGATTCTGTGGTTGTACACATGTGTTTTGTCATGATTGTAATTAGTATTTTCTCATTAAGTTTATTCCTTGTAATTTCGGGGAGAAGTGGTGGGATTGGGTGGTATCATAGATAAGACGCTGCAAATGTAACTTAATTCCTTCTCTCACGGTATTAGTTTCCAGAAGAATGTTCTGGACACCTACATATATGTGCATAAAAGGGACACTGAACTGCTTCATGTACTTGAATCATTCCATGACCATAAACATTCTGAAGTAGAAGCTATAATAGTATCGAAGAGGATATTTTAGGAACTTTGTTACTCTTGGAGCAGTTTTAGTTAAACCGTGCCTAAGCCTACTAATGGCACTTCCCTACCCTAGATGATGACGATAGTTTGGTCCATTATTGCATATAGATTCTGAATTTCAAGATTTCACGATGCCTGAATAATCCTCTTCACCACTATAACAGCTTCTACTACCAATATTACTGCAACTAAATATAAACACGTGTTAGCCATATCAGCAGCAATTCACTGACACATTCCGTATTTGGTTCATTAAGTTCATTTTTGTTAGAGGTAGTGTAACTTGGTGGTGCAGTACAACATCAAGTAGCAGCCTAATTATGCATGCTTAATGTCTGAATAGATTAGAACAAAATGAATGCTGAAAGGTGTTGCTGCCAGCTGGTTGGTAAAAATAGCCCTTAACAGACCTTATAAGAAGAAAAATTGGAAAACAAAAAAGAACAGCTCTTAAACCGCAGTACCTTTGCTCATGTTGAGTTAAGAAAAAACTCTAATGTGAAGAGCCAAATGATCAAAGTTTTGCTGACAAGTTTTGAGTGTGTCATCAAGTATTTGTGTTTTTGCATGTCAAGCGTACTGCAACATCTGCTTGTAAGTGGAGAACATAGGTTGATAGCCCCCCCCTCCCCCCCTCCCCCCCTCTCCCTCCTTTCCAATATGTGGAAAAATTGTATTTTATGTAAGCTTGACTTCGTTAGGATGGGATCCAGTGATTATTTGTAAACTAAGATCATCCTGCTTGCAGCTACTCACATATGGCAGAAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAGGTAGGATTCAAAAATATTTGAGACATGGGAGTTCATTGCTATGAAACAATCTTGTTCACTCAACTTTCCTTTATCTTATTTTCTGAGTTTAAACCAAAATTTTCTTCCTTCTGGCAGGATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTA</genome_strand>
        <mrna_strand>TAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGG...............................................................................................CTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAG-CATGATGTC-TTTTAACACCAACTATAAGGATACTGGTTTGTT-CGGCGT-GTATGCTGTTGC-AAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAG...........................................................................................TTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTCACATATGGCAGAAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAG.....................................................................................................................GATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312613" ref_strand="+" ref_description="SGN-E312613 [cLEZ-20-H17]">
      <seq>gaatttgttgagcaagttaagaaacagtttactaaacttgcaaccaatccgagtacggcctcagaattggttgccagagaaccagcaatttttacaggttcagaggttagggtaattgatgatgacattccattggcacaatttgctgttgcttttcaaggggcaccgtggactgatccagatgccattccactgatggtaatgcaatccatgctgggcacttggaataaaaatgccggaggagggaaacacatgggctccgatctggcacaaagtgttggcattaatgaacttgctgagagcatgatgtcttttaacaccaactataaggatactggtttgttcggcgtgtatgctgttgcaaagcctgattgtttgagtgatttgtcctactgcattatgcgcgagataagcaaattgtgctaccgggtttcggatgctgatgtgactcgtgcttgcaaccagttgaagtcttctctcatgctacacattgatggaactagtcctgttgctgaagacattgggcgtcagctactcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="75079" stop="72778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74779" g_stop="74675" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74674" i_stop="74586" i_length="89">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74585" g_stop="74434" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="257" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74433" i_stop="74339" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74338" g_stop="74225" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="366" r_length="109" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74224" i_stop="73339" i_length="886">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73338" g_stop="73240" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="465" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73239" i_stop="73149" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73148" g_stop="73083" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="531" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E312613" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74779" e_stop="74675"/>
          <exon e_start="74585" e_stop="74434"/>
          <exon e_start="74338" e_stop="74225"/>
          <exon e_start="73338" e_stop="73240"/>
          <exon e_start="73148" e_stop="73083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTGTTGAGCAAGTTAAGAAACAGTTTACTAAACTTTCAACCAATCCGAGTACGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAGGTATGCCTATCTTATCAGGGTTCGTTACGCCTTCACGGTGCTTTTTTCAGTAGAATAAGTTCTTATGCTGATCATTTTACCAAAATCAGGTTAGGGTAATTGATGATGACATTCCATTGGCACAATTTGCTGTTGCTTTTCAAGGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGGGTGAGTGTATCACTAGTTCTTTTACAATTTATGTCATCGCAAGCATGTCAATGGATCTGTCTCATGTTTTTATGGGACTTCCTAATCATTTGCAGCTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAGCCATGATGTCTTTTTAACACCAACTATAAGGATACTGGTTTGTTCCGGCGTGGTATGCTGTTGCAAAAGGTACAAATCTTTAACACCTAAGAGTTCCTTCTACCTGGAGAGAATGTAGTATGATGATGCATTACCTTATTTTCTTCGCATTTTCTTCCATCAAATAAAATTTGTTTTGTTTTTCTTTTTTAATGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGACAGAGATAGATAGATAGAGAGAGAGAGAGAGTCTGAGAGGGGTGGATCTGTTGGTTAGCTGAACAGCTGCTATAAATGCAAGCTCTTGCTCGGCTGATTGGAGTATTAGAGTTTGATGTAAAGGTTTTAATGCACCACATCTTCTATCGTGGGGTTTATGTAAAATGTACGTTTTATCCTTCAGCTTGTTTTTGTTTTCATTATGATTAAAATGTAGTCTAGATTCTTGAATATGCTTAAAAAGTATTCTAAGTGTTTATTGGTTGTATATTGAATGCGGAGTGAAGTAGTTCTTTTTCAATGTCATCTACTGCTCATGTTTTGGATAGATGTAGTTCATATATTATTAGACAAGGTGTTACTCATCTGCTTGGATTTTTTGAGATATTGTGGTTAGTGTAAACTGAGTAATTTTATTTATTTGTTCTTAAAAGAAGCAGATCTTTTCTCTAATGACCAAAAAAAGACGGTTAGGTGTTGGTATTGTGACCCTTTTGACTGGCATGTGGTTGTAAATAATTCTACTATATATTAGGCAAGGTAGTTCTTATCTTCTTGGATTTTTTGAGATAATTTGGTTAGTAAAGTGAGCAATTTTTTTATTTGTTCTTAAAAGAAACATTTTTTTTCTCTAAAGACAAAATTAATATGATTAGGTGTTGTATTACCATCCTTTTTATGGTTGTGAATAATCCTTGTTTTATCTTAAATGAATTCTTAATGTGCAGCCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAGGTTTGTGTTACTTAATGTTAAACAGTCTGGCTAGTTGTTATTACTCCTTGCTGTTTTTCTTTGTTTCTCTCTAACCAATATCGGTTTGCAGTTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAG</genome_strand>
        <mrna_strand>GAATTTGTTGAGCAAGTTAAGAAACAGTTTACTAAACTTGCAACCAATCCGAGTACGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAG.........................................................................................GTTAGGGTAATTGATGATGACATTCCATTGGCACAATTTGCTGTTGCTTTTCAAGGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGG...............................................................................................CTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAG-CATGATGTC-TTTTAACACCAACTATAAGGATACTGGTTTGTT-CGGCGT-GTATGCTGTTGC-AAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAG...........................................................................................TTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309639" ref_strand="+" ref_description="SGN-E309639 [cLEY-26-D4]">
      <seq>tttgggtaggactattcttggacctgcccagaatataaagacaatcaccagaagtcatctgaaggactacatatcaacacattataccgctcccagaatggtaattgttgcttctgggcctgttaaacatgaagaatttgttgagcaagttaagaaacagtttactaaactttcaaccaatccgagtacggcctcagaattggttgccagagaaccagcaatttttacaggttcagaggttagggtaattgatgatgacattccattggcacaatttgctgttgcttttcaaggggcaccgtggactgatccagatgccattccactgatggtaatgcaatccatgctgggcacttggaataaaaatgccggaggagggaaacacatgggctccgatctggcacaaagtgttggcattaatgaacttgctgagagcatgatgtcttttaacaccaactataaggatactggtttgttcggcgtgtatgctgttgcaaagcctgattgtttgagtgatttgtcctactgcattatgcgcgagataagcaaattgtgctaccgggtttcggatgctgatgtgactcgtgcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="75337" stop="72946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75037" g_stop="74938" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74937" i_stop="74813" i_length="125">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74812" g_stop="74675" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="238" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74674" i_stop="74586" i_length="89">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74585" g_stop="74434" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="390" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74433" i_stop="74339" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74338" g_stop="74225" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="499" r_length="109" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74224" i_stop="73339" i_length="886">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73338" g_stop="73246" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="592" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E309639" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75037" e_stop="74938"/>
          <exon e_start="74812" e_stop="74675"/>
          <exon e_start="74585" e_stop="74434"/>
          <exon e_start="74338" e_stop="74225"/>
          <exon e_start="73338" e_stop="73246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATGGTATTTAGAAATGATTTCATCTTCTTTTTCTTAGTCTGTCTTGCTTGTTAGCTCAAACTTGATTCTTCAAGTATTATCATAATCTGCTGTATTAACTCTAGCCTTTCCCGTGGACATTAAAATAGGTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTTAAGAAACAGTTTACTAAACTTTCAACCAATCCGAGTACGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAGGTATGCCTATCTTATCAGGGTTCGTTACGCCTTCACGGTGCTTTTTTCAGTAGAATAAGTTCTTATGCTGATCATTTTACCAAAATCAGGTTAGGGTAATTGATGATGACATTCCATTGGCACAATTTGCTGTTGCTTTTCAAGGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGGGTGAGTGTATCACTAGTTCTTTTACAATTTATGTCATCGCAAGCATGTCAATGGATCTGTCTCATGTTTTTATGGGACTTCCTAATCATTTGCAGCTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAGCCATGATGTCTTTTTAACACCAACTATAAGGATACTGGTTTGTTCCGGCGTGGTATGCTGTTGCAAAAGGTACAAATCTTTAACACCTAAGAGTTCCTTCTACCTGGAGAGAATGTAGTATGATGATGCATTACCTTATTTTCTTCGCATTTTCTTCCATCAAATAAAATTTGTTTTGTTTTTCTTTTTTAATGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGACAGAGATAGATAGATAGAGAGAGAGAGAGAGTCTGAGAGGGGTGGATCTGTTGGTTAGCTGAACAGCTGCTATAAATGCAAGCTCTTGCTCGGCTGATTGGAGTATTAGAGTTTGATGTAAAGGTTTTAATGCACCACATCTTCTATCGTGGGGTTTATGTAAAATGTACGTTTTATCCTTCAGCTTGTTTTTGTTTTCATTATGATTAAAATGTAGTCTAGATTCTTGAATATGCTTAAAAAGTATTCTAAGTGTTTATTGGTTGTATATTGAATGCGGAGTGAAGTAGTTCTTTTTCAATGTCATCTACTGCTCATGTTTTGGATAGATGTAGTTCATATATTATTAGACAAGGTGTTACTCATCTGCTTGGATTTTTTGAGATATTGTGGTTAGTGTAAACTGAGTAATTTTATTTATTTGTTCTTAAAAGAAGCAGATCTTTTCTCTAATGACCAAAAAAAGACGGTTAGGTGTTGGTATTGTGACCCTTTTGACTGGCATGTGGTTGTAAATAATTCTACTATATATTAGGCAAGGTAGTTCTTATCTTCTTGGATTTTTTGAGATAATTTGGTTAGTAAAGTGAGCAATTTTTTTATTTGTTCTTAAAAGAAACATTTTTTTTCTCTAAAGACAAAATTAATATGATTAGGTGTTGTATTACCATCCTTTTTATGGTTGTGAATAATCCTTGTTTTATCTTAAATGAATTCTTAATGTGCAGCCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGC</genome_strand>
        <mrna_strand>TTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATG.............................................................................................................................GTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTTAAGAAACAGTTTACTAAACTTTCAACCAATCCGAGTACGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAG.........................................................................................GTTAGGGTAATTGATGATGACATTCCATTGGCACAATTTGCTGTTGCTTTTCAAGGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGG...............................................................................................CTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAG-CATGATGTC-TTTTAACACCAACTATAAGGATACTGGTTTGTT-CGGCGT-GTATGCTGTTGC-AAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214829" ref_strand="+" ref_description="SGN-E214829 [cLEC-78-A11]">
      <seq>acatttgaatgcatatacttccagggagcaaacagcatactatgctaaagtgttggataatgacgtccctgtagctttggatattttggctgatatacttcagaattctaagttcgaagagaaaaagattgaacgtgaacgtgatgtcatcctcagggagatggaggaggtcgaaggtcaaacagaggaagtcatctttgaccacttgcattcaactgcattccagtactcacctttgggtaggactattcttggacctgcccagaatataaagacaatcaccagaagtcatctgaaggactacatatcaacacattataccgctcccagaatggtaattgttgcttctgggcctgttaaacatgaagaatttgttgagcaagttaagaaacagtttactaaactttcaaccaatccgagtacggcctcagaattggttgccagagaaccagcaatttttacaggttcagaggttagggtaattgatgatgacattccattggcacaatttgctgttgcttttcaaggggcaccgtggactgatccagatgccattccactgatggtaatgcaatccatgctgggcacttggaataaaaatgccggaggagggaaacacatgggctccgatctggcacaaagtgttggcattaatgaacttgctgagagcatgatgtcttttaacaccaactataaggatactggtttgttcggcgtgtatgctgttgcaaagcctgatttgttgagtgatttgtcctactgcattatgcgcgagataagcgaattgtgctaccgggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76395" stop="72972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76095" g_stop="75927" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75926" i_stop="75103" i_length="824">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75102" g_stop="74938" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="334" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74937" i_stop="74813" i_length="125">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74812" g_stop="74675" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="472" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74674" i_stop="74586" i_length="89">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74585" g_stop="74434" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="624" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74433" i_stop="74339" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74338" g_stop="74225" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="733" r_length="109" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74224" i_stop="73339" i_length="886">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.973" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73338" g_stop="73272" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="800" r_length="67" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E214829" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76095" e_stop="75927"/>
          <exon e_start="75102" e_stop="74938"/>
          <exon e_start="74812" e_stop="74675"/>
          <exon e_start="74585" e_stop="74434"/>
          <exon e_start="74338" e_stop="74225"/>
          <exon e_start="73338" e_stop="73272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAGGTGCACTTTTTTTCTCTATTCTTTGATCTCTGAATATCAAGTTTGCTGTTTTTTCGATCTTTGTCAATGAGCTGCAATAACCCTACGTTATATTCTACTAGTCTCTGCATGCACTTGAAGCTTAACTAGTAAGCTGGTCACTAAAAACTAATTGGCATATTCATGTCAATTGACTAGTTTTACACTGACCGCCAACCTTGCAACCCTCATTACCCTCACGTAGGGTAAGAACTTGCTCTAACCCCAGTTCTGAAATTCAAGATCACTTGCGTTCTTGTTGAGTTCCCTGGATGCTAACAGGTTTTAACTTTACTGTTTCTTCGTTTTTCTTTTACTTCCATTTAAAATTACCTCTAGCTTCTTCAGTTTTATGAAAGTATACAGTCCATAGTATTTGAGTACTGTTGCAGAGAACTTTCAAAAGTAAATCTAATTGTATTATTTAGATTCAAAGAAATATCTGAATCCAATGAAACATAGGTAGATGTTGAAATGGTTTACTGATTAATATCCTAAGATTTTATTGAGGATTATTGTGCTTCAGGGAGTTGCCCTTGTTGATACAATGTAGTATTAAGTACTAACCGCTATGTATCCTCATTATTTGAGAGATTAAGAGCCATAATGAAGGAAATGAAATGGCCGTGCATTAAGTTTGTGATTGACCTTACAAAGAGAAGACGTTCCTCTCTAGAGAAACAGAAGAGAGGGAACTCCACACAATCCAAAAAGTTACTCCTGTAGTGAGCTTATGAAACCTATCATGCTGCCTGTATCATATACAATCTGAAAATTAGCAATCCATTATAACTATCTGTTTGCAGGTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATGGTATTTAGAAATGATTTCATCTTCTTTTTCTTAGTCTGTCTTGCTTGTTAGCTCAAACTTGATTCTTCAAGTATTATCATAATCTGCTGTATTAACTCTAGCCTTTCCCGTGGACATTAAAATAGGTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTTAAGAAACAGTTTACTAAACTTTCAACCAATCCGAGTACGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAGGTATGCCTATCTTATCAGGGTTCGTTACGCCTTCACGGTGCTTTTTTCAGTAGAATAAGTTCTTATGCTGATCATTTTACCAAAATCAGGTTAGGGTAATTGATGATGACATTCCATTGGCACAATTTGCTGTTGCTTTTCAAGGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGGGTGAGTGTATCACTAGTTCTTTTACAATTTATGTCATCGCAAGCATGTCAATGGATCTGTCTCATGTTTTTATGGGACTTCCTAATCATTTGCAGCTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAGCCATGATGTCTTTTTAACACCAACTATAAGGATACTGGTTTGTTCCGGCGTGGTATGCTGTTGCAAAAGGTACAAATCTTTAACACCTAAGAGTTCCTTCTACCTGGAGAGAATGTAGTATGATGATGCATTACCTTATTTTCTTCGCATTTTCTTCCATCAAATAAAATTTGTTTTGTTTTTCTTTTTTAATGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGACAGAGATAGATAGATAGAGAGAGAGAGAGAGTCTGAGAGGGGTGGATCTGTTGGTTAGCTGAACAGCTGCTATAAATGCAAGCTCTTGCTCGGCTGATTGGAGTATTAGAGTTTGATGTAAAGGTTTTAATGCACCACATCTTCTATCGTGGGGTTTATGTAAAATGTACGTTTTATCCTTCAGCTTGTTTTTGTTTTCATTATGATTAAAATGTAGTCTAGATTCTTGAATATGCTTAAAAAGTATTCTAAGTGTTTATTGGTTGTATATTGAATGCGGAGTGAAGTAGTTCTTTTTCAATGTCATCTACTGCTCATGTTTTGGATAGATGTAGTTCATATATTATTAGACAAGGTGTTACTCATCTGCTTGGATTTTTTGAGATATTGTGGTTAGTGTAAACTGAGTAATTTTATTTATTTGTTCTTAAAAGAAGCAGATCTTTTCTCTAATGACCAAAAAAAGACGGTTAGGTGTTGGTATTGTGACCCTTTTGACTGGCATGTGGTTGTAAATAATTCTACTATATATTAGGCAAGGTAGTTCTTATCTTCTTGGATTTTTTGAGATAATTTGGTTAGTAAAGTGAGCAATTTTTTTATTTGTTCTTAAAAGAAACATTTTTTTTCTCTAAAGACAAAATTAATATGATTAGGTGTTGTATTACCATCCTTTTTATGGTTGTGAATAATCCTTGTTTTATCTTAAATGAATTCTTAATGTGCAGCCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTT</genome_strand>
        <mrna_strand>ACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATG.............................................................................................................................GTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTTAAGAAACAGTTTACTAAACTTTCAACCAATCCGAGTACGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAG.........................................................................................GTTAGGGTAATTGATGATGACATTCCATTGGCACAATTTGCTGTTGCTTTTCAAGGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGG...............................................................................................CTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAG-CATGATGTC-TTTTAACACCAACTATAAGGATACTGGTTTGTT-CGGCGT-GTATGCTGTTGC-AAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATTTGTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCGAATTGTGCTACCGGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275049" ref_strand="+" ref_description="SGN-E275049 [cLEN-9-A1]">
      <seq>ttggacctgcccagaatataaagacaatcaccagaagtcatctgaaggactacatatcaacacattataccgctcccagaatggtaattgttgcttctgggcctgttaaacatgaagaatttgttgagcaagttaagaaacagtttactaaactttcaaccaatccgagtacggcctcagaattggttgccagagaaccagcaatttttacaggttcataggttagggtaattgatgatgacattccattggcacaatttgctgttgcttttcaaggggcaccgtggactgatccagatgccattccactgatggtaatgcaatccatgctgggcacttggaataaaaatgccggaggagggaaacacatgggctccgatctggcacaaagtgttggcattaatgaacttgctgagagcatgatgtcttttaacaccaactataaggatactggtttgttcggcgtgtatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="75320" stop="73935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75020" g_stop="74938" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74937" i_stop="74813" i_length="125">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74812" g_stop="74675" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="221" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74674" i_stop="74586" i_length="89">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74585" g_stop="74434" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="373" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74433" i_stop="74339" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74338" g_stop="74235" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="473" r_length="100" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E275049" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75020" e_stop="74938"/>
          <exon e_start="74812" e_stop="74675"/>
          <exon e_start="74585" e_stop="74434"/>
          <exon e_start="74338" e_stop="74235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATGGTATTTAGAAATGATTTCATCTTCTTTTTCTTAGTCTGTCTTGCTTGTTAGCTCAAACTTGATTCTTCAAGTATTATCATAATCTGCTGTATTAACTCTAGCCTTTCCCGTGGACATTAAAATAGGTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTTAAGAAACAGTTTACTAAACTTTCAACCAATCCGAGTACGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAGGTATGCCTATCTTATCAGGGTTCGTTACGCCTTCACGGTGCTTTTTTCAGTAGAATAAGTTCTTATGCTGATCATTTTACCAAAATCAGGTTAGGGTAATTGATGATGACATTCCATTGGCACAATTTGCTGTTGCTTTTCAAGGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGGGTGAGTGTATCACTAGTTCTTTTACAATTTATGTCATCGCAAGCATGTCAATGGATCTGTCTCATGTTTTTATGGGACTTCCTAATCATTTGCAGCTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAGCCATGATGTCTTTTTAACACCAACTATAAGGATACTGGTTTGTTCCGGCGTGGTATGCT</genome_strand>
        <mrna_strand>TTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATG.............................................................................................................................GTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTTAAGAAACAGTTTACTAAACTTTCAACCAATCCGAGTACGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCATAG.........................................................................................GTTAGGGTAATTGATGATGACATTCCATTGGCACAATTTGCTGTTGCTTTTCAAGGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGG...............................................................................................CTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAG-CATGATGTC-TTTTAACACCAACTATAAGGATACTGGTTTGTT-CGGCGT-GTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275053" ref_strand="+" ref_description="SGN-E275053 [cLEN-9-C1]">
      <seq>ttggacctgcccagaatataaagacaattaccagaagtcatctgaaggactacatatcaacacattataccgctcccagaatggtaattgttgcttatgggcctgttaaacatgaagaatttgttgagcaagttaagaaacagtttactaaactttcaaccaatccgagtacggactcagaattggttgccagagaaccagcaatttttacaggttcagaggatagggtaattgatgatgacattccattggcacaatttgctgttgcttttcaaggggcaccgtggactgatccaaatgccattccactgatggtaatgcaattcatgctgggcacttggaataaaaatgccggaggagggaaacacatgggctccgaactggcacaaagtgttggcattaatgaacttgctgatagcatgatgtcttttaacaccaactataaggatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="75320" stop="73957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75020" g_stop="74938" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74937" i_stop="74813" i_length="125">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74812" g_stop="74675" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="221" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74674" i_stop="74586" i_length="89">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74585" g_stop="74434" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="373" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74433" i_stop="74339" i_length="95">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74338" g_stop="74257" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="453" r_length="80" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E275053" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75020" e_stop="74938"/>
          <exon e_start="74812" e_stop="74675"/>
          <exon e_start="74585" e_stop="74434"/>
          <exon e_start="74338" e_stop="74257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATGGTATTTAGAAATGATTTCATCTTCTTTTTCTTAGTCTGTCTTGCTTGTTAGCTCAAACTTGATTCTTCAAGTATTATCATAATCTGCTGTATTAACTCTAGCCTTTCCCGTGGACATTAAAATAGGTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTTAAGAAACAGTTTACTAAACTTTCAACCAATCCGAGTACGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAGGTATGCCTATCTTATCAGGGTTCGTTACGCCTTCACGGTGCTTTTTTCAGTAGAATAAGTTCTTATGCTGATCATTTTACCAAAATCAGGTTAGGGTAATTGATGATGACATTCCATTGGCACAATTTGCTGTTGCTTTTCAAGGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGGGTGAGTGTATCACTAGTTCTTTTACAATTTATGTCATCGCAAGCATGTCAATGGATCTGTCTCATGTTTTTATGGGACTTCCTAATCATTTGCAGCTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAGCCATGATGTCTTTTTAACACCAACTATAAGGATACTG</genome_strand>
        <mrna_strand>TTGGACCTGCCCAGAATATAAAGACAATTACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATG.............................................................................................................................GTAATTGTTGCTTATGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTTAAGAAACAGTTTACTAAACTTTCAACCAATCCGAGTACGGACTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAG.........................................................................................GATAGGGTAATTGATGATGACATTCCATTGGCACAATTTGCTGTTGCTTTTCAAGGGGCACCGTGGACTGATCCAAATGCCATTCCACTGATGGTAATGCAATTCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGG...............................................................................................CTCCGAACTGGCACAAAGTGTTGGCATTAATGAACTTGCTGATAG-CATGATGTC-TTTTAACACCAACTATAAGGATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270544" ref_strand="+" ref_description="SGN-E270544 [cLEN-1-O9]">
      <seq>ttggacctgcccagaatataaagacaatcaccagaagtcatctgaaggactacatatcaacacattataccgctcccagaatggtaattgttgcttctgggcctgttaaacatgaagaatttgttgagcaagttaagaaacagtttactaaactttcaaccaatccgagtacggcctcagaattggttgccagagaaccagcaatttttacaggttcagaggttagggtaattgatgatgacattccattggcacaatttgctgttgcttttcaaggggcaccgtggactgatccagatgccattccactgatggtaatgcaatccatgctgggcacttggaataaaaatgccggaggagggaaacacatgggctccgatctggcacaaagtgttggcattaatgaacttgctgagagcatgatgtcttttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="75320" stop="73976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75020" g_stop="74938" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74937" i_stop="74813" i_length="125">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74812" g_stop="74675" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="221" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74674" i_stop="74586" i_length="89">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74585" g_stop="74434" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="373" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74433" i_stop="74339" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74338" g_stop="74276" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="434" r_length="61" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E270544" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75020" e_stop="74938"/>
          <exon e_start="74812" e_stop="74675"/>
          <exon e_start="74585" e_stop="74434"/>
          <exon e_start="74338" e_stop="74276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATGGTATTTAGAAATGATTTCATCTTCTTTTTCTTAGTCTGTCTTGCTTGTTAGCTCAAACTTGATTCTTCAAGTATTATCATAATCTGCTGTATTAACTCTAGCCTTTCCCGTGGACATTAAAATAGGTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTTAAGAAACAGTTTACTAAACTTTCAACCAATCCGAGTACGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAGGTATGCCTATCTTATCAGGGTTCGTTACGCCTTCACGGTGCTTTTTTCAGTAGAATAAGTTCTTATGCTGATCATTTTACCAAAATCAGGTTAGGGTAATTGATGATGACATTCCATTGGCACAATTTGCTGTTGCTTTTCAAGGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGGGTGAGTGTATCACTAGTTCTTTTACAATTTATGTCATCGCAAGCATGTCAATGGATCTGTCTCATGTTTTTATGGGACTTCCTAATCATTTGCAGCTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAGCCATGATGTCTTTTTAAC</genome_strand>
        <mrna_strand>TTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATG.............................................................................................................................GTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTTAAGAAACAGTTTACTAAACTTTCAACCAATCCGAGTACGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAG.........................................................................................GTTAGGGTAATTGATGATGACATTCCATTGGCACAATTTGCTGTTGCTTTTCAAGGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGG...............................................................................................CTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAG-CATGATGTC-TTTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273080" ref_strand="+" ref_description="SGN-E273080 [cLEM-24-C5]">
      <seq>aagattgaaccgtgaacgtgatgtcatcctcagggagatggaggaggtcgaaggtcaaaccagaggaagtcatctttgaccacttgcattcaactgcattccagtactcacctttgggtaggactattcttggacctgcccagaatataaagacaatcaccagaagtcatctgaaggactacatatcaacacattatacccgctcccagaatggtaattgttgcttctgggcctgttaaacatgaagaatttgttgagcaagttaagaaacagtttactaaactttcaaccaatccgagtaccggcctcagaattggttgccagagaaccagcaatttttacaggttcagaggttagggtaattgatgatgacattccattggcacaatttgctgttgcttttcaaggggcaccgtggactgatccagatgccattccactgatggtaatgcaatccatgctgggcacttggaataaaaatgccggaggagggaaacacatgggctccgatctggcacaaagtgttggcattaatgaacttgctgagagcatgatgtctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76271" stop="73980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75971" g_stop="75927" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75926" i_stop="75103" i_length="824">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75102" g_stop="74938" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="213" r_length="167" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74937" i_stop="74813" i_length="125">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74812" g_stop="74675" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="352" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74674" i_stop="74586" i_length="89">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74585" g_stop="74434" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="504" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74433" i_stop="74339" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74338" g_stop="74280" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="562" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E273080" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75971" e_stop="75927"/>
          <exon e_start="75102" e_stop="74938"/>
          <exon e_start="74812" e_stop="74675"/>
          <exon e_start="74585" e_stop="74434"/>
          <exon e_start="74338" e_stop="74280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTGAA-CGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAGGTGCACTTTTTTTCTCTATTCTTTGATCTCTGAATATCAAGTTTGCTGTTTTTTCGATCTTTGTCAATGAGCTGCAATAACCCTACGTTATATTCTACTAGTCTCTGCATGCACTTGAAGCTTAACTAGTAAGCTGGTCACTAAAAACTAATTGGCATATTCATGTCAATTGACTAGTTTTACACTGACCGCCAACCTTGCAACCCTCATTACCCTCACGTAGGGTAAGAACTTGCTCTAACCCCAGTTCTGAAATTCAAGATCACTTGCGTTCTTGTTGAGTTCCCTGGATGCTAACAGGTTTTAACTTTACTGTTTCTTCGTTTTTCTTTTACTTCCATTTAAAATTACCTCTAGCTTCTTCAGTTTTATGAAAGTATACAGTCCATAGTATTTGAGTACTGTTGCAGAGAACTTTCAAAAGTAAATCTAATTGTATTATTTAGATTCAAAGAAATATCTGAATCCAATGAAACATAGGTAGATGTTGAAATGGTTTACTGATTAATATCCTAAGATTTTATTGAGGATTATTGTGCTTCAGGGAGTTGCCCTTGTTGATACAATGTAGTATTAAGTACTAACCGCTATGTATCCTCATTATTTGAGAGATTAAGAGCCATAATGAAGGAAATGAAATGGCCGTGCATTAAGTTTGTGATTGACCTTACAAAGAGAAGACGTTCCTCTCTAGAGAAACAGAAGAGAGGGAACTCCACACAATCCAAAAAGTTACTCCTGTAGTGAGCTTATGAAACCTATCATGCTGCCTGTATCATATACAATCTGAAAATTAGCAATCCATTATAACTATCTGTTTGCAGGTCGAAGGTCAAA-CAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATA-CCGCTCCCAGAATGGTATTTAGAAATGATTTCATCTTCTTTTTCTTAGTCTGTCTTGCTTGTTAGCTCAAACTTGATTCTTCAAGTATTATCATAATCTGCTGTATTAACTCTAGCCTTTCCCGTGGACATTAAAATAGGTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTTAAGAAACAGTTTACTAAACTTTCAACCAATCCGAGTA-CGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAGGTATGCCTATCTTATCAGGGTTCGTTACGCCTTCACGGTGCTTTTTTCAGTAGAATAAGTTCTTATGCTGATCATTTTACCAAAATCAGGTTAGGGTAATTGATGATGACATTCCATTGGCACAATTTGCTGTTGCTTTTCAAGGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGGGTGAGTGTATCACTAGTTCTTTTACAATTTATGTCATCGCAAGCATGTCAATGGATCTGTCTCATGTTTTTATGGGACTTCCTAATCATTTGCAGCTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAGCCATGATGTCTTTT</genome_strand>
        <mrna_strand>AAGATTGAACCGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGTCAAACCAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCCGCTCCCAGAATG.............................................................................................................................GTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTTAAGAAACAGTTTACTAAACTTTCAACCAATCCGAGTACCGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAG.........................................................................................GTTAGGGTAATTGATGATGACATTCCATTGGCACAATTTGCTGTTGCTTTTCAAGGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGG...............................................................................................CTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAG-CATGATGTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E251042" ref_strand="+" ref_description="SGN-E251042 [cLEG-17-N15]">
      <seq>gtggataatgacgtccctgtagctttggatattttggctgatatacttcagaattctaagttcgaagagaaaaagattgaacgtgaacgtgatgtcatcctcagggagatggaggaggtcgaaggtcaaacagaggaagtcatctttgaccacttgcattcaactgcattccagtactcacctttgggtaggactattcttggacctgcccagaatataaagacaatcaccagaagtcatctgaaggactacatatcaacacattataccgctcccagaatggtaattgttgcttctgggcctgttaaacatgaagaatttgttgagcaagttaagaaacagtttactaaactttcaaccaatccgagtacggcctcagaattggttgccagagaaccagcaatttttacaggttcagaggttagggtaattgatgatgacattccattggcacaatttgctgttgcttttcaaggggcaccgtggactgatccagatgccattccactgatggtaatgcaatccatgctgggcactgggaataaaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76342" stop="74155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76043" g_stop="75927" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75926" i_stop="75103" i_length="824">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75102" g_stop="74938" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="282" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74937" i_stop="74813" i_length="125">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74812" g_stop="74675" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="420" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74674" i_stop="74586" i_length="89">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74585" g_stop="74455" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="551" r_length="131" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E251042" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76043" e_stop="75927"/>
          <exon e_start="75102" e_stop="74938"/>
          <exon e_start="74812" e_stop="74675"/>
          <exon e_start="74585" e_stop="74455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAGGTGCACTTTTTTTCTCTATTCTTTGATCTCTGAATATCAAGTTTGCTGTTTTTTCGATCTTTGTCAATGAGCTGCAATAACCCTACGTTATATTCTACTAGTCTCTGCATGCACTTGAAGCTTAACTAGTAAGCTGGTCACTAAAAACTAATTGGCATATTCATGTCAATTGACTAGTTTTACACTGACCGCCAACCTTGCAACCCTCATTACCCTCACGTAGGGTAAGAACTTGCTCTAACCCCAGTTCTGAAATTCAAGATCACTTGCGTTCTTGTTGAGTTCCCTGGATGCTAACAGGTTTTAACTTTACTGTTTCTTCGTTTTTCTTTTACTTCCATTTAAAATTACCTCTAGCTTCTTCAGTTTTATGAAAGTATACAGTCCATAGTATTTGAGTACTGTTGCAGAGAACTTTCAAAAGTAAATCTAATTGTATTATTTAGATTCAAAGAAATATCTGAATCCAATGAAACATAGGTAGATGTTGAAATGGTTTACTGATTAATATCCTAAGATTTTATTGAGGATTATTGTGCTTCAGGGAGTTGCCCTTGTTGATACAATGTAGTATTAAGTACTAACCGCTATGTATCCTCATTATTTGAGAGATTAAGAGCCATAATGAAGGAAATGAAATGGCCGTGCATTAAGTTTGTGATTGACCTTACAAAGAGAAGACGTTCCTCTCTAGAGAAACAGAAGAGAGGGAACTCCACACAATCCAAAAAGTTACTCCTGTAGTGAGCTTATGAAACCTATCATGCTGCCTGTATCATATACAATCTGAAAATTAGCAATCCATTATAACTATCTGTTTGCAGGTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATGGTATTTAGAAATGATTTCATCTTCTTTTTCTTAGTCTGTCTTGCTTGTTAGCTCAAACTTGATTCTTCAAGTATTATCATAATCTGCTGTATTAACTCTAGCCTTTCCCGTGGACATTAAAATAGGTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTTAAGAAACAGTTTACTAAACTTTCAACCAATCCGAGTACGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAGGTATGCCTATCTTATCAGGGTTCGTTACGCCTTCACGGTGCTTTTTTCAGTAGAATAAGTTCTTATGCTGATCATTTTACCAAAATCAGGTTAGGGTAATTGATGATGACATTCCATTGGCACAATTTGCTGTTGCTTTTCAAGGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGC</genome_strand>
        <mrna_strand>GTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATG.............................................................................................................................GTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTTAAGAAACAGTTTACTAAACTTTCAACCAATCCGAGTACGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAG.........................................................................................GTTAGGGTAATTGATGATGACATTCCATTGGCACAATTTGCTGTTGCTTTTCAAGGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTGGGAATAAAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250673" ref_strand="+" ref_description="SGN-E250673 [cLEG-7-J12]">
      <seq>accgttggggtattcattgatgcagggtcaaggtttgagaccgatgagactaatggaacagctcattttcttgagcatatgatctttaagggtactgaaaagaggacttcttgggaaatggaggaggagattgagaatatgggtggacatttgaatgcatatacttccagggagcaaacagcatactatgctaaagtgttggataatgacgtccctgtagctttggatattttggctgatatacttcagaattctaagttcgaagagaaaaagattgaacgtgaacgtgatgtcatcctcagggagatggaggaggtcgaaggtcaaacagaggaagtcatctttgaccacttgcattcaactgcattccagtactcacctttgggtaggactattcttggacctgcccagaatataaagacaatcaccagaagtcatctgaaggactacatatcaacacattataccgctcccagaatggtaattgttgcttctgggcctgttaaacatgaagaatttgttgagcaagttaagaaacagtttactaaactttcaaccaatccgagtacggcctcagaattggttgccagagaaccagcaatttttacaggttcagaggttagggtaattgatgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76541" stop="74265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76241" g_stop="75927" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75926" i_stop="75103" i_length="824">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75102" g_stop="74938" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="480" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74937" i_stop="74813" i_length="125">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74812" g_stop="74675" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="618" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74674" i_stop="74586" i_length="89">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74585" g_stop="74565" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="639" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E250673" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76241" e_stop="75927"/>
          <exon e_start="75102" e_stop="74938"/>
          <exon e_start="74812" e_stop="74675"/>
          <exon e_start="74585" e_stop="74565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAGGTGCACTTTTTTTCTCTATTCTTTGATCTCTGAATATCAAGTTTGCTGTTTTTTCGATCTTTGTCAATGAGCTGCAATAACCCTACGTTATATTCTACTAGTCTCTGCATGCACTTGAAGCTTAACTAGTAAGCTGGTCACTAAAAACTAATTGGCATATTCATGTCAATTGACTAGTTTTACACTGACCGCCAACCTTGCAACCCTCATTACCCTCACGTAGGGTAAGAACTTGCTCTAACCCCAGTTCTGAAATTCAAGATCACTTGCGTTCTTGTTGAGTTCCCTGGATGCTAACAGGTTTTAACTTTACTGTTTCTTCGTTTTTCTTTTACTTCCATTTAAAATTACCTCTAGCTTCTTCAGTTTTATGAAAGTATACAGTCCATAGTATTTGAGTACTGTTGCAGAGAACTTTCAAAAGTAAATCTAATTGTATTATTTAGATTCAAAGAAATATCTGAATCCAATGAAACATAGGTAGATGTTGAAATGGTTTACTGATTAATATCCTAAGATTTTATTGAGGATTATTGTGCTTCAGGGAGTTGCCCTTGTTGATACAATGTAGTATTAAGTACTAACCGCTATGTATCCTCATTATTTGAGAGATTAAGAGCCATAATGAAGGAAATGAAATGGCCGTGCATTAAGTTTGTGATTGACCTTACAAAGAGAAGACGTTCCTCTCTAGAGAAACAGAAGAGAGGGAACTCCACACAATCCAAAAAGTTACTCCTGTAGTGAGCTTATGAAACCTATCATGCTGCCTGTATCATATACAATCTGAAAATTAGCAATCCATTATAACTATCTGTTTGCAGGTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATGGTATTTAGAAATGATTTCATCTTCTTTTTCTTAGTCTGTCTTGCTTGTTAGCTCAAACTTGATTCTTCAAGTATTATCATAATCTGCTGTATTAACTCTAGCCTTTCCCGTGGACATTAAAATAGGTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTTAAGAAACAGTTTACTAAACTTTCAACCAATCCGAGTACGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAGGTATGCCTATCTTATCAGGGTTCGTTACGCCTTCACGGTGCTTTTTTCAGTAGAATAAGTTCTTATGCTGATCATTTTACCAAAATCAGGTTAGGGTAATTGATGATGAC</genome_strand>
        <mrna_strand>ACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATG.............................................................................................................................GTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTTAAGAAACAGTTTACTAAACTTTCAACCAATCCGAGTACGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAG.........................................................................................GTTAGGGTAATTGATGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200762" ref_strand="+" ref_description="SGN-E200762 [cLEC-9-C16]">
      <seq>tgacgtccctgtagctttggatattttggctgatatacttcagaattctaagttcgaagagaaaaagattgaacgtgaacgtgatgtcatcctcagggagatggaggaggtcgaaggtcaaacagaggaagtcatctttgaccacttgcattcaactgcattccagtactcacctttgggtaggactattcttggacctgcccagaatataaagacaatcaccagaagtcatctgaaggactacatatcaacacattataccgctcccaaatggtaattgttgcttctgggcctgttaaacatgaagaatttgttgagcaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76335" stop="74462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76035" g_stop="75927" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75926" i_stop="75103" i_length="824">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75102" g_stop="74938" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="273" r_length="164" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74937" i_stop="74813" i_length="125">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74812" g_stop="74762" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="324" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E200762" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76035" e_stop="75927"/>
          <exon e_start="75102" e_stop="74938"/>
          <exon e_start="74812" e_stop="74762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAGGTGCACTTTTTTTCTCTATTCTTTGATCTCTGAATATCAAGTTTGCTGTTTTTTCGATCTTTGTCAATGAGCTGCAATAACCCTACGTTATATTCTACTAGTCTCTGCATGCACTTGAAGCTTAACTAGTAAGCTGGTCACTAAAAACTAATTGGCATATTCATGTCAATTGACTAGTTTTACACTGACCGCCAACCTTGCAACCCTCATTACCCTCACGTAGGGTAAGAACTTGCTCTAACCCCAGTTCTGAAATTCAAGATCACTTGCGTTCTTGTTGAGTTCCCTGGATGCTAACAGGTTTTAACTTTACTGTTTCTTCGTTTTTCTTTTACTTCCATTTAAAATTACCTCTAGCTTCTTCAGTTTTATGAAAGTATACAGTCCATAGTATTTGAGTACTGTTGCAGAGAACTTTCAAAAGTAAATCTAATTGTATTATTTAGATTCAAAGAAATATCTGAATCCAATGAAACATAGGTAGATGTTGAAATGGTTTACTGATTAATATCCTAAGATTTTATTGAGGATTATTGTGCTTCAGGGAGTTGCCCTTGTTGATACAATGTAGTATTAAGTACTAACCGCTATGTATCCTCATTATTTGAGAGATTAAGAGCCATAATGAAGGAAATGAAATGGCCGTGCATTAAGTTTGTGATTGACCTTACAAAGAGAAGACGTTCCTCTCTAGAGAAACAGAAGAGAGGGAACTCCACACAATCCAAAAAGTTACTCCTGTAGTGAGCTTATGAAACCTATCATGCTGCCTGTATCATATACAATCTGAAAATTAGCAATCCATTATAACTATCTGTTTGCAGGTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATGGTATTTAGAAATGATTTCATCTTCTTTTTCTTAGTCTGTCTTGCTTGTTAGCTCAAACTTGATTCTTCAAGTATTATCATAATCTGCTGTATTAACTCTAGCCTTTCCCGTGGACATTAAAATAGGTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTT</genome_strand>
        <mrna_strand>TGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCA-AATG.............................................................................................................................GTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698075" ref_strand="+" ref_description="SGN-E698075 [FA05AG03]">
      <seq>ggatcccccgggctgcaggcgagaatcctgatcctttattccttcagtacaactcgccacacccaactttagccgaccacacatcaatcctcagcttcccctctacgcgcgtgactacactaccatcgggcctgcgtgtggccacggagactaatctcgctgtcaagactgccaccgttggggtattcattgatgcagggtcaaggtttgagaccgatgagactaatggaacagctcattttcttgagcatatgatctttaagggtactgaaaagaggacttcttgggaaatggaggaggagattgagaatatgggtggacatttgaatgcatatacttccagggagcaaacagcatactatgctaaagtgttggataatgacgtccctgtagctttggatattttggctgatatacttcagaattctaagttcgaagagaaaaagattgaacgtgaacgtgatgtcatcctcagggagatggaggaggtcgaaggtcaaacagaggaagtcatctttgaccacttgcattcaactgcattccagtactcacctttgggtaggactattcttggacctgcccagaatataaagacaatcaccagaactcatctgaaggactacatatcaacacattataccgctccccgaatggtaattgttgcttctgggcctgttaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76677" stop="74482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76396" g_stop="75927" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="488" r_length="470" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75926" i_stop="75103" i_length="824">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75102" g_stop="74938" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="653" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74937" i_stop="74813" i_length="125">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74812" g_stop="74782" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="684" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E698075" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76396" e_stop="75927"/>
          <exon e_start="75102" e_stop="74938"/>
          <exon e_start="74812" e_stop="74782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAGGTGCACTTTTTTTCTCTATTCTTTGATCTCTGAATATCAAGTTTGCTGTTTTTTCGATCTTTGTCAATGAGCTGCAATAACCCTACGTTATATTCTACTAGTCTCTGCATGCACTTGAAGCTTAACTAGTAAGCTGGTCACTAAAAACTAATTGGCATATTCATGTCAATTGACTAGTTTTACACTGACCGCCAACCTTGCAACCCTCATTACCCTCACGTAGGGTAAGAACTTGCTCTAACCCCAGTTCTGAAATTCAAGATCACTTGCGTTCTTGTTGAGTTCCCTGGATGCTAACAGGTTTTAACTTTACTGTTTCTTCGTTTTTCTTTTACTTCCATTTAAAATTACCTCTAGCTTCTTCAGTTTTATGAAAGTATACAGTCCATAGTATTTGAGTACTGTTGCAGAGAACTTTCAAAAGTAAATCTAATTGTATTATTTAGATTCAAAGAAATATCTGAATCCAATGAAACATAGGTAGATGTTGAAATGGTTTACTGATTAATATCCTAAGATTTTATTGAGGATTATTGTGCTTCAGGGAGTTGCCCTTGTTGATACAATGTAGTATTAAGTACTAACCGCTATGTATCCTCATTATTTGAGAGATTAAGAGCCATAATGAAGGAAATGAAATGGCCGTGCATTAAGTTTGTGATTGACCTTACAAAGAGAAGACGTTCCTCTCTAGAGAAACAGAAGAGAGGGAACTCCACACAATCCAAAAAGTTACTCCTGTAGTGAGCTTATGAAACCTATCATGCTGCCTGTATCATATACAATCTGAAAATTAGCAATCCATTATAACTATCTGTTTGCAGGTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATGGTATTTAGAAATGATTTCATCTTCTTTTTCTTAGTCTGTCTTGCTTGTTAGCTCAAACTTGATTCTTCAAGTATTATCATAATCTGCTGTATTAACTCTAGCCTTTCCCGTGGACATTAAAATAGGTAATTGTTGCTTCTGGGCCTGTTAAACATG</genome_strand>
        <mrna_strand>GCGAGAATCCTGATCCTTTATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAACTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCCGAATG.............................................................................................................................GTAATTGTTGCTTCTGGGCCTGTTAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726479" ref_strand="+" ref_description="SGN-E726479 [LA11DG02]">
      <seq>aacaaaccctagcctaatttacaagccatagccatgacgatccggcagctcttaaccctagcccgccggtcccgaaacctatcctcatcccattcactgcggcgtctttcttcggcgtctgccgccgtcgccgccacatcctcctccgccccggccatcggtccgccacccccagatgcaatgatctacgatcgattggctgaagacgttaaacgaaagatcaagagactcgagaatcctgattcccgattccttcagtacaactcgccacacccaactttagccgaccacacatcaatcctcagcttcccctctacgcgcgtgactacactaccatcgggcctgcgtgtggccacggagactaatctcgctgtcaagactgccaccgttggggtattcattgatgcagggtcaaggtttgagaccgatgagactaatggaacagctcattttcttgagcatatgatctttaagggtactgaaaagaggacttcttgggaaatggaggaggagattgagaatatgggtggacatttgaatgcatatacttccagggagcaaacagcatactatgctaaagtgttggataatgacgtccctgtagctttggatattttggctgatatacttcagaattctaagttcgaagagaaaaagattgaacgtgaacgtgatgtcatcctcagggagatggaggaggtcgaaggtcaaacagaggaagtcatctttgaccacttgcattcaactgcattccagtactcacctttgggtaggactattcttggacctgcccagaatataaagacaatcaccagaagtcatctgaaagactacatatcaacacattataccgctcccagaatggtaattgttgcttctgggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76925" stop="74492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76625" g_stop="75927" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75926" i_stop="75103" i_length="824">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75102" g_stop="74938" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="864" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74937" i_stop="74813" i_length="125">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74812" g_stop="74792" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="865" r_stop="885" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E726479" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76625" e_stop="75927"/>
          <exon e_start="75102" e_stop="74938"/>
          <exon e_start="74812" e_stop="74792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAGGTGCACTTTTTTTCTCTATTCTTTGATCTCTGAATATCAAGTTTGCTGTTTTTTCGATCTTTGTCAATGAGCTGCAATAACCCTACGTTATATTCTACTAGTCTCTGCATGCACTTGAAGCTTAACTAGTAAGCTGGTCACTAAAAACTAATTGGCATATTCATGTCAATTGACTAGTTTTACACTGACCGCCAACCTTGCAACCCTCATTACCCTCACGTAGGGTAAGAACTTGCTCTAACCCCAGTTCTGAAATTCAAGATCACTTGCGTTCTTGTTGAGTTCCCTGGATGCTAACAGGTTTTAACTTTACTGTTTCTTCGTTTTTCTTTTACTTCCATTTAAAATTACCTCTAGCTTCTTCAGTTTTATGAAAGTATACAGTCCATAGTATTTGAGTACTGTTGCAGAGAACTTTCAAAAGTAAATCTAATTGTATTATTTAGATTCAAAGAAATATCTGAATCCAATGAAACATAGGTAGATGTTGAAATGGTTTACTGATTAATATCCTAAGATTTTATTGAGGATTATTGTGCTTCAGGGAGTTGCCCTTGTTGATACAATGTAGTATTAAGTACTAACCGCTATGTATCCTCATTATTTGAGAGATTAAGAGCCATAATGAAGGAAATGAAATGGCCGTGCATTAAGTTTGTGATTGACCTTACAAAGAGAAGACGTTCCTCTCTAGAGAAACAGAAGAGAGGGAACTCCACACAATCCAAAAAGTTACTCCTGTAGTGAGCTTATGAAACCTATCATGCTGCCTGTATCATATACAATCTGAAAATTAGCAATCCATTATAACTATCTGTTTGCAGGTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATGGTATTTAGAAATGATTTCATCTTCTTTTTCTTAGTCTGTCTTGCTTGTTAGCTCAAACTTGATTCTTCAAGTATTATCATAATCTGCTGTATTAACTCTAGCCTTTCCCGTGGACATTAAAATAGGTAATTGTTGCTTCTGGGCCT</genome_strand>
        <mrna_strand>AACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAAGACTACATATCAACACATTATACCGCTCCCAGAATG.............................................................................................................................GTAATTGTTGCTTCTGGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205477" ref_strand="+" ref_description="SGN-E205477 [cLEC-28-M13]">
      <seq>ggtattcattgatgcagggtcaaggtttgagaccgatgagactaatggaacagctcattttcttgagcatatgatctttaagggtactgaaaagaggacttcttgggaaatggaggaggagattgagaatatgggtggacatttgaatgcatatacttccagggagcaaacagcatactatgctaaagtgttggataatgacgtccctgtagctttggatattttggctgatatacttcagaattctaagttcgaagagaaaaagattgaacgtgaacgtgatgtcatcctcagggagatggaggaggtcgaaggtcaaacagaggaagtcatctttgaccacttgcattcaactgcattccagtactcacctttgggtaggactattcttggacctgcccagaatataaagacaatcaccagaagtcatctgaaggactacatatcaacacattataccgctcccaaaatggtaattgttgcttctgggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76533" stop="74492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76233" g_stop="75927" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75926" i_stop="75103" i_length="824">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75102" g_stop="74938" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="472" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74937" i_stop="74813" i_length="125">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74812" g_stop="74792" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="493" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E205477" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76233" e_stop="75927"/>
          <exon e_start="75102" e_stop="74938"/>
          <exon e_start="74812" e_stop="74792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAGGTGCACTTTTTTTCTCTATTCTTTGATCTCTGAATATCAAGTTTGCTGTTTTTTCGATCTTTGTCAATGAGCTGCAATAACCCTACGTTATATTCTACTAGTCTCTGCATGCACTTGAAGCTTAACTAGTAAGCTGGTCACTAAAAACTAATTGGCATATTCATGTCAATTGACTAGTTTTACACTGACCGCCAACCTTGCAACCCTCATTACCCTCACGTAGGGTAAGAACTTGCTCTAACCCCAGTTCTGAAATTCAAGATCACTTGCGTTCTTGTTGAGTTCCCTGGATGCTAACAGGTTTTAACTTTACTGTTTCTTCGTTTTTCTTTTACTTCCATTTAAAATTACCTCTAGCTTCTTCAGTTTTATGAAAGTATACAGTCCATAGTATTTGAGTACTGTTGCAGAGAACTTTCAAAAGTAAATCTAATTGTATTATTTAGATTCAAAGAAATATCTGAATCCAATGAAACATAGGTAGATGTTGAAATGGTTTACTGATTAATATCCTAAGATTTTATTGAGGATTATTGTGCTTCAGGGAGTTGCCCTTGTTGATACAATGTAGTATTAAGTACTAACCGCTATGTATCCTCATTATTTGAGAGATTAAGAGCCATAATGAAGGAAATGAAATGGCCGTGCATTAAGTTTGTGATTGACCTTACAAAGAGAAGACGTTCCTCTCTAGAGAAACAGAAGAGAGGGAACTCCACACAATCCAAAAAGTTACTCCTGTAGTGAGCTTATGAAACCTATCATGCTGCCTGTATCATATACAATCTGAAAATTAGCAATCCATTATAACTATCTGTTTGCAGGTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATGGTATTTAGAAATGATTTCATCTTCTTTTTCTTAGTCTGTCTTGCTTGTTAGCTCAAACTTGATTCTTCAAGTATTATCATAATCTGCTGTATTAACTCTAGCCTTTCCCGTGGACATTAAAATAGGTAATTGTTGCTTCTGGGCCT</genome_strand>
        <mrna_strand>GGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAAAATG.............................................................................................................................GTAATTGTTGCTTCTGGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726495" ref_strand="+" ref_description="SGN-E726495 [LA11DH08]">
      <seq>ctttctctgtataggaaccacaacaaaccctagcctaatttacaagccatagccatgacgatccggcagctcttaaccctagcccgccggtcccgaaacctatcctcatcccattcactgcggcgtctttcttcggcgtctgccgccgtcgccgccacatcctcctccgccccggccatcggtccgccacccccagatgcaatgatctacgatcgattggctgaagacgttaaacgaaagatcaagagactcgagaatcctgattcccgattccttcagtacaactcgccacacccaactttagccgaccacacatcaatcctcagcttcccctctacgcgcgtgactacactaccatcgggcctgcgtgtggccacggagactaatctcgctgtcaagactgccaccgttggggtattcattgatgcagggtcaaggtttgagaccgatgagactaatggaacagctcattttcttgagcatatgatctttaagggtactgaaaagaggacttcttgggaaatggaggaggagattgagaatatgggtggacatttgaatgcatatacttccagggagcaaacagcatactatgctaaagtgttggataatgacgtccctgtagctttggatattttggctgatatacttcagaattctaagttcgaagagaaaaagattgaacgtgaacgtgatgtcatcctcagggagatggaggaggtcgaaggtcaaacagaggaagtcatctttgaccacttgcattcaactgcattccagtactcacctttgggtaggactattcttggacctgcccagaatataaagacaatcaccagaagtcatctgaaggactacatatcaacacattataccgctcccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76946" stop="74640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76646" g_stop="75927" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75926" i_stop="75103" i_length="824">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75102" g_stop="74941" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="882" r_length="162" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E726495" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76646" e_stop="75927"/>
          <exon e_start="75102" e_stop="74941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTGTATAGGAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAGGTGCACTTTTTTTCTCTATTCTTTGATCTCTGAATATCAAGTTTGCTGTTTTTTCGATCTTTGTCAATGAGCTGCAATAACCCTACGTTATATTCTACTAGTCTCTGCATGCACTTGAAGCTTAACTAGTAAGCTGGTCACTAAAAACTAATTGGCATATTCATGTCAATTGACTAGTTTTACACTGACCGCCAACCTTGCAACCCTCATTACCCTCACGTAGGGTAAGAACTTGCTCTAACCCCAGTTCTGAAATTCAAGATCACTTGCGTTCTTGTTGAGTTCCCTGGATGCTAACAGGTTTTAACTTTACTGTTTCTTCGTTTTTCTTTTACTTCCATTTAAAATTACCTCTAGCTTCTTCAGTTTTATGAAAGTATACAGTCCATAGTATTTGAGTACTGTTGCAGAGAACTTTCAAAAGTAAATCTAATTGTATTATTTAGATTCAAAGAAATATCTGAATCCAATGAAACATAGGTAGATGTTGAAATGGTTTACTGATTAATATCCTAAGATTTTATTGAGGATTATTGTGCTTCAGGGAGTTGCCCTTGTTGATACAATGTAGTATTAAGTACTAACCGCTATGTATCCTCATTATTTGAGAGATTAAGAGCCATAATGAAGGAAATGAAATGGCCGTGCATTAAGTTTGTGATTGACCTTACAAAGAGAAGACGTTCCTCTCTAGAGAAACAGAAGAGAGGGAACTCCACACAATCCAAAAAGTTACTCCTGTAGTGAGCTTATGAAACCTATCATGCTGCCTGTATCATATACAATCTGAAAATTAGCAATCCATTATAACTATCTGTTTGCAGGTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGA</genome_strand>
        <mrna_strand>CTTTCTCTGTATAGGAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719567" ref_strand="+" ref_description="SGN-E719567 [FC08BA05]">
      <seq>gggcgattggcggccaatcggccgaattgaagccatagccatgaccattaagaagctcttaaccctagcccgccggtcccgaaacccctcctaatcccattcactgcggcgtctttcttcggcgtctgccgccgtcgccgccacatcctcctccgccccggccatcggtccgccacccccagatgcaatgatctacgatcgattggctgaagacgttaaacgaaagatcaagagactcgagaatcctgattcccgattccttcagtacaactcgccacacccaactttagccgaccacacatcaatcctcagcttcccctctacgcgcgtgactacactaccatcgggcctgcgtgtggccacggagactaatctcgctgtcaagactgccaccgttggggtattcattgatgcagggtcaaggtttgagaccgatgagactaatggaacagctcattttcttgagcatatgatctttaagggtactgaaaagaggacttcttgggaaatggaggaggagattgagaatatgggtggacatttgaatgcatatacttccagggagcaaacagcatactatgctaaagtgttggataatgacgtccctgtagctttggatattttggctgatatacttcaaaattctaagttcgaagagaaaaagattgaacgtgaacgtgatgtcatcctcagggagatggaggaggtcgaaggtcaaacagaggaagtcatctttgaccacttgcattcaactgcattccagtactcacctttgggtaggactattcttggacctgcccagaatataaagacaatcaccagaagtcatctgaaggactacatatcaccacattataccgctccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76881" stop="74643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76603" g_stop="75927" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="706" r_length="677" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75926" i_stop="75103" i_length="824">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75102" g_stop="74943" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="866" r_length="160" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E719567" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76603" e_stop="75927"/>
          <exon e_start="75102" e_stop="74943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAGGTGCACTTTTTTTCTCTATTCTTTGATCTCTGAATATCAAGTTTGCTGTTTTTTCGATCTTTGTCAATGAGCTGCAATAACCCTACGTTATATTCTACTAGTCTCTGCATGCACTTGAAGCTTAACTAGTAAGCTGGTCACTAAAAACTAATTGGCATATTCATGTCAATTGACTAGTTTTACACTGACCGCCAACCTTGCAACCCTCATTACCCTCACGTAGGGTAAGAACTTGCTCTAACCCCAGTTCTGAAATTCAAGATCACTTGCGTTCTTGTTGAGTTCCCTGGATGCTAACAGGTTTTAACTTTACTGTTTCTTCGTTTTTCTTTTACTTCCATTTAAAATTACCTCTAGCTTCTTCAGTTTTATGAAAGTATACAGTCCATAGTATTTGAGTACTGTTGCAGAGAACTTTCAAAAGTAAATCTAATTGTATTATTTAGATTCAAAGAAATATCTGAATCCAATGAAACATAGGTAGATGTTGAAATGGTTTACTGATTAATATCCTAAGATTTTATTGAGGATTATTGTGCTTCAGGGAGTTGCCCTTGTTGATACAATGTAGTATTAAGTACTAACCGCTATGTATCCTCATTATTTGAGAGATTAAGAGCCATAATGAAGGAAATGAAATGGCCGTGCATTAAGTTTGTGATTGACCTTACAAAGAGAAGACGTTCCTCTCTAGAGAAACAGAAGAGAGGGAACTCCACACAATCCAAAAAGTTACTCCTGTAGTGAGCTTATGAAACCTATCATGCTGCCTGTATCATATACAATCTGAAAATTAGCAATCCATTATAACTATCTGTTTGCAGGTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCA</genome_strand>
        <mrna_strand>AAGCCATAGCCATGACCATTAAGAAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCCCTCCTAATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAAAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCACCACATTATACCGCTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729594" ref_strand="+" ref_description="SGN-E729594 [LA21CB04]">
      <seq>cctctttctctgtataggaaccacaacaaaccctagcctaatttacaagccatagccatgacgatccggcagctcttaaccctagcccgccggtcccgaaacctatcctcatcccattcactgcggcgtctttcttcggcgtctgccgccgtcgccgccacatcctcctccgccccggccatcggtccgccacccccagatgcaatgatctacgatcgattggctgaagacgttaaacgaaagatcaagagactcgagaatcctgattcccgattccttcagtacaactcgccacacccaactttagccgaccacacatcaatcctcagcttcccctctacgcgcgtgactacactaccatcgggcctgcgtgtggccacggagactaatctcgctgtcaagactgccaccgttggggtattcattgatgcagggtcaaggtttgagaccgatgagactaatggaacagctcattttcttgagcatatgatctttaagggtactgaaaagaggacttcttgggaaatggaggaggagattgagaatatgggtggacatttgaatgcatatacttccagggagcaaacagcatactatgctaaagtgttggataatgacgtccctgtagctttggatattttggctgatatacttcagaattctaagttcgaagagaaaaagattgaacgtgaacgtgatgtcatcctcaaggagatggaggaggtcgaaggtcaaacagaggaagtcatctttgaccacttgcattcaactgcattccagtactcacctttgggtaggactattcttggacctgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76949" stop="74709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76649" g_stop="75927" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75926" i_stop="75103" i_length="824">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75102" g_stop="75009" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="817" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E729594" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76649" e_stop="75927"/>
          <exon e_start="75102" e_stop="75009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTTCTCTGTATAGGAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAGGTGCACTTTTTTTCTCTATTCTTTGATCTCTGAATATCAAGTTTGCTGTTTTTTCGATCTTTGTCAATGAGCTGCAATAACCCTACGTTATATTCTACTAGTCTCTGCATGCACTTGAAGCTTAACTAGTAAGCTGGTCACTAAAAACTAATTGGCATATTCATGTCAATTGACTAGTTTTACACTGACCGCCAACCTTGCAACCCTCATTACCCTCACGTAGGGTAAGAACTTGCTCTAACCCCAGTTCTGAAATTCAAGATCACTTGCGTTCTTGTTGAGTTCCCTGGATGCTAACAGGTTTTAACTTTACTGTTTCTTCGTTTTTCTTTTACTTCCATTTAAAATTACCTCTAGCTTCTTCAGTTTTATGAAAGTATACAGTCCATAGTATTTGAGTACTGTTGCAGAGAACTTTCAAAAGTAAATCTAATTGTATTATTTAGATTCAAAGAAATATCTGAATCCAATGAAACATAGGTAGATGTTGAAATGGTTTACTGATTAATATCCTAAGATTTTATTGAGGATTATTGTGCTTCAGGGAGTTGCCCTTGTTGATACAATGTAGTATTAAGTACTAACCGCTATGTATCCTCATTATTTGAGAGATTAAGAGCCATAATGAAGGAAATGAAATGGCCGTGCATTAAGTTTGTGATTGACCTTACAAAGAGAAGACGTTCCTCTCTAGAGAAACAGAAGAGAGGGAACTCCACACAATCCAAAAAGTTACTCCTGTAGTGAGCTTATGAAACCTATCATGCTGCCTGTATCATATACAATCTGAAAATTAGCAATCCATTATAACTATCTGTTTGCAGGTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCC</genome_strand>
        <mrna_strand>CCTCTTTCTCTGTATAGGAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAAGGAGATGGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719482" ref_strand="+" ref_description="SGN-E719482 [FC08AA06]">
      <seq>ctcttaaccctagcccgccggtcccgaaacctatcctcatcccattcactgcggcgtctttcttcggcgtctgccgccgtcgccgccacatcctcctccgccccggccatcggtccgccacccccagatgcaatgatctacgatcgattggctgaagacgttaaacgaaagatcaagagactcgagaatcctgattcccgattccttcagtacaactcgccacacccaactttagccaaccacacatcaatcctcagcttcccctctacgcgcgtgactacactaccatcgggcctgcgtgtggccacggagactaatctcgctgtcaagactgccaccgttggggtattcattgatgcagggacaaggtttgagaccgatgagactaatggaacagctcattttcttgagcatatgatctttaagggtactgaaaagaggacttcttgggaaatggaggaggagattgagaatatgggtggacatttgaatgcatatacttccagggagcaaacagcatactatgctaaagtgttggataatgacgtccctgtagctttggatattttggctgatatacttcagaattctaagttcgaagagaaaaagattgaacgtgaacgtgatgtcatcctcagggagatggaggaggtcgaaggtcaaacaaaggaagtcatctttgaccacttgcattcaactgcattccagtactcacctttgggtaggactattcttggacctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76877" stop="74711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76577" g_stop="75927" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75926" i_stop="75103" i_length="824">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75102" g_stop="75011" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="743" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E719482" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76577" e_stop="75927"/>
          <exon e_start="75102" e_stop="75011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAGGTGCACTTTTTTTCTCTATTCTTTGATCTCTGAATATCAAGTTTGCTGTTTTTTCGATCTTTGTCAATGAGCTGCAATAACCCTACGTTATATTCTACTAGTCTCTGCATGCACTTGAAGCTTAACTAGTAAGCTGGTCACTAAAAACTAATTGGCATATTCATGTCAATTGACTAGTTTTACACTGACCGCCAACCTTGCAACCCTCATTACCCTCACGTAGGGTAAGAACTTGCTCTAACCCCAGTTCTGAAATTCAAGATCACTTGCGTTCTTGTTGAGTTCCCTGGATGCTAACAGGTTTTAACTTTACTGTTTCTTCGTTTTTCTTTTACTTCCATTTAAAATTACCTCTAGCTTCTTCAGTTTTATGAAAGTATACAGTCCATAGTATTTGAGTACTGTTGCAGAGAACTTTCAAAAGTAAATCTAATTGTATTATTTAGATTCAAAGAAATATCTGAATCCAATGAAACATAGGTAGATGTTGAAATGGTTTACTGATTAATATCCTAAGATTTTATTGAGGATTATTGTGCTTCAGGGAGTTGCCCTTGTTGATACAATGTAGTATTAAGTACTAACCGCTATGTATCCTCATTATTTGAGAGATTAAGAGCCATAATGAAGGAAATGAAATGGCCGTGCATTAAGTTTGTGATTGACCTTACAAAGAGAAGACGTTCCTCTCTAGAGAAACAGAAGAGAGGGAACTCCACACAATCCAAAAAGTTACTCCTGTAGTGAGCTTATGAAACCTATCATGCTGCCTGTATCATATACAATCTGAAAATTAGCAATCCATTATAACTATCTGTTTGCAGGTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGC</genome_strand>
        <mrna_strand>CTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCAACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGACAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGTCAAACAAAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554117" ref_strand="+" ref_description="SGN-E554117 [cTSC-3-E20]">
      <seq>aacaaaccctagcctaatttacaagccatagccatgacgatccggcagctcttaaccctagcccgccggtcccgaaacctatcctcatcccattcactgcggcgtctttcttcggcgtctgccgccgtcgccgccacatcctcctccgccccggccatcggtccgccacccccagatgcaatgatctacgatcgattggctgaagacgttaaacgaaagatcaagagactcgagaatcctgattcccgattccttcagtacaactcgccacacccaactttagccgaccacacatcaatcctcagcttcccctctacgcgcgtgactacactaccatcgggcctgcgtgtggccacggagactaatctcgctgtcaagactgccaccgttggggtattcattgatgcagggtcaaggtttgagaccgatgagactaatggaacagctcattttcttgagcatatgatctttaagggtactgaaaagaggacttcttgggaaatggaggaggagattgagaatatgggtggacatttgaatgcatatacttccagggagcaaacagcatactatgctaaagtgttggataatgacgtccctgtagctttggatattttggctgatatacttcagaattctaagttcgaagagaaaaagattgaacgtgaacgtgatgtcatcctcagggagatggaggaggtcgaaggtcaaacagaggaaagtcatctttgaccacttgcattcaactgcattccaatactcaccttttgggtaggactattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76925" stop="74720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76625" g_stop="75927" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75926" i_stop="75103" i_length="824">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75102" g_stop="75020" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="784" r_length="85" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E554117" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76625" e_stop="75927"/>
          <exon e_start="75102" e_stop="75020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAGGTGCACTTTTTTTCTCTATTCTTTGATCTCTGAATATCAAGTTTGCTGTTTTTTCGATCTTTGTCAATGAGCTGCAATAACCCTACGTTATATTCTACTAGTCTCTGCATGCACTTGAAGCTTAACTAGTAAGCTGGTCACTAAAAACTAATTGGCATATTCATGTCAATTGACTAGTTTTACACTGACCGCCAACCTTGCAACCCTCATTACCCTCACGTAGGGTAAGAACTTGCTCTAACCCCAGTTCTGAAATTCAAGATCACTTGCGTTCTTGTTGAGTTCCCTGGATGCTAACAGGTTTTAACTTTACTGTTTCTTCGTTTTTCTTTTACTTCCATTTAAAATTACCTCTAGCTTCTTCAGTTTTATGAAAGTATACAGTCCATAGTATTTGAGTACTGTTGCAGAGAACTTTCAAAAGTAAATCTAATTGTATTATTTAGATTCAAAGAAATATCTGAATCCAATGAAACATAGGTAGATGTTGAAATGGTTTACTGATTAATATCCTAAGATTTTATTGAGGATTATTGTGCTTCAGGGAGTTGCCCTTGTTGATACAATGTAGTATTAAGTACTAACCGCTATGTATCCTCATTATTTGAGAGATTAAGAGCCATAATGAAGGAAATGAAATGGCCGTGCATTAAGTTTGTGATTGACCTTACAAAGAGAAGACGTTCCTCTCTAGAGAAACAGAAGAGAGGGAACTCCACACAATCCAAAAAGTTACTCCTGTAGTGAGCTTATGAAACCTATCATGCTGCCTGTATCATATACAATCTGAAAATTAGCAATCCATTATAACTATCTGTTTGCAGGTCGAAGGTCAAACAGAGG-AAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACC-TTTGGGTAGGACTATTCT</genome_strand>
        <mrna_strand>AACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGGTCAAACAGAGGAAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAATACTCACCTTTTGGGTAGGACTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206526" ref_strand="+" ref_description="SGN-E206526 [cLEC-23-F4]">
      <seq>aagatcaagagactcgagaatcctgattcccgattccttcagtacaactcgccacacccaactttagccgaccacacatcaatcctcagcttcccctctacgcgcgtgactacactaccatcgggcctgcgtgtggccacggagactaatctcgctgtcaagactgccaccgttggggtattcattgatgcagggtcaaggtttgagaccgatgagactaatggaacagctcattttcttgagcatatgatctttaagggtactgaaaagaggacttcttgggaaatggaggaggagattgagaatatgggtggacatttgaatgcatatacttccagggagcaaacagcatactatgctaaagtgttggataatgacgtccctgtagctttggatattttggctgatatacttcagaattctaagttcgaagagaaaaagattgaacgtgaacgtgatgtcatcctcagggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76709" stop="75634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76409" g_stop="75934" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E206526" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76409" e_stop="75934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGAT</genome_strand>
        <mrna_strand>AAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726656" ref_strand="+" ref_description="SGN-E726656 [LA12BG12]">
      <seq>ccgctctttctctgtataggaaccacaacaaaccctagcctaatttacaagccatagccatgacgatccggcagctcttaaccctagcccgccggtcccgaaacctatcctcatcccattcactgcggcgtctttcttcggcgtctgccgccgtcgccgccacatcctcctccgccccggccatcggtccgccacccccagatgcaatgatctacgatcgattggctgaagacgttaaacgaaagatcaagagactcgagaatcctgattcccgattccttcagtacaactcgccacacccaactttagccgaccacacatcaatcctcagcttcccctctacgcgcgtgactacactaccatcgggcctgcgtgtggccacggagactaatctcgctgtcaagactgccaccgttggggtattcattgatgcagggtcaaggtttgagaccgatgagactaatggaacagctcattttcttgagcatatgatctttaagggtactgaaaagaggacttcttgggaaatggaggaggagattgagaatatgggtggacatttgaatgcatatacttccagggagcaaacagcatactatgctaaagtgttggataatgacgtccctgtagctttggatattttggctgatatacttcagaattctaagttcgaagagaaaaagattgaacgtgaacgtgatgtcatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76950" stop="75643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76651" g_stop="75943" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E726656" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76651" e_stop="75943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCTTTCTCTGTATAGGAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCT</genome_strand>
        <mrna_strand>CCGCTCTTTCTCTGTATAGGAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208693" ref_strand="+" ref_description="SGN-E208693 [cLEC-39-N9]">
      <seq>ccagatgcaatgatctacgatcgattggctgaagacgttaaacgaaagatcaagagactcgggaatcctgattcccgattccttcagtacaactcgccacacccaactttagccgaccacacatcaatcctcagcttgccctctacgcgcgtgactacactaccatcgggcctgcgtgtggccacggagactaatctcgctgtcaagactgccaccgttggggtattcattgatgcagggtcaaggtttgagaccgatgagactaatggaacagctcattttcttgagcatatgatctttaagggtactgaaaagaggacttcttgggaaatggaggaggagattgagaatatgggtggacatttgaatgcatatacttccagggagcaaacagcatactatgctgaagtgttggataatgacgtccctgtagctttggatattttggctgatatacttcagaattctaagttcgaagagaaaaaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76754" stop="75667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76454" g_stop="75966" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E208693" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76454" e_stop="75966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATT</genome_strand>
        <mrna_strand>CCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGGGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTGCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTGAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725237" ref_strand="+" ref_description="SGN-E725237 [FC26CA03]">
      <seq>aaccctagcccgccggtcccgaaacctatcctcatcccattcactgcggcgtctttcttcggcgtctgccgccgtcgccgccacatcctcctccgccccggccatcggtccgccacccccagatgcaatgatctacgatcgattggctgaagacgttaaacgaaagatcaagagactcgagaatcctgattcccgattccttcagtacaactcgccacacccaactttagccgaccacacatcaatcctcagcttcccctctacgcgcgtgactacactaccatcgggcctgcgtgtggccacggagactaatctcgctgtcaagactgccaccgttggggtattcattgatgcagggtcaaggtttgagaccgatgagactaatggaacagctcattttcttgagcatatgatctttaagggtactgaaaagaggacttcttgggaaatggaggaggagattgagaatatgggtggacatttgaatgcatatacttccggggagcaaacagcatactatgctaaagtgttggataatgacgtccctgtagctttggatattttggctgatatacttcaaaattctaagttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76872" stop="75680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76572" g_stop="75980" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E725237" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76572" e_stop="75980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCG</genome_strand>
        <mrna_strand>AACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCGGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAAAATTCTAAGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334382" ref_strand="+" ref_description="SGN-E334382 [cTOD-21-B14]">
      <seq>tcgaccagagcgtgcttcttgattttcttgagcttcgttcccatttccctctttctctgtataggaaccacaacaaaccctagcctaatttacaagccatagccatgacgatccggcagctcttaaccctagcccgccggtcccgaaacctatcctcatcccattcactgcggcgtctttcttcggcgtctgccgccgtcgccgccacatcctcctccgccccggccatcggtccgccacccccagatgcaatgatctacgatcgattggctgaagacgttaaacgaaagatcaagagactcgagaatcctgattcccgattccttcagtacaactcgccacacccaactttagccgaccacacatcaatcctcagcttcccctctacgcgcgtgactacactaccatcgggcctgcgtgtggccacggagactaatctcgctgtcaagactgccaccgttggggtattcattgatgcagggtcaaggtttgagaccgatgagactaatggaacagctcattttcttgagcatatgatctttaagggtactgaaaagaggacttcttgggaaatggaggangagattgagaatatgggtggacatttgaatgcatatacttccaggggagcaacagcatactatgctaaagtgttggataatgacgtccctgtagctttggatatttttggctgatatacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76996" stop="75695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76696" g_stop="75995" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E334382" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76696" e_stop="75995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACCAGAGCGTGCTTCTTGATTTTCTTGAGCTTCGTTCCCATTTCCCTCTTTCTCTGTATAGGAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATA-TTTTGGCTGATATACTTC</genome_strand>
        <mrna_strand>TCGACCAGAGCGTGCTTCTTGATTTTCTTGAGCTTCGTTCCCATTTCCCTCTTTCTCTGTATAGGAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGANGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGGAGCAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTTGGCTGATATACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334177" ref_strand="+" ref_description="SGN-E334177 [cTOD-21-B13]">
      <seq>tcgaccagagcgtgcttcttgattttcttgagcttcgttcccatttccctctttctctgtataggaaccacaacaaaccctagcctaatttacaagccatagccatgacgatccggcagctcttaaccctagcccgccggtcccgaaacctatcctcatcccattcactgcggcgtctttcttcggcgtctgccgccgtcgccgccacatcctcctccgccccggccatcggtccgccacccccagatgcaatgatctacgatcgattggctgaagacgttaaacgaaagatcaagagactcgagaatcctgattcccgattccttcagtacaactcgccacacccaactttagccgaccacacatcaatcctcagcttcccctctacgcgcgtgactacactaccatcgggcctgcgtgtggccacggagactaatctcgctgtcaagactgccaccgttggggtattcattgatgcagggtcaaggtttgagaccgatgagactaatggaacagctcattttcttgagcatatgatctttaagggtactgaaaagaggacttcttgggaaatggaggaggagattgagaatatgggtggacatttgaatgcatatacttccagggagcaaacagcatactatgctaaagtgttggataatgacgtccctgtagctttggatattttggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76996" stop="75704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76696" g_stop="76004" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E334177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76696" e_stop="76004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACCAGAGCGTGCTTCTTGATTTTCTTGAGCTTCGTTCCCATTTCCCTCTTTCTCTGTATAGGAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTG</genome_strand>
        <mrna_strand>TCGACCAGAGCGTGCTTCTTGATTTTCTTGAGCTTCGTTCCCATTTCCCTCTTTCTCTGTATAGGAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728734" ref_strand="+" ref_description="SGN-E728734 [LA18DB05]">
      <seq>catttccctctttctctgtataggaaccacaacaaaccctagcctaatttacaagccatagccatgacgatccggcagctgttaaccctagcccgccggtcccgaaacctatcctcatcccattcactgcggcgtctttcttcggcgtctgccgccgtcgccgccacatcctcctccgccccggccatcggtccgccacccccagatgcaatgatctacgatcgattggctgaagacgttaaacgaaagatcaagagactcgagaatcctgattcccgattccttcagtacaactcgccacacccaactttagccgaccacacatcaatcctcagcttcccctctacgcgcgtgactacactaccatcgggcctgcgtgtggccacggagactaatctcgctgtcaagactgccaccgttggggtattcattgatgcagggtcaaggtttgagaccgatgagactaatggaacagctcattttcttgagcatatgatctttaagggtactgaaaagaggacttcttgggaaatggaggaggagattgagaatatgggtggacatttgaatgcatatacttccagggagcaaacagcatactatgctaaagtgttggataatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76955" stop="75733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76655" g_stop="76033" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E728734" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76655" e_stop="76033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCCCTCTTTCTCTGTATAGGAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGA</genome_strand>
        <mrna_strand>CATTTCCCTCTTTCTCTGTATAGGAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTGTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273116" ref_strand="+" ref_description="SGN-E273116 [cLEM-24-O3]">
      <seq>tctttctctgtataggaaccacaacaaaccctagcctaatttacaagccatagccatgacgatccggcagctcttaaccctagcccgccggtcccgaaacctatcctcatcccattcactgcggcgtctttcttcggcgtctgccgccgtcgccgccacatcctcctccgccccggccatcggtccgccacccccagatgcaatgatctacgatcgattggctgaagacgttaaacgaaagatcaagagactcgagaatcctgattcccgattccttcagtacaactcgccacacccaactttagccgaccacacatcaatcctcagcttcccctctacgcgcgtgactacactaccatcgggcctgcgtgtggccacggagactaatctcgctgtcaagactgccaccgttggggtattcattgatgcagggtcaaggtttgagaccgatgagactaatggaacagctcattttcttgagcatatgatctttaagggtactgaaaagaggacttcttgggaaatggaggaggagattgagaatatgggtggacatttgaatgcatatacttccagggagcaaacagcatactatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76947" stop="75749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76647" g_stop="76049" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E273116" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76647" e_stop="76049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTCTGTATAGGAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTA</genome_strand>
        <mrna_strand>TCTTTCTCTGTATAGGAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270140" ref_strand="+" ref_description="SGN-E270140 [cLEM-7-H2]">
      <seq>gaaccacaacaaaccctagcctaatttacaagccatagccatgacgatccggcagctcttaaccctagcccgccggtcccgaaacctatcctcatcccattcactgcggcgtctttcttcggcgtctgccgccgtcgccgccacatcctcctccgccccggccatcggtccgccacccccagatgcaatgatctacgatcgattggctgaagacgttaaacgaaagatcaagagactcgagaatcctgattcccgattccttcagtacaactcgccacacccaactttagccgaccacacatcaatcctcagcttcccctctacgcgcgtgactacactaccatcgggcctgcgtgtggccacggagactaatctcgctgtcaagactgccaccgttggggtattcattgatgcagggtcaaggtttgagaccgatgagactaatggaacagctcattttcttgagcatatgatctttaagggtactgaaaagaggacttcttgggaaatggaggaggagattgagaatatgggtggacatttgaatgcatatacttccagggagcaaacagcatactatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76932" stop="75751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76632" g_stop="76051" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E270140" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76632" e_stop="76051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGC</genome_strand>
        <mrna_strand>GAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205293" ref_strand="+" ref_description="SGN-E205293 [cLEC-25-F18]">
      <seq>aatgatctacgatcgattggctgaagacgttaaacgaaagatcaagagactcgagaatcctgattcccgattccttcagtacaactcgccacacccaactttagccgaccacacatcaatcctcagcttcccctctacgcgcgtgactacactaccatcgggcctgcgtgtggccacggagactaatctcgctgtcaagactgccaccgttggggtattcattgatgcagggtcaaggtttgagaccgatgagactaatggaacagctcattttcttgagcatatgatctttaagggtactgaaaagaggacttcttgggaaatggaggaggagattgagaatatgggtggacatttgaatgcatatacttccagggagcaaacagcatactatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76746" stop="75751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76446" g_stop="76051" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E205293" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76446" e_stop="76051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGC</genome_strand>
        <mrna_strand>AATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268790" ref_strand="+" ref_description="SGN-E268790 [cLEM-4-B19]">
      <seq>gaaccacaacaaaccctagcctaatttacaagccatagccatgacgatccggcagctcttaaccctagcccgccggtcccgaaacctatcctcatcccattcactgcggcgtctttcttcggcgtctgccgccgtcgccgccacatcctcctccgccccggccatcggtccgccacccccagatgcaatgatctacgatcgattggctgaagacgttaaacgaaagatcaagagactcgagaatcctgattcccgattccttcagtacaactcgccacacccaactttagccgaccacacatcaatcctcagcttcccctctacgcgcgtgactacactaccatcgggcctgcgtgtggccacggagactaatctcgctgtcaagactgccaccgttggggtattcattgatgcagggtcaaggtttgagaccgatgagactaatggaacagctcattttcttgagcatatgatctttaagggtactgaaaagaggacttcttgggaaatggaggaggagattgagaatatgggtggacatttgaatgcatatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76932" stop="75778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76632" g_stop="76078" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E268790" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76632" e_stop="76078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATAC</genome_strand>
        <mrna_strand>GAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248120" ref_strand="+" ref_description="SGN-E248120 [cLEF-47-N18]">
      <seq>actgcggcgtctttcttcggcgtctgccgccgtcgccgccacatcctcctccgccccggccatcggtccgccacccccagatgcaatgatctacgatcgattggctgaagacgttaaacgaaagatcaagagactcgagaatcctgattcccgattccttcagtacaactcgccacacccaactttagccgaccacacatcaatcctcagcttcccctctacgcgcgtgactacactaccatcgggcctgcgtgtggccacggagactaatctcgctgtcaagactgccaccgttggggtattcattgatgcagggtcaaggtttgagaccgatgagactaatggaacagctcattttcttgagcatatgatctttaagggtactgaaaagaggacttcttgggaaatggaggaggagattgagaatatgggtggacatttgaatgcatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76830" stop="75779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76530" g_stop="76079" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E248120" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76530" e_stop="76079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATA</genome_strand>
        <mrna_strand>ACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306765" ref_strand="+" ref_description="SGN-E306765 [cLEY-11-A9]">
      <seq>tataggaaccacaacaaaccctagcctaatttacaagccatagccatgacgatccggcagctcttaaccctagcccgccggtcccgaaacctatcctcatcccattcactgcggcgtctttcttcggcgtctgccgccgtcgccgccacatcctcctccgccccggccatcggtccgccacccccagatgcaatgatctacgatcgattggctgaagacgttaaacgaaagatcaagagactcgagaatcctgattcccgattccttcagtacaactcgccacacccaactttagccgaccacacatcaatcctcagcttcccctctacgcgcgtgactacactaccatcgggcctgcgtgtggccacggagactaatctcgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76937" stop="75953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76637" g_stop="76253" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E306765" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76637" e_stop="76253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGGAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTG</genome_strand>
        <mrna_strand>TATAGGAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297805" ref_strand="+" ref_description="SGN-E297805 [cLET-38-H15]">
      <seq>ttctctgtataggaaccacaacaaaccctagcctaatttacaagccatagccatgacgatccggcagctcttaaccctagcccgccggtcccgaaacctatcctcatcccattcactgcggcgtctttcttcggcgtctgccgccgtcgccgccacatcctcctccgccccggccatcggtccgccacccccagatgcaatgatctacgatcgattggctgaagacgttaaacgaaagatcaagagactcgagaatcctgattcccgattccttcagtacaactcgccacacccaactttagccgaccacacatcaatcctcagcttcccctctacgcgcgtgactacactaccatcgggcctgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="76944" stop="75978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76644" g_stop="76278" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E297805" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76644" e_stop="76278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGTATAGGAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGT</genome_strand>
        <mrna_strand>TTCTCTGTATAGGAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209741" ref_strand="+" ref_description="SGN-E209741 [cLEC-52-G22]">
      <seq>agatccatctttttcctctttcattttctcctcaaattcgtctctaagagttaaaaaagaagaaagaaaaatggtgaagatttgctgcataggagctggatatgttggtggccccaccatggcagtcattgcactcaaatgccccaagattgaagtggtcgttgttgatatctctgtacctcgcattactgcctggaacagtgacacacttcccatctatgagccaggccttgacgatgtggtcaagcaatgccgaggcaagaatctcttcttcagcacagatgtggagaaacatgtgcacgaggctgatatagtttttgtttctgtcaacactcctaccaagactaggggtcttggagcaggcaaggctgcagatcttacctactgggagagtgcagcccgtatgattgccgatgtctcgaaatctgacaaaatagttgttgagaaatcaactgttccagtaaaaactgctgaggcaattgaaaagattttgacccacaacagcaagggaattaacttccagatcctctcaaaccctgaatttcttgcagagggtactgcaatcgacgacctctttaaacctgacagggttctgattggaggccgggaaactccaggaggccagaaagctatccaagcattgaaggatgtttatgctcattgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="84234" stop="86616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84534" g_stop="84581" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84582" i_stop="85698" i_length="1117">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85699" g_stop="86316" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="666" r_length="618" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E209741" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84534" e_stop="84581"/>
          <exon e_start="85699" e_stop="86316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCCATCTTTTTCCTCTTTCATTTTCTCCTCAAATTCGTCTCTAAGGTATGAATTTTCTAATTGCTTTTTCATATTCTGTTCTTAATTTCAGCTGCACTCTATGCATTTACATGATTATGTGTATCATTTTTTTATGATCATCAGCTTGTTATATTTGTTCTATTTCATAGATCAGAAGTTGTGAATTTTTTAGTAGTATTTTCAACGTTAATTTGAGGGAAAATGATGAATTACACGATTTGGAGTTTTGTATCTCAAGCATGTATGATTCAGCTTGCTATATTTGTCGATTTCGGTGATCAGAAGGTGTGAATTTGGTGTATTTTTCAAGGGTAATATGAGGAGGAAAAGGTTGATTTACACAACTTGGTGTGTAACAACGCAATCATTTATGATTTTATAGATTCAAAAGTTTTAATATTGTGGAAACACACTGTCATCTTTCATGATTTTGATTAATTATGGAAGTGCTTAATTATACATAAATGAATTGTTAGATATTGATTAGATCTAGTTTTTGTTCATATCATTCAGAGATGGATCTGAAATATGACTTTTAGTGGATGATCTGGATGTCTTTGTATTAGATCTGGTCAAGATCACGGTTACTGAATATCATTTCCTCTTGCATTTGTTAGTTTCTGTATTAAATTAGTGACGTTGGCCTTATTTCCAGTTGTTTGAGAATTACATATCAAGTTGTTAAAATTGCATGTTAATGTCATCCTCTGAATGTAAAATTTCCTCTTCCGTTTTACTGTAATAGTTGTTCGACATGGTATGTTTTGAGTGTATTCTTGTTCAGGAAGTCTAATATTTTGTATGTATTTTCTTCTTGTTTACTCTGCAATGAGAAATGCATGAAACATTAAGTTTTTATGGTTAGGTGTTACATTTTATAGTTTAGAATGTAGATCTTGTGGTAAGTATTGGGCAGATAGAGTAATTGCGGTGATTACTCCAATCATTATTTTCATTTTGGATGTCATGATCGGACCCTAAGCATTTGCTTAAGGCGTTAGCTGTTATACACACGTTAAAGCTTTTAGTTTATCAGTTAATGCATATTCGTTGATATGTTGTTTGTTGTACATGATGATGGGTTTTTCCTTGACCTTGAGAAGTTTAGCCTCAGAAATATGTGAACTTTTGTCTGTTACAGAGTTAAAAAAGAAGAAAGAAAAATGGTGAAGATTTGCTGCATAGGAGCTGGATATGTTGGTGGCCCCACCATGGCAGTCATTGCACTCAAATGCCCCAAGATTGAAGTGGTCGTTGTTGATATCTCTGTACCTCGCATTACTGCCTGGAACAGTGACACACTTCCCATCTATGAGCCAGGCCTTGACGATGTGGTCAAGCAATGCCGAGGCAAGAATCTCTTCTTCAGCACAGATGTGGAGAAACATGTGCACGAGGCTGATATAGTTTTTGTTTCTGTCAACACTCCTACCAAGACTAGGGGTCTTGGAGCAGGCAAGGCTGCAGATCTTACCTACTGGGAGAGTGCAGCCCGTATGATTGCCGATGTCTCGAAATCTGACAAAATAGTTGTTGAGAAATCAACTGTTCCAGTAAAAACTGCTGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGATTGGAGGCCGGGAAACTCCAGGAGGCCAGAAGGCTATCCAAGCATTGAAGGATGTTTATGCTCATTGGGT</genome_strand>
        <mrna_strand>AGATCCATCTTTTTCCTCTTTCATTTTCTCCTCAAATTCGTCTCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTAAAAAAGAAGAAAGAAAAATGGTGAAGATTTGCTGCATAGGAGCTGGATATGTTGGTGGCCCCACCATGGCAGTCATTGCACTCAAATGCCCCAAGATTGAAGTGGTCGTTGTTGATATCTCTGTACCTCGCATTACTGCCTGGAACAGTGACACACTTCCCATCTATGAGCCAGGCCTTGACGATGTGGTCAAGCAATGCCGAGGCAAGAATCTCTTCTTCAGCACAGATGTGGAGAAACATGTGCACGAGGCTGATATAGTTTTTGTTTCTGTCAACACTCCTACCAAGACTAGGGGTCTTGGAGCAGGCAAGGCTGCAGATCTTACCTACTGGGAGAGTGCAGCCCGTATGATTGCCGATGTCTCGAAATCTGACAAAATAGTTGTTGAGAAATCAACTGTTCCAGTAAAAACTGCTGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGATTGGAGGCCGGGAAACTCCAGGAGGCCAGAAAGCTATCCAAGCATTGAAGGATGTTTATGCTCATTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701461" ref_strand="+" ref_description="SGN-E701461 [FA16AB10]">
      <seq>gccctatctttttcctctttcattttctcctcaaattcgtctctcctagttaaaaaagaagaaagaaaaatggtgaagatttgctgcataggagctggatatgttggtggccccaccatggcagtcattgcactcaaatgccccaagattgaagtggtcgttgttgatatctctgtacctcgcattactgcctggaacagtgacacacttcccatctatgagccaggccttgacgatgtggtcaagcaatgccgaggcaagaatctcttcttcagcacagatgtggagaaacatgtgcacgaggctgatatagtttttgtttctgtcaacactcctaccaagactaggggtcttggagcaggcaaggctgcagatcttacctactgggagagtgcagcccgtatgattgccgatgtctcgaaatctgacaaaatagttgttgagaaatcaactgttccagtaaaaactgctgaggcaattgaaaagattttgacccacaacagcaagggaattaacttccagatcctctcaaaccctgaatttcttgcagagggtactgcaatcgacgacctctttaaacctgacagggttctgattggaggccgggaaactccacgaggccaaaaggctatccaagcattgaaggatgtttatgctcattgggtccctgaagccactatcattaccaccaacttgtggtccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="84238" stop="86654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84535" g_stop="84581" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84582" i_stop="85698" i_length="1117">
            <donor d_prob="0.998" d_score="0.87"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85699" g_stop="86354" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="703" r_length="656" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E701461" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84535" e_stop="84581"/>
          <exon e_start="85699" e_stop="86354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCATCTTTTTCCTCTTTCATTTTCTCCTCAAATTCGTCTCTAAGGTATGAATTTTCTAATTGCTTTTTCATATTCTGTTCTTAATTTCAGCTGCACTCTATGCATTTACATGATTATGTGTATCATTTTTTTATGATCATCAGCTTGTTATATTTGTTCTATTTCATAGATCAGAAGTTGTGAATTTTTTAGTAGTATTTTCAACGTTAATTTGAGGGAAAATGATGAATTACACGATTTGGAGTTTTGTATCTCAAGCATGTATGATTCAGCTTGCTATATTTGTCGATTTCGGTGATCAGAAGGTGTGAATTTGGTGTATTTTTCAAGGGTAATATGAGGAGGAAAAGGTTGATTTACACAACTTGGTGTGTAACAACGCAATCATTTATGATTTTATAGATTCAAAAGTTTTAATATTGTGGAAACACACTGTCATCTTTCATGATTTTGATTAATTATGGAAGTGCTTAATTATACATAAATGAATTGTTAGATATTGATTAGATCTAGTTTTTGTTCATATCATTCAGAGATGGATCTGAAATATGACTTTTAGTGGATGATCTGGATGTCTTTGTATTAGATCTGGTCAAGATCACGGTTACTGAATATCATTTCCTCTTGCATTTGTTAGTTTCTGTATTAAATTAGTGACGTTGGCCTTATTTCCAGTTGTTTGAGAATTACATATCAAGTTGTTAAAATTGCATGTTAATGTCATCCTCTGAATGTAAAATTTCCTCTTCCGTTTTACTGTAATAGTTGTTCGACATGGTATGTTTTGAGTGTATTCTTGTTCAGGAAGTCTAATATTTTGTATGTATTTTCTTCTTGTTTACTCTGCAATGAGAAATGCATGAAACATTAAGTTTTTATGGTTAGGTGTTACATTTTATAGTTTAGAATGTAGATCTTGTGGTAAGTATTGGGCAGATAGAGTAATTGCGGTGATTACTCCAATCATTATTTTCATTTTGGATGTCATGATCGGACCCTAAGCATTTGCTTAAGGCGTTAGCTGTTATACACACGTTAAAGCTTTTAGTTTATCAGTTAATGCATATTCGTTGATATGTTGTTTGTTGTACATGATGATGGGTTTTTCCTTGACCTTGAGAAGTTTAGCCTCAGAAATATGTGAACTTTTGTCTGTTACAGAGTTAAAAAAGAAGAAAGAAAAATGGTGAAGATTTGCTGCATAGGAGCTGGATATGTTGGTGGCCCCACCATGGCAGTCATTGCACTCAAATGCCCCAAGATTGAAGTGGTCGTTGTTGATATCTCTGTACCTCGCATTACTGCCTGGAACAGTGACACACTTCCCATCTATGAGCCAGGCCTTGACGATGTGGTCAAGCAATGCCGAGGCAAGAATCTCTTCTTCAGCACAGATGTGGAGAAACATGTGCACGAGGCTGATATAGTTTTTGTTTCTGTCAACACTCCTACCAAGACTAGGGGTCTTGGAGCAGGCAAGGCTGCAGATCTTACCTACTGGGAGAGTGCAGCCCGTATGATTGCCGATGTCTCGAAATCTGACAAAATAGTTGTTGAGAAATCAACTGTTCCAGTAAAAACTGCTGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGATTGGAGGCCGGGAAACTCCAGGAGGCCAGAAGGCTATCCAAGCATTGAAGGATGTTTATGCTCATTGGGTCCCTGAAGCCAATATCATTACCACCAACTTGTGGTCCG</genome_strand>
        <mrna_strand>GCCCTATCTTTTTCCTCTTTCATTTTCTCCTCAAATTCGTCTCTCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTAAAAAAGAAGAAAGAAAAATGGTGAAGATTTGCTGCATAGGAGCTGGATATGTTGGTGGCCCCACCATGGCAGTCATTGCACTCAAATGCCCCAAGATTGAAGTGGTCGTTGTTGATATCTCTGTACCTCGCATTACTGCCTGGAACAGTGACACACTTCCCATCTATGAGCCAGGCCTTGACGATGTGGTCAAGCAATGCCGAGGCAAGAATCTCTTCTTCAGCACAGATGTGGAGAAACATGTGCACGAGGCTGATATAGTTTTTGTTTCTGTCAACACTCCTACCAAGACTAGGGGTCTTGGAGCAGGCAAGGCTGCAGATCTTACCTACTGGGAGAGTGCAGCCCGTATGATTGCCGATGTCTCGAAATCTGACAAAATAGTTGTTGAGAAATCAACTGTTCCAGTAAAAACTGCTGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGATTGGAGGCCGGGAAACTCCACGAGGCCAAAAGGCTATCCAAGCATTGAAGGATGTTTATGCTCATTGGGTCCCTGAAGCCACTATCATTACCACCAACTTGTGGTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266261" ref_strand="+" ref_description="SGN-E266261 [cLEI-3-F7]">
      <seq>tttcattttctcctcaaattcgtctctaagagttaaaaaagaagaaagaaaaatggtgaagatttgctgcataggagctggatatgttggtggccccaccatggcagtcattgcactcaaatgccccaagattgaagtggtcgttgttgatatctctgtacctcgcattactgcctggaacagtgacacacttcccatctatgagccaggccttgacgatgtggtcaagcaatgccgaggcaagaatctcttcttcagcacagatgtggagaaacatgtgcacgaggctgatatagtttttgtttctgtcaacactcctaccaagactaggggtcttggagcaggcaaggctgcagatcttacctactgggagagtgcagcccgtatgattgccgatgtctcgaaatctgacaaaatagttgttgagaaatcaactgttccagtaaaaactgctgaggcaattgaaaagattttgacccacaacagcaagggaattaacttccagatcctctcaaaccctgaatttcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="84252" stop="86499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84552" g_stop="84581" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84582" i_stop="85698" i_length="1117">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85699" g_stop="86199" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="531" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E266261" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84552" e_stop="84581"/>
          <exon e_start="85699" e_stop="86199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTTTCTCCTCAAATTCGTCTCTAAGGTATGAATTTTCTAATTGCTTTTTCATATTCTGTTCTTAATTTCAGCTGCACTCTATGCATTTACATGATTATGTGTATCATTTTTTTATGATCATCAGCTTGTTATATTTGTTCTATTTCATAGATCAGAAGTTGTGAATTTTTTAGTAGTATTTTCAACGTTAATTTGAGGGAAAATGATGAATTACACGATTTGGAGTTTTGTATCTCAAGCATGTATGATTCAGCTTGCTATATTTGTCGATTTCGGTGATCAGAAGGTGTGAATTTGGTGTATTTTTCAAGGGTAATATGAGGAGGAAAAGGTTGATTTACACAACTTGGTGTGTAACAACGCAATCATTTATGATTTTATAGATTCAAAAGTTTTAATATTGTGGAAACACACTGTCATCTTTCATGATTTTGATTAATTATGGAAGTGCTTAATTATACATAAATGAATTGTTAGATATTGATTAGATCTAGTTTTTGTTCATATCATTCAGAGATGGATCTGAAATATGACTTTTAGTGGATGATCTGGATGTCTTTGTATTAGATCTGGTCAAGATCACGGTTACTGAATATCATTTCCTCTTGCATTTGTTAGTTTCTGTATTAAATTAGTGACGTTGGCCTTATTTCCAGTTGTTTGAGAATTACATATCAAGTTGTTAAAATTGCATGTTAATGTCATCCTCTGAATGTAAAATTTCCTCTTCCGTTTTACTGTAATAGTTGTTCGACATGGTATGTTTTGAGTGTATTCTTGTTCAGGAAGTCTAATATTTTGTATGTATTTTCTTCTTGTTTACTCTGCAATGAGAAATGCATGAAACATTAAGTTTTTATGGTTAGGTGTTACATTTTATAGTTTAGAATGTAGATCTTGTGGTAAGTATTGGGCAGATAGAGTAATTGCGGTGATTACTCCAATCATTATTTTCATTTTGGATGTCATGATCGGACCCTAAGCATTTGCTTAAGGCGTTAGCTGTTATACACACGTTAAAGCTTTTAGTTTATCAGTTAATGCATATTCGTTGATATGTTGTTTGTTGTACATGATGATGGGTTTTTCCTTGACCTTGAGAAGTTTAGCCTCAGAAATATGTGAACTTTTGTCTGTTACAGAGTTAAAAAAGAAGAAAGAAAAATGGTGAAGATTTGCTGCATAGGAGCTGGATATGTTGGTGGCCCCACCATGGCAGTCATTGCACTCAAATGCCCCAAGATTGAAGTGGTCGTTGTTGATATCTCTGTACCTCGCATTACTGCCTGGAACAGTGACACACTTCCCATCTATGAGCCAGGCCTTGACGATGTGGTCAAGCAATGCCGAGGCAAGAATCTCTTCTTCAGCACAGATGTGGAGAAACATGTGCACGAGGCTGATATAGTTTTTGTTTCTGTCAACACTCCTACCAAGACTAGGGGTCTTGGAGCAGGCAAGGCTGCAGATCTTACCTACTGGGAGAGTGCAGCCCGTATGATTGCCGATGTCTCGAAATCTGACAAAATAGTTGTTGAGAAATCAACTGTTCCAGTAAAAACTGCTGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGC</genome_strand>
        <mrna_strand>TTTCATTTTCTCCTCAAATTCGTCTCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTAAAAAAGAAGAAAGAAAAATGGTGAAGATTTGCTGCATAGGAGCTGGATATGTTGGTGGCCCCACCATGGCAGTCATTGCACTCAAATGCCCCAAGATTGAAGTGGTCGTTGTTGATATCTCTGTACCTCGCATTACTGCCTGGAACAGTGACACACTTCCCATCTATGAGCCAGGCCTTGACGATGTGGTCAAGCAATGCCGAGGCAAGAATCTCTTCTTCAGCACAGATGTGGAGAAACATGTGCACGAGGCTGATATAGTTTTTGTTTCTGTCAACACTCCTACCAAGACTAGGGGTCTTGGAGCAGGCAAGGCTGCAGATCTTACCTACTGGGAGAGTGCAGCCCGTATGATTGCCGATGTCTCGAAATCTGACAAAATAGTTGTTGAGAAATCAACTGTTCCAGTAAAAACTGCTGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690707" ref_strand="+" ref_description="SGN-E690707 [LH_Ea04D09]">
      <seq>cacgtgtctgttacagagttaaaaaagaagaaagaaaaatggtgaagatttgctgcataggagctggatatgttggtggccccaccatggcagtcattgcactcaaatgccccaagattgaagtggtcgttgttgatatctctgtacctcgcattactgcctggaacagtgacacacttcccatctatgagcctggccttgacgatgtggtcaagcaatgccgaggcaagaatctcttcttcagcacagatgtggagaaacatgtacatgaggctgatatagtttttgtttctgtcaacactcctaccaagactaggggtcttggagcaggcaaggctgcagatcttacctactgggagagtgcagcccgtatgattgccgatgtctcgaaatctgacaaaatagttgttgagaaatcaactgttccagtaaaaactgctgaggcaattgaaaagattttgacccacaacagcaagggaattaacttccagatcctctcaaaccctgaatttcttgcagagggtactgcaatcgacgacctctttaaacctgacagggttctgattggaggccgggaaactccaggaggccagaaggctatccaagcattgaaggatgtttatgctcattgggtccctgaagccaatatcattaccaccaacttgtggtccgctgagctctcaaagttggctgccaatgcatttttggcacaaagaatctcttctgtgaatgccatgtcagctctctgtgaggctacaggagcaaacgtttcacaggtggcatatgctgttggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="85387" stop="86778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85683" g_stop="86478" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="796" r_length="796" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E690707" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85683" e_stop="86478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGTCTGTTACAGAGTTAAAAAAGAAGAAAGAAAAATGGTGAAGATTTGCTGCATAGGAGCTGGATATGTTGGTGGCCCCACCATGGCAGTCATTGCACTCAAATGCCCCAAGATTGAAGTGGTCGTTGTTGATATCTCTGTACCTCGCATTACTGCCTGGAACAGTGACACACTTCCCATCTATGAGCCAGGCCTTGACGATGTGGTCAAGCAATGCCGAGGCAAGAATCTCTTCTTCAGCACAGATGTGGAGAAACATGTGCACGAGGCTGATATAGTTTTTGTTTCTGTCAACACTCCTACCAAGACTAGGGGTCTTGGAGCAGGCAAGGCTGCAGATCTTACCTACTGGGAGAGTGCAGCCCGTATGATTGCCGATGTCTCGAAATCTGACAAAATAGTTGTTGAGAAATCAACTGTTCCAGTAAAAACTGCTGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGATTGGAGGCCGGGAAACTCCAGGAGGCCAGAAGGCTATCCAAGCATTGAAGGATGTTTATGCTCATTGGGTCCCTGAAGCCAATATCATTACCACCAACTTGTGGTCCGCTGAGCTCTCAAAGTTGGCTGCCAATGCATTTTTGGCACAAAGAATCTCTTCTGTGAATGCCATGTCAGCTCTCTGTGAGGCTACAGGAGCAAACGTTTCACAGGTGGCATATGCTGTTGGTAA</genome_strand>
        <mrna_strand>CACGTGTCTGTTACAGAGTTAAAAAAGAAGAAAGAAAAATGGTGAAGATTTGCTGCATAGGAGCTGGATATGTTGGTGGCCCCACCATGGCAGTCATTGCACTCAAATGCCCCAAGATTGAAGTGGTCGTTGTTGATATCTCTGTACCTCGCATTACTGCCTGGAACAGTGACACACTTCCCATCTATGAGCCTGGCCTTGACGATGTGGTCAAGCAATGCCGAGGCAAGAATCTCTTCTTCAGCACAGATGTGGAGAAACATGTACATGAGGCTGATATAGTTTTTGTTTCTGTCAACACTCCTACCAAGACTAGGGGTCTTGGAGCAGGCAAGGCTGCAGATCTTACCTACTGGGAGAGTGCAGCCCGTATGATTGCCGATGTCTCGAAATCTGACAAAATAGTTGTTGAGAAATCAACTGTTCCAGTAAAAACTGCTGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGATTGGAGGCCGGGAAACTCCAGGAGGCCAGAAGGCTATCCAAGCATTGAAGGATGTTTATGCTCATTGGGTCCCTGAAGCCAATATCATTACCACCAACTTGTGGTCCGCTGAGCTCTCAAAGTTGGCTGCCAATGCATTTTTGGCACAAAGAATCTCTTCTGTGAATGCCATGTCAGCTCTCTGTGAGGCTACAGGAGCAAACGTTTCACAGGTGGCATATGCTGTTGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365936" ref_strand="+" ref_description="SGN-E365936 [cLPT-11-F22]">
      <seq>tcattttctcgtcaaattcatctctaagagttaaaaaagaagaaagaaaaatggtgaagatttgctgcataggagctggatatgttggtggccccaccatggcagtcattgcactcaaatgccccaagattgaagtggtcgttgttgatatctctgtacctcgcattactgcctggaacagtgacacacttcccatctatgagccaggccttgacgatgtggtcaagcaatgccgaggcaagaatctcttcttcagcacagatgtggagaaacatgtacatgaggctgatatagtttttgtttctgtcaacactcctaccaagactaggggtcttggagcaggcaaggctgcagatcttacctactgggagagtgcagcccgtatgattgccgatgtctcgaaatctgacaaaatagttgttgagaaatcaactgttccagtaaaaactgctgaggcaattgaaaagattttgacccacaacagcaagggaattaacttccagatcctctcaaaccctgaatttcttgcagagggtactgcaatcgacgacctctttaaacctgacagggttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="85389" stop="86546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85699" g_stop="86246" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="576" r_length="548" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E365936" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85699" e_stop="86246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAAAAAAGAAGAAAGAAAAATGGTGAAGATTTGCTGCATAGGAGCTGGATATGTTGGTGGCCCCACCATGGCAGTCATTGCACTCAAATGCCCCAAGATTGAAGTGGTCGTTGTTGATATCTCTGTACCTCGCATTACTGCCTGGAACAGTGACACACTTCCCATCTATGAGCCAGGCCTTGACGATGTGGTCAAGCAATGCCGAGGCAAGAATCTCTTCTTCAGCACAGATGTGGAGAAACATGTGCACGAGGCTGATATAGTTTTTGTTTCTGTCAACACTCCTACCAAGACTAGGGGTCTTGGAGCAGGCAAGGCTGCAGATCTTACCTACTGGGAGAGTGCAGCCCGTATGATTGCCGATGTCTCGAAATCTGACAAAATAGTTGTTGAGAAATCAACTGTTCCAGTAAAAACTGCTGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGA</genome_strand>
        <mrna_strand>AGTTAAAAAAGAAGAAAGAAAAATGGTGAAGATTTGCTGCATAGGAGCTGGATATGTTGGTGGCCCCACCATGGCAGTCATTGCACTCAAATGCCCCAAGATTGAAGTGGTCGTTGTTGATATCTCTGTACCTCGCATTACTGCCTGGAACAGTGACACACTTCCCATCTATGAGCCAGGCCTTGACGATGTGGTCAAGCAATGCCGAGGCAAGAATCTCTTCTTCAGCACAGATGTGGAGAAACATGTACATGAGGCTGATATAGTTTTTGTTTCTGTCAACACTCCTACCAAGACTAGGGGTCTTGGAGCAGGCAAGGCTGCAGATCTTACCTACTGGGAGAGTGCAGCCCGTATGATTGCCGATGTCTCGAAATCTGACAAAATAGTTGTTGAGAAATCAACTGTTCCAGTAAAAACTGCTGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367565" ref_strand="+" ref_description="SGN-E367565 [cLPT-7-B4]">
      <seq>agttaaaaaagaagaaagaaaaatggcgaatatttgctgcatatgagctggatatgttggtggccccaccatggcagtcattgcactcaaatgccccaagattgaagtggtcgttgttgatatctctgtacctcgcattactgcctggaacagtgacacacttcccatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="85399" stop="86169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85699" g_stop="85869" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E367565" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>171</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85699" e_stop="85869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAAAAAAGAAGAAAGAAAAATGGTGAAGATTTGCTGCATAGGAGCTGGATATGTTGGTGGCCCCACCATGGCAGTCATTGCACTCAAATGCCCCAAGATTGAAGTGGTCGTTGTTGATATCTCTGTACCTCGCATTACTGCCTGGAACAGTGACACACTTCCCATCTA</genome_strand>
        <mrna_strand>AGTTAAAAAAGAAGAAAGAAAAATGGCGAATATTTGCTGCATATGAGCTGGATATGTTGGTGGCCCCACCATGGCAGTCATTGCACTCAAATGCCCCAAGATTGAAGTGGTCGTTGTTGATATCTCTGTACCTCGCATTACTGCCTGGAACAGTGACACACTTCCCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367132" ref_strand="+" ref_description="SGN-E367132 [cLPT-5-J1]">
      <seq>ttgatatctctgtacctcgcattactgcctggaacagtgacacacttcccatctatgagccaggccttgacgatgtggtcaagcaatgccgaggcaagaatctcttcttcagcacagatgtggagaaacatgtacatgaggctgatatagtttttgtttctgtcaacactcctaccaagactaggggtcttggagcaggcaaggctgcagatcttacctactgggagagtgcagcccgtatgattgccgatgtctcgaaatctgacaaaatagttgttgagaaatcaactgttccagtaaaaactgctgaggcaattgaaaagattttgacccacaacagcaagggaattaacttccagatcctctcaaaccctgaatttcttgcagagggtactgcaatcgacgacctctttaaacctgacagggttctgattggaggccgggaaactccaggaggccagaaggctatccaagcattgaaggatgtttatgctcattgggtccctgaagccaatatcattaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="85515" stop="86640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85815" g_stop="86340" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E367132" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85815" e_stop="86340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATATCTCTGTACCTCGCATTACTGCCTGGAACAGTGACACACTTCCCATCTATGAGCCAGGCCTTGACGATGTGGTCAAGCAATGCCGAGGCAAGAATCTCTTCTTCAGCACAGATGTGGAGAAACATGTGCACGAGGCTGATATAGTTTTTGTTTCTGTCAACACTCCTACCAAGACTAGGGGTCTTGGAGCAGGCAAGGCTGCAGATCTTACCTACTGGGAGAGTGCAGCCCGTATGATTGCCGATGTCTCGAAATCTGACAAAATAGTTGTTGAGAAATCAACTGTTCCAGTAAAAACTGCTGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGATTGGAGGCCGGGAAACTCCAGGAGGCCAGAAGGCTATCCAAGCATTGAAGGATGTTTATGCTCATTGGGTCCCTGAAGCCAATATCATTACCAC</genome_strand>
        <mrna_strand>TTGATATCTCTGTACCTCGCATTACTGCCTGGAACAGTGACACACTTCCCATCTATGAGCCAGGCCTTGACGATGTGGTCAAGCAATGCCGAGGCAAGAATCTCTTCTTCAGCACAGATGTGGAGAAACATGTACATGAGGCTGATATAGTTTTTGTTTCTGTCAACACTCCTACCAAGACTAGGGGTCTTGGAGCAGGCAAGGCTGCAGATCTTACCTACTGGGAGAGTGCAGCCCGTATGATTGCCGATGTCTCGAAATCTGACAAAATAGTTGTTGAGAAATCAACTGTTCCAGTAAAAACTGCTGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGATTGGAGGCCGGGAAACTCCAGGAGGCCAGAAGGCTATCCAAGCATTGAAGGATGTTTATGCTCATTGGGTCCCTGAAGCCAATATCATTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370821" ref_strand="+" ref_description="SGN-E370821 [TUS-27-D3](-)">
      <seq>cttgtttccagtattcagcaacctcaggcagaccattgcactcgcaaatgtaaaccaggttcagaatatccttctggaagcaagatccaccaaaaccaacacttgcgttgaggaacttgggaccaattctcgagtccttaccaacagcatatgccacctgtgaaacgtttgctcctgtagcctcacagagagctgacatggcattcacagaagagattctttgtgccaaaaatgcattggcagccaactttgagagctcagcggaccacaagttggtggtaatgatattggcttcagggacccaatgagcataaacatccttcaatgcttggatagccttctggcctcctggagtttcccggcctccaatcagaaccctgtcaggtttaaagaggtcgtcgattgcagtaccctctgcaagaaattcagggtttgagaggatctggaagttaattcccttgctgttgtgggtcaaaatcttttcaattgcctcagcagtttttactggaacagttgatttctcaacaactattttgtcagatttcgagacatcggcaatcatacgggctgcactctcccagtaggtaagatctgcagccttgcctgctccaagacccctagtcttggtaggagtgttgacagaaacaaaaactatatcagcctcgtgcacatgtttctccacatctgtgctgaagaagagattcttgcctcggcattgcttgacgagaactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="86915" stop="85586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86615" g_stop="85883" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E370821" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86615" e_stop="85883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTTCCAGTATTCAGCAACCTCAGGCAGACCATTGCACTCGCAAATGTAAACCAGGTTCAGAATATCCTTCTGGAAGCAAGATCCACCAAAACCAACACTTGCGTTGAGGAACTTGGGACCAATTCTCGAGTCCTTACCAACAGCATATGCCACCTGTGAAACGTTTGCTCCTGTAGCCTCACAGAGAGCTGACATGGCATTCACAGAAGAGATTCTTTGTGCCAAAAATGCATTGGCAGCCAACTTTGAGAGCTCAGCGGACCACAAGTTGGTGGTAATGATATTGGCTTCAGGGACCCAATGAGCATAAACATCCTTCAATGCTTGGATAGCCTTCTGGCCTCCTGGAGTTTCCCGGCCTCCAATCAGAACCCTGTCAGGTTTAAAGAGGTCGTCGATTGCAGTACCCTCTGCAAGAAATTCAGGGTTTGAGAGGATCTGGAAGTTAATTCCCTTGCTGTTGTGGGTCAAAATCTTTTCAATTGCCTCAGCAGTTTTTACTGGAACAGTTGATTTCTCAACAACTATTTTGTCAGATTTCGAGACATCGGCAATCATACGGGCTGCACTCTCCCAGTAGGTAAGATCTGCAGCCTTGCCTGCTCCAAGACCCCTAGTCTTGGTAGGAGTGTTGACAGAAACAAAAACTATATCAGCCTCGTGCACATGTTTCTCCACATCTGTGCTGAAGAAGAGATTCTTGCCTCGGCATTGCTTGACCACATCGTC</genome_strand>
        <mrna_strand>CTTGTTTCCAGTATTCAGCAACCTCAGGCAGACCATTGCACTCGCAAATGTAAACCAGGTTCAGAATATCCTTCTGGAAGCAAGATCCACCAAAACCAACACTTGCGTTGAGGAACTTGGGACCAATTCTCGAGTCCTTACCAACAGCATATGCCACCTGTGAAACGTTTGCTCCTGTAGCCTCACAGAGAGCTGACATGGCATTCACAGAAGAGATTCTTTGTGCCAAAAATGCATTGGCAGCCAACTTTGAGAGCTCAGCGGACCACAAGTTGGTGGTAATGATATTGGCTTCAGGGACCCAATGAGCATAAACATCCTTCAATGCTTGGATAGCCTTCTGGCCTCCTGGAGTTTCCCGGCCTCCAATCAGAACCCTGTCAGGTTTAAAGAGGTCGTCGATTGCAGTACCCTCTGCAAGAAATTCAGGGTTTGAGAGGATCTGGAAGTTAATTCCCTTGCTGTTGTGGGTCAAAATCTTTTCAATTGCCTCAGCAGTTTTTACTGGAACAGTTGATTTCTCAACAACTATTTTGTCAGATTTCGAGACATCGGCAATCATACGGGCTGCACTCTCCCAGTAGGTAAGATCTGCAGCCTTGCCTGCTCCAAGACCCCTAGTCTTGGTAGGAGTGTTGACAGAAACAAAAACTATATCAGCCTCGTGCACATGTTTCTCCACATCTGTGCTGAAGAAGAGATTCTTGCCTCGGCATTGCTTGACGAGAACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706274" ref_strand="+" ref_description="SGN-E706274 [FA29CA08]">
      <seq>tgcagatcttacctactgggagagtgcagcccgtatgattgccgatgtctcgaaatctgacaaaatagttgttgagaaatcaactgttccagtaaaaactgctgaggcaattgaaaagattttgacccacaacagcaagggaattaacttccagatcctctcaaaccctgaatttcttgcagagggtactgcaatcgacgacctctttaaacctgacagggttctgattggaggccgggaaactccaggaggccagaaggctatccaagcattgaaggatgtttatgctcattgggtccctgaagccaatatcattaccaccaacttgtggtccgctgagctctcaaagttggctgccaatgcatttttggcacaaagaatctcttctgtgaatgccatgtcagctctctgtgaggctacaggagcaaacgtttcacaggtggcatatgctgttggtaaggactcgagaattggtcccaagttcctcaacgcaagtgttggttttggtggatcttgcttccagaaggatattctgaacctggtttacatttgcgagtgcaatggtctgcctgaggttgctgaatactggaaacaagttatcaagattaatgactatcagaagagtcgttttgtcaatcgtgttgttgcctctatgttcaacacagtgtcaaacaagaaagttgcaattctaggttttgctttcaagaaggacactggcgatactcgagagacccctgcaattgatgtatgcaagggactagtgggggataatgctaaattgagcatatacgatcctcaggtgcaggaggaccaaatccagagggacctctccatgaagaagtttgactgggatcatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="85720" stop="87177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86020" g_stop="86877" g_length="858"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="858" r_length="858" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E706274" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86020" e_stop="86877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGATCTTACCTACTGGGAGAGTGCAGCCCGTATGATTGCCGATGTCTCGAAATCTGACAAAATAGTTGTTGAGAAATCAACTGTTCCAGTAAAAACTGCTGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGATTGGAGGCCGGGAAACTCCAGGAGGCCAGAAGGCTATCCAAGCATTGAAGGATGTTTATGCTCATTGGGTCCCTGAAGCCAATATCATTACCACCAACTTGTGGTCCGCTGAGCTCTCAAAGTTGGCTGCCAATGCATTTTTGGCACAAAGAATCTCTTCTGTGAATGCCATGTCAGCTCTCTGTGAGGCTACAGGAGCAAACGTTTCACAGGTGGCATATGCTGTTGGTAAGGACTCGAGAATTGGTCCCAAGTTCCTCAACGCAAGTGTTGGTTTTGGTGGATCTTGCTTCCAGAAGGATATTCTGAACCTGGTTTACATTTGCGAGTGCAATGGTCTGCCTGAGGTTGCTGAATACTGGAAACAAGTTATCAAGATTAATGACTATCAGAAGAGTCGTTTTGTCAATCGTGTTGTTGCCTCTATGTTCAACACAGTGTCAAACAAGAAAGTTGCAATTCTAGGTTTTGCTTTCAAGAAGGACACTGGCGATACTCGAGAGACCCCTGCAATTGATGTATGCAAGGGACTAGTGGGGGATAATGCTAAATTGAGCATATACGATCCTCAGGTGCAGGAGGACCAAATCCAGAGGGACCTCTCCATGAAGAAGTTTGACTGGGATCATCC</genome_strand>
        <mrna_strand>TGCAGATCTTACCTACTGGGAGAGTGCAGCCCGTATGATTGCCGATGTCTCGAAATCTGACAAAATAGTTGTTGAGAAATCAACTGTTCCAGTAAAAACTGCTGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGATTGGAGGCCGGGAAACTCCAGGAGGCCAGAAGGCTATCCAAGCATTGAAGGATGTTTATGCTCATTGGGTCCCTGAAGCCAATATCATTACCACCAACTTGTGGTCCGCTGAGCTCTCAAAGTTGGCTGCCAATGCATTTTTGGCACAAAGAATCTCTTCTGTGAATGCCATGTCAGCTCTCTGTGAGGCTACAGGAGCAAACGTTTCACAGGTGGCATATGCTGTTGGTAAGGACTCGAGAATTGGTCCCAAGTTCCTCAACGCAAGTGTTGGTTTTGGTGGATCTTGCTTCCAGAAGGATATTCTGAACCTGGTTTACATTTGCGAGTGCAATGGTCTGCCTGAGGTTGCTGAATACTGGAAACAAGTTATCAAGATTAATGACTATCAGAAGAGTCGTTTTGTCAATCGTGTTGTTGCCTCTATGTTCAACACAGTGTCAAACAAGAAAGTTGCAATTCTAGGTTTTGCTTTCAAGAAGGACACTGGCGATACTCGAGAGACCCCTGCAATTGATGTATGCAAGGGACTAGTGGGGGATAATGCTAAATTGAGCATATACGATCCTCAGGTGCAGGAGGACCAAATCCAGAGGGACCTCTCCATGAAGAAGTTTGACTGGGATCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E287502" ref_strand="+" ref_description="SGN-E287502 [cLES-9-I4]">
      <seq>gaaatcaactgttcctgtcaaaactgccgaggcaattgaaaagattttgacccacaacagcaagggcattaacttccagatcctctcaaaccctgagttccttgcagaagggaccgctatcgaagacctttttaaacctgacagggtcctaatcggaggtcgggaaactccaggggggcagaaggctatccaagcattgaaggatgtttatgcccaatgggtccctgaagaacgcatcctcaccaccaatttgtggtcagctgagctctcaaaattggctgccaatgcatttttggcacaaagaatctcttctgtgaatgccatgtcagctctttgagaggctactggagcaaatgtctcacaggtagcgtatgctgttggaaaggactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="85795" stop="86786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86095" g_stop="86486" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E287502" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86095" e_stop="86486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCAACTGTTCCAGTAAAAACTGCTGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGATTGGAGGCCGGGAAACTCCAGGAGGCCAGAAGGCTATCCAAGCATTGAAGGATGTTTATGCTCATTGGGTCCCTGAAGCCAATATCATTACCACCAACTTGTGGTCCGCTGAGCTCTCAAAGTTGGCTGCCAATGCATTTTTGGCACAAAGAATCTCTTCTGTGAATGCCATGTCAGCTCTCTGTGAGGCTACAGGAGCAAACGTTTCACAGGTGGCATATGCTGTTGGTAAGGACTCGA</genome_strand>
        <mrna_strand>GAAATCAACTGTTCCTGTCAAAACTGCCGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGCATTAACTTCCAGATCCTCTCAAACCCTGAGTTCCTTGCAGAAGGGACCGCTATCGAAGACCTTTTTAAACCTGACAGGGTCCTAATCGGAGGTCGGGAAACTCCAGGGGGGCAGAAGGCTATCCAAGCATTGAAGGATGTTTATGCCCAATGGGTCCCTGAAGAACGCATCCTCACCACCAATTTGTGGTCAGCTGAGCTCTCAAAATTGGCTGCCAATGCATTTTTGGCACAAAGAATCTCTTCTGTGAATGCCATGTCAGCTCTTTGAGAGGCTACTGGAGCAAATGTCTCACAGGTAGCGTATGCTGTTGGAAAGGACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701440" ref_strand="+" ref_description="SGN-E701440 [FA15DH11]">
      <seq>cgagggtaaaaactgctgaggcaattgaaaagattttgacccacaacagcaagggaattaacttccagatcctctcaaaccctgaatttcttgcagagggtactgcaatcgacgacctctttaaacctgacagggttctgattggaggccgggaaactccaggaggccagaaggctatccaagcattgaaggatgtttatgctcattgggtccctgaagccaatatcattaccaccaacttgtggtccgctgagctctcaaagttggctgccaatgcatttttggcacaaagaatctcttctgtgaatgccatgtcagctctctgtgaggctacaggagcaaacgtttcacaggtggcatatgctgttggtaaggactcgagaattggtcccaagttcctcaacgcaagtgttggttttggtggatcttgcttccagaaggatattctgaacctggtttacatttgcgagtgcaatggtctgcctgaggttgctgaatactggaaacaagttatcaagattaatgactatcagaagagtcgttttgtcaatcgtgttgttgcctctatgttcaacacagtgtcaaacaagaaagttgcaattctaggttttgctttcaagaaggacactggcgatactcgagagacccctgcaattgatgtatgcaagggactagtgggggataatgctaaattgagcatatacgatcctcaggtgcaggaggaccaaatccagagggacctctccatgaagaagtttgactgggatcatccccttcacctccaaccaatgagtcccacatccgtgaaacaacaagtcaatgttactatggatgccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="85811" stop="87243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86106" g_stop="86943" g_length="838"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="838" r_length="838" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E701440" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86106" e_stop="86943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGTAAAAACTGCTGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGATTGGAGGCCGGGAAACTCCAGGAGGCCAGAAGGCTATCCAAGCATTGAAGGATGTTTATGCTCATTGGGTCCCTGAAGCCAATATCATTACCACCAACTTGTGGTCCGCTGAGCTCTCAAAGTTGGCTGCCAATGCATTTTTGGCACAAAGAATCTCTTCTGTGAATGCCATGTCAGCTCTCTGTGAGGCTACAGGAGCAAACGTTTCACAGGTGGCATATGCTGTTGGTAAGGACTCGAGAATTGGTCCCAAGTTCCTCAACGCAAGTGTTGGTTTTGGTGGATCTTGCTTCCAGAAGGATATTCTGAACCTGGTTTACATTTGCGAGTGCAATGGTCTGCCTGAGGTTGCTGAATACTGGAAACAAGTTATCAAGATTAATGACTATCAGAAGAGTCGTTTTGTCAATCGTGTTGTTGCCTCTATGTTCAACACAGTGTCAAACAAGAAAGTTGCAATTCTAGGTTTTGCTTTCAAGAAGGACACTGGCGATACTCGAGAGACCCCTGCAATTGATGTATGCAAGGGACTAGTGGGGGATAATGCTAAATTGAGCATATACGATCCTCAGGTGCAGGAGGACCAAATCCAGAGGGACCTCTCCATGAAGAAGTTTGACTGGGATCATCCCCTTCACCTCCAACCAATGAGTCCCACATCCGTGAAACAACAAGTCAGTGTTACTATGGATGCCTA</genome_strand>
        <mrna_strand>CGAGGGTAAAAACTGCTGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGATTGGAGGCCGGGAAACTCCAGGAGGCCAGAAGGCTATCCAAGCATTGAAGGATGTTTATGCTCATTGGGTCCCTGAAGCCAATATCATTACCACCAACTTGTGGTCCGCTGAGCTCTCAAAGTTGGCTGCCAATGCATTTTTGGCACAAAGAATCTCTTCTGTGAATGCCATGTCAGCTCTCTGTGAGGCTACAGGAGCAAACGTTTCACAGGTGGCATATGCTGTTGGTAAGGACTCGAGAATTGGTCCCAAGTTCCTCAACGCAAGTGTTGGTTTTGGTGGATCTTGCTTCCAGAAGGATATTCTGAACCTGGTTTACATTTGCGAGTGCAATGGTCTGCCTGAGGTTGCTGAATACTGGAAACAAGTTATCAAGATTAATGACTATCAGAAGAGTCGTTTTGTCAATCGTGTTGTTGCCTCTATGTTCAACACAGTGTCAAACAAGAAAGTTGCAATTCTAGGTTTTGCTTTCAAGAAGGACACTGGCGATACTCGAGAGACCCCTGCAATTGATGTATGCAAGGGACTAGTGGGGGATAATGCTAAATTGAGCATATACGATCCTCAGGTGCAGGAGGACCAAATCCAGAGGGACCTCTCCATGAAGAAGTTTGACTGGGATCATCCCCTTCACCTCCAACCAATGAGTCCCACATCCGTGAAACAACAAGTCAATGTTACTATGGATGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700501" ref_strand="+" ref_description="SGN-E700501 [FA13BC03]">
      <seq>acttgtaaagattttgacccacaacagcaagggaattaacttccagatcctctcaaaccctgaatttcttgcagagggtactgcaatcgacgacctctttaaacctgacagggttctgattggaggccgggaaactccaggaggccagaaggctatccaagcattgaaggatgtttatgctcattgggtccctgaagccaatatcattaccaccaacttgtggtccgctgagctctcaaagttggctgccaatgcatttttggcacaaagaatctcttctgtgaatgccatgtcagctctctgtgaggctacaggagcaaacgtttcacaggtggcatatgctgttggtaaggactcgagaattggtcccaagttcctcaacgcaagtgttggttttggtggatcttgcttccagaaggatattctgaacctggtttacatttgcgagtgcaatggtctgcctgaggttgctgaatactggaaacaagttatcaagattaatgactatcagaagagtcgttttgtcaatcgtgttgttgcctctatgttcaacacagtgtcaaacaagaaagttgcaattctaggttttgctttcaagaaggacactggcgatactcgagagacccctgcaattgatgtatgcaagggactagtgggggataatgctaaattgagcatatacgatcctcaggtgcaggaggaccaaatccagagggacctctccatgaagaagtttgactgggatcatccccttcacctccaaccaatgagtcccacatccgtgaaacaacaagtcagtgttactatggatgcctacggtgcaacaaaagatgcccatgctgtctgcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="85830" stop="87279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86128" g_stop="86979" g_length="852"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="852" r_length="852" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E700501" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86128" e_stop="86979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGATTGGAGGCCGGGAAACTCCAGGAGGCCAGAAGGCTATCCAAGCATTGAAGGATGTTTATGCTCATTGGGTCCCTGAAGCCAATATCATTACCACCAACTTGTGGTCCGCTGAGCTCTCAAAGTTGGCTGCCAATGCATTTTTGGCACAAAGAATCTCTTCTGTGAATGCCATGTCAGCTCTCTGTGAGGCTACAGGAGCAAACGTTTCACAGGTGGCATATGCTGTTGGTAAGGACTCGAGAATTGGTCCCAAGTTCCTCAACGCAAGTGTTGGTTTTGGTGGATCTTGCTTCCAGAAGGATATTCTGAACCTGGTTTACATTTGCGAGTGCAATGGTCTGCCTGAGGTTGCTGAATACTGGAAACAAGTTATCAAGATTAATGACTATCAGAAGAGTCGTTTTGTCAATCGTGTTGTTGCCTCTATGTTCAACACAGTGTCAAACAAGAAAGTTGCAATTCTAGGTTTTGCTTTCAAGAAGGACACTGGCGATACTCGAGAGACCCCTGCAATTGATGTATGCAAGGGACTAGTGGGGGATAATGCTAAATTGAGCATATACGATCCTCAGGTGCAGGAGGACCAAATCCAGAGGGACCTCTCCATGAAGAAGTTTGACTGGGATCATCCCCTTCACCTCCAACCAATGAGTCCCACATCCGTGAAACAACAAGTCAGTGTTACTATGGATGCCTACGGTGCAACAAAAGATGCCCATGCTGTCTGCATTCT</genome_strand>
        <mrna_strand>ACTTGTAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGATTGGAGGCCGGGAAACTCCAGGAGGCCAGAAGGCTATCCAAGCATTGAAGGATGTTTATGCTCATTGGGTCCCTGAAGCCAATATCATTACCACCAACTTGTGGTCCGCTGAGCTCTCAAAGTTGGCTGCCAATGCATTTTTGGCACAAAGAATCTCTTCTGTGAATGCCATGTCAGCTCTCTGTGAGGCTACAGGAGCAAACGTTTCACAGGTGGCATATGCTGTTGGTAAGGACTCGAGAATTGGTCCCAAGTTCCTCAACGCAAGTGTTGGTTTTGGTGGATCTTGCTTCCAGAAGGATATTCTGAACCTGGTTTACATTTGCGAGTGCAATGGTCTGCCTGAGGTTGCTGAATACTGGAAACAAGTTATCAAGATTAATGACTATCAGAAGAGTCGTTTTGTCAATCGTGTTGTTGCCTCTATGTTCAACACAGTGTCAAACAAGAAAGTTGCAATTCTAGGTTTTGCTTTCAAGAAGGACACTGGCGATACTCGAGAGACCCCTGCAATTGATGTATGCAAGGGACTAGTGGGGGATAATGCTAAATTGAGCATATACGATCCTCAGGTGCAGGAGGACCAAATCCAGAGGGACCTCTCCATGAAGAAGTTTGACTGGGATCATCCCCTTCACCTCCAACCAATGAGTCCCACATCCGTGAAACAACAAGTCAGTGTTACTATGGATGCCTACGGTGCAACAAAAGATGCCCATGCTGTCTGCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330015" ref_strand="+" ref_description="SGN-E330015 [cTOD-5-J6]">
      <seq>aagggaattaacttccagatcctctcaaaccctgaatttcttgcagagggtactgcaatcgacgacctctttaaacctgacagggttctgattggaggccgggaaactccaggaggccagaaggctatccaagcattgaaggatgtttatgctcattgggtccctgaagccaatatcattaccaccaacttgtggtccgctgagctctcaaagttggctgccaatgcatttttggcacaaagaatctcttctgtgaatgccatgtcagctctctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="85856" stop="86732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86156" g_stop="86432" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E330015" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86156" e_stop="86432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGATTGGAGGCCGGGAAACTCCAGGAGGCCAGAAGGCTATCCAAGCATTGAAGGATGTTTATGCTCATTGGGTCCCTGAAGCCAATATCATTACCACCAACTTGTGGTCCGCTGAGCTCTCAAAGTTGGCTGCCAATGCATTTTTGGCACAAAGAATCTCTTCTGTGAATGCCATGTCAGCTCTCTGTG</genome_strand>
        <mrna_strand>AAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGATTGGAGGCCGGGAAACTCCAGGAGGCCAGAAGGCTATCCAAGCATTGAAGGATGTTTATGCTCATTGGGTCCCTGAAGCCAATATCATTACCACCAACTTGTGGTCCGCTGAGCTCTCAAAGTTGGCTGCCAATGCATTTTTGGCACAAAGAATCTCTTCTGTGAATGCCATGTCAGCTCTCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265244" ref_strand="+" ref_description="SGN-E265244 [cLEI-9-A15]">
      <seq>tgtttatgctcattgggtccctgaagccaatatcattaccaccaacttgtggtccgctgagctctcaaagttggctgccaatgcatttttggcacaaagaatctcttctgtgaatgccatgtcagctctctgtgaggctacaggagcaaacgtttcacaggtggcatatgctgttggtaaggactcgagaattggtcccaagttcctcaacgcaagtgttggttttggtggatcttgcttccagaaggatattctgaacctggtttacatttgcgagtgcaatggtctgcctgaagttgctgaatactggaaacaagttatcaagattaatgactatcagaagagtcgttttgtcaaatcgggtggtggcttttttggtcaacacagtgtcaaacaagaaagttgcaattctaggttttgctttcaagaaggacactggcgatactcgagagacccctgcaattgatgtatgcaagggactagtgggggataatgctaaattgagcatatacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="85999" stop="87112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86299" g_stop="86812" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E265244" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86299" e_stop="86812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTATGCTCATTGGGTCCCTGAAGCCAATATCATTACCACCAACTTGTGGTCCGCTGAGCTCTCAAAGTTGGCTGCCAATGCATTTTTGGCACAAAGAATCTCTTCTGTGAATGCCATGTCAGCTCTCTGTGAGGCTACAGGAGCAAACGTTTCACAGGTGGCATATGCTGTTGGTAAGGACTCGAGAATTGGTCCCAAGTTCCTCAACGCAAGTGTTGGTTTTGGTGGATCTTGCTTCCAGAAGGATATTCTGAACCTGGTTTACATTTGCGAGTGCAATGGTCTGCCTGAGGTTGCTGAATACTGGAAACAAGTTATCAAGATTAATGACTATCAGAAGAGTCGTTTTGTC-AATCGTGTTGTTGCCTCTATGTTCAACACAGTGTCAAACAAGAAAGTTGCAATTCTAGGTTTTGCTTTCAAGAAGGACACTGGCGATACTCGAGAGACCCCTGCAATTGATGTATGCAAGGGACTAGTGGGGGATAATGCTAAATTGAGCATATACGAT</genome_strand>
        <mrna_strand>TGTTTATGCTCATTGGGTCCCTGAAGCCAATATCATTACCACCAACTTGTGGTCCGCTGAGCTCTCAAAGTTGGCTGCCAATGCATTTTTGGCACAAAGAATCTCTTCTGTGAATGCCATGTCAGCTCTCTGTGAGGCTACAGGAGCAAACGTTTCACAGGTGGCATATGCTGTTGGTAAGGACTCGAGAATTGGTCCCAAGTTCCTCAACGCAAGTGTTGGTTTTGGTGGATCTTGCTTCCAGAAGGATATTCTGAACCTGGTTTACATTTGCGAGTGCAATGGTCTGCCTGAAGTTGCTGAATACTGGAAACAAGTTATCAAGATTAATGACTATCAGAAGAGTCGTTTTGTCAAATCGGGTGGTGGCTTTTTTGGTCAACACAGTGTCAAACAAGAAAGTTGCAATTCTAGGTTTTGCTTTCAAGAAGGACACTGGCGATACTCGAGAGACCCCTGCAATTGATGTATGCAAGGGACTAGTGGGGGATAATGCTAAATTGAGCATATACGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319519" ref_strand="+" ref_description="SGN-E319519 [cTOB-15-A16]">
      <seq>aacgcatcctcaccaccaatttgtggtcagctgagctctcaaaattggctgccaatgcatttttggcacaaagaatctcttctgtgaatgccatgtcagctctttgtgaggctactggagcaaatgtctcacaggtagcgtatgctgttggaaaggactcgaggattggtcccaagttccttaatgccagtgttggttttggtggctcttgcttccagaaggatattctgaatctggtttacatttgtgagtgcaatggtcttccagaggtagctgaatactggaaacaggttatcaagatcaatgactatcagaagaatcgttttgtcaaccgcgttgttgcctccatgttcaacacagtatcaggcaagaaagtcgccattttaggtttcgctttcaagaaggatactggtgatactcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="86030" stop="87047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86325" g_stop="86747" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E319519" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86325" e_stop="86747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATATCATTACCACCAACTTGTGGTCCGCTGAGCTCTCAAAGTTGGCTGCCAATGCATTTTTGGCACAAAGAATCTCTTCTGTGAATGCCATGTCAGCTCTCTGTGAGGCTACAGGAGCAAACGTTTCACAGGTGGCATATGCTGTTGGTAAGGACTCGAGAATTGGTCCCAAGTTCCTCAACGCAAGTGTTGGTTTTGGTGGATCTTGCTTCCAGAAGGATATTCTGAACCTGGTTTACATTTGCGAGTGCAATGGTCTGCCTGAGGTTGCTGAATACTGGAAACAAGTTATCAAGATTAATGACTATCAGAAGAGTCGTTTTGTCAATCGTGTTGTTGCCTCTATGTTCAACACAGTGTCAAACAAGAAAGTTGCAATTCTAGGTTTTGCTTTCAAGAAGGACACTGGCGATACTCGAG</genome_strand>
        <mrna_strand>AACGCATCCTCACCACCAATTTGTGGTCAGCTGAGCTCTCAAAATTGGCTGCCAATGCATTTTTGGCACAAAGAATCTCTTCTGTGAATGCCATGTCAGCTCTTTGTGAGGCTACTGGAGCAAATGTCTCACAGGTAGCGTATGCTGTTGGAAAGGACTCGAGGATTGGTCCCAAGTTCCTTAATGCCAGTGTTGGTTTTGGTGGCTCTTGCTTCCAGAAGGATATTCTGAATCTGGTTTACATTTGTGAGTGCAATGGTCTTCCAGAGGTAGCTGAATACTGGAAACAGGTTATCAAGATCAATGACTATCAGAAGAATCGTTTTGTCAACCGCGTTGTTGCCTCCATGTTCAACACAGTATCAGGCAAGAAAGTCGCCATTTTAGGTTTCGCTTTCAAGAAGGATACTGGTGATACTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E361518" ref_strand="+" ref_description="SGN-E361518 [cLPP-6-G24]">
      <seq>tcagctctctgtgaggctacaggagcaaacgtttcacaggtggcatatgctgttggtaaggactcgagaattggtcccaagttcctcaacgctagtgttggttttggtggatcttgcttccagaaggatattctgaacctggtttacatttgcgagtgcaatggtctgcctgaggttgctgaatactggaaacaagttatcaagattaatgactatcagaagagtcgttttgtcaatcgtgttgttgcctctatgttcaacacagtgtcaaacaagaaagttgcaattctaggttttgctttcaagaaggacactggcgatactcgagagacccctgcaattgatgtatgcaagggactagtgggggataatgctaaattgagcatatacgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="86120" stop="87114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86420" g_stop="86814" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E361518" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86420" e_stop="86814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTCTCTGTGAGGCTACAGGAGCAAACGTTTCACAGGTGGCATATGCTGTTGGTAAGGACTCGAGAATTGGTCCCAAGTTCCTCAACGCAAGTGTTGGTTTTGGTGGATCTTGCTTCCAGAAGGATATTCTGAACCTGGTTTACATTTGCGAGTGCAATGGTCTGCCTGAGGTTGCTGAATACTGGAAACAAGTTATCAAGATTAATGACTATCAGAAGAGTCGTTTTGTCAATCGTGTTGTTGCCTCTATGTTCAACACAGTGTCAAACAAGAAAGTTGCAATTCTAGGTTTTGCTTTCAAGAAGGACACTGGCGATACTCGAGAGACCCCTGCAATTGATGTATGCAAGGGACTAGTGGGGGATAATGCTAAATTGAGCATATACGATCC</genome_strand>
        <mrna_strand>TCAGCTCTCTGTGAGGCTACAGGAGCAAACGTTTCACAGGTGGCATATGCTGTTGGTAAGGACTCGAGAATTGGTCCCAAGTTCCTCAACGCTAGTGTTGGTTTTGGTGGATCTTGCTTCCAGAAGGATATTCTGAACCTGGTTTACATTTGCGAGTGCAATGGTCTGCCTGAGGTTGCTGAATACTGGAAACAAGTTATCAAGATTAATGACTATCAGAAGAGTCGTTTTGTCAATCGTGTTGTTGCCTCTATGTTCAACACAGTGTCAAACAAGAAAGTTGCAATTCTAGGTTTTGCTTTCAAGAAGGACACTGGCGATACTCGAGAGACCCCTGCAATTGATGTATGCAAGGGACTAGTGGGGGATAATGCTAAATTGAGCATATACGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E361521" ref_strand="+" ref_description="SGN-E361521 [cLPP-6-I8]">
      <seq>ctctctgtgaggctacaggagcaaacgtttcacaggtggcatatgctgttggtaaggactcgagaattggtcccaagttcctcaacgctagtgttggttttggtggatcttgcttccagaaggatattctgaacctggtttacatttgcgagtgcaatggtctgcctgaggttgctgaatactggaaacaagttatcaagattaatgactatcagaagagtcgttttgtcaatcgtgttgttgcctctatgttcaacacagtgtcaaacaagaaagttgcaattctaggttttgctttcaagaaggacactggcgatactcgagagacccctgcaattgatgtatgcaagggactagtgggggataatgcttaattgagcatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="86124" stop="87108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86424" g_stop="86808" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E361521" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86424" e_stop="86808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTGTGAGGCTACAGGAGCAAACGTTTCACAGGTGGCATATGCTGTTGGTAAGGACTCGAGAATTGGTCCCAAGTTCCTCAACGCAAGTGTTGGTTTTGGTGGATCTTGCTTCCAGAAGGATATTCTGAACCTGGTTTACATTTGCGAGTGCAATGGTCTGCCTGAGGTTGCTGAATACTGGAAACAAGTTATCAAGATTAATGACTATCAGAAGAGTCGTTTTGTCAATCGTGTTGTTGCCTCTATGTTCAACACAGTGTCAAACAAGAAAGTTGCAATTCTAGGTTTTGCTTTCAAGAAGGACACTGGCGATACTCGAGAGACCCCTGCAATTGATGTATGCAAGGGACTAGTGGGGGATAATGCTAAATTGAGCATATA</genome_strand>
        <mrna_strand>CTCTCTGTGAGGCTACAGGAGCAAACGTTTCACAGGTGGCATATGCTGTTGGTAAGGACTCGAGAATTGGTCCCAAGTTCCTCAACGCTAGTGTTGGTTTTGGTGGATCTTGCTTCCAGAAGGATATTCTGAACCTGGTTTACATTTGCGAGTGCAATGGTCTGCCTGAGGTTGCTGAATACTGGAAACAAGTTATCAAGATTAATGACTATCAGAAGAGTCGTTTTGTCAATCGTGTTGTTGCCTCTATGTTCAACACAGTGTCAAACAAGAAAGTTGCAATTCTAGGTTTTGCTTTCAAGAAGGACACTGGCGATACTCGAGAGACCCCTGCAATTGATGTATGCAAGGGACTAGTGGGGGATAATGCTTAATTGAGCATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694547" ref_strand="+" ref_description="SGN-E694547 [LH_Ea04D09](-)">
      <seq>atcttgcttccagaaggatattctgaacctggtttacatttgcgagtgcaatggtctgcctgaggttgctgaatactggaaacaagttatcaagattaatgactatcagaagagtcgttttgtcaatcgtgttgttgcctctatgttcaacacagtgtcaaacaagaaagttgcaattctaggttttgctttcaagaaggacactggcgatactcgagagacccctgcaattgatgtatgcaagggactagtgggggataatgctaaattgagcatatacgatcctcaggtgcaggaggaccaaatccagagggacctctccatgaagaagtttgactgggatcatccccttcacctccaaccaatgagtcccacatccgtgaaacaacaagtcagtgttactatggatgcctacggtgcaacaaaagatgcccatgctgtctgcattctcacagagtgggatgagttcaagacccttgatttccagaagatatatgataacatgcaaaaacccgcttttgtttttgatggcaggaatgttgtgaatgctgacaagctaagagagattgggtttatcgtctactcaattggtaagcctctcgatgcctggcttaaggacatgcctgctgtcgcttaagagccttacattgctcgagtgacttgttttggtcttaaagatattagttatcagacaatcatcagctgggattctttactattttttttatacttcaatttctgtttccattttatccattgtagtcataagaccgccatcgtcactatcttgagtcacatgtaagatgttttaagggtcttttgtattgatgatacttgtttatcattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="86230" stop="87676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86530" g_stop="87372" g_length="843"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="842" r_length="842" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="847" polyA_stop="861"/>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E694547" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86530" e_stop="87372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGCTTCCAGAAGGATATTCTGAACCTGGTTTACATTTGCGAGTGCAATGGTCTGCCTGAGGTTGCTGAATACTGGAAACAAGTTATCAAGATTAATGACTATCAGAAGAGTCGTTTTGTCAATCGTGTTGTTGCCTCTATGTTCAACACAGTGTCAAACAAGAAAGTTGCAATTCTAGGTTTTGCTTTCAAGAAGGACACTGGCGATACTCGAGAGACCCCTGCAATTGATGTATGCAAGGGACTAGTGGGGGATAATGCTAAATTGAGCATATACGATCCTCAGGTGCAGGAGGACCAAATCCAGAGGGACCTCTCCATGAAGAAGTTTGACTGGGATCATCCCCTTCACCTCCAACCAATGAGTCCCACATCCGTGAAACAACAAGTCAGTGTTACTATGGATGCCTACGGTGCAACAAAAGATGCCCATGCTGTCTGCATTCTCACAGAGTGGGATGAGTTCAAGACCCTTGATTTCCAGAAGATATATGATAACATGCAAAAACCCGCTTTTGTTTTTGATGGCAGGAATGTTGTGAATGCTGAAAAGCTAAGAGAGATTGGGTTTATCGTCTACTCAATTGGTAAGCCTCTCGATGCCTGGCTTAAGGACATGCCTGCTGTCGCTTAAGAGCCTTACATTGCTCGAGTGACTTGTTTTGGTCTTAAAGATATTAGTTATCAGACAATCATCAGCTGGGATTCTTTACTATTTTTTTTACCACTTCAATTTCTGTTTCCATTTTATCCATTGTAGTCATAAGACCACCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTCTGTTTCTTTTGTATTGATGATACTTGTTTTT</genome_strand>
        <mrna_strand>ATCTTGCTTCCAGAAGGATATTCTGAACCTGGTTTACATTTGCGAGTGCAATGGTCTGCCTGAGGTTGCTGAATACTGGAAACAAGTTATCAAGATTAATGACTATCAGAAGAGTCGTTTTGTCAATCGTGTTGTTGCCTCTATGTTCAACACAGTGTCAAACAAGAAAGTTGCAATTCTAGGTTTTGCTTTCAAGAAGGACACTGGCGATACTCGAGAGACCCCTGCAATTGATGTATGCAAGGGACTAGTGGGGGATAATGCTAAATTGAGCATATACGATCCTCAGGTGCAGGAGGACCAAATCCAGAGGGACCTCTCCATGAAGAAGTTTGACTGGGATCATCCCCTTCACCTCCAACCAATGAGTCCCACATCCGTGAAACAACAAGTCAGTGTTACTATGGATGCCTACGGTGCAACAAAAGATGCCCATGCTGTCTGCATTCTCACAGAGTGGGATGAGTTCAAGACCCTTGATTTCCAGAAGATATATGATAACATGCAAAAACCCGCTTTTGTTTTTGATGGCAGGAATGTTGTGAATGCTGACAAGCTAAGAGAGATTGGGTTTATCGTCTACTCAATTGGTAAGCCTCTCGATGCCTGGCTTAAGGACATGCCTGCTGTCGCTTAAGAGCCTTACATTGCTCGAGTGACTTGTTTTGGTCTTAAAGATATTAGTTATCAGACAATCATCAGCTGGGATTCTTTACTATTTTTTTTA-TACTTCAATTTCTGTTTCCATTTTATCCATTGTAGTCATAAGACCGCCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTAAGGGTCTTTTGTATTGATGATACTTGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370822" ref_strand="+" ref_description="SGN-E370822 [TUS-27-D3]">
      <seq>caatacaaaagaaacagaaaacatcttacatgtgactcaagatagtgacgatggtggtcttatgactacaatggataaaatggaaacagaaattgaagtggtaaaaaaaatagtaaagaatcccagctgatgattgtctgataactaatatctttaagaccaaaacaagtcactcgagcaatgtaaggctcttaagcgacagcaggcatgtccttaagccaggcatcgagaggcttaccaattgagtagacgataaacccaatctctcttagcttttcagcattcacaacattcctgccatcaaaaacaaaagcgggtttttgcatgttatcatatatcttctggaaatcaagggtcttgaactcatcccactctgtgagaatgcagacagcatgggcatcttttgttgcaccgtaggcatccatagtaacactgacttgttgtttcacggatgtgggactcattggttggaggtgaaggggatgatcccagtcaaacttcttcatggagaggtccctctggatttggtcctcctgcacctgaggatcgtatatgctcaatttagcattatcccccactagtcccttgcatacatcaattgcaggggtctctcgagtatcgccagtgtccttcttgaaagcaaaacctagaattgcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="87657" stop="86398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87357" g_stop="86698" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E370822" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87357" e_stop="86698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATACAAAAGAAACAGAAAACATCTTACATGTGACTCAAGATAGTGACGATGGTGGTCTTATGACTACAATGGATAAAATGGAAACAGAAATTGAAGTGGTAAAAAAAATAGTAAAGAATCCCAGCTGATGATTGTCTGATAACTAATATCTTTAAGACCAAAACAAGTCACTCGAGCAATGTAAGGCTCTTAAGCGACAGCAGGCATGTCCTTAAGCCAGGCATCGAGAGGCTTACCAATTGAGTAGACGATAAACCCAATCTCTCTTAGCTTTTCAGCATTCACAACATTCCTGCCATCAAAAACAAAAGCGGGTTTTTGCATGTTATCATATATCTTCTGGAAATCAAGGGTCTTGAACTCATCCCACTCTGTGAGAATGCAGACAGCATGGGCATCTTTTGTTGCACCGTAGGCATCCATAGTAACACTGACTTGTTGTTTCACGGATGTGGGACTCATTGGTTGGAGGTGAAGGGGATGATCCCAGTCAAACTTCTTCATGGAGAGGTCCCTCTGGATTTGGTCCTCCTGCACCTGAGGATCGTATATGCTCAATTTAGCATTATCCCCCACTAGTCCCTTGCATACATCAATTGCAGGGGTCTCTCGAGTATCGCCAGTGTCCTTCTTGAAAGCAAAACCTAGAATTGCAACT</genome_strand>
        <mrna_strand>CAATACAAAAGAAACAGAAAACATCTTACATGTGACTCAAGATAGTGACGATGGTGGTCTTATGACTACAATGGATAAAATGGAAACAGAAATTGAAGTGGTAAAAAAAATAGTAAAGAATCCCAGCTGATGATTGTCTGATAACTAATATCTTTAAGACCAAAACAAGTCACTCGAGCAATGTAAGGCTCTTAAGCGACAGCAGGCATGTCCTTAAGCCAGGCATCGAGAGGCTTACCAATTGAGTAGACGATAAACCCAATCTCTCTTAGCTTTTCAGCATTCACAACATTCCTGCCATCAAAAACAAAAGCGGGTTTTTGCATGTTATCATATATCTTCTGGAAATCAAGGGTCTTGAACTCATCCCACTCTGTGAGAATGCAGACAGCATGGGCATCTTTTGTTGCACCGTAGGCATCCATAGTAACACTGACTTGTTGTTTCACGGATGTGGGACTCATTGGTTGGAGGTGAAGGGGATGATCCCAGTCAAACTTCTTCATGGAGAGGTCCCTCTGGATTTGGTCCTCCTGCACCTGAGGATCGTATATGCTCAATTTAGCATTATCCCCCACTAGTCCCTTGCATACATCAATTGCAGGGGTCTCTCGAGTATCGCCAGTGTCCTTCTTGAAAGCAAAACCTAGAATTGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269046" ref_strand="+" ref_description="SGN-E269046 [cLEI-16-J23]">
      <seq>caatacaaaagaaacagaaaacatcttacatgtgactcaagatagtgacgatggtggtcttatgactacaatggataaaatggaaacagaaattgaagtggtaaaaaaaatagtaaagaatcccagctgatgattgtctgataactaatatctttaagaccaaaacaagtcactcgagcaatgtaaggctcttaagcgacagcaggcatgtccttaagccaggcatcgagaggcttaccaattgagtagacgataaacccaatctctcttagcttttcagcattcacaacattcctgccatcaaaaacaaaagcgggtttttgcatgttatcatatatcttctggaaatcaagggtcttgaactcatcccactctgtgagaatgcagacagcatgggcatcttttgttgcaccgtaggcatccatagtaacactgacttgttgtttcacggatgtgggactcattggttggaggtgaaggggatgatcccagtcaaacttcttcatggagaggtccctctggatttggtcctcctgcacctgaggatcgtatatgctcaatttagcattatcccccactagtcccttgcatacatcaattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="-" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="87657" stop="86455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87357" g_stop="86755" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="-" ref_id="SGN-E269046" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87357" e_stop="86755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATACAAAAGAAACAGAAAACATCTTACATGTGACTCAAGATAGTGACGATGGTGGTCTTATGACTACAATGGATAAAATGGAAACAGAAATTGAAGTGGTAAAAAAAATAGTAAAGAATCCCAGCTGATGATTGTCTGATAACTAATATCTTTAAGACCAAAACAAGTCACTCGAGCAATGTAAGGCTCTTAAGCGACAGCAGGCATGTCCTTAAGCCAGGCATCGAGAGGCTTACCAATTGAGTAGACGATAAACCCAATCTCTCTTAGCTTTTCAGCATTCACAACATTCCTGCCATCAAAAACAAAAGCGGGTTTTTGCATGTTATCATATATCTTCTGGAAATCAAGGGTCTTGAACTCATCCCACTCTGTGAGAATGCAGACAGCATGGGCATCTTTTGTTGCACCGTAGGCATCCATAGTAACACTGACTTGTTGTTTCACGGATGTGGGACTCATTGGTTGGAGGTGAAGGGGATGATCCCAGTCAAACTTCTTCATGGAGAGGTCCCTCTGGATTTGGTCCTCCTGCACCTGAGGATCGTATATGCTCAATTTAGCATTATCCCCCACTAGTCCCTTGCATACATCAATTGCA</genome_strand>
        <mrna_strand>CAATACAAAAGAAACAGAAAACATCTTACATGTGACTCAAGATAGTGACGATGGTGGTCTTATGACTACAATGGATAAAATGGAAACAGAAATTGAAGTGGTAAAAAAAATAGTAAAGAATCCCAGCTGATGATTGTCTGATAACTAATATCTTTAAGACCAAAACAAGTCACTCGAGCAATGTAAGGCTCTTAAGCGACAGCAGGCATGTCCTTAAGCCAGGCATCGAGAGGCTTACCAATTGAGTAGACGATAAACCCAATCTCTCTTAGCTTTTCAGCATTCACAACATTCCTGCCATCAAAAACAAAAGCGGGTTTTTGCATGTTATCATATATCTTCTGGAAATCAAGGGTCTTGAACTCATCCCACTCTGTGAGAATGCAGACAGCATGGGCATCTTTTGTTGCACCGTAGGCATCCATAGTAACACTGACTTGTTGTTTCACGGATGTGGGACTCATTGGTTGGAGGTGAAGGGGATGATCCCAGTCAAACTTCTTCATGGAGAGGTCCCTCTGGATTTGGTCCTCCTGCACCTGAGGATCGTATATGCTCAATTTAGCATTATCCCCCACTAGTCCCTTGCATACATCAATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302793" ref_strand="+" ref_description="SGN-E302793 [cLEY-2-E3]">
      <seq>aagggactagtgggggataatgctaaattgagcatatacgatcctcaggtgcaggaggaccaaatccagagggacctctccatgaagaagtttgactgggatcatccccttcacctccaaccaatgagtcccacatccgtgaaacaacaagtcagtgttactatggatgcctacggtgcaacaaaagatgcccatgctgtctgcattctcacagagtgggatgagttcaagacccttgatttccagaagatatatgataacatgcaaaaacccgcttttgtttttgatggcaggaatgttgtgaatgctgaaaagctaagagagattgggtttatcgtctactcaattggtaagcctctcgatgcctggcttaaggacatgcctgctgtcgcttaagagccttacattgctcgagtgacttgttttggtcttaaagatattagttatcagacaatcatcagctgggattctttactattttttttaccacttcaatttctgtttccattttatccattgtagtcataagaccaccatcgtcactatcttgagtcacatgtaagatgttttctgtttcttttgtattgatgatacttgtttttatcatttacttgtcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="86471" stop="87690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86771" g_stop="87390" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E302793" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86771" e_stop="87390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGACTAGTGGGGGATAATGCTAAATTGAGCATATACGATCCTCAGGTGCAGGAGGACCAAATCCAGAGGGACCTCTCCATGAAGAAGTTTGACTGGGATCATCCCCTTCACCTCCAACCAATGAGTCCCACATCCGTGAAACAACAAGTCAGTGTTACTATGGATGCCTACGGTGCAACAAAAGATGCCCATGCTGTCTGCATTCTCACAGAGTGGGATGAGTTCAAGACCCTTGATTTCCAGAAGATATATGATAACATGCAAAAACCCGCTTTTGTTTTTGATGGCAGGAATGTTGTGAATGCTGAAAAGCTAAGAGAGATTGGGTTTATCGTCTACTCAATTGGTAAGCCTCTCGATGCCTGGCTTAAGGACATGCCTGCTGTCGCTTAAGAGCCTTACATTGCTCGAGTGACTTGTTTTGGTCTTAAAGATATTAGTTATCAGACAATCATCAGCTGGGATTCTTTACTATTTTTTTTACCACTTCAATTTCTGTTTCCATTTTATCCATTGTAGTCATAAGACCACCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTCTGTTTCTTTTGTATTGATGATACTTGTTTTTATCATTTACTTGTCATGT</genome_strand>
        <mrna_strand>AAGGGACTAGTGGGGGATAATGCTAAATTGAGCATATACGATCCTCAGGTGCAGGAGGACCAAATCCAGAGGGACCTCTCCATGAAGAAGTTTGACTGGGATCATCCCCTTCACCTCCAACCAATGAGTCCCACATCCGTGAAACAACAAGTCAGTGTTACTATGGATGCCTACGGTGCAACAAAAGATGCCCATGCTGTCTGCATTCTCACAGAGTGGGATGAGTTCAAGACCCTTGATTTCCAGAAGATATATGATAACATGCAAAAACCCGCTTTTGTTTTTGATGGCAGGAATGTTGTGAATGCTGAAAAGCTAAGAGAGATTGGGTTTATCGTCTACTCAATTGGTAAGCCTCTCGATGCCTGGCTTAAGGACATGCCTGCTGTCGCTTAAGAGCCTTACATTGCTCGAGTGACTTGTTTTGGTCTTAAAGATATTAGTTATCAGACAATCATCAGCTGGGATTCTTTACTATTTTTTTTACCACTTCAATTTCTGTTTCCATTTTATCCATTGTAGTCATAAGACCACCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTCTGTTTCTTTTGTATTGATGATACTTGTTTTTATCATTTACTTGTCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539138" ref_strand="+" ref_description="SGN-E539138 [TUS-58-L23](-)">
      <seq>attgagcatatacgatcntcaggtgcaggaggacaaatcccagagggacctctccatgaagaagtttgactgggatcatccccttcacctccaaccaatgagtcccacatccgtgaaacaacaagtcagtgttactatggatgcctacggtgcaacaaaagatgcccatgctgtctgcattctcacagagtgggatgagttcaagacccttgatttccagaagatatatgataacatgcaaaaacccgcttttgtttttgatggcaggaatgttgtgaatgctgaaaagctaagagagattgggtttatcgtctactcaattggtaagcctctcgatgcctggcttaaggacatgcctgctgtcgcttaagagccttacattgctcgagtgacttgttttggtcttaaagatattagttatcagacaatcatcagctgggattctttactattttttttaccacttcaatttctgtttccattttatccattgtagtcataagaccaccatcgtcactatcttgagtcacatgtaagatgttttctgtttcttttgtattgatgatacttgtttttatcatttacttgtcatgtcggaggatttatttgttcgattatgaagggtatttaagttttgaactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="86497" stop="87738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86797" g_stop="87438" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E539138" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86797" e_stop="87438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGCATATACGATCCTCAGGTGCAGGAGGACCAAATCCAGAGGGACCTCTCCATGAAGAAGTTTGACTGGGATCATCCCCTTCACCTCCAACCAATGAGTCCCACATCCGTGAAACAACAAGTCAGTGTTACTATGGATGCCTACGGTGCAACAAAAGATGCCCATGCTGTCTGCATTCTCACAGAGTGGGATGAGTTCAAGACCCTTGATTTCCAGAAGATATATGATAACATGCAAAAACCCGCTTTTGTTTTTGATGGCAGGAATGTTGTGAATGCTGAAAAGCTAAGAGAGATTGGGTTTATCGTCTACTCAATTGGTAAGCCTCTCGATGCCTGGCTTAAGGACATGCCTGCTGTCGCTTAAGAGCCTTACATTGCTCGAGTGACTTGTTTTGGTCTTAAAGATATTAGTTATCAGACAATCATCAGCTGGGATTCTTTACTATTTTTTTTACCACTTCAATTTCTGTTTCCATTTTATCCATTGTAGTCATAAGACCACCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTCTGTTTCTTTTGTATTGATGATACTTGTTTTTATCATTTACTTGTCATGTCGGAGGATTTATTTGTTCGATTATGAAGGGTATTTAAGTTTTGAACTA</genome_strand>
        <mrna_strand>ATTGAGCATATACGATCNTCAGGTGCAGGAGGACAAATCCCAGAGGGACCTCTCCATGAAGAAGTTTGACTGGGATCATCCCCTTCACCTCCAACCAATGAGTCCCACATCCGTGAAACAACAAGTCAGTGTTACTATGGATGCCTACGGTGCAACAAAAGATGCCCATGCTGTCTGCATTCTCACAGAGTGGGATGAGTTCAAGACCCTTGATTTCCAGAAGATATATGATAACATGCAAAAACCCGCTTTTGTTTTTGATGGCAGGAATGTTGTGAATGCTGAAAAGCTAAGAGAGATTGGGTTTATCGTCTACTCAATTGGTAAGCCTCTCGATGCCTGGCTTAAGGACATGCCTGCTGTCGCTTAAGAGCCTTACATTGCTCGAGTGACTTGTTTTGGTCTTAAAGATATTAGTTATCAGACAATCATCAGCTGGGATTCTTTACTATTTTTTTTACCACTTCAATTTCTGTTTCCATTTTATCCATTGTAGTCATAAGACCACCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTCTGTTTCTTTTGTATTGATGATACTTGTTTTTATCATTTACTTGTCATGTCGGAGGATTTATTTGTTCGATTATGAAGGGTATTTAAGTTTTGAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311378" ref_strand="+" ref_description="SGN-E311378 [cLEZ-18-F6]">
      <seq>ttgatttccagaagatatatgataacatgcaaaaacccgcttttgtttttgatggcaggaatgttgtgaatgctgaaaagctaagagagattgggtttatcgtctactcaattggtaagcctctcgatgcctggcttaaggacatgcctgctgtcgcttaagagccttacattgctcgagtgacttgttttggtcttaaagatattagttatcagacaatcatcagctgggattctttactattttttttaccacttcaatttctgtttccattttatccattgtagtcataagaccaccatcgtcactatcttgagtcacatgtaagatgttttctgtttcttttgtattgatgatacttgtttttatcatttacttgtcatgtcggaggatttatttgttcgattatgaagggtatttaagttttgaactagtttttttcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="86706" stop="87749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87006" g_stop="87449" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="445" polyA_stop="457"/>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E311378" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87006" e_stop="87449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTCCAGAAGATATATGATAACATGCAAAAACCCGCTTTTGTTTTTGATGGCAGGAATGTTGTGAATGCTGAAAAGCTAAGAGAGATTGGGTTTATCGTCTACTCAATTGGTAAGCCTCTCGATGCCTGGCTTAAGGACATGCCTGCTGTCGCTTAAGAGCCTTACATTGCTCGAGTGACTTGTTTTGGTCTTAAAGATATTAGTTATCAGACAATCATCAGCTGGGATTCTTTACTATTTTTTTTACCACTTCAATTTCTGTTTCCATTTTATCCATTGTAGTCATAAGACCACCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTCTGTTTCTTTTGTATTGATGATACTTGTTTTTATCATTTACTTGTCATGTCGGAGGATTTATTTGTTCGATTATGAAGGGTATTTAAGTTTTGAACTAGTTTTTTTCTT</genome_strand>
        <mrna_strand>TTGATTTCCAGAAGATATATGATAACATGCAAAAACCCGCTTTTGTTTTTGATGGCAGGAATGTTGTGAATGCTGAAAAGCTAAGAGAGATTGGGTTTATCGTCTACTCAATTGGTAAGCCTCTCGATGCCTGGCTTAAGGACATGCCTGCTGTCGCTTAAGAGCCTTACATTGCTCGAGTGACTTGTTTTGGTCTTAAAGATATTAGTTATCAGACAATCATCAGCTGGGATTCTTTACTATTTTTTTTACCACTTCAATTTCTGTTTCCATTTTATCCATTGTAGTCATAAGACCACCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTCTGTTTCTTTTGTATTGATGATACTTGTTTTTATCATTTACTTGTCATGTCGGAGGATTTATTTGTTCGATTATGAAGGGTATTTAAGTTTTGAACTAGTTTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228568" ref_strand="+" ref_description="SGN-E228568 [cLEL-29-F11](-)">
      <seq>gatatatgataacatgcaaaaacccgcttttgtttttgatggcaggaatgttgtgaatgctgaaaagctaagagagattgggtttatcgtctactcaattggtaagcctctcgatgcctggcttaaggacatgcctgctgtcgcttaagagccttacattgctccagtgacttgttttggtcttatagctattagttatcagacaatcatcagctgggattctttactatttttttgaccacttcaatttctgtttccattttatccattgtagtcataagaccaccatcgtcactatcttgagtcacatgtaagatgttttctgtttcttttgtattgatgatacttgttttaatcatttacttgtcatgtcggaggatttatttgttaaattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="86719" stop="105980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87019" g_stop="87430" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E228568" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87019" e_stop="87430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATATGATAACATGCAAAAACCCGCTTTTGTTTTTGATGGCAGGAATGTTGTGAATGCTGAAAAGCTAAGAGAGATTGGGTTTATCGTCTACTCAATTGGTAAGCCTCTCGATGCCTGGCTTAAGGACATGCCTGCTGTCGCTTAAGAGCCTTACATTGCTCGAGTGACTTGTTTTGGTCTTAAAGATATTAGTTATCAGACAATCATCAGCTGGGATTCTTTACTATTTTTTTTACCACTTCAATTTCTGTTTCCATTTTATCCATTGTAGTCATAAGACCACCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTCTGTTTCTTTTGTATTGATGATACTTGTTTTTATCATTTACTTGTCATGTCGGAGGATTTATTTGTTCGATTATGAAGGGTATTTAAGTT</genome_strand>
        <mrna_strand>GATATATGATAACATGCAAAAACCCGCTTTTGTTTTTGATGGCAGGAATGTTGTGAATGCTGAAAAGCTAAGAGAGATTGGGTTTATCGTCTACTCAATTGGTAAGCCTCTCGATGCCTGGCTTAAGGACATGCCTGCTGTCGCTTAAGAGCCTTACATTGCTCCAGTGACTTGTTTTGGTCTTATAGCTATTAGTTATCAGACAATCATCAGCTGGGATTCTTTACTATTTTTTTGACCACTTCAATTTCTGTTTCCATTTTATCCATTGTAGTCATAAGACCACCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTCTGTTTCTTTTGTATTGATGATACTTGTTTTAATCATTTACTTGTCATGTCGGAGGATTTATTTGTTAAATTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E229049" ref_strand="+" ref_description="SGN-E229049 [cLEL-29-F12](-)">
      <seq>gcaaaaacccgcttttgtttttgatggcaggaatgttgtgaatgctgaaaagctaaaagagattggggttatcgtctacccaattggtaaacctctccatgcctggcttaaggacatgcctgctgtcgcttaagagccttacattgctcgagtgacttgttttggtcttaaagatattagttatcagccaatcatcagctgggattctttactattttttttaccacttcaagttctgtttccattttatccattgtagtcataagacccccatcgtcactatcttgagtcacatgtaagatgttttctgtttcttttgtattgatgatacttgtttttatcatttacttgtccaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="86734" stop="105978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87034" g_stop="87386" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87387" i_stop="89035" i_length="1649">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89036" g_stop="89059" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="377" r_length="24" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E229049" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87034" e_stop="87386"/>
          <exon e_start="89036" e_stop="89059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAACCCGCTTTTGTTTTTGATGGCAGGAATGTTGTGAATGCTGAAAAGCTAAGAGAGATTGGGTTTATCGTCTACTCAATTGGTAAGCCTCTCGATGCCTGGCTTAAGGACATGCCTGCTGTCGCTTAAGAGCCTTACATTGCTCGAGTGACTTGTTTTGGTCTTAAAGATATTAGTTATCAGACAATCATCAGCTGGGATTCTTTACTATTTTTTTTACCACTTCAATTTCTGTTTCCATTTTATCCATTGTAGTCATAAGACCACCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTCTGTTTCTTTTGTATTGATGATACTTGTTTTTATCATTTACTTGTCATGTCGGAGGATTTATTTGTTCGATTATGAAGGGTATTTAAGTTTTGAACTAGTTTTTTTCTTCCTTCCGAATTTGGTATGAATTAGATGCTTTCGGAATCTTATGCAAGATTCAGTATTACAGAGTTGAAGTTGAAAGGGCATTCGTCTTGTAATCATTTATTTGCATGCGTCAGTGAGTAGTTGTTTTGATCTTGTGTCTGCTTCAAACAAAAGGTCGGTTGTTGGGCTGGTCTTTTCTTATACCTTTATGATAAAATCCAAAAAAGGTCTTTACATCACACGATTCTCAGTTGGCTAATTTTGGTGCTCTAAGCTAATATCCAATGACTCATTCGTTGTCAAATGGGCCTAAGTAATGGGTTTGATTGTTGAAGAATATGTCAAGTCATGTCATATAAACCAACTTTTTTGAGCCTGAAATTTGTTCCCCAACGTATATCAAGTTGATATTCCGGATCTTGAATATAAACTAAATGAGTTCAATCTTTTACTTCTTTAGTATAGATTGTCAAGTTACTCATTTTTGTTCAAACCACCCACCTCGAATGTACTGTGATTTCAGATGAACTAGATGCGACATGCGCCTCAGATTACAACTATGTTTCATCTGCTATCACAAACAGTAGGAGATGCACAAATACTCTGCCTTCACTACCTTAAAATCTTGGATTTGTTTCTCGTGGAAATATACAAGTACTCTTTCTTAAAAATCTTGAATACTACTATGGATATTAGTCAGAATCCTTGTTAAACTTCTTTAGGTTGTCACTTGTCAAGTTGACTTGTATAATTTCTCAATTTTCATCATCGATTATAAATTAGAGTTGACTCTACCCATGTGAGCTTTGGAAAGTTTAACCGATTTAAAAGAAATAAGTTTACGATCACATGGAATATGACATAGGGGGAGTATGATAATAAGTAAGACTAAGTTGCAATTGCAATACACAACACTATTACCATTAATTCTACTCCAAATTAATTGATAGATCGTCAATCGAACCTAACTAATAAAGGTGAAACTAGCCAACCAATTGATCTAATAATCAAAGTTACGATCTCAACCAATTCAAAGCACTCTAGACTTTGAATTTTTTTATTGTTCTATTTGCCCTTTATTTGTTTGATTTTAATAAAGGTGACAAATCTTTAATTGCATGTATGGCTTTCTCCTCAAGAATTAAAGAACTCTGTTTCTGCTCACTCTCCAATTGGTTAGTTTCTGAGTGTATATATACAACCCAAGAAACGAACTCCTAACAAACCCATCTTCTCCATTTTGTTAGAGTTCGAGTCGGAATACACAGTTCCCATTACTGATTTCTTAATTTTGCAAAACTTTTGAGCTTTCGTTTTAGTGCGCCATTATTCTTTCAGCATTTCCTACTGATTTTCCTCTTCAAGTAAGATTCTTTTTGCGAACCCCAAATGGAAGAACCACAAGGACACAAGTTTATATGCAAATTTTGTGACAAGAGTTGTGATAGTGGAAAGTCATTGGGAGGTCACATGAGGGGTCATTTAGCATTGATTTCAGCTGCAAAGAATCAGAAAGAAGAAGCTGATGGCAAAATGGGTTCTCAAGAAGAAGAAGAAGCTGCAAATACCCATGAAGATTTGAGCATTTCAGGGCAATCTGATGGAAGCATGAATCAAGAAAAGGAAAATAA</genome_strand>
        <mrna_strand>GCAAAAACCCGCTTTTGTTTTTGATGGCAGGAATGTTGTGAATGCTGAAAAGCTAAAAGAGATTGGGGTTATCGTCTACCCAATTGGTAAACCTCTCCATGCCTGGCTTAAGGACATGCCTGCTGTCGCTTAAGAGCCTTACATTGCTCGAGTGACTTGTTTTGGTCTTAAAGATATTAGTTATCAGCCAATCATCAGCTGGGATTCTTTACTATTTTTTTTACCACTTCAAGTTCTGTTTCCATTTTATCCATTGTAGTCATAAGACCCCCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTCTGTTTCTTTTGTATTGATGATACTTGTTTTTATCATTTACTTGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E229240" ref_strand="+" ref_description="SGN-E229240 [cLEL-29-F11](-)">
      <seq>aaaaacccgcttttgtttttgatggcaggaatgttgtgaatgctgaaaagctaagagagattgggtttatcgtctactcaattggtaagcctctcgatgcctggcttaaggacatgcctgctgtcgcttaagagccttacattgctcgagtgacttgttttggtcttaaagatattagttatcagacaatcatcagctgggattctttactattttttttaccacttcaatttctgtttccattttatccattgtagtcataagaccaccatcgtcactatcttgagtcacatgtaagatgttttctgtttcttttgtattgatgatacttgtttttatcatttacttgtcatgtcggaggatttatttgttcgattcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="86736" stop="87717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87036" g_stop="87412" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="395"/>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E229240" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87036" e_stop="87412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCCGCTTTTGTTTTTGATGGCAGGAATGTTGTGAATGCTGAAAAGCTAAGAGAGATTGGGTTTATCGTCTACTCAATTGGTAAGCCTCTCGATGCCTGGCTTAAGGACATGCCTGCTGTCGCTTAAGAGCCTTACATTGCTCGAGTGACTTGTTTTGGTCTTAAAGATATTAGTTATCAGACAATCATCAGCTGGGATTCTTTACTATTTTTTTTACCACTTCAATTTCTGTTTCCATTTTATCCATTGTAGTCATAAGACCACCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTCTGTTTCTTTTGTATTGATGATACTTGTTTTTATCATTTACTTGTCATGTCGGAGGATTTATTTGTTCGATT</genome_strand>
        <mrna_strand>AAAAACCCGCTTTTGTTTTTGATGGCAGGAATGTTGTGAATGCTGAAAAGCTAAGAGAGATTGGGTTTATCGTCTACTCAATTGGTAAGCCTCTCGATGCCTGGCTTAAGGACATGCCTGCTGTCGCTTAAGAGCCTTACATTGCTCGAGTGACTTGTTTTGGTCTTAAAGATATTAGTTATCAGACAATCATCAGCTGGGATTCTTTACTATTTTTTTTACCACTTCAATTTCTGTTTCCATTTTATCCATTGTAGTCATAAGACCACCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTCTGTTTCTTTTGTATTGATGATACTTGTTTTTATCATTTACTTGTCATGTCGGAGGATTTATTTGTTCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228761" ref_strand="+" ref_description="SGN-E228761 [cLEL-29-F12](-)">
      <seq>gatgcctggcttaaggacatgcctgctgtcgcttaagagccttacattgctcgagtgacttgttttggtcttaaagatattagttatcagacaatcatcagctgggattctttactattttttttaccacttcaatttctgtttccattttatccattgtagtcataagaccaccatcgtcactatcttgagtcacatgtaagatgttttctgtttcttttgtattgatgatacctgtttttatcatttacttgtcaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="86831" stop="105978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87131" g_stop="87388" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87389" i_stop="87641" i_length="253">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87642" g_stop="87655" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="272" r_length="14" r_score="0.714"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87656" i_stop="87951" i_length="296">
            <donor d_prob="0.315" d_score="0.00"/>
            <acceptor a_prob="0.881" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87952" g_stop="87959" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="280" r_length="8" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E228761" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87131" e_stop="87388"/>
          <exon e_start="87642" e_stop="87655"/>
          <exon e_start="87952" e_stop="87959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCCTGGCTTAAGGACATGCCTGCTGTCGCTTAAGAGCCTTACATTGCTCGAGTGACTTGTTTTGGTCTTAAAGATATTAGTTATCAGACAATCATCAGCTGGGATTCTTTACTATTTTTTTTACCACTTCAATTTCTGTTTCCATTTTATCCATTGTAGTCATAAGACCACCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTCTGTTTCTTTTGTATTGATGATACTTGTTTTTATCATTTACTTGTCATGTCGGAGGATTTATTTGTTCGATTATGAAGGGTATTTAAGTTTTGAACTAGTTTTTTTCTTCCTTCCGAATTTGGTATGAATTAGATGCTTTCGGAATCTTATGCAAGATTCAGTATTACAGAGTTGAAGTTGAAAGGGCATTCGTCTTGTAATCATTTATTTGCATGCGTCAGTGAGTAGTTGTTTTGATCTTGTGTCTGCTTCAAACAAAAGGTCGGTTGTTGGGCTGGTCTTTTCTTATACCTTTATGATAAAATCCAAAAAAGGTCTTTACATCACACGATTCTCAGTTGGCTAATTTTGGTGCTCTAAGCTAATATCCAATGACTCATTCGTTGTCAAATGGGCCTAAGTAATGGGTTTGATTGTTGAAGAATATGTCAAGTCATGTCATATAAACCAACTTTTTTGAGCCTGAAATTTGTTCCCCAACGTATATCAAGTTGATATTCCGGATCTTGAATATAAACTAAATGAGTTCAATCTTTTACTTCTTTAGTATAGATTGTCAAGTTACTCATTTTTGTTCAAACCACCCACCTCGAATGTACTGTGATTTCAGATGAACTA</genome_strand>
        <mrna_strand>GATGCCTGGCTTAAGGACATGCCTGCTGTCGCTTAAGAGCCTTACATTGCTCGAGTGACTTGTTTTGGTCTTAAAGATATTAGTTATCAGACAATCATCAGCTGGGATTCTTTACTATTTTTTTTACCACTTCAATTTCTGTTTCCATTTTATCCATTGTAGTCATAAGACCACCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTCTGTTTCTTTTGTATTGATGATACCTGTTTTTATCATTTACTTGTCAA.............................................................................................................................................................................................................................................................AAAAAAAAAAAAAA........................................................................................................................................................................................................................................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302743" ref_strand="+" ref_description="SGN-E302743 [cLEY-1-G5]">
      <seq>ctcgtgccgaattcggcacgagggaccaccatcgtcactatcttgagtcacatgtaagatgttttctgtttcttttgtattgatgatacttgtttttatcatttacttgtcatgtcggaggatttatttgttcgattatgaagggtatttaagttttgaactaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="86999" stop="105980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87293" g_stop="87438" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="163" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87439" i_stop="87639" i_length="201">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87640" g_stop="87655" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="179" r_length="16" r_score="0.688"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87656" i_stop="87951" i_length="296">
            <donor d_prob="0.315" d_score="0.00"/>
            <acceptor a_prob="0.881" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87952" g_stop="87960" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="188" r_length="9" r_score="0.444"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E302743" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>171</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87293" e_stop="87438"/>
          <exon e_start="87640" e_stop="87655"/>
          <exon e_start="87952" e_stop="87960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATAAGACCACCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTCTGTTTCTTTTGTATTGATGATACTTGTTTTTATCATTTACTTGTCATGTCGGAGGATTTATTTGTTCGATTATGAAGGGTATTTAAGTTTTGAACTAGTTTTTTTCTTCCTTCCGAATTTGGTATGAATTAGATGCTTTCGGAATCTTATGCAAGATTCAGTATTACAGAGTTGAAGTTGAAAGGGCATTCGTCTTGTAATCATTTATTTGCATGCGTCAGTGAGTAGTTGTTTTGATCTTGTGTCTGCTTCAAACAAAAGGTCGGTTGTTGGGCTGGTCTTTTCTTATACCTTTATGATAAAATCCAAAAAAGGTCTTTACATCACACGATTCTCAGTTGGCTAATTTTGGTGCTCTAAGCTAATATCCAATGACTCATTCGTTGTCAAATGGGCCTAAGTAATGGGTTTGATTGTTGAAGAATATGTCAAGTCATGTCATATAAACCAACTTTTTTGAGCCTGAAATTTGTTCCCCAACGTATATCAAGTTGATATTCCGGATCTTGAATATAAACTAAATGAGTTCAATCTTTTACTTCTTTAGTATAGATTGTCAAGTTACTCATTTTTGTTCAAACCACCCACCTCGAATGTACTGTGATTTCAGATGAACTAG</genome_strand>
        <mrna_strand>ACGAGGGACCACCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTCTGTTTCTTTTGTATTGATGATACTTGTTTTTATCATTTACTTGTCATGTCGGAGGATTTATTTGTTCGATTATGAAGGGTATTTAAGTTTTGAACTA.........................................................................................................................................................................................................AAAAAAAAAAAAAAAA........................................................................................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543168" ref_strand="+" ref_description="SGN-E543168 [TUS-64-N13]">
      <seq>ccaccatctgttactgctactcttgtcaccccaccccctcatcataccctccacccctaaatccacactctactcccccttatacccactacccctctccacagcctcatttctgtacttcccatctggtcccaccaccaccatcgccgccgccttctcatatccaatgccaatgtgaaaccgttcaccaaaatcatcatcattttcaagaattgaatcatcaagccaacaaagtaacagaccaacaaacccaacgaattgttacatctcttctccgtcggatcgctgccttagaatcttctctcagccggagctcctctacttcttctgtttcttctcgttctcgtcaaacgttacgcgatgctgcagcgcgtactattcagacccatttcagagccttccttgctcgtagatcgagaacacttcgacagctgaagcagttggcttccatcaaaacaactctctatgttctcaaatcgtcagtttctggtaaaatacacattgatattcgagctgttactcgcagagcgacggatttactcgttagacttgattgtattgagggcgatgatccgttaatcagagatggtagaaggtcaataagcaacgaactgactcgatttatgaaggtgattaatggggtttccatattctcaagtagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="90953" stop="92306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91253" g_stop="91815" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91816" i_stop="91906" i_length="91">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91907" g_stop="92006" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="663" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E543168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91253" e_stop="91815"/>
          <exon e_start="91907" e_stop="92006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCATCTGTTACTGCTACTCTTGTCACCCCACCCCCTCATCATACCCTCCACCCCTAAATCCACACTCTACTCCCCCTTATACCCACTACCCCTCTCCACAGCCTCATTTCTGTACTTCCCATCTGGTCCCACCACCACCATCGCCGCCGCCTTCTCATATCCAATGCCAATGTGAAACCGTTCACCAAAATCATCATCATTTTCAAGAATTGAATCATCAAGCCAACAAAGTAACAGACCAACAAACCCAACGAATTGTTACATCTCTTCTCCGTCGGATCGCTGCCTTAGAATCTTCTCTCAGCCGGAGCTCCTCTACTTCTTCTGTTTCTTCTCGTTCTCGTCAAACGTTACGCGATGCTGCAGCGCGTACTATTCAGACCCATTTCAGAGCCTTCCTTGCTCGTAGATCGAGAACACTTCGACAGCTGAAGCAGTTGGCTTCCATCAAAACAACTCTCTATGTTCTCAAATCGTCAGTTTCTGGTAAAATACACATTGATATTCGAGCTGTTACTCGCAGAGCGACGGATTTACTCGTTAGACTTGATTGTATTGAGGTAATTGAACTCTAATTGCAATTATACGCTTGTTATAATAACCCTAGCGTATTGGGGAAATGTTGAAAAAGGGGTTCTTTTTTTTTTGTAGGGCGATGATCCGTTAATCAGAGATGGTAGAAGGTCAATAAGCAACGAACTGACTCGATTTATGAAGGTGATTAATGGGGTTTCCATATTCTCAAGTAGAG</genome_strand>
        <mrna_strand>CCACCATCTGTTACTGCTACTCTTGTCACCCCACCCCCTCATCATACCCTCCACCCCTAAATCCACACTCTACTCCCCCTTATACCCACTACCCCTCTCCACAGCCTCATTTCTGTACTTCCCATCTGGTCCCACCACCACCATCGCCGCCGCCTTCTCATATCCAATGCCAATGTGAAACCGTTCACCAAAATCATCATCATTTTCAAGAATTGAATCATCAAGCCAACAAAGTAACAGACCAACAAACCCAACGAATTGTTACATCTCTTCTCCGTCGGATCGCTGCCTTAGAATCTTCTCTCAGCCGGAGCTCCTCTACTTCTTCTGTTTCTTCTCGTTCTCGTCAAACGTTACGCGATGCTGCAGCGCGTACTATTCAGACCCATTTCAGAGCCTTCCTTGCTCGTAGATCGAGAACACTTCGACAGCTGAAGCAGTTGGCTTCCATCAAAACAACTCTCTATGTTCTCAAATCGTCAGTTTCTGGTAAAATACACATTGATATTCGAGCTGTTACTCGCAGAGCGACGGATTTACTCGTTAGACTTGATTGTATTGAG...........................................................................................GGCGATGATCCGTTAATCAGAGATGGTAGAAGGTCAATAAGCAACGAACTGACTCGATTTATGAAGGTGATTAATGGGGTTTCCATATTCTCAAGTAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301983" ref_strand="+" ref_description="SGN-E301983 [cLEX-3-L22]">
      <seq>caccatctgttactgctactcttgtcaccccaccccctcatcataccctccacccctaaatccacactctactcccccttatacccactacccctctccacagcctcatttctgtacttcccatctggtcccaccaccaccatcgccgccgccttctcatatccaatgccaatgtgaaaccgttcaccaaaatcatcatcattttcaagaattgaatcatcaagccaacaaagtaacagaccaacaaacccaacgaattgttacatctcttctccgtcggatcgctgccttagaatcttctctcagccggagctcctctacttcttctgtttcttctcgttctcgtcaaacgttacgcgatgctgcagcgcgtactattcagacccatttcagagccttccttgctcgtagatcgagaacacttcgacagctgaagcagttggcttccatcaaaacaactctctatgttctcaaatcgtcagtttctggtaaaatacacattgatattcgagctgttactcgcagagcgacggatttactcgttagacttgattgtattgagggcgatgatccgttaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="90954" stop="92224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91254" g_stop="91815" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91816" i_stop="91906" i_length="91">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91907" g_stop="91924" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="580" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E301983" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91254" e_stop="91815"/>
          <exon e_start="91907" e_stop="91924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATCTGTTACTGCTACTCTTGTCACCCCACCCCCTCATCATACCCTCCACCCCTAAATCCACACTCTACTCCCCCTTATACCCACTACCCCTCTCCACAGCCTCATTTCTGTACTTCCCATCTGGTCCCACCACCACCATCGCCGCCGCCTTCTCATATCCAATGCCAATGTGAAACCGTTCACCAAAATCATCATCATTTTCAAGAATTGAATCATCAAGCCAACAAAGTAACAGACCAACAAACCCAACGAATTGTTACATCTCTTCTCCGTCGGATCGCTGCCTTAGAATCTTCTCTCAGCCGGAGCTCCTCTACTTCTTCTGTTTCTTCTCGTTCTCGTCAAACGTTACGCGATGCTGCAGCGCGTACTATTCAGACCCATTTCAGAGCCTTCCTTGCTCGTAGATCGAGAACACTTCGACAGCTGAAGCAGTTGGCTTCCATCAAAACAACTCTCTATGTTCTCAAATCGTCAGTTTCTGGTAAAATACACATTGATATTCGAGCTGTTACTCGCAGAGCGACGGATTTACTCGTTAGACTTGATTGTATTGAGGTAATTGAACTCTAATTGCAATTATACGCTTGTTATAATAACCCTAGCGTATTGGGGAAATGTTGAAAAAGGGGTTCTTTTTTTTTTGTAGGGCGATGATCCGTTAATC</genome_strand>
        <mrna_strand>CACCATCTGTTACTGCTACTCTTGTCACCCCACCCCCTCATCATACCCTCCACCCCTAAATCCACACTCTACTCCCCCTTATACCCACTACCCCTCTCCACAGCCTCATTTCTGTACTTCCCATCTGGTCCCACCACCACCATCGCCGCCGCCTTCTCATATCCAATGCCAATGTGAAACCGTTCACCAAAATCATCATCATTTTCAAGAATTGAATCATCAAGCCAACAAAGTAACAGACCAACAAACCCAACGAATTGTTACATCTCTTCTCCGTCGGATCGCTGCCTTAGAATCTTCTCTCAGCCGGAGCTCCTCTACTTCTTCTGTTTCTTCTCGTTCTCGTCAAACGTTACGCGATGCTGCAGCGCGTACTATTCAGACCCATTTCAGAGCCTTCCTTGCTCGTAGATCGAGAACACTTCGACAGCTGAAGCAGTTGGCTTCCATCAAAACAACTCTCTATGTTCTCAAATCGTCAGTTTCTGGTAAAATACACATTGATATTCGAGCTGTTACTCGCAGAGCGACGGATTTACTCGTTAGACTTGATTGTATTGAG...........................................................................................GGCGATGATCCGTTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543167" ref_strand="+" ref_description="SGN-E543167 [TUS-64-N13](-)">
      <seq>gcaagaaacttttgatactgagaaagagctgataaaaaactttagcaaaagagtgaaaaagcttggcatggcatccaaggggtgtgaaggtgatggggaagaagatggagggtatagtggaagtagtgataatgaaatggatccaaattacatttcaagaaaggatgggtattatgaaaggaatgtgagagatgagaatgataatgagcacgaaaatgagagttccgtgttctcagcaccaatgcctgtgaagatggaagctagagctgctgattatatcaacaggaaaaagggtgtcaaaatagtggacaattgaataggttcccaacaagatcaagatttgaactttgctctcctacaggtcctgttgagcattaacaattaggtggaagttaggcttctgccgttatttcgaattgtttgtaattgttagtaatgattgtctagatgagtattgttaagtttgatagggagagttcacctgttttgaagtactaaatttagatgttttcttctgtcattgtggttatggatgggagatcttttgggtgtaatggacccttattcagtggtcttaaatgaatgattgttgaagagttgaaagatgtctgtcacattttattcaacataaattaacaggtggctatttcttgagaaaaaaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="92041" stop="93297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92341" g_stop="92992" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="654" polyA_stop="666"/>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E543167" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92341" e_stop="92992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAAACTTTTGATACTGAGAAAGAGCTGATAAAAAACCTTAGCAAAAGAGTTGAAAAGCTTGGCATGGCATCCAAGGGGTGTGAAGGTGATGGGGAAGAAGATGGAGGGTATAGTGGAAGTAGTGATAATGAAATGGATCCAAATTACATTTCAAGAAAGGATGGGTATTATGAAAGGAATGTGAGAGATGAGAATGATAATGAGCACGAAAATGAGAGTTCCGTGTTCTCAGCACCAATGCCTGTGAAGATGGAAGCTAGAGCTGCTGATTATATCAACAGGAAAAAGGGTGTCAAAATAGTGGACAATTGAATAGGTTCCCAACAAGATCAAGATTTGAACTTTGCTCTCCTACAGGTCCTGTTGAGCATTAACAATTAGGTGGAAGTTAGGCTTCTGCCGTTATTTCGAATTGTTTGTAATTGTTAGTAATGATTGTCTAGATGAGTATTGTTAAGTTTGATAGGGAGAGTTCACCTGTTTTGAAGTACTAAATTTAGATGTTTTCTTCTGTCATTGTGGTTATGGATGGGAGATCTTTTGGGTGTAATGGACCCTTATTCAGTGGTCTTAAATGAATGATTGTTGAAGAGTTGAAAGATGTCTGTCACATTTTATTCAACATAAATTAACAGGTGGCTATTTCTT</genome_strand>
        <mrna_strand>GCAAGAAACTTTTGATACTGAGAAAGAGCTGATAAAAAACTTTAGCAAAAGAGTGAAAAAGCTTGGCATGGCATCCAAGGGGTGTGAAGGTGATGGGGAAGAAGATGGAGGGTATAGTGGAAGTAGTGATAATGAAATGGATCCAAATTACATTTCAAGAAAGGATGGGTATTATGAAAGGAATGTGAGAGATGAGAATGATAATGAGCACGAAAATGAGAGTTCCGTGTTCTCAGCACCAATGCCTGTGAAGATGGAAGCTAGAGCTGCTGATTATATCAACAGGAAAAAGGGTGTCAAAATAGTGGACAATTGAATAGGTTCCCAACAAGATCAAGATTTGAACTTTGCTCTCCTACAGGTCCTGTTGAGCATTAACAATTAGGTGGAAGTTAGGCTTCTGCCGTTATTTCGAATTGTTTGTAATTGTTAGTAATGATTGTCTAGATGAGTATTGTTAAGTTTGATAGGGAGAGTTCACCTGTTTTGAAGTACTAAATTTAGATGTTTTCTTCTGTCATTGTGGTTATGGATGGGAGATCTTTTGGGTGTAATGGACCCTTATTCAGTGGTCTTAAATGAATGATTGTTGAAGAGTTGAAAGATGTCTGTCACATTTTATTCAACATAAATTAACAGGTGGCTATTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705750" ref_strand="+" ref_description="SGN-E705750 [FA28AB07]">
      <seq>gaggccttgaaggtgtcaacaagtgctcttccattgattgtttaggtagacgattaggaccatcacttttaggacgaactgatgatacagggaagctggtcaaggattttgttaagatcctcaatcaagtgaacactgaagaagtgcctgatggcctgaagctcccagagtcctttagtcaacttgttgctgaaatgaaaaacaacaagtacagtgcaaaagaatttgctttggttttaaagggaatgatggagaaatctgaaagagagattagggaatcaaagtttgcagagctgacaaataaacactttgctgcaagtgcaattcccaaaggcattcattgtctttcgctgcggttgactgatgagtactccacaaatgctcatgcacgcagacagttgccttcaccagagctactccctctgctatctgacaattcattgcaacactttgtagtggccactgacaacatcctggctgcctcagttgtggtcaattctgctgtgcagtcaactctgaagcctgaaaagattgttttccatgtcatcaccgacaagaaaacgtatgcaggcatgcactcatggtttgctctgaatcctgtcactccagctcttgtggaggttaaaggtgttcctcagtttgactggttgactagagaaaatgttcccgtgcttgaaccagtcgagagccataatgttattcgtaaatactaccatggaaatcatgttacaggtgccaatctcagtgaatacactccgcgatcttttgcatcaaagttgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="105972" stop="108660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106268" g_stop="106303" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106304" i_stop="107289" i_length="986">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107290" g_stop="107345" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="92" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107346" i_stop="107468" i_length="123">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107469" g_stop="107624" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="248" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107625" i_stop="107826" i_length="202">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107827" g_stop="108360" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="782" r_length="534" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E705750" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106268" e_stop="106303"/>
          <exon e_start="107290" e_stop="107345"/>
          <exon e_start="107469" e_stop="107624"/>
          <exon e_start="107827" e_stop="108360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCCTTGAAGGTGTCAACAAGTGCTCTTCCATTGGTAAGTTTTCTTCTATCGGATTTTTCATTTGATTAATCTTCCTAGATCCTGATGTGAATCTATGCATATTTGATGTGGCAATGTTGCTAGTTTGTTTTCAGAATTTCTAAAATGTTGTTTGAGTTGAATTGGAAATTATTGTTTTCCACTGTAGCTAGAAATGCCATTGGAGGCGTTTTTGTATCTTAGGATTGTGTGGAATTACGGGAAAGTTAAGGCTTAAACTTATTTGTCTTTCAATAACTTGTCCCAAGGATTTGAATTTGATGACAAACACAAAAAAGGAAACAAGCAATAGAGTGGTAAATGGTTTATGATTTGTTTTTTTTGGGTATACTTTACTTTTTAAAATTTTTTTACTCTATGCTGCTCCACCATTCAAATTAAGAAATTGTTAATGCGTTTGTCTTCCACTTTAGGAATCAAATGTGATTAAATTCAAAATATAGATGTCTGAGTGCATTGCTTTTGTGGAGGTGGGGGGTTGCATAGTGTTGTTTCTGGAGATGTGCATGAATGGTATTTAGTAACTGCTTCTCATGTTTGCTGCTTACTCTACCACTTATCTTAAGTATGCAACAAACTCCCAATTGACATACTTGAGTCCAGTTGATGTTGTTCATTTCTTATGGGTGTTGCATTAAGCTATCTTTAGTTCTTTGGGAATCACGTGCACCGATCACATCTCTTAGTTGTTTTTGGATGCCTTCAAATGCTTTTTTTTAAAATTCCGTGGGATGAAAAGGAAGCTTCCTTGGTGGGACCCTTTTTTGCTTTATGGATGGAAATTCTTTTGAAGTATCAATATGCCAAGAAGCTTGTTTGGTCCGGTGGTGTTGGTCCTGGTTGTGATGCTTCTAGTTGGCATTACCTTTTGTCACCCATTTTACTTTAGAATGTTGTTGGATATGAGGGATACCTTTCATCATTATTATCCTTTTTTTTTTTGCTTAACTTTAATTTCATTTTCTTCTCCTCGGTTTCAGATTGTTTAGGTAGACGATTAGGACCATCACTTTTAGGACGAACTGATGATACAGGGGTAAGTAAGCTTCATTCTACATTCTCTTATTGTCATTTCTCTCCAATCTTGTGTAAACTTTTACATGGAATTCCTTTTCTAACCCAAGTCTATGCCGTTGTTTGTCTATTGCTGTTTTGGCAGAAGCTGGTCAAGGATTTTGTTAAGATCCTCAATCAAGTGAACACTGAAGAAGTGCCTGATGGCCTGAAGCTCCCAGAGTCCTTTAGTCAACTTGTTGCTGAAATGAAAAACAACAAGTACAGTGCAAAAGAATTTGCTTTGGTTTTAAAGGGAATGGTATGTGCATGTCATTCTTTTCTAGCCTTTTTATTATTGCATGTCTATTAGCCTTATTTGTTCTTGCCTTTCCCTTGGACTTTCTACCATTTGCCCAGGGTTTTTGAGTTACTTACTGACCCCCACATTGGTTTTATTTGCACACAGACACAGAAAGATATTGTCCTCAGCTGAACTTCATGTTGAATTTGCTATTTTGCAGATGGAGAAATCTGAAAGAGAGATTAGGGAATCAAAGTTTGCAGAGCTGACAAATAAACACTTTGCTGCAAGTGCAATTCCCAAAGGCATTCATTGTCTTTCGCTGCGGTTGACTGATGAGTACTCCACAAATGCTCATGCACGCAGACAGTTGCCTTCACCAGAGCTACTCCCTCTGCTATCTGACAATTCATTGCAACACTTTGTAGTGGCCACTGACAACATCCTGGCTGCCTCAGTTGTGGTCAATTCTGCTGTGCAGTCAACTCTGAAGCCTGAAAAGATTGTTTTCCATGTCATCACCGACAAGAAAACGTATGCAGGCATGCACTCATGGTTTGCTCTGAATCCTGTCACTCCAGCTCTTGTGGAGGTTAAAGGTGTTCATCAGTTTGACTGGTTGACTAGAGAAAATGTTCCCGTGCTTGAAGCAGTCGAGAGCCATAATGTTATTCGTAAATACTACCATGGAAATCATGTTACAGGTGCCAATCTCAGTGATACAACTCCGCGATCTTTTGCATCAAAGTTGCAG</genome_strand>
        <mrna_strand>GAGGCCTTGAAGGTGTCAACAAGTGCTCTTCCATTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTTAGGTAGACGATTAGGACCATCACTTTTAGGACGAACTGATGATACAGGG...........................................................................................................................AAGCTGGTCAAGGATTTTGTTAAGATCCTCAATCAAGTGAACACTGAAGAAGTGCCTGATGGCCTGAAGCTCCCAGAGTCCTTTAGTCAACTTGTTGCTGAAATGAAAAACAACAAGTACAGTGCAAAAGAATTTGCTTTGGTTTTAAAGGGAATG..........................................................................................................................................................................................................ATGGAGAAATCTGAAAGAGAGATTAGGGAATCAAAGTTTGCAGAGCTGACAAATAAACACTTTGCTGCAAGTGCAATTCCCAAAGGCATTCATTGTCTTTCGCTGCGGTTGACTGATGAGTACTCCACAAATGCTCATGCACGCAGACAGTTGCCTTCACCAGAGCTACTCCCTCTGCTATCTGACAATTCATTGCAACACTTTGTAGTGGCCACTGACAACATCCTGGCTGCCTCAGTTGTGGTCAATTCTGCTGTGCAGTCAACTCTGAAGCCTGAAAAGATTGTTTTCCATGTCATCACCGACAAGAAAACGTATGCAGGCATGCACTCATGGTTTGCTCTGAATCCTGTCACTCCAGCTCTTGTGGAGGTTAAAGGTGTTCCTCAGTTTGACTGGTTGACTAGAGAAAATGTTCCCGTGCTTGAACCAGTCGAGAGCCATAATGTTATTCGTAAATACTACCATGGAAATCATGTTACAGGTGCCAATCTCAGTGAATACACTCCGCGATCTTTTGCATCAAAGTTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550445" ref_strand="+" ref_description="SGN-E550445 [TUS-5-B10]">
      <seq>tgagcttctccgtcctttttggaccaagttcgttaacagctccaatgattttatcagtaattgccacatactggagtagtctacagattttccatcaaggaaaaaacacaggagaattttggaagcccacaggctttgcaaactttttattggttctagggaagttcaacaactcccattgatgagaaggagattctgacaattgcccggatatgttcaggtttccacatttgatactttaaaagagaagcatgggcataagattcattctttcaatatgtaaaatagaagttggtcacataattctattgattggacaaaggacaatatttttggcctcttatactctctattatactatagcttaagaggcaatgatagtgcatcccaggaaatgctcatcattgccatcatcagtcatacaaattggtgaatttgcgagaagaaaagctaggcgctgcgccctgttagctgcagagatcatttttccttgttaattttgttgtcattacttcattcaatcatattagactgttgtaggctatgaaacttgcatcacatagttggataaacccgtagattattacatttgctacttgttttgtatgattcaatgatatgtgcagattcatttttaccaaaaatttctccagtttttgctttttattaacgtgatttttgttgtcttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="109931" stop="111220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110231" g_stop="110922" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E550445" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110231" e_stop="110922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCCAGTTTTTGCTTTTTATTAACGTGATTTTTGTTGTCTTGATG</genome_strand>
        <mrna_strand>TGAGCTTCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCCAGTTTTTGCTTTTTATTAACGTGATTTTTGTTGTCTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E389721" ref_strand="+" ref_description="SGN-E389721 [TUS-4-B10]">
      <seq>tgagcatctccgtcctttttggaccaagttcgttaacagctccaatgattttatcagtaattgccacatactggagtagtctacagattttccatcaaggaaaaaacacaggagaattttggaagcccacaggctttgcaaactttttattggttctagggaagttcaacaactcccattgatgagaaggagattctgacaattgcccggatatgttcaggtttccacatttgatactttaaaagagaagcatgggcataagattcattctttcaatatgtaaaatagaagttggtcacataattctattgattggacaaaggacaatatttttggcctcttatactctctattatactatagcttaagaggcaatgatagtgcatcccaggaaatgctcatcattgccatcatcagtcatacaaattggtgaatttgcgagaagaaaagctaggcgctgcgccctgttagctgcagagatcatttttccttgttaattttgttgtcattacttcattcaatcatattagactgttgtaggctatgaaacttgcatcacatagttggataaacccgtagattattacatttgctacttgttttgtatgattcaatgatatgtgcagattcatttttaccaaaaatttctccagtttttgctttttattaacgtgatttttgttgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="109931" stop="111218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110231" g_stop="110918" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E389721" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110231" e_stop="110918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCCAGTTTTTGCTTTTTATTAACGTGATTTTTGTTGTCTT</genome_strand>
        <mrna_strand>TGAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCCAGTTTTTGCTTTTTATTAACGTGATTTTTGTTGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550404" ref_strand="+" ref_description="SGN-E550404 [TUS-5-B10](-)">
      <seq>tgagcatctccgtcctttttggaccaagttcgttaacagctccaatgattttatcagtaattgccacatactggagtagtctacagattttccatcaaggaaaaaacacaggagaattttggaagcccacaggctttgcaaactttttattggttctagggaagttcaacaactcccattgatgagaaggagattctgacaattgcccggatatgttcaggtttccacatttgatactttaaaagagaagcatgggcataagattcattctttcaatatgtaaaatagaagttggtcacataattctattgattggacaaaggacaatatttttggcctcttatactctctattatactatagcttaagaggcaatgatagtgcatcccaggaaatgctcatcattgccatcatcagtcatacaaattggtgaatttgcgagaagaaaagctaggcgctgcgccctgttagctgcagagatcatttttccttgttaattttgttgtcattacttcattcaatcatattagactgttgtaggctatgaaacttgcatcacatagttggataaacccgtagattattacatttgctacttgttttgtatgattcaatgatatgtgcagatttcttttaccaaggaatatctccagttttgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="109931" stop="111194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110231" g_stop="110894" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E550404" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110231" e_stop="110894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCCAGTTTTTGCTTTT</genome_strand>
        <mrna_strand>TGAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTTCTTTTACCAAGGAATATCTCCAG-TTTTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550216" ref_strand="+" ref_description="SGN-E550216 [TUS-5-A10]">
      <seq>tgcgcatctccgtcctttttggaccaagttcgttaacagctccaatgattttatcagtaattgccacatactggagtagtctacagattttccatcaaggaaaaaacacaggagaattttggaagcccacaggctttgcaaactttttattggttctagggaagttcaacaactcccattgatgagaaggagattctgacaattgcccggatatgttcaggtttccacatttgatactttaaaagagaagcatgggcataagattcattctttcaatatgtaaaatagaagttggtcacataattctattgattggacaaaggacaatatttttggcctcttatactctctattatactatagcttaagaggcaatgatagtgcatcccaggaaatgctcatcattgccatcatcagtcatacaaattggtgaatttgcgagaagaaaagctaggcgctgcgccctgttagctgcagagatcatttttccttgttaattttgttgtcattacttcattcaatcatattagactgttgtaggctatgaaacttgcatcacatagttggataaacccgtacattattacatttgctacttgctttgtatgattcaatgatatgtgcagattcatttttaccaaaaatttctcaagtttgtgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="109931" stop="111193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110231" g_stop="110893" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E550216" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110231" e_stop="110893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCCAGTTTTTGCTTT</genome_strand>
        <mrna_strand>TGCGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTACATTATTACATTTGCTACTTGCTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCAAGTTTGTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E389457" ref_strand="+" ref_description="SGN-E389457 [TUS-4-B10](-)">
      <seq>tgagcatctccgtcttttttggaccaagttcgttaacagctccaatgattttatcagtaattgccacatactggagtagtctacagattttccatcaaggaaaaaacacaggagaattttggaagcccacaggctttgcaaactttttattggttctagggaagttcaacaactcccattgatgagaaggagattctgacaattgcccggatatgttcaggtttccacatttgatactttaaaagagaagcatgggcataagattcattctttcaatatgtaaaatagaagttggtcacataattctattgattggacaaaggacaatatttttggcctcttatactctctattatactatagcttaagaggcaatgatagtgcatcccaggaaatgctcatcattgccatcatcagtcatacaaattggtgaatttgcgagaagaaaagctaggcgctgcgccctgttagctgcagagatcatttttccttgttaattttgttgtcattacttcattcaatcatattagactgttgtaggctatgaaacttgcatcacatagttggataaacccgtagattattacatttgctacttgttttgtatgattcaatgatatgtgcagattcattttaccaaagatttctccagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="109931" stop="111187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110231" g_stop="110887" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E389457" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110231" e_stop="110887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCCAGTTTT</genome_strand>
        <mrna_strand>TGAGCATCTCCGTCTTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCA-TTTTACCAAAGATTTCTCCAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550396" ref_strand="+" ref_description="SGN-E550396 [TUS-5-A9](-)">
      <seq>tgagcatctccgtcctttttggaccaagttcgttaacagctccaatgattttatcagtaattgccacatactggagtagtctacagattttccatcaaggaaaaaacacaggagaattttggaagcccacaggctttgcaaactttttattggttctagggaagttcaacaactcccattgatgagaaggagattctgacaattgcccggatatgttcaggtttccacatttgatactttaaaagagaagcatgggcataagattcattctttcaatatgtaaaatagaagttggtcacataattctattgattggacaaaggacaatatttttggcctcttatactctctattatactatagcttaagaggcaatgatagtgcatcccaggaaatgctcatcattgccatcatcagtcatacaaattggtgaatttgcgagaagaaaagctaggcgctgcgccctgttagctgcagagatcatttttccttgttaattttgttgtcattacttcattcaatcatattagactgttgtaggctatgaaacttgcgtcacatagttggataaacccgtagattattacatttgctacttgttctgtatgattcgaagntatgtgcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="109931" stop="111157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110231" g_stop="110857" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E550396" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110231" e_stop="110857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGA</genome_strand>
        <mrna_strand>TGAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCGTCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTCTGTATGATTCGAAGNTATGTGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377845" ref_strand="+" ref_description="SGN-E377845 [TUS-21-L3]">
      <seq>gagcatctccgtcctttttggaccaagttcgttaacagctccaatgattttatcagtaattgccacatactggagtagtctacagattttccatcaaggaaaaaacacaggagaattttggaagcccacaggctttgcaaactttttattggttctagggaagttcaacaactcccattgatgagaaggagattctgacaattgcccggatatgttcaggtttccacatttgatactttaaaagagaagcatgggcataagattcattctttcaatatgtaaaatagaagttggtcacataattctattgattggacaaaggacaatatttttggcctcttatactctctattatactatagcttaagaggcaatgatagtgcatcccaggaaatgctcatcattgccatcatcagtcatacaaattggtgaatttgcgagaagaaaagctaggcgctgcgccctgttagctgcagagatcatttttccttgttaattttgttgtcattacttcattcaatcatattagactgttgtaggctatgaaacttgcatcacatagttggataaacccgtagattattacatttgctacttgttttgtatgattcaatgatatgtgcagattcatttttaccaaaaatttctccagtttttgctttttattaacgtgatttttgttgtcttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="109932" stop="111220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110232" g_stop="110919" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="689" polyA_stop="726"/>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E377845" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110232" e_stop="110919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCCAGTTTTTGCTTTTTATTAACGTGATTTTTGTTGTCTTG</genome_strand>
        <mrna_strand>GAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCCAGTTTTTGCTTTTTATTAACGTGATTTTTGTTGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235264" ref_strand="+" ref_description="SGN-E235264 [cLED-11-C17]">
      <seq>gagcatctccgtcctttttggaccaagttcgttaacagctccaatgattttatcagtaattgccacatactggagtagtctacagattttccatcaaggaaaaaacacaggagaattttggaagcccacaggctttgcaaactttttattggttctagggaagttcaacaactcccattgatgagaaggagattctgacaattgcccggatatgttcaggtttccacatttgatactttaaaagagaagcatgggcataagattcattctttcaatatgtaaaatagaagttggtcacataattctattgattggacaaaggacaatatttttggcctcttatactctctattatactatagcttaagaggcaatgatagtgcatcccaggaaatgctcatcattgccatcatcagtcatacaaattggtgaatttgcgagaagaaaagctaggcgctgcgccctgttagctgcagagatcatttttccttgctaattttgttgtcattacttcattcaatcatattagactgttgtaggctatgaaacttgcatcacatagttggataaacccgtagattattacatttgctacttgttttgtatgattcaatgatatgtgcagattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="109932" stop="111161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110232" g_stop="110861" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E235264" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110232" e_stop="110861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCA</genome_strand>
        <mrna_strand>GAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGCTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550145" ref_strand="+" ref_description="SGN-E550145 [TUS-5-A9]">
      <seq>accaagttcgttaacagctccaatgattttatcagtaattgccacatactggagtagtctacagattttccatcaaggaaaaaacacaggagaattttggaagcccacaggctttgcaaactttttattggttctagggaagttcaacaactcccattgatgagaaggagattctgacaattgcccggatatgttcaggtttccacatttgatactttaaaagagaagcatgggcataagattcattctttcaatatgtaaaatagaagttggtcacataattctattgattggacaaaggacaatatttttggcctcttatactctctattatactatagcttaagaggcaatgatagtgcatcccaggaaatgctcatcattgccatcatcagtcatacaaattggtgaatttgcgagaagaaaagctaggcgctgcgccctgttagctgcagagatcatttttccttgttaattttgttgtcattacttcattcaatcatattagactgttgtaggctatgaaacttgcatcacatagttggataaacccgtagattattacatttgctacttgttttgtatgattcaatgatatgtgcagattcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="109953" stop="111164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110253" g_stop="110864" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E550145" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110253" e_stop="110864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTT</genome_strand>
        <mrna_strand>ACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394757" ref_strand="+" ref_description="SGN-E394757 [TUS-42-H5]">
      <seq>ttttattgttaatgccttacacgtattacctaccctttccttttcttcttccctatactagttttgtagctctatctgtcttgaggaatatcatatgtaattactttgttcggtaaacagtggacagtttccagatcagtttctcttaacaatttaaggctgggatttgggaatttgatgagatccataaagtgtcaagaaccaaagactaaattctttggtcttgggagcttcagtgattgtgttaattaaggctgaacaggttacaggaagatcctagtaaaagatccttgtgttgggtttgttttgtaatttagaacaaggatgtctgcagctcaagatcaactggagattaagtttagattgattgatggaacagatattgggcccaagagtttttctgcggctacaagcgtagcaaccttaaaggagaacatccttgctcagtggcccagagagaaggataatggtccgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="111831" stop="114589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112131" g_stop="112281" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112282" i_stop="112607" i_length="326">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112608" g_stop="112913" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="457" r_length="306" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112914" i_stop="114269" i_length="1356">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114270" g_stop="114289" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="477" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E394757" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112131" e_stop="112281"/>
          <exon e_start="112608" e_stop="112913"/>
          <exon e_start="114270" e_stop="114289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTGTTAATGCATTACACGTATTACCTACCCTTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACAGTAAGCATTTGATGATAATTTTTTTGTTTTGTTTTAAAGATCCATTCTTTTGTAGAATTGTAACTTGATGATTCTTGTCTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAGGTTAGTTTAGTTCTTGAATAGCTGATAAATTGTGTGTGAGATTTTCAATTACCCTAGATTTCTGTTGGTGGCTTGATTGCTTTAAGAACCGTAATCATGGTTGTTAAGGCTCTAATATTTTGGAGCTTATCATAGTCTATGATCTGTAGTTGTTACTTTTGTTAGATAATATAGCTCTGTGGATAGTTCCTTCACTTAAGTTCTCTACCGAAAAGTAATATGTATACAATTTGTAGGGATTCTGAATGATAAAAAAAATTGGCACATTGTTATTCAGATAGTTGAGGCGCTTTGCTGCTTCAATCAAATAGTGGTGGACTTTCGCTTGAGATTGTTTTAGGCGTCTTCCTCTAAAGGGATATTGGTTAAGAAAGTCGACAAAGTAGACTCTGATAGTGTTTAGATGACATGAAGCTCTGGCTAATCAAACCTTTCAACTTTTAGATGTGCTGATGCATTGTTTGTTATGCAAATATTGGATATTCACTTTTTTCTGATAGGACTTCTAATTTTAAGCATGTATTTTAGAAAGGAAAATTGAGAAGCCTAAAAGAATGATGTGTTAGTCCATATAATAAAACCAACATCTAATGAAAAGTCGTTTGATTAGGTCCCTGTAATAAAAACCGATATTTTCAATGCACCTAGTTCAATGGCAGTAAGTTCGTGCATGTCTTTCAGAATGTCCTATTTCATTCACGTGTTGCTAAGTATGTCAAATTCCTTGACTGAACTTTAAGGTTTGCACAGTTCACCGGAGCAGGTATCGAGTAAATCATGTTTTCTCAGCATTCGAGATGACTCTGAAAGAATTAGCTGCGATGCAAACAAAAATATATTGAATTAGAAAGGCATTATACATAAATCTGCTCTTTAACTTGGCTTCAAATATCATTTACGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAATAAATAGACACATATGTCCTACATGTCATCTTACATGTCATTTTTTGTCCTACGTGGTGTCTTACGTGTATTGTGTTATGTACGACTCATGTGTTTATTTATTTAAAAGTTGAATAGTTAAAGTGCTTGTTTGTGCATTATGAAAGTTGGAAGTCAAAATTAAAATTTAAAGCCAAGTTTAGGGTCCAATATATGTATTATGTCAATTAGAAACATGAGCTCTTTTCTTGAAATTCTTTTTTCATATTTTCAGATAATTTACCTGAATGTTGTGCACTTTCTCTCTGTTATCAAATATTTTCTGCTATTAATTTTCTTTCTATAGTCTTTTGTTAAGTATTGGGTTCAATCTTGTTACAAGTTTTCAAGTCATGTTTTCTGAGACATATATCTTATGTAATAGAGAAGGATAATGGTCCGCGG</genome_strand>
        <mrna_strand>TTTTATTGTTAATGCCTTACACGTATTACCTACCCTTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACA......................................................................................................................................................................................................................................................................................................................................ATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAATTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGATAATGGTCCGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255447" ref_strand="+" ref_description="SGN-E255447 [cLEG-30-G13]">
      <seq>tttattgttaatgcattacacgtattacctaccctttccttttcttcttccctatactagttttgtagctctatctgtcttgaggaatatcatatgtaattactttgttcggtaaacagtggacagtttccagatcagtttctcttaacaatttaaggctgggatttgggaatttgatgagatccataaagtgtcaagaaccaaagactaaattctttggtcttgggagcttcagtgattgtgttaattaaggctgaacaggttacaggaagatcctagtaaaagatccttgtgttgggtttgttttgtaagttagaacaaggatgtctgcagctcaagatcaactggagattaagtttagattgattgatggaacagatattgggcccaagagtttttctgcggctacaagcgtagcaaccttaaaggagaacatccttgctcagtggcccagagagaaggataatggtccgcggacagtaaaagatgttaagttaatcagcgctggaagaatattggaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="111832" stop="114637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112132" g_stop="112281" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112282" i_stop="112607" i_length="326">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112608" g_stop="112913" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="456" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112914" i_stop="114269" i_length="1356">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114270" g_stop="114337" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="524" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E255447" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112132" e_stop="112281"/>
          <exon e_start="112608" e_stop="112913"/>
          <exon e_start="114270" e_stop="114337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGTTAATGCATTACACGTATTACCTACCCTTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACAGTAAGCATTTGATGATAATTTTTTTGTTTTGTTTTAAAGATCCATTCTTTTGTAGAATTGTAACTTGATGATTCTTGTCTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAGGTTAGTTTAGTTCTTGAATAGCTGATAAATTGTGTGTGAGATTTTCAATTACCCTAGATTTCTGTTGGTGGCTTGATTGCTTTAAGAACCGTAATCATGGTTGTTAAGGCTCTAATATTTTGGAGCTTATCATAGTCTATGATCTGTAGTTGTTACTTTTGTTAGATAATATAGCTCTGTGGATAGTTCCTTCACTTAAGTTCTCTACCGAAAAGTAATATGTATACAATTTGTAGGGATTCTGAATGATAAAAAAAATTGGCACATTGTTATTCAGATAGTTGAGGCGCTTTGCTGCTTCAATCAAATAGTGGTGGACTTTCGCTTGAGATTGTTTTAGGCGTCTTCCTCTAAAGGGATATTGGTTAAGAAAGTCGACAAAGTAGACTCTGATAGTGTTTAGATGACATGAAGCTCTGGCTAATCAAACCTTTCAACTTTTAGATGTGCTGATGCATTGTTTGTTATGCAAATATTGGATATTCACTTTTTTCTGATAGGACTTCTAATTTTAAGCATGTATTTTAGAAAGGAAAATTGAGAAGCCTAAAAGAATGATGTGTTAGTCCATATAATAAAACCAACATCTAATGAAAAGTCGTTTGATTAGGTCCCTGTAATAAAAACCGATATTTTCAATGCACCTAGTTCAATGGCAGTAAGTTCGTGCATGTCTTTCAGAATGTCCTATTTCATTCACGTGTTGCTAAGTATGTCAAATTCCTTGACTGAACTTTAAGGTTTGCACAGTTCACCGGAGCAGGTATCGAGTAAATCATGTTTTCTCAGCATTCGAGATGACTCTGAAAGAATTAGCTGCGATGCAAACAAAAATATATTGAATTAGAAAGGCATTATACATAAATCTGCTCTTTAACTTGGCTTCAAATATCATTTACGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAATAAATAGACACATATGTCCTACATGTCATCTTACATGTCATTTTTTGTCCTACGTGGTGTCTTACGTGTATTGTGTTATGTACGACTCATGTGTTTATTTATTTAAAAGTTGAATAGTTAAAGTGCTTGTTTGTGCATTATGAAAGTTGGAAGTCAAAATTAAAATTTAAAGCCAAGTTTAGGGTCCAATATATGTATTATGTCAATTAGAAACATGAGCTCTTTTCTTGAAATTCTTTTTTCATATTTTCAGATAATTTACCTGAATGTTGTGCACTTTCTCTCTGTTATCAAATATTTTCTGCTATTAATTTTCTTTCTATAGTCTTTTGTTAAGTATTGGGTTCAATCTTGTTACAAGTTTTCAAGTCATGTTTTCTGAGACATATATCTTATGTAATAGAGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAAC</genome_strand>
        <mrna_strand>TTTATTGTTAATGCATTACACGTATTACCTACCCTTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACA......................................................................................................................................................................................................................................................................................................................................ATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369295" ref_strand="+" ref_description="SGN-E369295 [TUS-25-O18]">
      <seq>tttattgttaatgcattacacgtattacctaccctttccttttcttcttccctatactagttttgtagctctatctgtcttgaggaatatcatatgtaattactttgttcggtaaacagtggacagtttccagatcagtttctcttaacaatttaaggctgggatttgggaatttgatgagatccataaagtgtcaagaaccaaagactaaattctttggtcttgggagcttcagtgattgtgttaattaaggctgaacaggttacaggaagatcctagtaaaagatccttgtgttgggtttgttttgtaagttagaacaaggatgtctgcagctcaagatcaactggagattaagtttagattgattgatggaacagatattgggcccaagagtttttctgcggctacaagcgtagcaaccttaaaggagaacatccttgctcagtggcccagagagacggataatggtccgcggacagtaaaagatgttaagttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="111832" stop="114611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112132" g_stop="112281" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112282" i_stop="112607" i_length="326">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112608" g_stop="112913" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="456" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112914" i_stop="114269" i_length="1356">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114270" g_stop="114311" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="498" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E369295" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112132" e_stop="112281"/>
          <exon e_start="112608" e_stop="112913"/>
          <exon e_start="114270" e_stop="114311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGTTAATGCATTACACGTATTACCTACCCTTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACAGTAAGCATTTGATGATAATTTTTTTGTTTTGTTTTAAAGATCCATTCTTTTGTAGAATTGTAACTTGATGATTCTTGTCTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAGGTTAGTTTAGTTCTTGAATAGCTGATAAATTGTGTGTGAGATTTTCAATTACCCTAGATTTCTGTTGGTGGCTTGATTGCTTTAAGAACCGTAATCATGGTTGTTAAGGCTCTAATATTTTGGAGCTTATCATAGTCTATGATCTGTAGTTGTTACTTTTGTTAGATAATATAGCTCTGTGGATAGTTCCTTCACTTAAGTTCTCTACCGAAAAGTAATATGTATACAATTTGTAGGGATTCTGAATGATAAAAAAAATTGGCACATTGTTATTCAGATAGTTGAGGCGCTTTGCTGCTTCAATCAAATAGTGGTGGACTTTCGCTTGAGATTGTTTTAGGCGTCTTCCTCTAAAGGGATATTGGTTAAGAAAGTCGACAAAGTAGACTCTGATAGTGTTTAGATGACATGAAGCTCTGGCTAATCAAACCTTTCAACTTTTAGATGTGCTGATGCATTGTTTGTTATGCAAATATTGGATATTCACTTTTTTCTGATAGGACTTCTAATTTTAAGCATGTATTTTAGAAAGGAAAATTGAGAAGCCTAAAAGAATGATGTGTTAGTCCATATAATAAAACCAACATCTAATGAAAAGTCGTTTGATTAGGTCCCTGTAATAAAAACCGATATTTTCAATGCACCTAGTTCAATGGCAGTAAGTTCGTGCATGTCTTTCAGAATGTCCTATTTCATTCACGTGTTGCTAAGTATGTCAAATTCCTTGACTGAACTTTAAGGTTTGCACAGTTCACCGGAGCAGGTATCGAGTAAATCATGTTTTCTCAGCATTCGAGATGACTCTGAAAGAATTAGCTGCGATGCAAACAAAAATATATTGAATTAGAAAGGCATTATACATAAATCTGCTCTTTAACTTGGCTTCAAATATCATTTACGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAATAAATAGACACATATGTCCTACATGTCATCTTACATGTCATTTTTTGTCCTACGTGGTGTCTTACGTGTATTGTGTTATGTACGACTCATGTGTTTATTTATTTAAAAGTTGAATAGTTAAAGTGCTTGTTTGTGCATTATGAAAGTTGGAAGTCAAAATTAAAATTTAAAGCCAAGTTTAGGGTCCAATATATGTATTATGTCAATTAGAAACATGAGCTCTTTTCTTGAAATTCTTTTTTCATATTTTCAGATAATTTACCTGAATGTTGTGCACTTTCTCTCTGTTATCAAATATTTTCTGCTATTAATTTTCTTTCTATAGTCTTTTGTTAAGTATTGGGTTCAATCTTGTTACAAGTTTTCAAGTCATGTTTTCTGAGACATATATCTTATGTAATAGAGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAA</genome_strand>
        <mrna_strand>TTTATTGTTAATGCATTACACGTATTACCTACCCTTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACA......................................................................................................................................................................................................................................................................................................................................ATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369849" ref_strand="+" ref_description="SGN-E369849 [TUS-25-O19]">
      <seq>tttattgttaatgcattacacgtattacctaccctttccttttcttcttccctatactagttttgtagctctatctgtcttgaggaatatcatatgtaattactttgttcggtaaacagtggacagtttccagatcagtttctcttaacaatttaaggctgggatttgggaatttgatgagatccataaagtgtcaagaaccaaagactaaattctttggtcttgggagctttattttttgtgttaattaaggctgaacaggttacaggaagatcctagtaaaagatccttgtgttgggtttgttttgtaagtcagaacaaggatgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="111832" stop="113087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112132" g_stop="112281" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112282" i_stop="112607" i_length="326">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112608" g_stop="112787" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="330" r_length="180" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E369849" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112132" e_stop="112281"/>
          <exon e_start="112608" e_stop="112787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGTTAATGCATTACACGTATTACCTACCCTTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACAGTAAGCATTTGATGATAATTTTTTTGTTTTGTTTTAAAGATCCATTCTTTTGTAGAATTGTAACTTGATGATTCTTGTCTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTG</genome_strand>
        <mrna_strand>TTTATTGTTAATGCATTACACGTATTACCTACCCTTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACA......................................................................................................................................................................................................................................................................................................................................ATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTTATTTTTTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTCAGAACAAGGATGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214121" ref_strand="+" ref_description="SGN-E214121 [cLEC-80-B16]">
      <seq>tttccttttcttcttccctatactagttttgtagctctatctgtcttgaggaatatcatatgtaattactttgttcggtaaacagtggacagtttccagatcagtttctcttaacaatttaaggctgggatttgggaatttgatgagatccataaagtgtcaagaaccaaagactaaattctttggtcttgggagcttcagtgattgtgttaattaaggctgaacaggttacaggaagatcctagtaaaagatccttgtgttgggtttgttttgtaagttagaacaaggatgtctgcagctcaagatcaactggagattaagtttagattgattgatggaacagatattgggcccaagagtttttctgcggctacaagcgtagcaaccttaaaggagaacatccttgctcagtggcccagagagaaggataatggtccgcggacagtaaaagatgttaagttaatcagcgctggaagaatattggaaaacaacagaacagtggctgaatgcagaagcccgctatgtgatattcccggaggagtcacgaccatgcatgtggttgttcaaccaccagctcaggagaaagagaaaaaagcgtcagatgacatgaagcagaataagtgcctctgcgttatactatgatattcagttccaacagggggatggctatatgcaagataaagactggtgggtgttgtttacaatactgaaagtgatgaagtagtaaacaacaacatgagtttgtggcattcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="111866" stop="115132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112166" g_stop="112281" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112282" i_stop="112607" i_length="326">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112608" g_stop="112913" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="422" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112914" i_stop="114269" i_length="1356">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114270" g_stop="114434" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="587" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114435" i_stop="114591" i_length="157">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.722" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114592" g_stop="114682" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="678" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114683" i_stop="114754" i_length="72">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114755" g_stop="114832" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="755" r_length="77" r_score="0.872"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E214121" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112166" e_stop="112281"/>
          <exon e_start="112608" e_stop="112913"/>
          <exon e_start="114270" e_stop="114434"/>
          <exon e_start="114592" e_stop="114682"/>
          <exon e_start="114755" e_stop="114832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACAGTAAGCATTTGATGATAATTTTTTTGTTTTGTTTTAAAGATCCATTCTTTTGTAGAATTGTAACTTGATGATTCTTGTCTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAGGTTAGTTTAGTTCTTGAATAGCTGATAAATTGTGTGTGAGATTTTCAATTACCCTAGATTTCTGTTGGTGGCTTGATTGCTTTAAGAACCGTAATCATGGTTGTTAAGGCTCTAATATTTTGGAGCTTATCATAGTCTATGATCTGTAGTTGTTACTTTTGTTAGATAATATAGCTCTGTGGATAGTTCCTTCACTTAAGTTCTCTACCGAAAAGTAATATGTATACAATTTGTAGGGATTCTGAATGATAAAAAAAATTGGCACATTGTTATTCAGATAGTTGAGGCGCTTTGCTGCTTCAATCAAATAGTGGTGGACTTTCGCTTGAGATTGTTTTAGGCGTCTTCCTCTAAAGGGATATTGGTTAAGAAAGTCGACAAAGTAGACTCTGATAGTGTTTAGATGACATGAAGCTCTGGCTAATCAAACCTTTCAACTTTTAGATGTGCTGATGCATTGTTTGTTATGCAAATATTGGATATTCACTTTTTTCTGATAGGACTTCTAATTTTAAGCATGTATTTTAGAAAGGAAAATTGAGAAGCCTAAAAGAATGATGTGTTAGTCCATATAATAAAACCAACATCTAATGAAAAGTCGTTTGATTAGGTCCCTGTAATAAAAACCGATATTTTCAATGCACCTAGTTCAATGGCAGTAAGTTCGTGCATGTCTTTCAGAATGTCCTATTTCATTCACGTGTTGCTAAGTATGTCAAATTCCTTGACTGAACTTTAAGGTTTGCACAGTTCACCGGAGCAGGTATCGAGTAAATCATGTTTTCTCAGCATTCGAGATGACTCTGAAAGAATTAGCTGCGATGCAAACAAAAATATATTGAATTAGAAAGGCATTATACATAAATCTGCTCTTTAACTTGGCTTCAAATATCATTTACGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAATAAATAGACACATATGTCCTACATGTCATCTTACATGTCATTTTTTGTCCTACGTGGTGTCTTACGTGTATTGTGTTATGTACGACTCATGTGTTTATTTATTTAAAAGTTGAATAGTTAAAGTGCTTGTTTGTGCATTATGAAAGTTGGAAGTCAAAATTAAAATTTAAAGCCAAGTTTAGGGTCCAATATATGTATTATGTCAATTAGAAACATGAGCTCTTTTCTTGAAATTCTTTTTTCATATTTTCAGATAATTTACCTGAATGTTGTGCACTTTCTCTCTGTTATCAAATATTTTCTGCTATTAATTTTCTTTCTATAGTCTTTTGTTAAGTATTGGGTTCAATCTTGTTACAAGTTTTCAAGTCATGTTTTCTGAGACATATATCTTATGTAATAGAGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAGGTCAGCTTAGATTTACTAAACATATCAACGCCATATAAAACAGTATTTACTGCCTTTAGGATGTTTGATTTCCATTCTGTGTTTTACGTTCTTTTTAGTTGTGTCGCTGTCTCTGAACAAAATGTTTGTTGTTTGAATTTTGCTACTGGTGAAACAGAGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAGGTAGGTAGTTGCTTTTCGTCATCGACAGATATCAAGGTCTGTAAACTGATGTTTTGGACCCTCTACTTTCAGATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCT</genome_strand>
        <mrna_strand>TTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACA......................................................................................................................................................................................................................................................................................................................................ATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAG.............................................................................................................................................................AGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAG........................................................................ATAAAGACTGGTGGGTGTTGTTTACAATACTGAAAGTGATGAAGTAGTAAACAAC-AACATGAGTTTGTGGCATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255448" ref_strand="+" ref_description="SGN-E255448 [cLEG-30-G15]">
      <seq>aggaatatcatatgtaattactttgttcggtaaacagtggacagtttccagatcagtttctcttaacaatttaaggctgggatttgggaatttgatgagatccataaagtgtcaagaaccaaagactaaaagaggtgggcttgggagcttcagtaaccgggtctgtttgcggatcacaggttacaggaagatcctagtaaaagatccttgagtagggtttgattcgtaagttagaacaaggatgtctgcagctcaagatcaactggagatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="111914" stop="113111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112214" g_stop="112281" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112282" i_stop="112607" i_length="326">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112608" g_stop="112811" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="272" r_length="204" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E255448" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112214" e_stop="112281"/>
          <exon e_start="112608" e_stop="112811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACAGTAAGCATTTGATGATAATTTTTTTGTTTTGTTTTAAAGATCCATTCTTTTGTAGAATTGTAACTTGATGATTCTTGTCTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGT-TAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTA</genome_strand>
        <mrna_strand>AGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACA......................................................................................................................................................................................................................................................................................................................................ATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAAAGAGGTGGGCTTGGGAGCTTCAGTAACCGGGTCTGTTTGCGGAT-CACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGAGTAGGGTTTGATTCGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309919" ref_strand="+" ref_description="SGN-E309919 [cLEZ-10-K8]">
      <seq>gtaattactttgttcggtaaacagtggacagtttccagatcagtttctcttaacaatttaaggctgggatttgggaatttgatgagatccataaagtgtcaagaaccaaagactaaattctttggtcttgggagcttcagtgattgtgttaattaaggctgaacaggttacaggaagatcctagtaaaagatccttgtgttgggtttgttttgtaagttagaacaaggatgtctgcagctcaagatcaactggagattaagtttagattgattgatggaacagatattgggcccaagagtttttctgcggctacaagcgtagcaaccttaaaggagaacatccttgctcagtggcccagagagaaggataatggtccgcggacagtaaaagatgttaagttaatcagcgctggaagaatattggaaaacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="111927" stop="114641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112227" g_stop="112281" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112282" i_stop="112607" i_length="326">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112608" g_stop="112913" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="361" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112914" i_stop="114269" i_length="1356">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114270" g_stop="114341" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="433" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E309919" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112227" e_stop="112281"/>
          <exon e_start="112608" e_stop="112913"/>
          <exon e_start="114270" e_stop="114341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACAGTAAGCATTTGATGATAATTTTTTTGTTTTGTTTTAAAGATCCATTCTTTTGTAGAATTGTAACTTGATGATTCTTGTCTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAGGTTAGTTTAGTTCTTGAATAGCTGATAAATTGTGTGTGAGATTTTCAATTACCCTAGATTTCTGTTGGTGGCTTGATTGCTTTAAGAACCGTAATCATGGTTGTTAAGGCTCTAATATTTTGGAGCTTATCATAGTCTATGATCTGTAGTTGTTACTTTTGTTAGATAATATAGCTCTGTGGATAGTTCCTTCACTTAAGTTCTCTACCGAAAAGTAATATGTATACAATTTGTAGGGATTCTGAATGATAAAAAAAATTGGCACATTGTTATTCAGATAGTTGAGGCGCTTTGCTGCTTCAATCAAATAGTGGTGGACTTTCGCTTGAGATTGTTTTAGGCGTCTTCCTCTAAAGGGATATTGGTTAAGAAAGTCGACAAAGTAGACTCTGATAGTGTTTAGATGACATGAAGCTCTGGCTAATCAAACCTTTCAACTTTTAGATGTGCTGATGCATTGTTTGTTATGCAAATATTGGATATTCACTTTTTTCTGATAGGACTTCTAATTTTAAGCATGTATTTTAGAAAGGAAAATTGAGAAGCCTAAAAGAATGATGTGTTAGTCCATATAATAAAACCAACATCTAATGAAAAGTCGTTTGATTAGGTCCCTGTAATAAAAACCGATATTTTCAATGCACCTAGTTCAATGGCAGTAAGTTCGTGCATGTCTTTCAGAATGTCCTATTTCATTCACGTGTTGCTAAGTATGTCAAATTCCTTGACTGAACTTTAAGGTTTGCACAGTTCACCGGAGCAGGTATCGAGTAAATCATGTTTTCTCAGCATTCGAGATGACTCTGAAAGAATTAGCTGCGATGCAAACAAAAATATATTGAATTAGAAAGGCATTATACATAAATCTGCTCTTTAACTTGGCTTCAAATATCATTTACGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAATAAATAGACACATATGTCCTACATGTCATCTTACATGTCATTTTTTGTCCTACGTGGTGTCTTACGTGTATTGTGTTATGTACGACTCATGTGTTTATTTATTTAAAAGTTGAATAGTTAAAGTGCTTGTTTGTGCATTATGAAAGTTGGAAGTCAAAATTAAAATTTAAAGCCAAGTTTAGGGTCCAATATATGTATTATGTCAATTAGAAACATGAGCTCTTTTCTTGAAATTCTTTTTTCATATTTTCAGATAATTTACCTGAATGTTGTGCACTTTCTCTCTGTTATCAAATATTTTCTGCTATTAATTTTCTTTCTATAGTCTTTTGTTAAGTATTGGGTTCAATCTTGTTACAAGTTTTCAAGTCATGTTTTCTGAGACATATATCTTATGTAATAGAGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACA</genome_strand>
        <mrna_strand>GTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACA......................................................................................................................................................................................................................................................................................................................................ATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730406" ref_strand="+" ref_description="SGN-E730406 [LA24AB08]">
      <seq>cgctttgcagtttgagtacttattttaatgttttcttgactttgggttgttaaaatttgtgatttcttggttaattttaactcaagattcttgaatttctttcttttgggttgtttaaattgtagtttgactatcttttcttgataatctaatctaattcaagaaagtgtaattatttacctgattttgtgtgggtttatgtatattttgtcggtgttaatattatgaattcatattttgttttttatgaagatttaaggctgggatttgggaatttgatgagatccataaagtgtcaagaaccaaagactaaattctttggtcttgggagcttcagtgattgtgttaattaaggctgaacaggttacaggaagatcctagtaaaagatccttgtgttgggtttgttttgtaagttagaacaaggatgtctgcagctcaagatcaactggagattaagtttagattgattgatggaacagatattgggcccaagagtttttctgcggctacaagcgtagcaaccttaaaggagaacatccttgctcagtggcccagagagaaggataatggtccgcggacagtaaaagatgttaagttaatcagcgctggaagaatattggaaaacaacagaacagtggctgaatgcagaagcccgctatgtgatattcccggaggagtcacgaccatgcatgtggttgttcaaccaccagctcaggagaaagagaaaaaagcgtcagatgacatgaagcagaataagtgcctctgcgttatactatgatattcagttccaacagggggatggctatatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="112059" stop="114980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112356" g_stop="112913" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112914" i_stop="114269" i_length="1356">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114270" g_stop="114434" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="723" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114435" i_stop="114591" i_length="157">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.722" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114592" g_stop="114680" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="812" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E730406" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112356" e_stop="112913"/>
          <exon e_start="114270" e_stop="114434"/>
          <exon e_start="114592" e_stop="114680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAGGTTAGTTTAGTTCTTGAATAGCTGATAAATTGTGTGTGAGATTTTCAATTACCCTAGATTTCTGTTGGTGGCTTGATTGCTTTAAGAACCGTAATCATGGTTGTTAAGGCTCTAATATTTTGGAGCTTATCATAGTCTATGATCTGTAGTTGTTACTTTTGTTAGATAATATAGCTCTGTGGATAGTTCCTTCACTTAAGTTCTCTACCGAAAAGTAATATGTATACAATTTGTAGGGATTCTGAATGATAAAAAAAATTGGCACATTGTTATTCAGATAGTTGAGGCGCTTTGCTGCTTCAATCAAATAGTGGTGGACTTTCGCTTGAGATTGTTTTAGGCGTCTTCCTCTAAAGGGATATTGGTTAAGAAAGTCGACAAAGTAGACTCTGATAGTGTTTAGATGACATGAAGCTCTGGCTAATCAAACCTTTCAACTTTTAGATGTGCTGATGCATTGTTTGTTATGCAAATATTGGATATTCACTTTTTTCTGATAGGACTTCTAATTTTAAGCATGTATTTTAGAAAGGAAAATTGAGAAGCCTAAAAGAATGATGTGTTAGTCCATATAATAAAACCAACATCTAATGAAAAGTCGTTTGATTAGGTCCCTGTAATAAAAACCGATATTTTCAATGCACCTAGTTCAATGGCAGTAAGTTCGTGCATGTCTTTCAGAATGTCCTATTTCATTCACGTGTTGCTAAGTATGTCAAATTCCTTGACTGAACTTTAAGGTTTGCACAGTTCACCGGAGCAGGTATCGAGTAAATCATGTTTTCTCAGCATTCGAGATGACTCTGAAAGAATTAGCTGCGATGCAAACAAAAATATATTGAATTAGAAAGGCATTATACATAAATCTGCTCTTTAACTTGGCTTCAAATATCATTTACGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAATAAATAGACACATATGTCCTACATGTCATCTTACATGTCATTTTTTGTCCTACGTGGTGTCTTACGTGTATTGTGTTATGTACGACTCATGTGTTTATTTATTTAAAAGTTGAATAGTTAAAGTGCTTGTTTGTGCATTATGAAAGTTGGAAGTCAAAATTAAAATTTAAAGCCAAGTTTAGGGTCCAATATATGTATTATGTCAATTAGAAACATGAGCTCTTTTCTTGAAATTCTTTTTTCATATTTTCAGATAATTTACCTGAATGTTGTGCACTTTCTCTCTGTTATCAAATATTTTCTGCTATTAATTTTCTTTCTATAGTCTTTTGTTAAGTATTGGGTTCAATCTTGTTACAAGTTTTCAAGTCATGTTTTCTGAGACATATATCTTATGTAATAGAGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAGGTCAGCTTAGATTTACTAAACATATCAACGCCATATAAAACAGTATTTACTGCCTTTAGGATGTTTGATTTCCATTCTGTGTTTTACGTTCTTTTTAGTTGTGTCGCTGTCTCTGAACAAAATGTTTGTTGTTTGAATTTTGCTACTGGTGAAACAGAGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCA</genome_strand>
        <mrna_strand>CGCTTTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAG.............................................................................................................................................................AGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354558" ref_strand="+" ref_description="SGN-E354558 [cTOS-17-I6]">
      <seq>atggaacagatattgggcccaagagtttttctgcggctacaagcgtagcaaccttaaaggagaacatccttgctcagtggcccagagagaaggataatggtccgcggacagtaaaagatgttaagttaatcagcgctggaagaatattggaaaacaacagaacagtggctgaatgcagaagcccgctatgtgatattcccggaggagtcacgaccatgcatgtggttgttcaaccaccagctcaggagaaagagaaaaaagcgtcagatgacatgaagcagaataagtgcctctgcgttatactatgatattcagttccaacagggggatggctatatgcaagataaagactggtggtggttgttaacaatactgaagttgatgaagtagtaacaaacaaacatgagttgttggcattccttccttgtattctcaagatcgtgtatggtctggtctcgtcattttcttttgtatttgctgctttcttttttagtgcttgatggattcaaagtccattctgcattgattgaaaatttgtgttgctgtcaagtataccatttcttttctgtaggactctgttgtctgtacaaaatacgaatgaactcgttggctgaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="112527" stop="115329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112827" g_stop="112913" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112914" i_stop="114269" i_length="1356">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114270" g_stop="114434" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="252" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114435" i_stop="114591" i_length="157">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.722" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114592" g_stop="114682" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="343" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114683" i_stop="114754" i_length="72">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114755" g_stop="115029" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="618" r_length="275" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E354558" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112827" e_stop="112913"/>
          <exon e_start="114270" e_stop="114434"/>
          <exon e_start="114592" e_stop="114682"/>
          <exon e_start="114755" e_stop="115029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAGGTTAGTTTAGTTCTTGAATAGCTGATAAATTGTGTGTGAGATTTTCAATTACCCTAGATTTCTGTTGGTGGCTTGATTGCTTTAAGAACCGTAATCATGGTTGTTAAGGCTCTAATATTTTGGAGCTTATCATAGTCTATGATCTGTAGTTGTTACTTTTGTTAGATAATATAGCTCTGTGGATAGTTCCTTCACTTAAGTTCTCTACCGAAAAGTAATATGTATACAATTTGTAGGGATTCTGAATGATAAAAAAAATTGGCACATTGTTATTCAGATAGTTGAGGCGCTTTGCTGCTTCAATCAAATAGTGGTGGACTTTCGCTTGAGATTGTTTTAGGCGTCTTCCTCTAAAGGGATATTGGTTAAGAAAGTCGACAAAGTAGACTCTGATAGTGTTTAGATGACATGAAGCTCTGGCTAATCAAACCTTTCAACTTTTAGATGTGCTGATGCATTGTTTGTTATGCAAATATTGGATATTCACTTTTTTCTGATAGGACTTCTAATTTTAAGCATGTATTTTAGAAAGGAAAATTGAGAAGCCTAAAAGAATGATGTGTTAGTCCATATAATAAAACCAACATCTAATGAAAAGTCGTTTGATTAGGTCCCTGTAATAAAAACCGATATTTTCAATGCACCTAGTTCAATGGCAGTAAGTTCGTGCATGTCTTTCAGAATGTCCTATTTCATTCACGTGTTGCTAAGTATGTCAAATTCCTTGACTGAACTTTAAGGTTTGCACAGTTCACCGGAGCAGGTATCGAGTAAATCATGTTTTCTCAGCATTCGAGATGACTCTGAAAGAATTAGCTGCGATGCAAACAAAAATATATTGAATTAGAAAGGCATTATACATAAATCTGCTCTTTAACTTGGCTTCAAATATCATTTACGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAATAAATAGACACATATGTCCTACATGTCATCTTACATGTCATTTTTTGTCCTACGTGGTGTCTTACGTGTATTGTGTTATGTACGACTCATGTGTTTATTTATTTAAAAGTTGAATAGTTAAAGTGCTTGTTTGTGCATTATGAAAGTTGGAAGTCAAAATTAAAATTTAAAGCCAAGTTTAGGGTCCAATATATGTATTATGTCAATTAGAAACATGAGCTCTTTTCTTGAAATTCTTTTTTCATATTTTCAGATAATTTACCTGAATGTTGTGCACTTTCTCTCTGTTATCAAATATTTTCTGCTATTAATTTTCTTTCTATAGTCTTTTGTTAAGTATTGGGTTCAATCTTGTTACAAGTTTTCAAGTCATGTTTTCTGAGACATATATCTTATGTAATAGAGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAGGTCAGCTTAGATTTACTAAACATATCAACGCCATATAAAACAGTATTTACTGCCTTTAGGATGTTTGATTTCCATTCTGTGTTTTACGTTCTTTTTAGTTGTGTCGCTGTCTCTGAACAAAATGTTTGTTGTTTGAATTTTGCTACTGGTGAAACAGAGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAGGTAGGTAGTTGCTTTTCGTCATCGACAGATATCAAGGTCTGTAAACTGATGTTTTGGACCCTCTACTTTCAGATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCTTCCTTGTATTCTCAAGATCGTGTATGGTCTGGTCTCGTCATTTTCTTTTGTATTTGCTGCTTTCTTTTTTAGTGCTTGATGGATTCAAAGTCCATTCTGCATTGATTGAAAATTTGTGTTGCTGTCAAGTATACCATTTCTTTTCTGTAGGACTCTGTTGTCTGTACAAAATACGAATGAACTCGTTGGCTGAATTC</genome_strand>
        <mrna_strand>ATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAG.............................................................................................................................................................AGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAG........................................................................ATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCTTCCTTGTATTCTCAAGATCGTGTATGGTCTGGTCTCGTCATTTTCTTTTGTATTTGCTGCTTTCTTTTTTAGTGCTTGATGGATTCAAAGTCCATTCTGCATTGATTGAAAATTTGTGTTGCTGTCAAGTATACCATTTCTTTTCTGTAGGACTCTGTTGTCTGTACAAAATACGAATGAACTCGTTGGCTGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335861" ref_strand="+" ref_description="SGN-E335861 [cTOE-6-P13]">
      <seq>ttaaaggagaacatccttgctcagtggcccagagagaaggataatggtccgcggacagtaaaagatgttaagttaatcagcgctggaagaatattggaaaacaacagaacagtggctgaatgcagaagcccgctatgtgatattcccggaggagtcacgaccatgcatgtggttgttcaaccaccagctcaggagaaagagaaaaaagcgtcagatgacatgaagcagaataagtgcctctgcgttatactatgatattcagttccaacagggggatggctatatgcaagataaagactggtggtggttgttaacaatactgaagttgatgaagtagtaacaaacaaacatgagttgttggcattccttccttgtattctcaagatcgtgtatggtctggtctcgccattttcttttgtatttgctgctttcttttttagtgcttgatggattcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="112580" stop="115220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112880" g_stop="112913" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112914" i_stop="114269" i_length="1356">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114270" g_stop="114434" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="199" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114435" i_stop="114591" i_length="157">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.722" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114592" g_stop="114682" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="290" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114683" i_stop="114754" i_length="72">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114755" g_stop="114920" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="456" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E335861" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112880" e_stop="112913"/>
          <exon e_start="114270" e_stop="114434"/>
          <exon e_start="114592" e_stop="114682"/>
          <exon e_start="114755" e_stop="114920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAGGTTAGTTTAGTTCTTGAATAGCTGATAAATTGTGTGTGAGATTTTCAATTACCCTAGATTTCTGTTGGTGGCTTGATTGCTTTAAGAACCGTAATCATGGTTGTTAAGGCTCTAATATTTTGGAGCTTATCATAGTCTATGATCTGTAGTTGTTACTTTTGTTAGATAATATAGCTCTGTGGATAGTTCCTTCACTTAAGTTCTCTACCGAAAAGTAATATGTATACAATTTGTAGGGATTCTGAATGATAAAAAAAATTGGCACATTGTTATTCAGATAGTTGAGGCGCTTTGCTGCTTCAATCAAATAGTGGTGGACTTTCGCTTGAGATTGTTTTAGGCGTCTTCCTCTAAAGGGATATTGGTTAAGAAAGTCGACAAAGTAGACTCTGATAGTGTTTAGATGACATGAAGCTCTGGCTAATCAAACCTTTCAACTTTTAGATGTGCTGATGCATTGTTTGTTATGCAAATATTGGATATTCACTTTTTTCTGATAGGACTTCTAATTTTAAGCATGTATTTTAGAAAGGAAAATTGAGAAGCCTAAAAGAATGATGTGTTAGTCCATATAATAAAACCAACATCTAATGAAAAGTCGTTTGATTAGGTCCCTGTAATAAAAACCGATATTTTCAATGCACCTAGTTCAATGGCAGTAAGTTCGTGCATGTCTTTCAGAATGTCCTATTTCATTCACGTGTTGCTAAGTATGTCAAATTCCTTGACTGAACTTTAAGGTTTGCACAGTTCACCGGAGCAGGTATCGAGTAAATCATGTTTTCTCAGCATTCGAGATGACTCTGAAAGAATTAGCTGCGATGCAAACAAAAATATATTGAATTAGAAAGGCATTATACATAAATCTGCTCTTTAACTTGGCTTCAAATATCATTTACGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAATAAATAGACACATATGTCCTACATGTCATCTTACATGTCATTTTTTGTCCTACGTGGTGTCTTACGTGTATTGTGTTATGTACGACTCATGTGTTTATTTATTTAAAAGTTGAATAGTTAAAGTGCTTGTTTGTGCATTATGAAAGTTGGAAGTCAAAATTAAAATTTAAAGCCAAGTTTAGGGTCCAATATATGTATTATGTCAATTAGAAACATGAGCTCTTTTCTTGAAATTCTTTTTTCATATTTTCAGATAATTTACCTGAATGTTGTGCACTTTCTCTCTGTTATCAAATATTTTCTGCTATTAATTTTCTTTCTATAGTCTTTTGTTAAGTATTGGGTTCAATCTTGTTACAAGTTTTCAAGTCATGTTTTCTGAGACATATATCTTATGTAATAGAGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAGGTCAGCTTAGATTTACTAAACATATCAACGCCATATAAAACAGTATTTACTGCCTTTAGGATGTTTGATTTCCATTCTGTGTTTTACGTTCTTTTTAGTTGTGTCGCTGTCTCTGAACAAAATGTTTGTTGTTTGAATTTTGCTACTGGTGAAACAGAGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAGGTAGGTAGTTGCTTTTCGTCATCGACAGATATCAAGGTCTGTAAACTGATGTTTTGGACCCTCTACTTTCAGATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCTTCCTTGTATTCTCAAGATCGTGTATGGTCTGGTCTCGTCATTTTCTTTTGTATTTGCTGCTTTCTTTTTTAGTGCTTGATGGATTCAA</genome_strand>
        <mrna_strand>TTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAG.............................................................................................................................................................AGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAG........................................................................ATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCTTCCTTGTATTCTCAAGATCGTGTATGGTCTGGTCTCGCCATTTTCTTTTGTATTTGCTGCTTTCTTTTTTAGTGCTTGATGGATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369294" ref_strand="+" ref_description="SGN-E369294 [TUS-25-O18](-)">
      <seq>taaaggaaaacatccttgctcagtggcccagagagaaggataatggtccgcggacagtaaaagatgttaagttaatcagcgctggaagaatattggaaaacaacagaacagtggctgaatgcagaagcccgctatgtgatattcccggaggagtcacgaccatgcatgtggttgttcaaccaccagctcaggagaaagagaaaaaagcgtcagatgacatgaagcagaataagtgcctctgcgttatactatgatattcagttccaacagggggatggctatatgcaagataaagactggtggtggttgttaacaatactgaagttgatgaagtagtaacaaacaaacatgagttgttggcattccttccttgtattctcaagatcgtgtatggtctggtctcgtcattttcttttgtatttgctgctttcttttttagtgcttgatggattcaaagtccattctgcattgattgaaaatttgtgttgctgtcaagtataccatttcttttctgtaggactctgttgtctgtacaaaatacgaatgaactcgttggctgaattcataatttaatcttgaatatcttcttatggtgatcaatgtataatatatagatacaaaaaaatgtcacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="112581" stop="115397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112881" g_stop="112913" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112914" i_stop="114269" i_length="1356">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114270" g_stop="114434" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="198" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114435" i_stop="114591" i_length="157">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.722" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114592" g_stop="114682" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="289" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114683" i_stop="114754" i_length="72">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114755" g_stop="115098" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="633" r_length="344" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="634" polyA_stop="644"/>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E369294" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112881" e_stop="112913"/>
          <exon e_start="114270" e_stop="114434"/>
          <exon e_start="114592" e_stop="114682"/>
          <exon e_start="114755" e_stop="115098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGAGAACATCCTTGCTCAGTGGCCCAGAGGTTAGTTTAGTTCTTGAATAGCTGATAAATTGTGTGTGAGATTTTCAATTACCCTAGATTTCTGTTGGTGGCTTGATTGCTTTAAGAACCGTAATCATGGTTGTTAAGGCTCTAATATTTTGGAGCTTATCATAGTCTATGATCTGTAGTTGTTACTTTTGTTAGATAATATAGCTCTGTGGATAGTTCCTTCACTTAAGTTCTCTACCGAAAAGTAATATGTATACAATTTGTAGGGATTCTGAATGATAAAAAAAATTGGCACATTGTTATTCAGATAGTTGAGGCGCTTTGCTGCTTCAATCAAATAGTGGTGGACTTTCGCTTGAGATTGTTTTAGGCGTCTTCCTCTAAAGGGATATTGGTTAAGAAAGTCGACAAAGTAGACTCTGATAGTGTTTAGATGACATGAAGCTCTGGCTAATCAAACCTTTCAACTTTTAGATGTGCTGATGCATTGTTTGTTATGCAAATATTGGATATTCACTTTTTTCTGATAGGACTTCTAATTTTAAGCATGTATTTTAGAAAGGAAAATTGAGAAGCCTAAAAGAATGATGTGTTAGTCCATATAATAAAACCAACATCTAATGAAAAGTCGTTTGATTAGGTCCCTGTAATAAAAACCGATATTTTCAATGCACCTAGTTCAATGGCAGTAAGTTCGTGCATGTCTTTCAGAATGTCCTATTTCATTCACGTGTTGCTAAGTATGTCAAATTCCTTGACTGAACTTTAAGGTTTGCACAGTTCACCGGAGCAGGTATCGAGTAAATCATGTTTTCTCAGCATTCGAGATGACTCTGAAAGAATTAGCTGCGATGCAAACAAAAATATATTGAATTAGAAAGGCATTATACATAAATCTGCTCTTTAACTTGGCTTCAAATATCATTTACGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAATAAATAGACACATATGTCCTACATGTCATCTTACATGTCATTTTTTGTCCTACGTGGTGTCTTACGTGTATTGTGTTATGTACGACTCATGTGTTTATTTATTTAAAAGTTGAATAGTTAAAGTGCTTGTTTGTGCATTATGAAAGTTGGAAGTCAAAATTAAAATTTAAAGCCAAGTTTAGGGTCCAATATATGTATTATGTCAATTAGAAACATGAGCTCTTTTCTTGAAATTCTTTTTTCATATTTTCAGATAATTTACCTGAATGTTGTGCACTTTCTCTCTGTTATCAAATATTTTCTGCTATTAATTTTCTTTCTATAGTCTTTTGTTAAGTATTGGGTTCAATCTTGTTACAAGTTTTCAAGTCATGTTTTCTGAGACATATATCTTATGTAATAGAGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAGGTCAGCTTAGATTTACTAAACATATCAACGCCATATAAAACAGTATTTACTGCCTTTAGGATGTTTGATTTCCATTCTGTGTTTTACGTTCTTTTTAGTTGTGTCGCTGTCTCTGAACAAAATGTTTGTTGTTTGAATTTTGCTACTGGTGAAACAGAGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAGGTAGGTAGTTGCTTTTCGTCATCGACAGATATCAAGGTCTGTAAACTGATGTTTTGGACCCTCTACTTTCAGATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCTTCCTTGTATTCTCAAGATCGTGTATGGTCTGGTCTCGTCATTTTCTTTTGTATTTGCTGCTTTCTTTTTTAGTGCTTGATGGATTCAAAGTCCATTCTGCATTGATTGAAAATTTGTGTTGCTGTCAAGTATACCATTTCTTTTCTGTAGGACTCTGTTGTCTGTACAAAATACGAATGAACTCGTTGGCTGAATTCATAATTTAATCTTGAATATCTTCTTATGGTGATCAATGTATAATATATAGATACAAAAAATTGTCACAC</genome_strand>
        <mrna_strand>TAAAGGAAAACATCCTTGCTCAGTGGCCCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAG.............................................................................................................................................................AGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAG........................................................................ATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCTTCCTTGTATTCTCAAGATCGTGTATGGTCTGGTCTCGTCATTTTCTTTTGTATTTGCTGCTTTCTTTTTTAGTGCTTGATGGATTCAAAGTCCATTCTGCATTGATTGAAAATTTGTGTTGCTGTCAAGTATACCATTTCTTTTCTGTAGGACTCTGTTGTCTGTACAAAATACGAATGAACTCGTTGGCTGAATTCATAATTTAATCTTGAATATCTTCTTATGGTGATCAATGTATAATATATAGATACAAAAAAATGTCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369848" ref_strand="+" ref_description="SGN-E369848 [TUS-25-O19](-)">
      <seq>ccttgctcaagtggcccaaaaaaaaggataatggtccgcggacagtaaaaaaatgttaagttaatcagcgctggaagaatattggaaaacaacagaacagtggctgaatgcagaagcccgctatgtgatattcccggaggagtcacgaccatgcatgtggttgttcaaccaccagctcaggagaaagagaaaaaagcgtcagatgacatgaagcagaataagtgcctctgcgttatactatgatattcagttccaacagggggatggctatatgcaagataaagactggtggtggttgttaacaatactgaagttgatgaagtagtaacaaacaaacatgagttgttggcattccttccttgtattctcaagatcgtgtatggtctggtctcgtcattttcttttgtatttgctgctttcttttttagtgcttgatggattcaaagtccattctgcattgattgaaaatttgtgttgctgtcaagtataccatttcttttctgtaggactctgttgtctgtacaaaatacgaatgaactcgttggctgaattcataatttaatcttgaatatcttcttatggtgatcaatgtataatatatagatacaaaaaattgtcacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="113965" stop="115397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114270" g_stop="114434" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="187" r_length="166" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114435" i_stop="114591" i_length="157">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.722" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114592" g_stop="114682" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="278" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114683" i_stop="114754" i_length="72">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114755" g_stop="115098" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="622" r_length="344" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="633"/>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E369848" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114270" e_stop="114434"/>
          <exon e_start="114592" e_stop="114682"/>
          <exon e_start="114755" e_stop="115098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGATAATGGTCCGCGGACAGT-AAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAGGTCAGCTTAGATTTACTAAACATATCAACGCCATATAAAACAGTATTTACTGCCTTTAGGATGTTTGATTTCCATTCTGTGTTTTACGTTCTTTTTAGTTGTGTCGCTGTCTCTGAACAAAATGTTTGTTGTTTGAATTTTGCTACTGGTGAAACAGAGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAGGTAGGTAGTTGCTTTTCGTCATCGACAGATATCAAGGTCTGTAAACTGATGTTTTGGACCCTCTACTTTCAGATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCTTCCTTGTATTCTCAAGATCGTGTATGGTCTGGTCTCGTCATTTTCTTTTGTATTTGCTGCTTTCTTTTTTAGTGCTTGATGGATTCAAAGTCCATTCTGCATTGATTGAAAATTTGTGTTGCTGTCAAGTATACCATTTCTTTTCTGTAGGACTCTGTTGTCTGTACAAAATACGAATGAACTCGTTGGCTGAATTCATAATTTAATCTTGAATATCTTCTTATGGTGATCAATGTATAATATATAGATACAAAAAATTGTCACAC</genome_strand>
        <mrna_strand>AAAAGGATAATGGTCCGCGGACAGTAAAAAAATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAG.............................................................................................................................................................AGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAG........................................................................ATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCTTCCTTGTATTCTCAAGATCGTGTATGGTCTGGTCTCGTCATTTTCTTTTGTATTTGCTGCTTTCTTTTTTAGTGCTTGATGGATTCAAAGTCCATTCTGCATTGATTGAAAATTTGTGTTGCTGTCAAGTATACCATTTCTTTTCTGTAGGACTCTGTTGTCTGTACAAAATACGAATGAACTCGTTGGCTGAATTCATAATTTAATCTTGAATATCTTCTTATGGTGATCAATGTATAATATATAGATACAAAAAATTGTCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355989" ref_strand="+" ref_description="SGN-E355989 [cLHT-21-D15]">
      <seq>taacttttccggcaaaacactctcctatccgctgaaactttgtcgtttttcttccttcttcaataacgttgagataacagaatagtacattttgttcaccggtatgtctaccgtgacgtcattttccggcgtacagttttgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccgtacctgaacttctcaggcaaatcgcgagttcttggcaagtgtaattcgttgaaactgaagaggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggttcaaggcttaccgaacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="115471" stop="117204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115770" g_stop="116123" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116124" i_stop="116807" i_length="684">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116808" g_stop="116904" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="449" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E355989" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115770" e_stop="116123"/>
          <exon e_start="116808" e_stop="116904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTTCCGGCAAAACACTCTCTCCTATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGC</genome_strand>
        <mrna_strand>TAACTTTTCCGGCAAAACA--CTCTCCTATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTTGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAATTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGTTCAAGGCTTACCGAACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355990" ref_strand="+" ref_description="SGN-E355990 [cLHT-21-D19]">
      <seq>taacttttccggcaaaacactctgctatccgctgaaactttggcgtttttcttccttcttcaataacgttgagataacacaatagtacattttgttcaccggtatgtctaccgtgacgtcattatccggcgtacagatgtgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccggacctgaacttctcaggcaaatcgcgagttcttggcaagtgtgattcgttgaaactgaagaggaaggatgtgttcttcaataggaaaactgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="115471" stop="116371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115770" g_stop="116071" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E355990" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115770" e_stop="116071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTTCCGGCAAAACACTCTCTCCTATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAA</genome_strand>
        <mrna_strand>TAACTTTTCCGGCAAAACA--CTCTGCTATCCGCTGAAACTTTGGCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACACAATAGTACATTTTGTTCACCGGTATGTCTACCGTGACGTCATTATCCGGCGTACAGATGTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGGACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTGATTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAATAGGAAAACTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740635" ref_strand="+" ref_description="SGN-E740635 [LC22BB11]">
      <seq>cttctatccgctgaaactttgtcgtttttcttccttcttcaataacgttgagataacagaatagtacatttggttcaccggtatgtctaccgtgacgtcattttccggcgtacagttttgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccgtacctgaacttctcaggcaaatcgcgagttcttggcaagtgtagttcgttgaaactgaagaggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggctcaaggcttaccgtacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgcatattctccaagacgggtgtagataatacccgccttttagaggctactgataagtttattagacaacaaccaaaggttattggtgagacagcaggttctatgttaggccgagagttggaaggtctgatgcagagagccagggagtacaagaaagagtatggtgattcctttgtgtcagttgagcatttggtgcttggcttcattcaagataaacgatttgggaagcaactgtttaatgatttccagatttccctgaagacactgaaaactgccattgaatccataaggggacgccaaaatgttattgatcaagatcctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="115493" stop="118879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115793" g_stop="116123" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116124" i_stop="116807" i_length="684">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116808" g_stop="117026" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="550" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117027" i_stop="118334" i_length="1308">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118335" g_stop="118572" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="788" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E740635" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115793" e_stop="116123"/>
          <exon e_start="116808" e_stop="117026"/>
          <exon e_start="118335" e_stop="118572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAGGTATGCTTCAGATCAACATAAAGTCTTCTGCTAATTATATGCCATGTTCATTTGTGCATCATTGGTTCTTTTCTTACTCCTGCTTAGATATGATTTGATGTTCAATTATCAAATCGGTGTTTTCAGGATCAAAATCGAATTATGGCCAATATTTTATTTTTGCTTCTTCTTCATTTGCAATCCATTGGAGTTTAGCACAACATTCTGCTTTGATCAGCTCTGCTGTTTTCATGTTAGTGACAGTCATTTTATCTTAAAAGGATCTAATGAACCATTTAGTCCACACATGACCATTTTCAAGCATGCTAGGTTTTTCTTGTAAAATGTTCATTTCTCAAGAATTTATCTGAATATGTGCATGCACTTCAATTTGTTCTCAGGTACAGGGCACTTTATTGTTGTAAAGAGTTGTCAGTGTTACTTAATTATTATGATGATGAGTTGTATGTTCTGCATATAACTTAAGTTTATGGACTATTTCTTCTGCATGATTTACCAAGAGGTCTCTTGTGTTGTTTTGTATTGTGTATCATATTCCACTGGAGTTTAACCAACAAGAAAATAGTTGGTAGTTAAAAATTCAAGAAGTCAATAGGTTAACGTACATATCCACTTTTAGAGCTAAAAACAATCATGTTTTTGCATAGGAAGTTCACATCCTAGCTGTGTCGAGCACACTTTGTAGCTCAACTTTGAAAAGACATGAGCTCAGGGAGCTTATCCTGGCTCATTTAGTGTTAACAAAACATCATATGTGTTTTTCTCCAGAACTATAAAAGGGTATTTACACTCCACTTTCAGGGTTCTATATAACCAACATAATTGATTGGATGGAAAAATAATTATTTCTATTTAGGATGTGATTCAGCTAAATAATTCAACAAAAGGAGCTTGCCCCTGGCTATAGATGAGCTTATAATCCAGCTTGATATCAACTATATCTGAACACCATATCTCCAAGCAAGCTAGAATTTGGCTCTTTCTCGTCTATAGCGGAGCTTGACTCAGCTCGTATAGTTGATGTATGCAGAACGTATGGAAACTTAGTCAGTGCTATGCACTTACGTTTCGATTCCATGGTAGTTTCGTCAACTGATTCTTGTACATTGTTCTTTAAGAGAGCACACATATTATAGGAAGCTTCCAACCACCAGTGATGCTGAGTCACTCAAATTAGTTCTTTTATGATATTACTTCCTCTCTCTTTAGATCACTTCTAATAACAATCAAACAACAAGCTGCTAAATACATTGTCCTCTCATGTACTATAGATTGCTGAATCATCTTCTTGGTTACACATCTTTCCAGGTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAG</genome_strand>
        <mrna_strand>CTTCTATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358927" ref_strand="+" ref_description="SGN-E358927 [cLHT-24-M22]">
      <seq>tcctatccgctgaaactttgtcgtttttcttccttcttcaataacgttgagataacagaatagtacattttgttcaccggtatgtctaccgtgacgtcattttccggcgtacagttttgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccgtacctgaacttctcaggcaaatcgcgagttcttggcaagtgtaattcgttgaaactgaagaggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggttcaaggcttaccgtacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="115494" stop="117241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115794" g_stop="116123" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116124" i_stop="116807" i_length="684">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116808" g_stop="116941" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="464" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E358927" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115794" e_stop="116123"/>
          <exon e_start="116808" e_stop="116941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCT</genome_strand>
        <mrna_strand>TCCTATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTTGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAATTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGTTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321655" ref_strand="+" ref_description="SGN-E321655 [cTOB-25-F2]">
      <seq>tcctatccgctgaaactttgtcgtttttcttccttcttcaataacgttgagataacagaatagtacatttggttcaccggtatgtctaccgtgacgtcattttccggcgtacagttttgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccgtacctgaacttctcaggcaaatcgcgagttcttggcaagtgtagttcgttgaaactgaagaggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggctcaaggcttaccgtacgttgtgatgcttcaaatggaaagatcactcagcaagattttacagaaatggcatgggcagcaattgttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="115494" stop="117156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115794" g_stop="116123" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116124" i_stop="116807" i_length="684">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116808" g_stop="116856" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="379" r_length="49" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E321655" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115794" e_stop="116123"/>
          <exon e_start="116808" e_stop="116856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCAT</genome_strand>
        <mrna_strand>TCCTATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGGCAGCAATTGTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739336" ref_strand="+" ref_description="SGN-E739336 [LC17AB08]">
      <seq>actctctgaaactttgtcgtttttcttccttcttcaataacgttgagataacagaatagtacatttggttcaccggtatgtctaccgtgacgtcattttccggcgtacagttttgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccgtacctgaacttctcaggcaaatcgcgagttcttggcaagtgtagttcgttgaaactgaagaggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggctcaaggcttaccgtacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgcatattctccaagacgggtgtagataatacccgccttttagaggctactgataagtttattagacaacaaccaaaggttattggtgagacagcaggttctatgttaggccgagagttggaaggtctgatgcagagagccagggagtacaagaaagagtatggtgattcctttgtgtcagttgagcatttggtgcttggcttcattcaagataaacgatttgggaagcaactgtttaatgatttccagatttccctgaagacactgaaaactgccattgaatccataaggggacgccaaaatgttattgatcaagatcctgaagggaagtatgaatcactagaaaaatatggaaaagacctgactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="115501" stop="119232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115798" g_stop="116123" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116124" i_stop="116807" i_length="684">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116808" g_stop="117026" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="545" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117027" i_stop="118334" i_length="1308">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118335" g_stop="118572" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="783" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118573" i_stop="118879" i_length="307">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118880" g_stop="118932" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="836" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E739336" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115798" e_stop="116123"/>
          <exon e_start="116808" e_stop="117026"/>
          <exon e_start="118335" e_stop="118572"/>
          <exon e_start="118880" e_stop="118932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAGGTATGCTTCAGATCAACATAAAGTCTTCTGCTAATTATATGCCATGTTCATTTGTGCATCATTGGTTCTTTTCTTACTCCTGCTTAGATATGATTTGATGTTCAATTATCAAATCGGTGTTTTCAGGATCAAAATCGAATTATGGCCAATATTTTATTTTTGCTTCTTCTTCATTTGCAATCCATTGGAGTTTAGCACAACATTCTGCTTTGATCAGCTCTGCTGTTTTCATGTTAGTGACAGTCATTTTATCTTAAAAGGATCTAATGAACCATTTAGTCCACACATGACCATTTTCAAGCATGCTAGGTTTTTCTTGTAAAATGTTCATTTCTCAAGAATTTATCTGAATATGTGCATGCACTTCAATTTGTTCTCAGGTACAGGGCACTTTATTGTTGTAAAGAGTTGTCAGTGTTACTTAATTATTATGATGATGAGTTGTATGTTCTGCATATAACTTAAGTTTATGGACTATTTCTTCTGCATGATTTACCAAGAGGTCTCTTGTGTTGTTTTGTATTGTGTATCATATTCCACTGGAGTTTAACCAACAAGAAAATAGTTGGTAGTTAAAAATTCAAGAAGTCAATAGGTTAACGTACATATCCACTTTTAGAGCTAAAAACAATCATGTTTTTGCATAGGAAGTTCACATCCTAGCTGTGTCGAGCACACTTTGTAGCTCAACTTTGAAAAGACATGAGCTCAGGGAGCTTATCCTGGCTCATTTAGTGTTAACAAAACATCATATGTGTTTTTCTCCAGAACTATAAAAGGGTATTTACACTCCACTTTCAGGGTTCTATATAACCAACATAATTGATTGGATGGAAAAATAATTATTTCTATTTAGGATGTGATTCAGCTAAATAATTCAACAAAAGGAGCTTGCCCCTGGCTATAGATGAGCTTATAATCCAGCTTGATATCAACTATATCTGAACACCATATCTCCAAGCAAGCTAGAATTTGGCTCTTTCTCGTCTATAGCGGAGCTTGACTCAGCTCGTATAGTTGATGTATGCAGAACGTATGGAAACTTAGTCAGTGCTATGCACTTACGTTTCGATTCCATGGTAGTTTCGTCAACTGATTCTTGTACATTGTTCTTTAAGAGAGCACACATATTATAGGAAGCTTCCAACCACCAGTGATGCTGAGTCACTCAAATTAGTTCTTTTATGATATTACTTCCTCTCTCTTTAGATCACTTCTAATAACAATCAAACAACAAGCTGCTAAATACATTGTCCTCTCATGTACTATAGATTGCTGAATCATCTTCTTGGTTACACATCTTTCCAGGTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAGGTAATTAGTTCTTTCTATAATTGGTGGACTACTTGCATATGTGGGTCTTGTCAATAAGTGCAAGAATTAAGACGTAGTTGCCCCTTTATGGACTATATTATGTTCATTACACTTGGATCTCCTCCCTTTCATGTGATACAGGGAGCTTCTTCCTAGTGTAGTCCTTAATGTTTTATACGTAGTTTGACTGGTATACACCATTAGATTATTTGTTAACAACAACCTTACTTTCCCAACACATGCTCGTCTGCAATATATCCTGTTAGCCTTTTCCATTTCTCAAATATCTTGTTTATCATTCTTGCAGATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCT</genome_strand>
        <mrna_strand>ACTCTCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAG...................................................................................................................................................................................................................................................................................................................ATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739072" ref_strand="+" ref_description="SGN-E739072 [LC16AB03]">
      <seq>ctctgctgaaactttgtcgtttttcttccttcttcaataacgttgagataacagaatagtacatttggttcaccggtatgtctaccgtgacgtcattttccggcgtacagttttgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccgtacctgaacttctcaggcaaatcgcgagttcttggcaagtgtagttcgttgaaactgaagaggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggctcaaggcttaccgtacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgcatattctccaagacgggtgtagataatacccgccttttagaggctactgataagtttattagacaacaaccaaaggttattggtgagacagcaggttctatgttaggccgagagttggaaggtctgatgcagagagccagggagtacaagaaagagtatggtgattcctttgtgtcagttgagcatttggtgcttggcttcattcaagataaacgatttgggaagcaactgtttaatgatttccagatttccctgaagacactgaaaactgccattgaatccataaggggacgccaaaatgttattgatcaagatcctgaagggaagtatgaatcactagaaaaatatggaaaagacctgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="115499" stop="119230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115798" g_stop="116123" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116124" i_stop="116807" i_length="684">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116808" g_stop="117026" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="545" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117027" i_stop="118334" i_length="1308">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118335" g_stop="118572" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="783" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118573" i_stop="118879" i_length="307">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118880" g_stop="118930" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="834" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E739072" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115798" e_stop="116123"/>
          <exon e_start="116808" e_stop="117026"/>
          <exon e_start="118335" e_stop="118572"/>
          <exon e_start="118880" e_stop="118930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAGGTATGCTTCAGATCAACATAAAGTCTTCTGCTAATTATATGCCATGTTCATTTGTGCATCATTGGTTCTTTTCTTACTCCTGCTTAGATATGATTTGATGTTCAATTATCAAATCGGTGTTTTCAGGATCAAAATCGAATTATGGCCAATATTTTATTTTTGCTTCTTCTTCATTTGCAATCCATTGGAGTTTAGCACAACATTCTGCTTTGATCAGCTCTGCTGTTTTCATGTTAGTGACAGTCATTTTATCTTAAAAGGATCTAATGAACCATTTAGTCCACACATGACCATTTTCAAGCATGCTAGGTTTTTCTTGTAAAATGTTCATTTCTCAAGAATTTATCTGAATATGTGCATGCACTTCAATTTGTTCTCAGGTACAGGGCACTTTATTGTTGTAAAGAGTTGTCAGTGTTACTTAATTATTATGATGATGAGTTGTATGTTCTGCATATAACTTAAGTTTATGGACTATTTCTTCTGCATGATTTACCAAGAGGTCTCTTGTGTTGTTTTGTATTGTGTATCATATTCCACTGGAGTTTAACCAACAAGAAAATAGTTGGTAGTTAAAAATTCAAGAAGTCAATAGGTTAACGTACATATCCACTTTTAGAGCTAAAAACAATCATGTTTTTGCATAGGAAGTTCACATCCTAGCTGTGTCGAGCACACTTTGTAGCTCAACTTTGAAAAGACATGAGCTCAGGGAGCTTATCCTGGCTCATTTAGTGTTAACAAAACATCATATGTGTTTTTCTCCAGAACTATAAAAGGGTATTTACACTCCACTTTCAGGGTTCTATATAACCAACATAATTGATTGGATGGAAAAATAATTATTTCTATTTAGGATGTGATTCAGCTAAATAATTCAACAAAAGGAGCTTGCCCCTGGCTATAGATGAGCTTATAATCCAGCTTGATATCAACTATATCTGAACACCATATCTCCAAGCAAGCTAGAATTTGGCTCTTTCTCGTCTATAGCGGAGCTTGACTCAGCTCGTATAGTTGATGTATGCAGAACGTATGGAAACTTAGTCAGTGCTATGCACTTACGTTTCGATTCCATGGTAGTTTCGTCAACTGATTCTTGTACATTGTTCTTTAAGAGAGCACACATATTATAGGAAGCTTCCAACCACCAGTGATGCTGAGTCACTCAAATTAGTTCTTTTATGATATTACTTCCTCTCTCTTTAGATCACTTCTAATAACAATCAAACAACAAGCTGCTAAATACATTGTCCTCTCATGTACTATAGATTGCTGAATCATCTTCTTGGTTACACATCTTTCCAGGTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAGGTAATTAGTTCTTTCTATAATTGGTGGACTACTTGCATATGTGGGTCTTGTCAATAAGTGCAAGAATTAAGACGTAGTTGCCCCTTTATGGACTATATTATGTTCATTACACTTGGATCTCCTCCCTTTCATGTGATACAGGGAGCTTCTTCCTAGTGTAGTCCTTAATGTTTTATACGTAGTTTGACTGGTATACACCATTAGATTATTTGTTAACAACAACCTTACTTTCCCAACACATGCTCGTCTGCAATATATCCTGTTAGCCTTTTCCATTTCTCAAATATCTTGTTTATCATTCTTGCAGATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTG</genome_strand>
        <mrna_strand>CTCTGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAG...................................................................................................................................................................................................................................................................................................................ATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737950" ref_strand="+" ref_description="SGN-E737950 [LC11DC06]">
      <seq>ctgaaactttgtcgtttttcttccttcttcaataacgttgagataacagaatagtacatttggttcaccggtatgtctaccgtgacgtcattttccggcgtacagttttgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccgtacctgaacttctcaggcaaatcgcgagttcttggcaagtgtagttcgttgaaactgaagaggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggctcaaggcttaccgtacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgcatattctccaagacgggtgtagataatacccgccttttagaggctactgataagtttattagacaacaaccaaaggttattggtgagacagcaggttctatgttaggccgagagttggaaggtctgatgcagagagccagggagtacaagaaagagtatggtgattcctttgtgtcagttgagcatttggtgcttggcttcattcaagtaaaacgatttgggaagcaactgtttaatgatttccagatttccctgaagacactgaaaactgccattgaatccataaggggacgccaaaatgttattgatcaagatcctgaaaggaagtatgaatcactagaaaaatatggaaaagacctgactgctatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="115503" stop="119237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115803" g_stop="116123" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116124" i_stop="116807" i_length="684">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116808" g_stop="117026" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="540" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117027" i_stop="118334" i_length="1308">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118335" g_stop="118572" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="778" r_length="238" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118573" i_stop="118879" i_length="307">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118880" g_stop="118937" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="836" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E737950" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115803" e_stop="116123"/>
          <exon e_start="116808" e_stop="117026"/>
          <exon e_start="118335" e_stop="118572"/>
          <exon e_start="118880" e_stop="118937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAGGTATGCTTCAGATCAACATAAAGTCTTCTGCTAATTATATGCCATGTTCATTTGTGCATCATTGGTTCTTTTCTTACTCCTGCTTAGATATGATTTGATGTTCAATTATCAAATCGGTGTTTTCAGGATCAAAATCGAATTATGGCCAATATTTTATTTTTGCTTCTTCTTCATTTGCAATCCATTGGAGTTTAGCACAACATTCTGCTTTGATCAGCTCTGCTGTTTTCATGTTAGTGACAGTCATTTTATCTTAAAAGGATCTAATGAACCATTTAGTCCACACATGACCATTTTCAAGCATGCTAGGTTTTTCTTGTAAAATGTTCATTTCTCAAGAATTTATCTGAATATGTGCATGCACTTCAATTTGTTCTCAGGTACAGGGCACTTTATTGTTGTAAAGAGTTGTCAGTGTTACTTAATTATTATGATGATGAGTTGTATGTTCTGCATATAACTTAAGTTTATGGACTATTTCTTCTGCATGATTTACCAAGAGGTCTCTTGTGTTGTTTTGTATTGTGTATCATATTCCACTGGAGTTTAACCAACAAGAAAATAGTTGGTAGTTAAAAATTCAAGAAGTCAATAGGTTAACGTACATATCCACTTTTAGAGCTAAAAACAATCATGTTTTTGCATAGGAAGTTCACATCCTAGCTGTGTCGAGCACACTTTGTAGCTCAACTTTGAAAAGACATGAGCTCAGGGAGCTTATCCTGGCTCATTTAGTGTTAACAAAACATCATATGTGTTTTTCTCCAGAACTATAAAAGGGTATTTACACTCCACTTTCAGGGTTCTATATAACCAACATAATTGATTGGATGGAAAAATAATTATTTCTATTTAGGATGTGATTCAGCTAAATAATTCAACAAAAGGAGCTTGCCCCTGGCTATAGATGAGCTTATAATCCAGCTTGATATCAACTATATCTGAACACCATATCTCCAAGCAAGCTAGAATTTGGCTCTTTCTCGTCTATAGCGGAGCTTGACTCAGCTCGTATAGTTGATGTATGCAGAACGTATGGAAACTTAGTCAGTGCTATGCACTTACGTTTCGATTCCATGGTAGTTTCGTCAACTGATTCTTGTACATTGTTCTTTAAGAGAGCACACATATTATAGGAAGCTTCCAACCACCAGTGATGCTGAGTCACTCAAATTAGTTCTTTTATGATATTACTTCCTCTCTCTTTAGATCACTTCTAATAACAATCAAACAACAAGCTGCTAAATACATTGTCCTCTCATGTACTATAGATTGCTGAATCATCTTCTTGGTTACACATCTTTCCAGGTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAGGTAATTAGTTCTTTCTATAATTGGTGGACTACTTGCATATGTGGGTCTTGTCAATAAGTGCAAGAATTAAGACGTAGTTGCCCCTTTATGGACTATATTATGTTCATTACACTTGGATCTCCTCCCTTTCATGTGATACAGGGAGCTTCTTCCTAGTGTAGTCCTTAATGTTTTATACGTAGTTTGACTGGTATACACCATTAGATTATTTGTTAACAACAACCTTACTTTCCCAACACATGCTCGTCTGCAATATATCCTGTTAGCCTTTTCCATTTCTCAAATATCTTGTTTATCATTCTTGCAGATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCTATGGC</genome_strand>
        <mrna_strand>CTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGTAAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAG...................................................................................................................................................................................................................................................................................................................ATCCTGAAAGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCTATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307228" ref_strand="+" ref_description="SGN-E307228 [cLEY-15-L12]">
      <seq>tgaaactttgtcgtttttcttccttcttcaataacgttgagataacagaatagtacatttggttcaccggtatgtctaccgtgacgtcattttccggcgtacagttttgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccgtacctgaacttctcaggcaaatcgcgagttcttggcaagtgtagttcgttgaaactgaagaggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggctcaaggcttaccgtacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgcatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="115504" stop="117257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115804" g_stop="116123" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116124" i_stop="116807" i_length="684">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116808" g_stop="116957" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="470" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E307228" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115804" e_stop="116123"/>
          <exon e_start="116808" e_stop="116957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTC</genome_strand>
        <mrna_strand>TGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331808" ref_strand="+" ref_description="SGN-E331808 [cTOD-7-G22]">
      <seq>tttttcttccttcttcaataacgttgagataacagaatagtacatttggttcaccggtatgtctaccgtgacgtcattttccggcgtacagttttgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccgtacctgaacttctcaggcaaatcgcgagttcttggcaagtgtagttcgttgaaactgaagaggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggctcaaggcttaccgtacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgcatattctccaagacgggtgtagataatacccgccttttagaggctactgataagtttattagaaacaaccaacggttattggtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="115517" stop="117333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115817" g_stop="116123" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116124" i_stop="116807" i_length="684">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116808" g_stop="117026" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="525" r_length="218" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E331808" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115817" e_stop="116123"/>
          <exon e_start="116808" e_stop="117026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAG</genome_strand>
        <mrna_strand>TTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGA-AACAACCAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740563" ref_strand="+" ref_description="SGN-E740563 [LC21DH06]">
      <seq>ctttatagattgcctttattcttccggcggccctggcgttgagattaccgaatagtgcagtttggttaaccggtatgtctaccgtgacgtcattttccggcgtacagttttgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccgtacctgaacttctcaggcaaatcgcgagttcttggcaagtgtagttcgttgaaactgaagaggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggctcaaggcttaccgtacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgcatattctccaagacgggtgtagataatacccgccttttagaggctactgataagtttattagacaacaaccaaaggttattggtgagacagcaggttctatgttaggccgagagttggaaggtctgatgcagagagcctgggagtacaagaaagagtatggtgattcctttgtgtcatttgagcatttggtgcttggcttccattcaagataaaacgatttgggaagcaactgtttaatgatttccagatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="115502" stop="118811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115839" g_stop="116123" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="323" r_length="286" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116124" i_stop="116807" i_length="684">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116808" g_stop="117026" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="542" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117027" i_stop="118334" i_length="1308">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118335" g_stop="118511" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="721" r_length="179" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E740563" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115839" e_stop="116123"/>
          <exon e_start="116808" e_stop="117026"/>
          <exon e_start="118335" e_stop="118511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAGATAACAGAATAGTACA-TTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAGGTATGCTTCAGATCAACATAAAGTCTTCTGCTAATTATATGCCATGTTCATTTGTGCATCATTGGTTCTTTTCTTACTCCTGCTTAGATATGATTTGATGTTCAATTATCAAATCGGTGTTTTCAGGATCAAAATCGAATTATGGCCAATATTTTATTTTTGCTTCTTCTTCATTTGCAATCCATTGGAGTTTAGCACAACATTCTGCTTTGATCAGCTCTGCTGTTTTCATGTTAGTGACAGTCATTTTATCTTAAAAGGATCTAATGAACCATTTAGTCCACACATGACCATTTTCAAGCATGCTAGGTTTTTCTTGTAAAATGTTCATTTCTCAAGAATTTATCTGAATATGTGCATGCACTTCAATTTGTTCTCAGGTACAGGGCACTTTATTGTTGTAAAGAGTTGTCAGTGTTACTTAATTATTATGATGATGAGTTGTATGTTCTGCATATAACTTAAGTTTATGGACTATTTCTTCTGCATGATTTACCAAGAGGTCTCTTGTGTTGTTTTGTATTGTGTATCATATTCCACTGGAGTTTAACCAACAAGAAAATAGTTGGTAGTTAAAAATTCAAGAAGTCAATAGGTTAACGTACATATCCACTTTTAGAGCTAAAAACAATCATGTTTTTGCATAGGAAGTTCACATCCTAGCTGTGTCGAGCACACTTTGTAGCTCAACTTTGAAAAGACATGAGCTCAGGGAGCTTATCCTGGCTCATTTAGTGTTAACAAAACATCATATGTGTTTTTCTCCAGAACTATAAAAGGGTATTTACACTCCACTTTCAGGGTTCTATATAACCAACATAATTGATTGGATGGAAAAATAATTATTTCTATTTAGGATGTGATTCAGCTAAATAATTCAACAAAAGGAGCTTGCCCCTGGCTATAGATGAGCTTATAATCCAGCTTGATATCAACTATATCTGAACACCATATCTCCAAGCAAGCTAGAATTTGGCTCTTTCTCGTCTATAGCGGAGCTTGACTCAGCTCGTATAGTTGATGTATGCAGAACGTATGGAAACTTAGTCAGTGCTATGCACTTACGTTTCGATTCCATGGTAGTTTCGTCAACTGATTCTTGTACATTGTTCTTTAAGAGAGCACACATATTATAGGAAGCTTCCAACCACCAGTGATGCTGAGTCACTCAAATTAGTTCTTTTATGATATTACTTCCTCTCTCTTTAGATCACTTCTAATAACAATCAAACAACAAGCTGCTAAATACATTGTCCTCTCATGTACTATAGATTGCTGAATCATCTTCTTGGTTACACATCTTTCCAGGTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTT-CATTCAAGAT-AAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCC</genome_strand>
        <mrna_strand>GTTGAGATTACCGAATAGTGCAGTTTGGTTAACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCTGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCATTTGAGCATTTGGTGCTTGGCTTCCATTCAAGATAAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546383" ref_strand="+" ref_description="SGN-E546383 [TUS-69-L13]">
      <seq>cctcgtgccggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggttcaaggcttaccgtacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgcatattctccaaggcgggtgtagataatacccgccttttagaggctactgataagtttattagacaacaaccaaaggttattggtgagacagcaggttctatgttaggccgagagttggaaggtttgatgcagagagccagggagtacaagaaagagtatggtgattcctttgtgtcagttgagcatttggtgcttggcttcattcaagataaacgatttgggaagcaactgtttaatgatttccagatttccctgaagacgctgaaaactgccattgaatccataaggggacgccaaaatgttattgatcaagatcctgaagggaagtatgaatcactagaaaaatatggaaaagacctgactgctatggctagagcggggaagcttgacccagttataggaagagatgatgagatacgtagatgcatacaaatcctctcaaggagaacaaagaataacccagtgttaattggtgagcctggagttggaaaactgcaatctctgaaggcttgctcagagattgtgcaaagagatgtacctcaggctttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="115738" stop="119501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116039" g_stop="116123" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="95" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116124" i_stop="116807" i_length="684">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116808" g_stop="117026" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="314" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117027" i_stop="118334" i_length="1308">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118335" g_stop="118572" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="552" r_length="238" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118573" i_stop="118879" i_length="307">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118880" g_stop="119075" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="746" r_length="194" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119076" i_stop="119247" i_length="172">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119248" g_stop="119294" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="792" r_length="46" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E546383" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116039" e_stop="116123"/>
          <exon e_start="116808" e_stop="117026"/>
          <exon e_start="118335" e_stop="118572"/>
          <exon e_start="118880" e_stop="119075"/>
          <exon e_start="119248" e_stop="119294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAGGTATGCTTCAGATCAACATAAAGTCTTCTGCTAATTATATGCCATGTTCATTTGTGCATCATTGGTTCTTTTCTTACTCCTGCTTAGATATGATTTGATGTTCAATTATCAAATCGGTGTTTTCAGGATCAAAATCGAATTATGGCCAATATTTTATTTTTGCTTCTTCTTCATTTGCAATCCATTGGAGTTTAGCACAACATTCTGCTTTGATCAGCTCTGCTGTTTTCATGTTAGTGACAGTCATTTTATCTTAAAAGGATCTAATGAACCATTTAGTCCACACATGACCATTTTCAAGCATGCTAGGTTTTTCTTGTAAAATGTTCATTTCTCAAGAATTTATCTGAATATGTGCATGCACTTCAATTTGTTCTCAGGTACAGGGCACTTTATTGTTGTAAAGAGTTGTCAGTGTTACTTAATTATTATGATGATGAGTTGTATGTTCTGCATATAACTTAAGTTTATGGACTATTTCTTCTGCATGATTTACCAAGAGGTCTCTTGTGTTGTTTTGTATTGTGTATCATATTCCACTGGAGTTTAACCAACAAGAAAATAGTTGGTAGTTAAAAATTCAAGAAGTCAATAGGTTAACGTACATATCCACTTTTAGAGCTAAAAACAATCATGTTTTTGCATAGGAAGTTCACATCCTAGCTGTGTCGAGCACACTTTGTAGCTCAACTTTGAAAAGACATGAGCTCAGGGAGCTTATCCTGGCTCATTTAGTGTTAACAAAACATCATATGTGTTTTTCTCCAGAACTATAAAAGGGTATTTACACTCCACTTTCAGGGTTCTATATAACCAACATAATTGATTGGATGGAAAAATAATTATTTCTATTTAGGATGTGATTCAGCTAAATAATTCAACAAAAGGAGCTTGCCCCTGGCTATAGATGAGCTTATAATCCAGCTTGATATCAACTATATCTGAACACCATATCTCCAAGCAAGCTAGAATTTGGCTCTTTCTCGTCTATAGCGGAGCTTGACTCAGCTCGTATAGTTGATGTATGCAGAACGTATGGAAACTTAGTCAGTGCTATGCACTTACGTTTCGATTCCATGGTAGTTTCGTCAACTGATTCTTGTACATTGTTCTTTAAGAGAGCACACATATTATAGGAAGCTTCCAACCACCAGTGATGCTGAGTCACTCAAATTAGTTCTTTTATGATATTACTTCCTCTCTCTTTAGATCACTTCTAATAACAATCAAACAACAAGCTGCTAAATACATTGTCCTCTCATGTACTATAGATTGCTGAATCATCTTCTTGGTTACACATCTTTCCAGGTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAGGTAATTAGTTCTTTCTATAATTGGTGGACTACTTGCATATGTGGGTCTTGTCAATAAGTGCAAGAATTAAGACGTAGTTGCCCCTTTATGGACTATATTATGTTCATTACACTTGGATCTCCTCCCTTTCATGTGATACAGGGAGCTTCTTCCTAGTGTAGTCCTTAATGTTTTATACGTAGTTTGACTGGTATACACCATTAGATTATTTGTTAACAACAACCTTACTTTCCCAACACATGCTCGTCTGCAATATATCCTGTTAGCCTTTTCCATTTCTCAAATATCTTGTTTATCATTCTTGCAGATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCTATGGCTAGAGCGGGGAAGCTTGACCCAGTTATAGGAAGAGATGATGAGATACGTAGATGCATACAAATCCTCTCAAGGAGAACAAAGAATAACCCAGTGTTAATTGGTGAGCCTGGAGTTGGGAAAACTGCAATCTCTGAAGGGTAAGTAAATTCTTCTTATTGAGCAGTAGAGCGGGAGTTGGAGCATGTGATTTTAAATTTTTATTTGTATGTTTCATTTGGAACATGTTCCATTGGTCTCAATTTGTTATATTTTTTCAAAAAATACTTATCCATTGCGTATAACTTATATTCTTCTCTTCCTGTTTGATAGGCTTGCTCAGAGAATTGTGCAAGGAGATGTACCTCAGGCTTTGATGA</genome_strand>
        <mrna_strand>GAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGTTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGGCGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTTTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACGCTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAG...................................................................................................................................................................................................................................................................................................................ATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCTATGGCTAGAGCGGGGAAGCTTGACCCAGTTATAGGAAGAGATGATGAGATACGTAGATGCATACAAATCCTCTCAAGGAGAACAAAGAATAACCCAGTGTTAATTGGTGAGCCTGGAGTT-GGAAAACTGCAATCTCTGAA-G............................................................................................................................................................................GCTTGCTCAGAG-ATTGTGCAAAGAGATGTACCTCAGGCTTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738116" ref_strand="+" ref_description="SGN-E738116 [LC12BG08]">
      <seq>gataaactttctcagggctcaaggcttaccgtacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgcatattctccaagacgggtgtagataatacccgccttttagaggctactgataagtttattagacaacaaccaaaggttattggtgagacagcaggttctatgttaggccgagagttggaaggtctgatgcagagagccagggagtacaagaaagagtatggtgattcctttgtgtcagttgagcatttggtgcttggcttcattcaagataaacgatttgggaagcaactgtttaatgatttccagatttccctgaagacactgaaaactgccattgaatccataaggggacgccaaaatgttattgatcaagatcctgaagggaagtatgaatcactagaaaaatatggaaaagacctgactgctatggctagagcggggaagcttgacccagttataggaagagatgatgagatacgtagatgcatacaaatcctctcaaggagaacaaagaataacccagtgttaattggtgagcctggagttgggaaaactgcaatctctgaagggcttgctcagagaattgtgcaaggagatgtacctcaggctttgatgaatcgaaagttgatatctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="115767" stop="119501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116067" g_stop="116123" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116124" i_stop="116807" i_length="684">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116808" g_stop="117026" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="276" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117027" i_stop="118334" i_length="1308">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118335" g_stop="118572" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="514" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118573" i_stop="118879" i_length="307">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118880" g_stop="119075" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="710" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119076" i_stop="119247" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119248" g_stop="119302" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="765" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="119303" i_stop="119390" i_length="88">
            <donor d_prob="0.386" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119391" g_stop="119403" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="778" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E738116" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116067" e_stop="116123"/>
          <exon e_start="116808" e_stop="117026"/>
          <exon e_start="118335" e_stop="118572"/>
          <exon e_start="118880" e_stop="119075"/>
          <exon e_start="119248" e_stop="119302"/>
          <exon e_start="119391" e_stop="119403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAGGTATGCTTCAGATCAACATAAAGTCTTCTGCTAATTATATGCCATGTTCATTTGTGCATCATTGGTTCTTTTCTTACTCCTGCTTAGATATGATTTGATGTTCAATTATCAAATCGGTGTTTTCAGGATCAAAATCGAATTATGGCCAATATTTTATTTTTGCTTCTTCTTCATTTGCAATCCATTGGAGTTTAGCACAACATTCTGCTTTGATCAGCTCTGCTGTTTTCATGTTAGTGACAGTCATTTTATCTTAAAAGGATCTAATGAACCATTTAGTCCACACATGACCATTTTCAAGCATGCTAGGTTTTTCTTGTAAAATGTTCATTTCTCAAGAATTTATCTGAATATGTGCATGCACTTCAATTTGTTCTCAGGTACAGGGCACTTTATTGTTGTAAAGAGTTGTCAGTGTTACTTAATTATTATGATGATGAGTTGTATGTTCTGCATATAACTTAAGTTTATGGACTATTTCTTCTGCATGATTTACCAAGAGGTCTCTTGTGTTGTTTTGTATTGTGTATCATATTCCACTGGAGTTTAACCAACAAGAAAATAGTTGGTAGTTAAAAATTCAAGAAGTCAATAGGTTAACGTACATATCCACTTTTAGAGCTAAAAACAATCATGTTTTTGCATAGGAAGTTCACATCCTAGCTGTGTCGAGCACACTTTGTAGCTCAACTTTGAAAAGACATGAGCTCAGGGAGCTTATCCTGGCTCATTTAGTGTTAACAAAACATCATATGTGTTTTTCTCCAGAACTATAAAAGGGTATTTACACTCCACTTTCAGGGTTCTATATAACCAACATAATTGATTGGATGGAAAAATAATTATTTCTATTTAGGATGTGATTCAGCTAAATAATTCAACAAAAGGAGCTTGCCCCTGGCTATAGATGAGCTTATAATCCAGCTTGATATCAACTATATCTGAACACCATATCTCCAAGCAAGCTAGAATTTGGCTCTTTCTCGTCTATAGCGGAGCTTGACTCAGCTCGTATAGTTGATGTATGCAGAACGTATGGAAACTTAGTCAGTGCTATGCACTTACGTTTCGATTCCATGGTAGTTTCGTCAACTGATTCTTGTACATTGTTCTTTAAGAGAGCACACATATTATAGGAAGCTTCCAACCACCAGTGATGCTGAGTCACTCAAATTAGTTCTTTTATGATATTACTTCCTCTCTCTTTAGATCACTTCTAATAACAATCAAACAACAAGCTGCTAAATACATTGTCCTCTCATGTACTATAGATTGCTGAATCATCTTCTTGGTTACACATCTTTCCAGGTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAGGTAATTAGTTCTTTCTATAATTGGTGGACTACTTGCATATGTGGGTCTTGTCAATAAGTGCAAGAATTAAGACGTAGTTGCCCCTTTATGGACTATATTATGTTCATTACACTTGGATCTCCTCCCTTTCATGTGATACAGGGAGCTTCTTCCTAGTGTAGTCCTTAATGTTTTATACGTAGTTTGACTGGTATACACCATTAGATTATTTGTTAACAACAACCTTACTTTCCCAACACATGCTCGTCTGCAATATATCCTGTTAGCCTTTTCCATTTCTCAAATATCTTGTTTATCATTCTTGCAGATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCTATGGCTAGAGCGGGGAAGCTTGACCCAGTTATAGGAAGAGATGATGAGATACGTAGATGCATACAAATCCTCTCAAGGAGAACAAAGAATAACCCAGTGTTAATTGGTGAGCCTGGAGTTGGGAAAACTGCAATCTCTGAAGGGTAAGTAAATTCTTCTTATTGAGCAGTAGAGCGGGAGTTGGAGCATGTGATTTTAAATTTTTATTTGTATGTTTCATTTGGAACATGTTCCATTGGTCTCAATTTGTTATATTTTTTCAAAAAATACTTATCCATTGCGTATAACTTATATTCTTCTCTTCCTGTTTGATAGGCTTGCTCAGAGAATTGTGCAAGGAGATGTACCTCAGGCTTTGATGAATCGAAGGGTTAGTGATGAAGGGAATTTCTGTTGCATTCACCTGACTTATGAAAGAAAGTATTTTATCAATTAACATGTTTGCGTCCTCTGTGCAGTTGATATCTCTTG</genome_strand>
        <mrna_strand>GATAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAG...................................................................................................................................................................................................................................................................................................................ATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCTATGGCTAGAGCGGGGAAGCTTGACCCAGTTATAGGAAGAGATGATGAGATACGTAGATGCATACAAATCCTCTCAAGGAGAACAAAGAATAACCCAGTGTTAATTGGTGAGCCTGGAGTTGGGAAAACTGCAATCTCTGAAGG............................................................................................................................................................................GCTTGCTCAGAGAATTGTGCAAGGAGATGTACCTCAGGCTTTGATGAATCGAAAG........................................................................................TTGATATCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358768" ref_strand="+" ref_description="SGN-E358768 [cLHT-24-C10]">
      <seq>agcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgcatattctccaaggcgggtgtagataatacccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0025E22-LbUfe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0025E22.1" temp_strand="+" temp_description="C02SLm0025E22.1  AC215476.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0025E22 sequenced_by:kribb upload_account_name:korea">
        <position start="116515" stop="117283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116815" g_stop="116983" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0025E22.1" gen_strand="+" ref_id="SGN-E358768" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>169</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0025E22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116815" e_stop="116983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCG</genome_strand>
        <mrna_strand>AGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGGCGGGTGTAGATAATACCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>158</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2023" PGL_stop="1326"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2023" e_stop="1326"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2023" e_stop="1326" e_length="698"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2023" stop="1326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2022" stop="1467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284080" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATGCACGTTGCAAATATTGCCAGTACGAATTGACCAATTCAAATTAAATAAGCTGAGTACTATTGATACTTGAAAAGGAAACATCAATAGTCAGAATTATTTATCTTATTCACGCATGACTCAAACATGTCCTAGACATTTTCTTGATACCAAAAATCACTTCAGCTCCTGGTGTTGGCGTAATCCTTTGGTTCGTCATCGTCATCCCTGTAGTTCCCTTCTGATGTTTCCTCTCCGAGATGTTCATTTACAGATTGAATTCCCTGATCTGCACTAACCTGTTCTTGGCTTCCATTATATGATGCTTCAGATCTCCCACCAAATCCCGTGTTAGCGAAGCTATTATTATTGTTACTAGGAGCTCCACCAAAGTCATTCCCACTGTTGCCACCACCATAACCACCTGAGAAACTACTGCCTTGACCAGAATAATTGATGTTTGGAGTGCTGCTTCCGTAGTTGCCACCCTCAACAGGGGAACTGTTGTTCCCATAGCTGCTACTACCACCTCCATAGCTACCGTAGCCTCCAGCAGAACTGTGACCACTAGAAAATCCACCACCGTAATTGTTGGTTTGGTAACCTCCAGAACCTGCAAAATTTCTGCCTTCCCCCCCGCCATAGTTATAGCCACTACTGCTACCGTAGCCACCTCCTCCAGCAGAATTGTAGCCACCTCCTCCAGGAGAATTGTA</gDNA_template>
            <first_frame> Q  M  H  V  A  N  I  A  S  T  N  *  P  I  Q  I  K  *  A  E  Y  Y  *  Y  L  K  R  K  H  Q  *  S  E  L  F  I  L  F  T  H  D  S  N  M  S  *  T  F  S  *  Y  Q  K  S  L  Q  L  L  V  L  A  *  S  F  G  S  S  S  S  S  L  *  F  P  S  D  V  S  S  P  R  C  S  F  T  D  *  I  P  *  S  A  L  T  C  S  W  L  P  L  Y  D  A  S  D  L  P  P  N  P  V  L  A  K  L  L  L  L  L  L  G  A  P  P  K  S  F  P  L  L  P  P  P  *  P  P  E  K  L  L  P  *  P  E  *  L  M  F  G  V  L  L  P  *  L  P  P  S  T  G  E  L  L  F  P  *  L  L  L  P  P  P  *  L  P  *  P  P  A  E  L  *  P  L  E  N  P  P  P  *  L  L  V  W  *  P  P  E  P  A  K  F  L  P  S  P  P  P  *  L  *  P  L  L  L  P  *  P  P  P  P  A  E  L  *  P  P  P  P  G  E  L   </first_frame>
            <second_frame>  K  C  T  L  Q  I  L  P  V  R  I  D  Q  F  K  L  N  K  L  S  T  I  D  T  *  K  G  N  I  N  S  Q  N  Y  L  S  Y  S  R  M  T  Q  T  C  P  R  H  F  L  D  T  K  N  H  F  S  S  W  C  W  R  N  P  L  V  R  H  R  H  P  C  S  S  L  L  M  F  P  L  R  D  V  H  L  Q  I  E  F  P  D  L  H  *  P  V  L  G  F  H  Y  M  M  L  Q  I  S  H  Q  I  P  C  *  R  S  Y  Y  Y  C  Y  *  E  L  H  Q  S  H  S  H  C  C  H  H  H  N  H  L  R  N  Y  C  L  D  Q  N  N  *  C  L  E  C  C  F  R  S  C  H  P  Q  Q  G  N  C  C  S  H  S  C  Y  Y  H  L  H  S  Y  R  S  L  Q  Q  N  C  D  H  *  K  I  H  H  R  N  C  W  F  G  N  L  Q  N  L  Q  N  F  C  L  P  P  R  H  S  Y  S  H  Y  C  Y  R  S  H  L  L  Q  Q  N  C  S  H  L  L  Q  E  N  C  </second_frame>
            <third_frame>   N  A  R  C  K  Y  C  Q  Y  E  L  T  N  S  N  *  I  S  *  V  L  L  I  L  E  K  E  T  S  I  V  R  I  I  Y  L  I  H  A  *  L  K  H  V  L  D  I  F  L  I  P  K  I  T  S  A  P  G  V  G  V  I  L  W  F  V  I  V  I  P  V  V  P  F  *  C  F  L  S  E  M  F  I  Y  R  L  N  S  L  I  C  T  N  L  F  L  A  S  I  I  *  C  F  R  S  P  T  K  S  R  V  S  E  A  I  I  I  V  T  R  S  S  T  K  V  I  P  T  V  A  T  T  I  T  T  *  E  T  T  A  L  T  R  I  I  D  V  W  S  A  A  S  V  V  A  T  L  N  R  G  T  V  V  P  I  A  A  T  T  T  S  I  A  T  V  A  S  S  R  T  V  T  T  R  K  S  T  T  V  I  V  G  L  V  T  S  R  T  C  K  I  S  A  F  P  P  A  I  V  I  A  T  T  A  T  V  A  T  S  S  S  R  I  V  A  T  S  S  R  R  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1613" stop="1326"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETTALTRIIDVWSAASVVATLNRGTVVPIAATTTSIATVASSRTVTTRKSTTVIVGLVTSRTCKISAFPPAIVIATTATVATSSSRIVATSSRRIV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1947" stop="1744"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGNINSQNYLSYSRMTQTCPRHFLDTKNHFSSWCWRNPLVRHRHPCSSLLMFPLRDVHLQIEFPDLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="15823" PGL_stop="18821"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15823" e_stop="16043"/>
            <exon e_start="16623" e_stop="16723"/>
            <exon e_start="17544" e_stop="17650"/>
            <exon e_start="18137" e_stop="18172"/>
            <exon e_start="18254" e_stop="18339"/>
            <exon e_start="18666" e_stop="18733"/>
            <exon e_start="18814" e_stop="18821"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.678" e_score="1.000"/>
          <exon-intron don_prob="0.377" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.736" acc_prob="0.580" e_score="0.985"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15823" e_stop="16043" e_length="221"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16044" i_stop="16622" i_length="579"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16623" e_stop="16723" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16724" i_stop="17543" i_length="820"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17544" e_stop="17650" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.983">
            <gDNA_intron_boundary i_start="17651" i_stop="18136" i_length="486"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18137" e_stop="18172" e_length="36"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.678">
            <gDNA_intron_boundary i_start="18173" i_stop="18253" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18254" e_stop="18339" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.377" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18340" i_stop="18665" i_length="326"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="18666" e_stop="18733" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.736" acc_prob="0.580">
            <gDNA_intron_boundary i_start="18734" i_stop="18813" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18814" e_stop="18821" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15823" stop="16043"/>
              <exon start="16623" stop="16723"/>
              <exon start="17544" stop="17650"/>
              <exon start="18137" stop="18172"/>
              <exon start="18254" stop="18339"/>
              <exon start="18666" stop="18733"/>
              <exon start="18814" stop="18821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328641" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACCCTCACACTCCGCACCCTTCTCTCTCTCTACACAATACTTTTTTAATGGCGGGTATGGACATTGATGGCAACGTTGAAGAGGCTGCAAGGCGTGTACAGGTCCGGTTCGTCACGAAGTTGAAAGCACCCTTTAAGGCTCCGCCTACTTCTATTGCTATTCCCTCTAATCTTACCCGATTGGGCCTCTCTTCCATCGTCAACAACCTCCTTAAAGCCG : GAAATGATGATTGGAATCCCGAGCCTTTTGATTTTCTCATTGATGGGGAACTGGTCCGCATGTCACTTGAAGAGTTTCTCCTTGCCAAGGGCATTTCAGCT : GAGAAAATATTGGAGATTGAGTACATTAGAGCTGTGGCTCCGAGGAAAGAAGAAGAGCCATCTTTGCATGACGATTGGGTCAGTGCAGTTGATGGTTCTAATTCCAT : GTTTGTTGTGACTGGATGTTATGATGGTTTTGGAAG : AATATGGATGGCTGCTGGATCTTGTACGCATCTACTGGAGGGCCATACTGATGCAATTACTTCTGTTTGTGTTGTCAAACCAAGAG : TGGCTCAAAATGGTGCTGATCAAATAGTCGCTACGGCTTCCAAGGATAGGACACTGCGTCTCTGGAAG : TTTGATGC</gDNA_template>
            <first_frame> L  P  S  H  S  A  P  F  S  L  S  T  Q  Y  F  F  N  G  G  Y  G  H  *  W  Q  R  *  R  G  C  K  A  C  T  G  P  V  R  H  E  V  E  S  T  L  *  G  S  A  Y  F  Y  C  Y  S  L  *  S  Y  P  I  G  P  L  F  H  R  Q  Q  P  P  *  S  R :   K  *  *  L  E  S  R  A  F  *  F  S  H  *  W  G  T  G  P  H  V  T  *  R  V  S  P  C  Q  G  H  F  S   : *  E  N  I  G  D  *  V  H  *  S  C  G  S  E  E  R  R  R  A  I  F  A  *  R  L  G  Q  C  S  *  W  F  *  F  H  :  V  C  C  D  W  M  L  *  W  F  W  K  :  N  M  D  G  C  W  I  L  Y  A  S  T  G  G  P  Y  *  C  N  Y  F  C  L  C  C  Q  T  K  S :   G  S  K  W  C  *  S  N  S  R  Y  G  F  Q  G  *  D  T  A  S  L  E   : V  *  C </first_frame>
            <second_frame>  Y  P  H  T  P  H  P  S  L  S  L  H  N  T  F  L  M  A  G  M  D  I  D  G  N  V  E  E  A  A  R  R  V  Q  V  R  F  V  T  K  L  K  A  P  F  K  A  P  P  T  S  I  A  I  P  S  N  L  T  R  L  G  L  S  S  I  V  N  N  L  L  K  A   : G  N  D  D  W  N  P  E  P  F  D  F  L  I  D  G  E  L  V  R  M  S  L  E  E  F  L  L  A  K  G  I  S  A  :  E  K  I  L  E  I  E  Y  I  R  A  V  A  P  R  K  E  E  E  P  S  L  H  D  D  W  V  S  A  V  D  G  S  N  S  M :   F  V  V  T  G  C  Y  D  G  F  G  R :   I  W  M  A  A  G  S  C  T  H  L  L  E  G  H  T  D  A  I  T  S  V  C  V  V  K  P  R   : V  A  Q  N  G  A  D  Q  I  V  A  T  A  S  K  D  R  T  L  R  L  W  K  :  F  D   </second_frame>
            <third_frame>   T  L  T  L  R  T  L  L  S  L  Y  T  I  L  F  *  W  R  V  W  T  L  M  A  T  L  K  R  L  Q  G  V  Y  R  S  G  S  S  R  S  *  K  H  P  L  R  L  R  L  L  L  L  L  F  P  L  I  L  P  D  W  A  S  L  P  S  S  T  T  S  L  K  P  :  E  M  M  I  G  I  P  S  L  L  I  F  S  L  M  G  N  W  S  A  C  H  L  K  S  F  S  L  P  R  A  F  Q  L :   R  K  Y  W  R  L  S  T  L  E  L  W  L  R  G  K  K  K  S  H  L  C  M  T  I  G  S  V  Q  L  M  V  L  I  P   : C  L  L  *  L  D  V  M  M  V  L  E   : E  Y  G  W  L  L  D  L  V  R  I  Y  W  R  A  I  L  M  Q  L  L  L  F  V  L  S  N  Q  E  :  W  L  K  M  V  L  I  K  *  S  L  R  L  P  R  I  G  H  C  V  S  G  S :   L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15824" stop="16043"/>
                    <exon start="16623" stop="16723"/>
                    <exon start="17544" stop="17650"/>
                    <exon start="18137" stop="18172"/>
                    <exon start="18254" stop="18339"/>
                    <exon start="18666" stop="18733"/>
                    <exon start="18814" stop="18819"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPHTPHPSLSLHNTFLMAGMDIDGNVEEAARRVQVRFVTKLKAPFKAPPTSIAIPSNLTRLGLSSIVNNLLKAGNDDWNPEPFDFLIDGELVRMSLEEFLLAKGISAEKILEIEYIRAVAPRKEEEPSLHDDWVSAVDGSNSMFVVTGCYDGFGRIWMAAGSCTHLLEGHTDAITSVCVVKPRVAQNGADQIVATASKDRTLRLWKFD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="23224" PGL_stop="32680"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23224" e_stop="23324"/>
            <exon e_start="26530" e_stop="26808"/>
            <exon e_start="26895" e_stop="26971"/>
            <exon e_start="27912" e_stop="27988"/>
            <exon e_start="29051" e_stop="29141"/>
            <exon e_start="29706" e_stop="29796"/>
            <exon e_start="30089" e_stop="30162"/>
            <exon e_start="30367" e_stop="30477"/>
            <exon e_start="31384" e_stop="31455"/>
            <exon e_start="31631" e_stop="31651"/>
            <exon e_start="31774" e_stop="31841"/>
            <exon e_start="32315" e_stop="32680"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.416" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.880" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.734" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23224" e_stop="23324" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.975">
            <gDNA_intron_boundary i_start="23325" i_stop="26529" i_length="3205"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26530" e_stop="26808" e_length="279"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="26809" i_stop="26894" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26895" e_stop="26971" e_length="77"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.964">
            <gDNA_intron_boundary i_start="26972" i_stop="27911" i_length="940"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27912" e_stop="27988" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.416" acc_prob="0.957">
            <gDNA_intron_boundary i_start="27989" i_stop="29050" i_length="1062"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="29051" e_stop="29141" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.880" acc_prob="0.995">
            <gDNA_intron_boundary i_start="29142" i_stop="29705" i_length="564"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="29706" e_stop="29796" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.881" acc_prob="0.995">
            <gDNA_intron_boundary i_start="29797" i_stop="30088" i_length="292"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="30089" e_stop="30162" e_length="74"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.926">
            <gDNA_intron_boundary i_start="30163" i_stop="30366" i_length="204"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="30367" e_stop="30477" e_length="111"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.959">
            <gDNA_intron_boundary i_start="30478" i_stop="31383" i_length="906"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="31384" e_stop="31455" e_length="72"/>
          </exon>
          <intron i_serial="9" don_prob="0.976" acc_prob="0.987">
            <gDNA_intron_boundary i_start="31456" i_stop="31630" i_length="175"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="31631" e_stop="31651" e_length="21"/>
          </exon>
          <intron i_serial="10" don_prob="0.906" acc_prob="0.990">
            <gDNA_intron_boundary i_start="31652" i_stop="31773" i_length="122"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="31774" e_stop="31841" e_length="68"/>
          </exon>
          <intron i_serial="11" don_prob="0.734" acc_prob="0.979">
            <gDNA_intron_boundary i_start="31842" i_stop="32314" i_length="473"/>
          </intron>
          <exon e_serial="12" e_score="0.997">
            <gDNA_exon_boundary e_start="32315" e_stop="32680" e_length="366"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23224" stop="23324"/>
              <exon start="26530" stop="26808"/>
              <exon start="26895" stop="26971"/>
              <exon start="27912" stop="27988"/>
              <exon start="29051" stop="29141"/>
              <exon start="29706" stop="29796"/>
              <exon start="30089" stop="30162"/>
              <exon start="30367" stop="30422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27957" stop="27988"/>
              <exon start="29051" stop="29141"/>
              <exon start="29706" stop="29796"/>
              <exon start="30089" stop="30162"/>
              <exon start="30367" stop="30477"/>
              <exon start="31384" stop="31455"/>
              <exon start="31631" stop="31651"/>
              <exon start="31774" stop="31841"/>
              <exon start="32315" stop="32401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27957" stop="27988"/>
              <exon start="29051" stop="29141"/>
              <exon start="29706" stop="29796"/>
              <exon start="30089" stop="30162"/>
              <exon start="30367" stop="30477"/>
              <exon start="31384" stop="31455"/>
              <exon start="31631" stop="31651"/>
              <exon start="31774" stop="31823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27957" stop="27988"/>
              <exon start="29051" stop="29141"/>
              <exon start="29706" stop="29796"/>
              <exon start="30089" stop="30162"/>
              <exon start="30367" stop="30477"/>
              <exon start="31384" stop="31440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27958" stop="27988"/>
              <exon start="29051" stop="29141"/>
              <exon start="29706" stop="29796"/>
              <exon start="30089" stop="30162"/>
              <exon start="30367" stop="30477"/>
              <exon start="31384" stop="31455"/>
              <exon start="31631" stop="31651"/>
              <exon start="31774" stop="31826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31443" stop="31455"/>
              <exon start="31631" stop="31651"/>
              <exon start="31774" stop="31841"/>
              <exon start="32315" stop="32680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31631" stop="31651"/>
              <exon start="31774" stop="31841"/>
              <exon start="32315" stop="32680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31781" stop="31841"/>
              <exon start="32315" stop="32680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAGCACACGAACAATCATCAGATAGTACAATTTGATACGCGACGACTCCCACAACTTTTATTATATATATGGAGACGCGAAAGAGACTATTCTAATAG : GCGCAAGCTGTTGACATGTTGGACGTCACCAGTAGGTCAATACAACACCCTTTCGTCTGCGCAGGAAGGCCCGCCTCATTTCTTTTTGCATAGACGGCAAAAAGAAAAGCGTTGGGAACAAGGGGGAAAGGAAGCCAACGGTTGATAGAGCCATGAAAAAGATGGCAGCTTTGCCATCGGCAGACTGGGAATGGGAAAATGCCACCGCCGGTGCTGCTGCAGGCCTTGCCACTGTCACATTCTCTCATCCCCTTGATGTTGTTCGCACCCGGTTCCAGG : TTTACGATGGAAGAATCTCCAATGTCCCGGCCTATCGGAACACTCCTCACGCTTTGTTTGCCATTGCTCGAAGTGAG : GGTCTTAGAGGACTTTATGCTGGCTTTTACCCTGCTGTTCTTGGGTCAACTATTTCATGGGGTTTATATTTTTTCTT : TTATAGCAAGGCTAAGCAAAGGTATCTAAGAAACAGGGAGGAGCTGAGTCCTGGCCTTCACCTTGCTTCAGCTGCAGAAGCAGGAGCGCTG : GTCTGTCTTTGCACCAACCCCATTTGGCTTGTGAAAACAAGATTGCAACTTCAGACTCCTAATCAGATTCGTCCATACACCGGATTTCATG : ATGCTTTAAGAACGATAATCAAAGAAGAAGGATGGAGGGCACTGTACAAGGGGCTTATGCCAAGCCTATTTCTG : ATTACACATGGTGCTATTCAGTTCACGGCATATGAGGAATTCCGCAAAGTCATTCTTAGCTCGAAAGCTCAGGAGAATGAAAACCCTCTTGCCACAGCTGCTGACTTGTTG : GATTCAGTTGACTATGCAACACTAGGAGCTTCTTCTAAGTTGGCAGCCACTCTTACAACATACCCATTTCAG : GTTGTCCGATCTCGATTGCAG : CAACGACCAAGTACGACTGGAGTTCCAAGATACATGGATAGCTGGCATGTTGTGAAGGAAACTGCAAG : GTTTGAGGGTTTACGCGGCTTTTACAGAGGTATCACAGCAAACGTGTTGAAAAATGCCCCTGCCGCTTCAATTACCTTCATTGTCTATGAGAATGTCCTAAACCTGCTAAAATTGTCTAGGAAAGAGTATTAGTTCTTTTACATCCTTTTTGCCTCCCATTTCTTGTTGTAGCAATTAGGATTCTACACCATTGAAACTATTTTTGGAAGAAGTATACTCTCAGATTTGACAGGAGTACAAAAATAGAAACAAGATATCATTAAAGAGAATGTGAACAGGAGACAATATAATGGCTGGTGTGGTGTAATTGTACTATATTTCTCGTCTTTGTAATTTATGAGAAAAGAATAATCTTTTTAGACTTT</gDNA_template>
            <first_frame> E  K  H  T  N  N  H  Q  I  V  Q  F  D  T  R  R  L  P  Q  L  L  L  Y  I  W  R  R  E  R  D  Y  S  N  R :   R  K  L  L  T  C  W  T  S  P  V  G  Q  Y  N  T  L  S  S  A  Q  E  G  P  P  H  F  F  L  H  R  R  Q  K  E  K  R  W  E  Q  G  G  K  E  A  N  G  *  *  S  H  E  K  D  G  S  F  A  I  G  R  L  G  M  G  K  C  H  R  R  C  C  C  R  P  C  H  C  H  I  L  S  S  P  *  C  C  S  H  P  V  P  G :   L  R  W  K  N  L  Q  C  P  G  L  S  E  H  S  S  R  F  V  C  H  C  S  K  *   : G  S  *  R  T  L  C  W  L  L  P  C  C  S  W  V  N  Y  F  M  G  F  I  F  F  L  :  L  *  Q  G  *  A  K  V  S  K  K  Q  G  G  A  E  S  W  P  S  P  C  F  S  C  R  S  R  S  A   : G  L  S  L  H  Q  P  H  L  A  C  E  N  K  I  A  T  S  D  S  *  S  D  S  S  I  H  R  I  S  * :   C  F  K  N  D  N  Q  R  R  R  M  E  G  T  V  Q  G  A  Y  A  K  P  I  S   : D  Y  T  W  C  Y  S  V  H  G  I  *  G  I  P  Q  S  H  S  *  L  E  S  S  G  E  *  K  P  S  C  H  S  C  *  L  V   : G  F  S  *  L  C  N  T  R  S  F  F  *  V  G  S  H  S  Y  N  I  P  I  S   : G  C  P  I  S  I  A   : A  T  T  K  Y  D  W  S  S  K  I  H  G  *  L  A  C  C  E  G  N  C  K  :  V  *  G  F  T  R  L  L  Q  R  Y  H  S  K  R  V  E  K  C  P  C  R  F  N  Y  L  H  C  L  *  E  C  P  K  P  A  K  I  V  *  E  R  V  L  V  L  L  H  P  F  C  L  P  F  L  V  V  A  I  R  I  L  H  H  *  N  Y  F  W  K  K  Y  T  L  R  F  D  R  S  T  K  I  E  T  R  Y  H  *  R  E  C  E  Q  E  T  I  *  W  L  V  W  C  N  C  T  I  F  L  V  F  V  I  Y  E  K  R  I  I  F  L  D  F </first_frame>
            <second_frame>  K  S  T  R  T  I  I  R  *  Y  N  L  I  R  D  D  S  H  N  F  Y  Y  I  Y  G  D  A  K  E  T  I  L  I   : G  A  S  C  *  H  V  G  R  H  Q  *  V  N  T  T  P  F  R  L  R  R  K  A  R  L  I  S  F  C  I  D  G  K  K  K  S  V  G  N  K  G  E  R  K  P  T  V  D  R  A  M  K  K  M  A  A  L  P  S  A  D  W  E  W  E  N  A  T  A  G  A  A  A  G  L  A  T  V  T  F  S  H  P  L  D  V  V  R  T  R  F  Q   : V  Y  D  G  R  I  S  N  V  P  A  Y  R  N  T  P  H  A  L  F  A  I  A  R  S  E  :  G  L  R  G  L  Y  A  G  F  Y  P  A  V  L  G  S  T  I  S  W  G  L  Y  F  F  F :   Y  S  K  A  K  Q  R  Y  L  R  N  R  E  E  L  S  P  G  L  H  L  A  S  A  A  E  A  G  A  L  :  V  C  L  C  T  N  P  I  W  L  V  K  T  R  L  Q  L  Q  T  P  N  Q  I  R  P  Y  T  G  F  H   : D  A  L  R  T  I  I  K  E  E  G  W  R  A  L  Y  K  G  L  M  P  S  L  F  L  :  I  T  H  G  A  I  Q  F  T  A  Y  E  E  F  R  K  V  I  L  S  S  K  A  Q  E  N  E  N  P  L  A  T  A  A  D  L  L  :  D  S  V  D  Y  A  T  L  G  A  S  S  K  L  A  A  T  L  T  T  Y  P  F  Q  :  V  V  R  S  R  L  Q  :  Q  R  P  S  T  T  G  V  P  R  Y  M  D  S  W  H  V  V  K  E  T  A  R :   F  E  G  L  R  G  F  Y  R  G  I  T  A  N  V  L  K  N  A  P  A  A  S  I  T  F  I  V  Y  E  N  V  L  N  L  L  K  L  S  R  K  E  Y  *  F  F  Y  I  L  F  A  S  H  F  L  L  *  Q  L  G  F  Y  T  I  E  T  I  F  G  R  S  I  L  S  D  L  T  G  V  Q  K  *  K  Q  D  I  I  K  E  N  V  N  R  R  Q  Y  N  G  W  C  G  V  I  V  L  Y  F  S  S  L  *  F  M  R  K  E  *  S  F  *  T   </second_frame>
            <third_frame>   K  A  H  E  Q  S  S  D  S  T  I  *  Y  A  T  T  P  T  T  F  I  I  Y  M  E  T  R  K  R  L  F  *  *  :  A  Q  A  V  D  M  L  D  V  T  S  R  S  I  Q  H  P  F  V  C  A  G  R  P  A  S  F  L  F  A  *  T  A  K  R  K  A  L  G  T  R  G  K  G  S  Q  R  L  I  E  P  *  K  R  W  Q  L  C  H  R  Q  T  G  N  G  K  M  P  P  P  V  L  L  Q  A  L  P  L  S  H  S  L  I  P  L  M  L  F  A  P  G  S  R  :  F  T  M  E  E  S  P  M  S  R  P  I  G  T  L  L  T  L  C  L  P  L  L  E  V  R :   V  L  E  D  F  M  L  A  F  T  L  L  F  L  G  Q  L  F  H  G  V  Y  I  F  S   : F  I  A  R  L  S  K  G  I  *  E  T  G  R  S  *  V  L  A  F  T  L  L  Q  L  Q  K  Q  E  R  W :   S  V  F  A  P  T  P  F  G  L  *  K  Q  D  C  N  F  R  L  L  I  R  F  V  H  T  P  D  F  M  :  M  L  *  E  R  *  S  K  K  K  D  G  G  H  C  T  R  G  L  C  Q  A  Y  F  * :   L  H  M  V  L  F  S  S  R  H  M  R  N  S  A  K  S  F  L  A  R  K  L  R  R  M  K  T  L  L  P  Q  L  L  T  C  W :   I  Q  L  T  M  Q  H  *  E  L  L  L  S  W  Q  P  L  L  Q  H  T  H  F  R :   L  S  D  L  D  C  S :   N  D  Q  V  R  L  E  F  Q  D  T  W  I  A  G  M  L  *  R  K  L  Q   : G  L  R  V  Y  A  A  F  T  E  V  S  Q  Q  T  C  *  K  M  P  L  P  L  Q  L  P  S  L  S  M  R  M  S  *  T  C  *  N  C  L  G  K  S  I  S  S  F  T  S  F  L  P  P  I  S  C  C  S  N  *  D  S  T  P  L  K  L  F  L  E  E  V  Y  S  Q  I  *  Q  E  Y  K  N  R  N  K  I  S  L  K  R  M  *  T  G  D  N  I  M  A  G  V  V  *  L  Y  Y  I  S  R  L  C  N  L  *  E  K  N  N  L  F  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26565" stop="26808"/>
                    <exon start="26895" stop="26971"/>
                    <exon start="27912" stop="27988"/>
                    <exon start="29051" stop="29141"/>
                    <exon start="29706" stop="29796"/>
                    <exon start="30089" stop="30162"/>
                    <exon start="30367" stop="30477"/>
                    <exon start="31384" stop="31455"/>
                    <exon start="31631" stop="31651"/>
                    <exon start="31774" stop="31841"/>
                    <exon start="32315" stop="32447"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNTTPFRLRRKARLISFCIDGKKKSVGNKGERKPTVDRAMKKMAALPSADWEWENATAGAAAGLATVTFSHPLDVVRTRFQVYDGRISNVPAYRNTPHALFAIARSEGLRGLYAGFYPAVLGSTISWGLYFFFYSKAKQRYLRNREELSPGLHLASAAEAGALVCLCTNPIWLVKTRLQLQTPNQIRPYTGFHDALRTIIKEEGWRALYKGLMPSLFLITHGAIQFTAYEEFRKVILSSKAQENENPLATAADLLDSVDYATLGASSKLAATLTTYPFQVVRSRLQQRPSTTGVPRYMDSWHVVKETARFEGLRGFYRGITANVLKNAPAASITFIVYENVLNLLKLSRKEY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="33905" PGL_stop="37174"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33905" e_stop="34697"/>
            <exon e_start="36321" e_stop="36733"/>
            <exon e_start="37151" e_stop="37174"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.931" acc_prob="0.985" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="33905" e_stop="34697" e_length="793"/>
          </exon>
          <intron i_serial="1" don_prob="0.931" acc_prob="0.985">
            <gDNA_intron_boundary i_start="34698" i_stop="36320" i_length="1623"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36321" e_stop="36733" e_length="413"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="36734" i_stop="37150" i_length="417"/>
          </intron>
          <exon e_serial="3" e_score="0.625">
            <gDNA_exon_boundary e_start="37151" e_stop="37174" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33905" stop="34573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33906" stop="34413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33922" stop="34342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33924" stop="34643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33931" stop="34275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33990" stop="34604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34004" stop="34411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34044" stop="34573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34054" stop="34575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34123" stop="34668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34123" stop="34576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34164" stop="34697"/>
              <exon start="36321" stop="36394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34350" stop="34695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34540" stop="34697"/>
              <exon start="36321" stop="36733"/>
              <exon start="37151" stop="37174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34596" stop="34697"/>
              <exon start="36321" stop="36664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201627" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCAATTCCATAACCTAAGGGGCCAAAGTGTATGCTAGTAGGCCTAAAACCTCACTTCCCCAACCTTGGTACTTCTCCCAGACGGCTTAAACCCGCCGCCGTAATCACTATCTCCGGCGCCGTTACAAAGTCCAAGCAGAAGTTCTTATGCTATAAGATTCTGTAATCATGAGGTGCTTTAATCGATTTATCAATCAATTGCTGTCTCGCCGTTCAAGAACTATTTCCACATATCAAACACCTTATGTGCATTCACGAATTCCACAGTCCAAGATTCAAAATTTATCCAAAACCCATTTCTACAGCTTCACTAAATCGTTAATTAGTTCAAATTTCACAACATCAGCTCAGGAGTCTAAGCCGGCCCCATCCGAGAGAGTATCTGCGATAGTCGATGAGATTTCGGGTCTAACGTTGCTGGAAGTATCGGATTTGGGGGAGGTTCTAAGGAAGAAAATGGGTATTGAAGAGATGCCTGTAATGGCAATGATGATGCCTGGAATGGGATTTAGTGCTGGAGGGATGAAGGGAAAGGGTGCAGGAGCTGCGGGAAAGACGGAGGAGAAGGCGGAGAAGACTGTGTTTGATCTGAAGCTTGAAGGGGGATTTGATGCCGGGGCAAAGATTAAGATTATCAAGGAAGTGAGATCTTTTACTGATCTGGGACTCAAGGAGGCTAAGGATTTGGTGGAAAAGGCTCCAGCTAGTTTGAAGAAAGGGGTTACGAAAGAGGAGGCTGAGAAAATTATTGAGAAGATGAAAGCGGTTGGAGCCAAAGTCACTATGGAGTGAG : ATCCCTTGATTGTATTTTTGCAACAAAGATCGGGAGCTAACAGGTCATGACTTTGAAAACACAATCTGCATTTGGTGATGCATCATGTTTGGAGGTTCGTGGTTACTCAAGGGCTAGCTTTTCTGTTTTGAAAATAAAGGAGACGGTGACTCTCCTAGGACATTGTAGAGCTATTTGGTTGAGAACTGACATCTTATAATGAATTCACGTTGTTATAGGTATGATAGATAGTGAGCTGAAAAAAACTGTGGTATATTTGCAACCATGGATTAGTTTCCAATTCAGTTTAGATCAGTTTGTACTCTTTTTAATTATTTAGGCTACAGTTGGTTTGAGATTATCCTGACAAGGTTGACACACATAGTGAACAAAGCTGGACTTGTCCGGTTCTAATTCACATTTCAAGCTAACAA : AAAAGCAAAAAAACAATTTCTTTC</gDNA_template>
            <first_frame> S  N  S  I  T  *  G  A  K  V  Y  A  S  R  P  K  T  S  L  P  Q  P  W  Y  F  S  Q  T  A  *  T  R  R  R  N  H  Y  L  R  R  R  Y  K  V  Q  A  E  V  L  M  L  *  D  S  V  I  M  R  C  F  N  R  F  I  N  Q  L  L  S  R  R  S  R  T  I  S  T  Y  Q  T  P  Y  V  H  S  R  I  P  Q  S  K  I  Q  N  L  S  K  T  H  F  Y  S  F  T  K  S  L  I  S  S  N  F  T  T  S  A  Q  E  S  K  P  A  P  S  E  R  V  S  A  I  V  D  E  I  S  G  L  T  L  L  E  V  S  D  L  G  E  V  L  R  K  K  M  G  I  E  E  M  P  V  M  A  M  M  M  P  G  M  G  F  S  A  G  G  M  K  G  K  G  A  G  A  A  G  K  T  E  E  K  A  E  K  T  V  F  D  L  K  L  E  G  G  F  D  A  G  A  K  I  K  I  I  K  E  V  R  S  F  T  D  L  G  L  K  E  A  K  D  L  V  E  K  A  P  A  S  L  K  K  G  V  T  K  E  E  A  E  K  I  I  E  K  M  K  A  V  G  A  K  V  T  M  E  *   : D  P  L  I  V  F  L  Q  Q  R  S  G  A  N  R  S  *  L  *  K  H  N  L  H  L  V  M  H  H  V  W  R  F  V  V  T  Q  G  L  A  F  L  F  *  K  *  R  R  R  *  L  S  *  D  I  V  E  L  F  G  *  E  L  T  S  Y  N  E  F  T  L  L  *  V  *  *  I  V  S  *  K  K  L  W  Y  I  C  N  H  G  L  V  S  N  S  V  *  I  S  L  Y  S  F  *  L  F  R  L  Q  L  V  *  D  Y  P  D  K  V  D  T  H  S  E  Q  S  W  T  C  P  V  L  I  H  I  S  S  *  Q  :  K  S  K  K  T  I  S  F </first_frame>
            <second_frame>  A  I  P  *  P  K  G  P  K  C  M  L  V  G  L  K  P  H  F  P  N  L  G  T  S  P  R  R  L  K  P  A  A  V  I  T  I  S  G  A  V  T  K  S  K  Q  K  F  L  C  Y  K  I  L  *  S  *  G  A  L  I  D  L  S  I  N  C  C  L  A  V  Q  E  L  F  P  H  I  K  H  L  M  C  I  H  E  F  H  S  P  R  F  K  I  Y  P  K  P  I  S  T  A  S  L  N  R  *  L  V  Q  I  S  Q  H  Q  L  R  S  L  S  R  P  H  P  R  E  Y  L  R  *  S  M  R  F  R  V  *  R  C  W  K  Y  R  I  W  G  R  F  *  G  R  K  W  V  L  K  R  C  L  *  W  Q  *  *  C  L  E  W  D  L  V  L  E  G  *  R  E  R  V  Q  E  L  R  E  R  R  R  R  R  R  R  R  L  C  L  I  *  S  L  K  G  D  L  M  P  G  Q  R  L  R  L  S  R  K  *  D  L  L  L  I  W  D  S  R  R  L  R  I  W  W  K  R  L  Q  L  V  *  R  K  G  L  R  K  R  R  L  R  K  L  L  R  R  *  K  R  L  E  P  K  S  L  W  S  E  :  I  P  *  L  Y  F  C  N  K  D  R  E  L  T  G  H  D  F  E  N  T  I  C  I  W  *  C  I  M  F  G  G  S  W  L  L  K  G  *  L  F  C  F  E  N  K  G  D  G  D  S  P  R  T  L  *  S  Y  L  V  E  N  *  H  L  I  M  N  S  R  C  Y  R  Y  D  R  *  *  A  E  K  N  C  G  I  F  A  T  M  D  *  F  P  I  Q  F  R  S  V  C  T  L  F  N  Y  L  G  Y  S  W  F  E  I  I  L  T  R  L  T  H  I  V  N  K  A  G  L  V  R  F  *  F  T  F  Q  A  N  K :   K  A  K  K  Q  F  L   </second_frame>
            <third_frame>   Q  F  H  N  L  R  G  Q  S  V  C  *  *  A  *  N  L  T  S  P  T  L  V  L  L  P  D  G  L  N  P  P  P  *  S  L  S  P  A  P  L  Q  S  P  S  R  S  S  Y  A  I  R  F  C  N  H  E  V  L  *  S  I  Y  Q  S  I  A  V  S  P  F  K  N  Y  F  H  I  S  N  T  L  C  A  F  T  N  S  T  V  Q  D  S  K  F  I  Q  N  P  F  L  Q  L  H  *  I  V  N  *  F  K  F  H  N  I  S  S  G  V  *  A  G  P  I  R  E  S  I  C  D  S  R  *  D  F  G  S  N  V  A  G  S  I  G  F  G  G  G  S  K  E  E  N  G  Y  *  R  D  A  C  N  G  N  D  D  A  W  N  G  I  *  C  W  R  D  E  G  K  G  C  R  S  C  G  K  D  G  G  E  G  G  E  D  C  V  *  S  E  A  *  R  G  I  *  C  R  G  K  D  *  D  Y  Q  G  S  E  I  F  Y  *  S  G  T  Q  G  G  *  G  F  G  G  K  G  S  S  *  F  E  E  R  G  Y  E  R  G  G  *  E  N  Y  *  E  D  E  S  G  W  S  Q  S  H  Y  G  V  R :   S  L  D  C  I  F  A  T  K  I  G  S  *  Q  V  M  T  L  K  T  Q  S  A  F  G  D  A  S  C  L  E  V  R  G  Y  S  R  A  S  F  S  V  L  K  I  K  E  T  V  T  L  L  G  H  C  R  A  I  W  L  R  T  D  I  L  *  *  I  H  V  V  I  G  M  I  D  S  E  L  K  K  T  V  V  Y  L  Q  P  W  I  S  F  Q  F  S  L  D  Q  F  V  L  F  L  I  I  *  A  T  V  G  L  R  L  S  *  Q  G  *  H  T  *  *  T  K  L  D  L  S  G  S  N  S  H  F  K  L  T   : K  K  Q  K  N  N  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34061" stop="34696"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSVIMRCFNRFINQLLSRRSRTISTYQTPYVHSRIPQSKIQNLSKTHFYSFTKSLISSNFTTSAQESKPAPSERVSAIVDEISGLTLLEVSDLGEVLRKKMGIEEMPVMAMMMPGMGFSAGGMKGKGAGAAGKTEEKAEKTVFDLKLEGGFDAGAKIKIIKEVRSFTDLGLKEAKDLVEKAPASLKKGVTKEEAEKIIEKMKAVGAKVTME*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="43281" PGL_stop="43107"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43281" e_stop="43107"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="43281" e_stop="43107" e_length="175"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43281" stop="43107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336107" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCACCGGAAACTCAAATTCTTCTTCTCTAAGAAAGCAATTCCGATGGGTTCTCGTTCAAAATTAAGCCCCAGTAGCTTATCGATGAGAAGAACAAGAAGATCTACCCCTCACAAAAAAACATGCAAATCTCAAAATCTTGTTGACGTTGACGGCGGTTCCGTTTCTGAAAAAT</gDNA_template>
            <first_frame> F  H  R  K  L  K  F  F  F  S  K  K  A  I  P  M  G  S  R  S  K  L  S  P  S  S  L  S  M  R  R  T  R  R  S  T  P  H  K  K  T  C  K  S  Q  N  L  V  D  V  D  G  G  S  V  S  E  K  </first_frame>
            <second_frame>  S  T  G  N  S  N  S  S  S  L  R  K  Q  F  R  W  V  L  V  Q  N  *  A  P  V  A  Y  R  *  E  E  Q  E  D  L  P  L  T  K  K  H  A  N  L  K  I  L  L  T  L  T  A  V  P  F  L  K  N </second_frame>
            <third_frame>   P  P  E  T  Q  I  L  L  L  *  E  S  N  S  D  G  F  S  F  K  I  K  P  Q  *  L  I  D  E  K  N  K  K  I  Y  P  S  Q  K  N  M  Q  I  S  K  S  C  *  R  *  R  R  F  R  F  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0025E22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="51122" PGL_stop="53159"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51122" e_stop="51206"/>
            <exon e_start="52344" e_stop="53159"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.894" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51122" e_stop="51206" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.894">
            <gDNA_intron_boundary i_start="51207" i_stop="52343" i_length="1137"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="52344" e_stop="53159" e_length="816"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51122" stop="51206"/>
              <exon start="52344" stop="53159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51163" stop="51206"/>
              <exon start="52344" stop="52588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52424" stop="52765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTTTGCTAATCATTTTCTCTTCTGATTCCGGCGACGATTACCGGGGAATGTTTCCCGATGACGGTCTGGTTTCTTTAAAGAG : ATAAGTCCATGCTTCCGAGTAATTGGCTAGGTGAAGAATTATCCTTTCTCTGAAGTGCAGTATGATTGCATCAACTGCAAGGCATGAGAGCTGATTGCTTTGATCTACCAAAATCTTTATAAAGAGCTGAAAAGCTGATATATTCCAGCTGGTTTCCTTGTTGTGCACAAGATGGCGTGTGAAGAAATTCTGAAGGCTGTATTCCCATTTCTGGAGGGCATTGAACTGGCTACATGTATGATAGTGTGCAAACAGTGGCGAGATATTGCACGAGATGATTACTTCTGGAAATGTCTTTGTTCTAAAAAATGGCCATCTATTTGCAAACGGTCATCACCTCCCACTGTAACATACTATAATCTATTTCAGAACTTCCATAAACGTCCATACCGCCGGACTGTTCTCCCTCCTAAACTTTCCTTCAGTGACTTAGAGTTCTACATTGACATATGGACTGAAGAGAAGATAATATTTTCAGATGTGGTCCCAGGGCCTGTTCTTCAGAAGGGAATCTGGATCCCACCTCCCGGAATCTGTGATGTGCTTAGGTTCCACTTGGAAGGGCCTGAATACAAGATGACTCTACCTGTGGAACCAAGATTTACAATTCCTTTGTGCCAGACAGTCAGCGTCTCTGTGCTTGTTGGGCGCAAAGATACAAATAAAGTTGCATGCATTATCAAGAAGTCCCTTTTTGATTATATAGATCGAACAGCATATCGGGCTTTAGCTTATGACTATCTTGACTTCTCCTCTCCCATGTGCTTGTTTGTATCGGGTGTTCGGGCTTGGATATCTTTGCTGTTCATGGACCAT</gDNA_template>
            <first_frame> *  F  C  *  S  F  S  L  L  I  P  A  T  I  T  G  E  C  F  P  M  T  V  W  F  L  *  R   : D  K  S  M  L  P  S  N  W  L  G  E  E  L  S  F  L  *  S  A  V  *  L  H  Q  L  Q  G  M  R  A  D  C  F  D  L  P  K  S  L  *  R  A  E  K  L  I  Y  S  S  W  F  P  C  C  A  Q  D  G  V  *  R  N  S  E  G  C  I  P  I  S  G  G  H  *  T  G  Y  M  Y  D  S  V  Q  T  V  A  R  Y  C  T  R  *  L  L  L  E  M  S  L  F  *  K  M  A  I  Y  L  Q  T  V  I  T  S  H  C  N  I  L  *  S  I  S  E  L  P  *  T  S  I  P  P  D  C  S  P  S  *  T  F  L  Q  *  L  R  V  L  H  *  H  M  D  *  R  E  D  N  I  F  R  C  G  P  R  A  C  S  S  E  G  N  L  D  P  T  S  R  N  L  *  C  A  *  V  P  L  G  R  A  *  I  Q  D  D  S  T  C  G  T  K  I  Y  N  S  F  V  P  D  S  Q  R  L  C  A  C  W  A  Q  R  Y  K  *  S  C  M  H  Y  Q  E  V  P  F  *  L  Y  R  S  N  S  I  S  G  F  S  L  *  L  S  *  L  L  L  S  H  V  L  V  C  I  G  C  S  G  L  D  I  F  A  V  H  G  P  </first_frame>
            <second_frame>  N  F  A  N  H  F  L  F  *  F  R  R  R  L  P  G  N  V  S  R  *  R  S  G  F  F  K  E  :  I  S  P  C  F  R  V  I  G  *  V  K  N  Y  P  F  S  E  V  Q  Y  D  C  I  N  C  K  A  *  E  L  I  A  L  I  Y  Q  N  L  Y  K  E  L  K  S  *  Y  I  P  A  G  F  L  V  V  H  K  M  A  C  E  E  I  L  K  A  V  F  P  F  L  E  G  I  E  L  A  T  C  M  I  V  C  K  Q  W  R  D  I  A  R  D  D  Y  F  W  K  C  L  C  S  K  K  W  P  S  I  C  K  R  S  S  P  P  T  V  T  Y  Y  N  L  F  Q  N  F  H  K  R  P  Y  R  R  T  V  L  P  P  K  L  S  F  S  D  L  E  F  Y  I  D  I  W  T  E  E  K  I  I  F  S  D  V  V  P  G  P  V  L  Q  K  G  I  W  I  P  P  P  G  I  C  D  V  L  R  F  H  L  E  G  P  E  Y  K  M  T  L  P  V  E  P  R  F  T  I  P  L  C  Q  T  V  S  V  S  V  L  V  G  R  K  D  T  N  K  V  A  C  I  I  K  K  S  L  F  D  Y  I  D  R  T  A  Y  R  A  L  A  Y  D  Y  L  D  F  S  S  P  M  C  L  F  V  S  G  V  R  A  W  I  S  L  L  F  M  D  H </second_frame>
            <third_frame>   I  L  L  I  I  F  S  S  D  S  G  D  D  Y  R  G  M  F  P  D  D  G  L  V  S  L  K  R :   *  V  H  A  S  E  *  L  A  R  *  R  I  I  L  S  L  K  C  S  M  I  A  S  T  A  R  H  E  S  *  L  L  *  S  T  K  I  F  I  K  S  *  K  A  D  I  F  Q  L  V  S  L  L  C  T  R  W  R  V  K  K  F  *  R  L  Y  S  H  F  W  R  A  L  N  W  L  H  V  *  *  C  A  N  S  G  E  I  L  H  E  M  I  T  S  G  N  V  F  V  L  K  N  G  H  L  F  A  N  G  H  H  L  P  L  *  H  T  I  I  Y  F  R  T  S  I  N  V  H  T  A  G  L  F  S  L  L  N  F  P  S  V  T  *  S  S  T  L  T  Y  G  L  K  R  R  *  Y  F  Q  M  W  S  Q  G  L  F  F  R  R  E  S  G  S  H  L  P  E  S  V  M  C  L  G  S  T  W  K  G  L  N  T  R  *  L  Y  L  W  N  Q  D  L  Q  F  L  C  A  R  Q  S  A  S  L  C  L  L  G  A  K  I  Q  I  K  L  H  A  L  S  R  S  P  F  L  I  I  *  I  E  Q  H  I  G  L  *  L  M  T  I  L  T  S  P  L  P  C  A  C  L  Y  R  V  F  G  L  G  Y  L  C  C  S  W  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52482" stop="53159"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIPAGFLVVHKMACEEILKAVFPFLEGIELATCMIVCKQWRDIARDDYFWKCLCSKKWPSICKRSSPPTVTYYNLFQNFHKRPYRRTVLPPKLSFSDLEFYIDIWTEEKIIFSDVVPGPVLQKGIWIPPPGICDVLRFHLEGPEYKMTLPVEPRFTIPLCQTVSVSVLVGRKDTNKVACIIKKSLFDYIDRTAYRALAYDYLDFSSPMCLFVSGVRAWISLLFMDH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="67590" PGL_stop="54022"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55223" e_stop="54877"/>
            <exon e_start="54685" e_stop="54022"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.968" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="55223" e_stop="54877" e_length="347"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.968">
            <gDNA_intron_boundary i_start="54876" i_stop="54686" i_length="191"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54685" e_stop="54022" e_length="664"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55223" stop="54877"/>
              <exon start="54685" stop="54263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54914" stop="54877"/>
              <exon start="54685" stop="54037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54896" stop="54877"/>
              <exon start="54685" stop="54043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54896" stop="54877"/>
              <exon start="54685" stop="54075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54637" stop="54029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54604" stop="54029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54559" stop="54022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266235" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCTATTCTCCAATGTCTTTCATTTATAGCTCATGTGGTCTGAAGCTGATATGCAGAACAAGGGAGGATTTTTAGCTTCATTAATTTCTAAAGTATGTTCTGCAGAGTGCAGATAAGCATCGAAAGTGTTATCTTTGTTAGTACTATAATATTTTGCGCGCTTTATTTAACAAAGTCTTCTCTGGAAATAGCAGCAGGTTGAAAAGCTGGGATTGAAACAGTTTGATAGCAAGTCAAGGGTAGAAGATGTTGCCTTGAGGGTACCAGAACCAGACAGCTTCTCTACAAGAGTTCGTTTGCCACATCTAGATTCATATGCCTCCCGAGTACCCTTGCCCATGGCTAG : GGCTGATGTTTACACATCTCGCTATTCAGCGTATTTAGATCCCTATCAATCTGGTCGGGTGACAACAGAGAGGATGGAGGAAGCAAGTTCCCATTTGCAGGGGACTTCACTTACGTATGGTCAGGTGACAACGAGGATGGAGGAAGCAGGTTCTATTCACAAGAAAAGGATGGAGGAAGCAAATCCCACTTTGCAGTCGTTCCTCTCTGGCGGGGTGACTAAAAGGAGGATGGAGGAACCAAGTCCTTTGCAGGCAACATCCCTTCCATCTGGTCGAGTATCAAGGATGGATGAAGCAGGTCCCACTTTTCAGGCATCTTGGAGTCCTTCAGCTGCTGCTGACAGAGTTGGACTTCATTCACGCATTACCCCAACTTCTGATCATCAACAGACTCGACCACGGATCAGGTTTGATCCCTTCACTGGTGAGCCATACAAATTTGACCCCTTCACTGGCGAGCCAATTGTCCCTGAGAGCTCAAGTCATCATCGAAGCCTGTACTGAACATTTTCTTAGCCCACCTATGGCTAATAGCCAAACTCATGTAACATAATGTTACTTGTTTGTTCTCCCACAATTGTAAAATAGTACTAGCTGTTAGAAGAGGATTATTTTGTGATCTTTCTCATTATTTGAAATTTTGGCATTATAATCTGATCTGCA</gDNA_template>
            <first_frame> L  L  F  S  N  V  F  H  L  *  L  M  W  S  E  A  D  M  Q  N  K  G  G  F  L  A  S  L  I  S  K  V  C  S  A  E  C  R  *  A  S  K  V  L  S  L  L  V  L  *  Y  F  A  R  F  I  *  Q  S  L  L  W  K  *  Q  Q  V  E  K  L  G  L  K  Q  F  D  S  K  S  R  V  E  D  V  A  L  R  V  P  E  P  D  S  F  S  T  R  V  R  L  P  H  L  D  S  Y  A  S  R  V  P  L  P  M  A  R :   A  D  V  Y  T  S  R  Y  S  A  Y  L  D  P  Y  Q  S  G  R  V  T  T  E  R  M  E  E  A  S  S  H  L  Q  G  T  S  L  T  Y  G  Q  V  T  T  R  M  E  E  A  G  S  I  H  K  K  R  M  E  E  A  N  P  T  L  Q  S  F  L  S  G  G  V  T  K  R  R  M  E  E  P  S  P  L  Q  A  T  S  L  P  S  G  R  V  S  R  M  D  E  A  G  P  T  F  Q  A  S  W  S  P  S  A  A  A  D  R  V  G  L  H  S  R  I  T  P  T  S  D  H  Q  Q  T  R  P  R  I  R  F  D  P  F  T  G  E  P  Y  K  F  D  P  F  T  G  E  P  I  V  P  E  S  S  S  H  H  R  S  L  Y  *  T  F  S  *  P  T  Y  G  *  *  P  N  S  C  N  I  M  L  L  V  C  S  P  T  I  V  K  *  Y  *  L  L  E  E  D  Y  F  V  I  F  L  I  I  *  N  F  G  I  I  I  *  S  A </first_frame>
            <second_frame>  F  Y  S  P  M  S  F  I  Y  S  S  C  G  L  K  L  I  C  R  T  R  E  D  F  *  L  H  *  F  L  K  Y  V  L  Q  S  A  D  K  H  R  K  C  Y  L  C  *  Y  Y  N  I  L  R  A  L  F  N  K  V  F  S  G  N  S  S  R  L  K  S  W  D  *  N  S  L  I  A  S  Q  G  *  K  M  L  P  *  G  Y  Q  N  Q  T  A  S  L  Q  E  F  V  C  H  I  *  I  H  M  P  P  E  Y  P  C  P  W  L   : G  L  M  F  T  H  L  A  I  Q  R  I  *  I  P  I  N  L  V  G  *  Q  Q  R  G  W  R  K  Q  V  P  I  C  R  G  L  H  L  R  M  V  R  *  Q  R  G  W  R  K  Q  V  L  F  T  R  K  G  W  R  K  Q  I  P  L  C  S  R  S  S  L  A  G  *  L  K  G  G  W  R  N  Q  V  L  C  R  Q  H  P  F  H  L  V  E  Y  Q  G  W  M  K  Q  V  P  L  F  R  H  L  G  V  L  Q  L  L  L  T  E  L  D  F  I  H  A  L  P  Q  L  L  I  I  N  R  L  D  H  G  S  G  L  I  P  S  L  V  S  H  T  N  L  T  P  S  L  A  S  Q  L  S  L  R  A  Q  V  I  I  E  A  C  T  E  H  F  L  S  P  P  M  A  N  S  Q  T  H  V  T  *  C  Y  L  F  V  L  P  Q  L  *  N  S  T  S  C  *  K  R  I  I  L  *  S  F  S  L  F  E  I  L  A  L  *  S  D  L   </second_frame>
            <third_frame>   S  I  L  Q  C  L  S  F  I  A  H  V  V  *  S  *  Y  A  E  Q  G  R  I  F  S  F  I  N  F  *  S  M  F  C  R  V  Q  I  S  I  E  S  V  I  F  V  S  T  I  I  F  C  A  L  Y  L  T  K  S  S  L  E  I  A  A  G  *  K  A  G  I  E  T  V  *  *  Q  V  K  G  R  R  C  C  L  E  G  T  R  T  R  Q  L  L  Y  K  S  S  F  A  T  S  R  F  I  C  L  P  S  T  L  A  H  G  *  :  G  *  C  L  H  I  S  L  F  S  V  F  R  S  L  S  I  W  S  G  D  N  R  E  D  G  G  S  K  F  P  F  A  G  D  F  T  Y  V  W  S  G  D  N  E  D  G  G  S  R  F  Y  S  Q  E  K  D  G  G  S  K  S  H  F  A  V  V  P  L  W  R  G  D  *  K  E  D  G  G  T  K  S  F  A  G  N  I  P  S  I  W  S  S  I  K  D  G  *  S  R  S  H  F  S  G  I  L  E  S  F  S  C  C  *  Q  S  W  T  S  F  T  H  Y  P  N  F  *  S  S  T  D  S  T  T  D  Q  V  *  S  L  H  W  *  A  I  Q  I  *  P  L  H  W  R  A  N  C  P  *  E  L  K  S  S  S  K  P  V  L  N  I  F  L  A  H  L  W  L  I  A  K  L  M  *  H  N  V  T  C  L  F  S  H  N  C  K  I  V  L  A  V  R  R  G  L  F  C  D  L  S  H  Y  L  K  F  W  H  Y  N  L  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55031" stop="54877"/>
                    <exon start="54685" stop="54181"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQVEKLGLKQFDSKSRVEDVALRVPEPDSFSTRVRLPHLDSYASRVPLPMARADVYTSRYSAYLDPYQSGRVTTERMEEASSHLQGTSLTYGQVTTRMEEAGSIHKKRMEEANPTLQSFLSGGVTKRRMEEPSPLQATSLPSGRVSRMDEAGPTFQASWSPSAAADRVGLHSRITPTSDHQQTRPRIRFDPFTGEPYKFDPFTGEPIVPESSSHHRSLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="67590" e_stop="67456"/>
            <exon e_start="67089" e_stop="67016"/>
            <exon e_start="65510" e_stop="65445"/>
            <exon e_start="65303" e_stop="65232"/>
            <exon e_start="63879" e_stop="63807"/>
            <exon e_start="63377" e_stop="63340"/>
            <exon e_start="63257" e_stop="63150"/>
            <exon e_start="60506" e_stop="60387"/>
            <exon e_start="60294" e_stop="60214"/>
            <exon e_start="60097" e_stop="60029"/>
            <exon e_start="57985" e_stop="57908"/>
            <exon e_start="57804" e_stop="57640"/>
            <exon e_start="56654" e_stop="56547"/>
            <exon e_start="55370" e_stop="55302"/>
            <exon e_start="55193" e_stop="55131"/>
            <exon e_start="55028" e_stop="55012"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.809" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.525" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.573" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.957" e_score="0.986"/>
          <exon-intron don_prob="0.138" acc_prob="0.777" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67590" e_stop="67456" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.937">
            <gDNA_intron_boundary i_start="67455" i_stop="67090" i_length="366"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67089" e_stop="67016" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67015" i_stop="65511" i_length="1505"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65510" e_stop="65445" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.966">
            <gDNA_intron_boundary i_start="65444" i_stop="65304" i_length="141"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65303" e_stop="65232" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.999">
            <gDNA_intron_boundary i_start="65231" i_stop="63880" i_length="1352"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63879" e_stop="63807" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="63806" i_stop="63378" i_length="429"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="63377" e_stop="63340" e_length="38"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="63339" i_stop="63258" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="63257" e_stop="63150" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.809">
            <gDNA_intron_boundary i_start="63149" i_stop="60507" i_length="2643"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="60506" e_stop="60387" e_length="120"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.995">
            <gDNA_intron_boundary i_start="60386" i_stop="60295" i_length="92"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="60294" e_stop="60214" e_length="81"/>
          </exon>
          <intron i_serial="9" don_prob="0.976" acc_prob="0.525">
            <gDNA_intron_boundary i_start="60213" i_stop="60098" i_length="116"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="60097" e_stop="60029" e_length="69"/>
          </exon>
          <intron i_serial="10" don_prob="0.895" acc_prob="0.573">
            <gDNA_intron_boundary i_start="60028" i_stop="57986" i_length="2043"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="57985" e_stop="57908" e_length="78"/>
          </exon>
          <intron i_serial="11" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57907" i_stop="57805" i_length="103"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="57804" e_stop="57640" e_length="165"/>
          </exon>
          <intron i_serial="12" don_prob="0.974" acc_prob="0.997">
            <gDNA_intron_boundary i_start="57639" i_stop="56655" i_length="985"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="56654" e_stop="56547" e_length="108"/>
          </exon>
          <intron i_serial="13" don_prob="0.944" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56546" i_stop="55371" i_length="1176"/>
          </intron>
          <exon e_serial="14" e_score="0.986">
            <gDNA_exon_boundary e_start="55370" e_stop="55302" e_length="69"/>
          </exon>
          <intron i_serial="14" don_prob="1.000" acc_prob="0.957">
            <gDNA_intron_boundary i_start="55301" i_stop="55194" i_length="108"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="55193" e_stop="55131" e_length="63"/>
          </exon>
          <intron i_serial="15" don_prob="0.138" acc_prob="0.777">
            <gDNA_intron_boundary i_start="55130" i_stop="55029" i_length="102"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="55028" e_stop="55012" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67590" stop="67456"/>
              <exon start="67089" stop="67016"/>
              <exon start="65510" stop="65445"/>
              <exon start="65303" stop="65232"/>
              <exon start="63879" stop="63807"/>
              <exon start="63377" stop="63340"/>
              <exon start="63257" stop="63150"/>
              <exon start="60506" stop="60390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67590" stop="67456"/>
              <exon start="67089" stop="67016"/>
              <exon start="65510" stop="65445"/>
              <exon start="65303" stop="65232"/>
              <exon start="63879" stop="63807"/>
              <exon start="63377" stop="63340"/>
              <exon start="63257" stop="63199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60488" stop="60387"/>
              <exon start="60294" stop="60214"/>
              <exon start="60097" stop="60029"/>
              <exon start="57985" stop="57908"/>
              <exon start="57804" stop="57640"/>
              <exon start="56654" stop="56547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60488" stop="60387"/>
              <exon start="60294" stop="60214"/>
              <exon start="60097" stop="60029"/>
              <exon start="57985" stop="57908"/>
              <exon start="57804" stop="57640"/>
              <exon start="56654" stop="56556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60487" stop="60387"/>
              <exon start="60294" stop="60214"/>
              <exon start="60097" stop="60029"/>
              <exon start="57985" stop="57908"/>
              <exon start="57804" stop="57640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57911" stop="57908"/>
              <exon start="57804" stop="57640"/>
              <exon start="56654" stop="56547"/>
              <exon start="55370" stop="55302"/>
              <exon start="55193" stop="55131"/>
              <exon start="55028" stop="55012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258684" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACTTCTGCATAGAAAAATAGTACGATGATATGCAGGGAAAACTGAACTCCGAAACGACAACTGATTTGAGGGCTTAGGGTTCCGACCGAATCACTCTCGGATTGAGAATTCATTGGAGACTTCATTTTTTCAG : AACAGGAAATGAAAGGGACAGAGATTTTTGTTGGTGGTTTGGCCCGTACTACTACTGAAAGCAAAATTCACGAG : GTATTTTCTTCATGCGGTGAGATTGTGGAAATAAGGTTGATAAAAGACCAGATAGGCAATGCCAAG : GGGTTCTGCTTTGTACGATTTGCAACAAAATATGCTGCTGACAAAGCTCTGAAGGAAAAATCTGGATATGTG : CTAGATGGGAAGAAAATTGGGATTCGCCCCTCAGTTGAGCAGGACACACTATTTCTTGGAAATCTTAACAAAG : GTTGGGGTGCTGAGGAATTTGAGAGTATTGTGCGCCAG : GTTTTTCCAGATGTTACATCTGTTGATCTTGCAATTCTTGGAGATGTCCAACTTGGTCAGAAGCAACGGAATCGGGGATTTGCCTTTGTGAAATTTTCATCTCATGCT : GCTGCAGCTCGTGCTTTACGGGTAGGCTCCCAATCTGATTTTCTCATCGGTGGCAACTTGCATCCATCTGTACAGTGGGCTGAGGAGGAATCTGAAGTTGATCCTAATGAACTTGCTCAG : ATCAAAGTAGCCTTTGTCAGAAATGTACCTCCTGGTGCTGATGAAGATTACTTGAAGAAGCTCTTTCAGCCCTTTGGCAAT : GTAGAGAAGGTTACTCTCTCCAGGAAGGGTAGTTCCACCATTGGATTTGTTTACTTCGATAAGCGATCT : GATCTTGACAATGCTATTAAAGGATTGAATGAGAAAACTGTACAAGGGCCAAGGGGAGGTCCCTCAAGCAAGATTCAG : GTCGAAGTTGCGAGGCCAACTGATAAGAACAGGAAACGAGGTCGTGAGGATCAAAAAATGTCCAGTAACATTGAGAGTCATTCCAAGCTTTTGAAGGATGATCCAAATGTTGAGATGGTTGGGGGTCCTAAATCAAAAGCTCAACCGGTGATGCATCTATCAGAT : GAAATGGATTATTTGGATCCTTATGAAGCTGCTGTAATTGCACTACCTGTGCTTGTCAAGGAGCGTTTAGTTCGGATCTTGCGGCTTGGTATTGCTACTAGATATGAT : ATAGATGTTGTCAACCTAACCAGTCTTAAGATGTTGCCCGAGTCAGCTGCCATATCTGTTCTTGACCAG : CTCATGTGGTCTGAAGCTGATATGCAGAACAAGGGAGGATTTTTAGCTTCATTAATTTCTAAA : CAGGTTGAAAAGCTGGG</gDNA_template>
            <first_frame> Q  L  L  H  R  K  I  V  R  *  Y  A  G  K  T  E  L  R  N  D  N  *  F  E  G  L  G  F  R  P  N  H  S  R  I  E  N  S  L  E  T  S  F  F  Q  :  N  R  K  *  K  G  Q  R  F  L  L  V  V  W  P  V  L  L  L  K  A  K  F  T  R :   Y  F  L  H  A  V  R  L  W  K  *  G  *  *  K  T  R  *  A  M  P  R :   G  S  A  L  Y  D  L  Q  Q  N  M  L  L  T  K  L  *  R  K  N  L  D  M  C :   *  M  G  R  K  L  G  F  A  P  Q  L  S  R  T  H  Y  F  L  E  I  L  T  K  :  V  G  V  L  R  N  L  R  V  L  C  A  R :   F  F  Q  M  L  H  L  L  I  L  Q  F  L  E  M  S  N  L  V  R  S  N  G  I  G  D  L  P  L  *  N  F  H  L  M  L :   L  Q  L  V  L  Y  G  *  A  P  N  L  I  F  S  S  V  A  T  C  I  H  L  Y  S  G  L  R  R  N  L  K  L  I  L  M  N  L  L  R :   S  K  *  P  L  S  E  M  Y  L  L  V  L  M  K  I  T  *  R  S  S  F  S  P  L  A  M :   *  R  R  L  L  S  P  G  R  V  V  P  P  L  D  L  F  T  S  I  S  D  L :   I  L  T  M  L  L  K  D  *  M  R  K  L  Y  K  G  Q  G  E  V  P  Q  A  R  F  R :   S  K  L  R  G  Q  L  I  R  T  G  N  E  V  V  R  I  K  K  C  P  V  T  L  R  V  I  P  S  F  *  R  M  I  Q  M  L  R  W  L  G  V  L  N  Q  K  L  N  R  *  C  I  Y  Q  M :   K  W  I  I  W  I  L  M  K  L  L  *  L  H  Y  L  C  L  S  R  S  V  *  F  G  S  C  G  L  V  L  L  L  D  M  I :   *  M  L  S  T  *  P  V  L  R  C  C  P  S  Q  L  P  Y  L  F  L  T  S :   S  C  G  L  K  L  I  C  R  T  R  E  D  F  *  L  H  *  F  L  N :   R  L  K  S  W  </first_frame>
            <second_frame>  N  F  C  I  E  K  *  Y  D  D  M  Q  G  K  L  N  S  E  T  T  T  D  L  R  A  *  G  S  D  R  I  T  L  G  L  R  I  H  W  R  L  H  F  F  R :   T  G  N  E  R  D  R  D  F  C  W  W  F  G  P  Y  Y  Y  *  K  Q  N  S  R   : G  I  F  F  M  R  *  D  C  G  N  K  V  D  K  R  P  D  R  Q  C  Q   : G  V  L  L  C  T  I  C  N  K  I  C  C  *  Q  S  S  E  G  K  I  W  I  C   : A  R  W  E  E  N  W  D  S  P  L  S  *  A  G  H  T  I  S  W  K  S  *  Q  R :   L  G  C  *  G  I  *  E  Y  C  A  P   : G  F  S  R  C  Y  I  C  *  S  C  N  S  W  R  C  P  T  W  S  E  A  T  E  S  G  I  C  L  C  E  I  F  I  S  C   : C  C  S  S  C  F  T  G  R  L  P  I  *  F  S  H  R  W  Q  L  A  S  I  C  T  V  G  *  G  G  I  *  S  *  S  *  *  T  C  S   : D  Q  S  S  L  C  Q  K  C  T  S  W  C  *  *  R  L  L  E  E  A  L  S  A  L  W  Q   : C  R  E  G  Y  S  L  Q  E  G  *  F  H  H  W  I  C  L  L  R  *  A  I   : *  S  *  Q  C  Y  *  R  I  E  *  E  N  C  T  R  A  K  G  R  S  L  K  Q  D  S   : G  R  S  C  E  A  N  *  *  E  Q  E  T  R  S  *  G  S  K  N  V  Q  *  H  *  E  S  F  Q  A  F  E  G  *  S  K  C  *  D  G  W  G  S  *  I  K  S  S  T  G  D  A  S  I  R   : *  N  G  L  F  G  S  L  *  S  C  C  N  C  T  T  C  A  C  Q  G  A  F  S  S  D  L  A  A  W  Y  C  Y  *  I  *   : Y  R  C  C  Q  P  N  Q  S  *  D  V  A  R  V  S  C  H  I  C  S  *  P   : A  H  V  V  *  S  *  Y  A  E  Q  G  R  I  F  S  F  I  N  F  *   : T  G  *  K  A  G </second_frame>
            <third_frame>   T  S  A  *  K  N  S  T  M  I  C  R  E  N  *  T  P  K  R  Q  L  I  *  G  L  R  V  P  T  E  S  L  S  D  *  E  F  I  G  D  F  I  F  S   : E  Q  E  M  K  G  T  E  I  F  V  G  G  L  A  R  T  T  T  E  S  K  I  H  E  :  V  F  S  S  C  G  E  I  V  E  I  R  L  I  K  D  Q  I  G  N  A  K  :  G  F  C  F  V  R  F  A  T  K  Y  A  A  D  K  A  L  K  E  K  S  G  Y  V  :  L  D  G  K  K  I  G  I  R  P  S  V  E  Q  D  T  L  F  L  G  N  L  N  K   : G  W  G  A  E  E  F  E  S  I  V  R  Q  :  V  F  P  D  V  T  S  V  D  L  A  I  L  G  D  V  Q  L  G  Q  K  Q  R  N  R  G  F  A  F  V  K  F  S  S  H  A  :  A  A  A  R  A  L  R  V  G  S  Q  S  D  F  L  I  G  G  N  L  H  P  S  V  Q  W  A  E  E  E  S  E  V  D  P  N  E  L  A  Q  :  I  K  V  A  F  V  R  N  V  P  P  G  A  D  E  D  Y  L  K  K  L  F  Q  P  F  G  N  :  V  E  K  V  T  L  S  R  K  G  S  S  T  I  G  F  V  Y  F  D  K  R  S  :  D  L  D  N  A  I  K  G  L  N  E  K  T  V  Q  G  P  R  G  G  P  S  S  K  I  Q  :  V  E  V  A  R  P  T  D  K  N  R  K  R  G  R  E  D  Q  K  M  S  S  N  I  E  S  H  S  K  L  L  K  D  D  P  N  V  E  M  V  G  G  P  K  S  K  A  Q  P  V  M  H  L  S  D  :  E  M  D  Y  L  D  P  Y  E  A  A  V  I  A  L  P  V  L  V  K  E  R  L  V  R  I  L  R  L  G  I  A  T  R  Y  D  :  I  D  V  V  N  L  T  S  L  K  M  L  P  E  S  A  A  I  S  V  L  D  Q  :  L  M  W  S  E  A  D  M  Q  N  K  G  G  F  L  A  S  L  I  S  K  :  Q  V  E  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67483" stop="67456"/>
                    <exon start="67089" stop="67016"/>
                    <exon start="65510" stop="65445"/>
                    <exon start="65303" stop="65232"/>
                    <exon start="63879" stop="63807"/>
                    <exon start="63377" stop="63340"/>
                    <exon start="63257" stop="63150"/>
                    <exon start="60506" stop="60387"/>
                    <exon start="60294" stop="60214"/>
                    <exon start="60097" stop="60029"/>
                    <exon start="57985" stop="57908"/>
                    <exon start="57804" stop="57640"/>
                    <exon start="56654" stop="56547"/>
                    <exon start="55370" stop="55302"/>
                    <exon start="55193" stop="55131"/>
                    <exon start="55028" stop="55014"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1227</number_coding_nucleotides>
                  <number_encoded_amino_acids>409</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFIGDFIFSEQEMKGTEIFVGGLARTTTESKIHEVFSSCGEIVEIRLIKDQIGNAKGFCFVRFATKYAADKALKEKSGYVLDGKKIGIRPSVEQDTLFLGNLNKGWGAEEFESIVRQVFPDVTSVDLAILGDVQLGQKQRNRGFAFVKFSSHAAAARALRVGSQSDFLIGGNLHPSVQWAEEESEVDPNELAQIKVAFVRNVPPGADEDYLKKLFQPFGNVEKVTLSRKGSSTIGFVYFDKRSDLDNAIKGLNEKTVQGPRGGPSSKIQVEVARPTDKNRKRGREDQKMSSNIESHSKLLKDDPNVEMVGGPKSKAQPVMHLSDEMDYLDPYEAAVIALPVLVKERLVRILRLGIATRYDIDVVNLTSLKMLPESAAISVLDQLMWSEADMQNKGGFLASLISKQVEKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="70918" PGL_stop="69419"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70918" e_stop="70495"/>
            <exon e_start="70174" e_stop="69575"/>
            <exon e_start="69469" e_stop="69419"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.775" acc_prob="0.896" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70918" e_stop="70495" e_length="424"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.978">
            <gDNA_intron_boundary i_start="70494" i_stop="70175" i_length="320"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="70174" e_stop="69575" e_length="600"/>
          </exon>
          <intron i_serial="2" don_prob="0.775" acc_prob="0.896">
            <gDNA_intron_boundary i_start="69574" i_stop="69470" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69469" e_stop="69419" e_length="51"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70918" stop="70495"/>
              <exon start="70174" stop="70004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70516" stop="70495"/>
              <exon start="70174" stop="69575"/>
              <exon start="69469" stop="69419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATGTTGTAGAATGCTCACAAAAGCAAGAGGAAGATGAACACATTTTCCGAAGTAGATATCCTCCAGTCCATGTACCAGACAATGTGACTCTCCCAGAATTTGTACTTCATAATGTAGAGTTATACGCTGACAGACTGGCTTTTGTGGATGCTACCACGGGCAAAGGCTACACATATGGCGAAGTTGAAAGAGACATAAGGAGGTTTGCCAAGGCCTTGAGGTCCCTTGGCTTAAGAAAAGGAAGGGTTGTGTTGGTAGTGCTTCCAAATGTACCGGAATATGCTATTGTTGCTCTTGGAATCATGGCTGCTGGTGGTGTCTTTTCAGGTGCAAATCCAGCAGCTCATTCATCCGAAATTATGAAACAAGTTGAATCTGCTGATGGCAAGCTTATTGTCTCTGATCTACCCACCTATCACAAG : GTGAAAGATTGTGGATTGCCAGTAATAATACTAGGCGAAGAACGTGCAGAAGGGACGATTCATTGGGATGAATTGCTCGAAGCTGCAGATCGTGCCAGTTCCAGAACTGATCACATAACAAACCAAGAAGATGAAATTGTGCAACAAAGTGATCTATGTGCACTGCCCTTTTCATCAGGCACGACAGGACTATCCAAGGGAGTGATGTTAACTCACAGAAACCTAGTAGCAAACCTCTGCTCTACACTCTTTAGTATTAGTCCAGAAATGATAGGTCAAGTTACAATACTAGGTCTGATACCATTCTTTCACATTTATGGTATAACTGGAATCTGTTGTGCAACCATTAGGAACAAAGGGAAAGTGGTTGTCATGCGTAGGTACGAACTGAGGGCATTTCTAAATGCACTCATCATACATGAAGTCTCATTTGCACCTATCGTGCCACCTATCATCTTAGCACTTGTTAAGAATCCGATCGTTGATGAATTTGATCTCAAAAAGCTTAAGCTTAGATCCATCATGACAGCAGCTGCTCCACTTGCCCCTGAGATTCTTAATGAATTTGAGAAGAAATTTCCGGATGTTCAGGTCCAAGAG : GCATATGGGATGACTGAGCACAGCTGCATTACTCTTTCCCACAGCAATCAG</gDNA_template>
            <first_frame> S  C  C  R  M  L  T  K  A  R  G  R  *  T  H  F  P  K  *  I  S  S  S  P  C  T  R  Q  C  D  S  P  R  I  C  T  S  *  C  R  V  I  R  *  Q  T  G  F  C  G  C  Y  H  G  Q  R  L  H  I  W  R  S  *  K  R  H  K  E  V  C  Q  G  L  E  V  P  W  L  K  K  R  K  G  C  V  G  S  A  S  K  C  T  G  I  C  Y  C  C  S  W  N  H  G  C  W  W  C  L  F  R  C  K  S  S  S  S  F  I  R  N  Y  E  T  S  *  I  C  *  W  Q  A  Y  C  L  *  S  T  H  L  S  Q   : G  E  R  L  W  I  A  S  N  N  T  R  R  R  T  C  R  R  D  D  S  L  G  *  I  A  R  S  C  R  S  C  Q  F  Q  N  *  S  H  N  K  P  R  R  *  N  C  A  T  K  *  S  M  C  T  A  L  F  I  R  H  D  R  T  I  Q  G  S  D  V  N  S  Q  K  P  S  S  K  P  L  L  Y  T  L  *  Y  *  S  R  N  D  R  S  S  Y  N  T  R  S  D  T  I  L  S  H  L  W  Y  N  W  N  L  L  C  N  H  *  E  Q  R  E  S  G  C  H  A  *  V  R  T  E  G  I  S  K  C  T  H  H  T  *  S  L  I  C  T  Y  R  A  T  Y  H  L  S  T  C  *  E  S  D  R  *  *  I  *  S  Q  K  A  *  A  *  I  H  H  D  S  S  C  S  T  C  P  *  D  S  *  *  I  *  E  E  I  S  G  C  S  G  P  R   : G  I  W  D  D  *  A  Q  L  H  Y  S  F  P  Q  Q  S  </first_frame>
            <second_frame>  H  V  V  E  C  S  Q  K  Q  E  E  D  E  H  I  F  R  S  R  Y  P  P  V  H  V  P  D  N  V  T  L  P  E  F  V  L  H  N  V  E  L  Y  A  D  R  L  A  F  V  D  A  T  T  G  K  G  Y  T  Y  G  E  V  E  R  D  I  R  R  F  A  K  A  L  R  S  L  G  L  R  K  G  R  V  V  L  V  V  L  P  N  V  P  E  Y  A  I  V  A  L  G  I  M  A  A  G  G  V  F  S  G  A  N  P  A  A  H  S  S  E  I  M  K  Q  V  E  S  A  D  G  K  L  I  V  S  D  L  P  T  Y  H  K  :  V  K  D  C  G  L  P  V  I  I  L  G  E  E  R  A  E  G  T  I  H  W  D  E  L  L  E  A  A  D  R  A  S  S  R  T  D  H  I  T  N  Q  E  D  E  I  V  Q  Q  S  D  L  C  A  L  P  F  S  S  G  T  T  G  L  S  K  G  V  M  L  T  H  R  N  L  V  A  N  L  C  S  T  L  F  S  I  S  P  E  M  I  G  Q  V  T  I  L  G  L  I  P  F  F  H  I  Y  G  I  T  G  I  C  C  A  T  I  R  N  K  G  K  V  V  V  M  R  R  Y  E  L  R  A  F  L  N  A  L  I  I  H  E  V  S  F  A  P  I  V  P  P  I  I  L  A  L  V  K  N  P  I  V  D  E  F  D  L  K  K  L  K  L  R  S  I  M  T  A  A  A  P  L  A  P  E  I  L  N  E  F  E  K  K  F  P  D  V  Q  V  Q  E  :  A  Y  G  M  T  E  H  S  C  I  T  L  S  H  S  N  Q </second_frame>
            <third_frame>   M  L  *  N  A  H  K  S  K  R  K  M  N  T  F  S  E  V  D  I  L  Q  S  M  Y  Q  T  M  *  L  S  Q  N  L  Y  F  I  M  *  S  Y  T  L  T  D  W  L  L  W  M  L  P  R  A  K  A  T  H  M  A  K  L  K  E  T  *  G  G  L  P  R  P  *  G  P  L  A  *  E  K  E  G  L  C  W  *  C  F  Q  M  Y  R  N  M  L  L  L  L  L  E  S  W  L  L  V  V  S  F  Q  V  Q  I  Q  Q  L  I  H  P  K  L  *  N  K  L  N  L  L  M  A  S  L  L  S  L  I  Y  P  P  I  T  R :   *  K  I  V  D  C  Q  *  *  Y  *  A  K  N  V  Q  K  G  R  F  I  G  M  N  C  S  K  L  Q  I  V  P  V  P  E  L  I  T  *  Q  T  K  K  M  K  L  C  N  K  V  I  Y  V  H  C  P  F  H  Q  A  R  Q  D  Y  P  R  E  *  C  *  L  T  E  T  *  *  Q  T  S  A  L  H  S  L  V  L  V  Q  K  *  *  V  K  L  Q  Y  *  V  *  Y  H  S  F  T  F  M  V  *  L  E  S  V  V  Q  P  L  G  T  K  G  K  W  L  S  C  V  G  T  N  *  G  H  F  *  M  H  S  S  Y  M  K  S  H  L  H  L  S  C  H  L  S  S  *  H  L  L  R  I  R  S  L  M  N  L  I  S  K  S  L  S  L  D  P  S  *  Q  Q  L  L  H  L  P  L  R  F  L  M  N  L  R  R  N  F  R  M  F  R  S  K  R :   H  M  G  *  L  S  T  A  A  L  L  F  P  T  A  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70917" stop="70495"/>
                    <exon start="70174" stop="69575"/>
                    <exon start="69469" stop="69419"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1074</number_coding_nucleotides>
                  <number_encoded_amino_acids>358</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVVECSQKQEEDEHIFRSRYPPVHVPDNVTLPEFVLHNVELYADRLAFVDATTGKGYTYGEVERDIRRFAKALRSLGLRKGRVVLVVLPNVPEYAIVALGIMAAGGVFSGANPAAHSSEIMKQVESADGKLIVSDLPTYHKVKDCGLPVIILGEERAEGTIHWDELLEAADRASSRTDHITNQEDEIVQQSDLCALPFSSGTTGLSKGVMLTHRNLVANLCSTLFSISPEMIGQVTILGLIPFFHIYGITGICCATIRNKGKVVVMRRYELRAFLNALIIHEVSFAPIVPPIILALVKNPIVDEFDLKKLKLRSIMTAAAPLAPEILNEFEKKFPDVQVQEAYGMTEHSCITLSHSNQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="71055" PGL_stop="71559"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71055" e_stop="71073"/>
            <exon e_start="71416" e_stop="71559"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.527" acc_prob="0.000" e_score="0.579"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.579">
            <gDNA_exon_boundary e_start="71055" e_stop="71073" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.527" acc_prob="0.000">
            <gDNA_intron_boundary i_start="71074" i_stop="71415" i_length="342"/>
          </intron>
          <exon e_serial="2" e_score="0.965">
            <gDNA_exon_boundary e_start="71416" e_stop="71559" e_length="144"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71055" stop="71073"/>
              <exon start="71416" stop="71559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215961" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTTATTTTGGTGATAA : TTTTTGAATGAGGTCCATAGCATTCTTGATTTCATATAAAAAGTACAGGGTAAACCATGTTAATTTGCATGTACGAGTACAATTTTTTTCAAAGAATATGAAAACAAACGTCAACAACCAAATTATTAAATATAGGCCGCTTAT</gDNA_template>
            <first_frame> F  L  I  L  V  I   : I  F  E  *  G  P  *  H  S  *  F  H  I  K  S  T  G  *  T  M  L  I  C  M  Y  E  Y  N  F  F  Q  R  I  *  K  Q  T  S  T  T  K  L  L  N  I  G  R  L  </first_frame>
            <second_frame>  F  L  F  W  *  *  :  F  L  N  E  V  H  S  I  L  D  F  I  *  K  V  Q  G  K  P  C  *  F  A  C  T  S  T  I  F  F  K  E  Y  E  N  K  R  Q  Q  P  N  Y  *  I  *  A  A  Y </second_frame>
            <third_frame>   S  Y  F  G  D  N :   F  *  M  R  S  I  A  F  L  I  S  Y  K  K  Y  R  V  N  H  V  N  L  H  V  R  V  Q  F  F  S  K  N  M  K  T  N  V  N  N  Q  I  I  K  Y  R  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0025E22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="76696" PGL_stop="71475"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76696" e_stop="75927"/>
            <exon e_start="75102" e_stop="74938"/>
            <exon e_start="74812" e_stop="74675"/>
            <exon e_start="74585" e_stop="74434"/>
            <exon e_start="74338" e_stop="74225"/>
            <exon e_start="73338" e_stop="73240"/>
            <exon e_start="73148" e_stop="73083"/>
            <exon e_start="72026" e_stop="71919"/>
            <exon e_start="71801" e_stop="71475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.973" e_score="0.962"/>
          <exon-intron don_prob="0.991" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76696" e_stop="75927" e_length="770"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="75926" i_stop="75103" i_length="824"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75102" e_stop="74938" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.981">
            <gDNA_intron_boundary i_start="74937" i_stop="74813" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74812" e_stop="74675" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.923" acc_prob="0.997">
            <gDNA_intron_boundary i_start="74674" i_stop="74586" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74585" e_stop="74434" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="74433" i_stop="74339" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="0.962">
            <gDNA_exon_boundary e_start="74338" e_stop="74225" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.973">
            <gDNA_intron_boundary i_start="74224" i_stop="73339" i_length="886"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73338" e_stop="73240" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.969">
            <gDNA_intron_boundary i_start="73239" i_stop="73149" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73148" e_stop="73083" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.933">
            <gDNA_intron_boundary i_start="73082" i_stop="72027" i_length="1056"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="72026" e_stop="71919" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71918" i_stop="71802" i_length="117"/>
          </intron>
          <exon e_serial="9" e_score="0.936">
            <gDNA_exon_boundary e_start="71801" e_stop="71475" e_length="327"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76696" stop="75995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76696" stop="76004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76668" stop="75927"/>
              <exon start="75102" stop="74938"/>
              <exon start="74812" stop="74675"/>
              <exon start="74585" stop="74434"/>
              <exon start="74338" stop="74225"/>
              <exon start="73338" stop="73240"/>
              <exon start="73148" stop="73083"/>
              <exon start="72026" stop="71919"/>
              <exon start="71801" stop="71632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76655" stop="76033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76651" stop="75943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76649" stop="75927"/>
              <exon start="75102" stop="75009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76647" stop="76049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76646" stop="75927"/>
              <exon start="75102" stop="74941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76644" stop="76278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76637" stop="76253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76632" stop="76051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76632" stop="76078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76625" stop="75927"/>
              <exon start="75102" stop="74938"/>
              <exon start="74812" stop="74792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76625" stop="75927"/>
              <exon start="75102" stop="75020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76603" stop="75927"/>
              <exon start="75102" stop="74943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76577" stop="75927"/>
              <exon start="75102" stop="75011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76572" stop="75980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76530" stop="76079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76454" stop="75966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76446" stop="76051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76409" stop="75934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76396" stop="75927"/>
              <exon start="75102" stop="74938"/>
              <exon start="74812" stop="74782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76241" stop="75927"/>
              <exon start="75102" stop="74938"/>
              <exon start="74812" stop="74675"/>
              <exon start="74585" stop="74565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76233" stop="75927"/>
              <exon start="75102" stop="74938"/>
              <exon start="74812" stop="74792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76095" stop="75927"/>
              <exon start="75102" stop="74938"/>
              <exon start="74812" stop="74675"/>
              <exon start="74585" stop="74434"/>
              <exon start="74338" stop="74225"/>
              <exon start="73338" stop="73272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76043" stop="75927"/>
              <exon start="75102" stop="74938"/>
              <exon start="74812" stop="74675"/>
              <exon start="74585" stop="74455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76035" stop="75927"/>
              <exon start="75102" stop="74938"/>
              <exon start="74812" stop="74762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75971" stop="75927"/>
              <exon start="75102" stop="74938"/>
              <exon start="74812" stop="74675"/>
              <exon start="74585" stop="74434"/>
              <exon start="74338" stop="74280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75037" stop="74938"/>
              <exon start="74812" stop="74675"/>
              <exon start="74585" stop="74434"/>
              <exon start="74338" stop="74225"/>
              <exon start="73338" stop="73246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75020" stop="74938"/>
              <exon start="74812" stop="74675"/>
              <exon start="74585" stop="74434"/>
              <exon start="74338" stop="74235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75020" stop="74938"/>
              <exon start="74812" stop="74675"/>
              <exon start="74585" stop="74434"/>
              <exon start="74338" stop="74257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75020" stop="74938"/>
              <exon start="74812" stop="74675"/>
              <exon start="74585" stop="74434"/>
              <exon start="74338" stop="74276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74987" stop="74938"/>
              <exon start="74812" stop="74675"/>
              <exon start="74585" stop="74434"/>
              <exon start="74338" stop="74225"/>
              <exon start="73338" stop="73240"/>
              <exon start="73148" stop="73083"/>
              <exon start="72026" stop="71919"/>
              <exon start="71801" stop="71698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74779" stop="74675"/>
              <exon start="74585" stop="74434"/>
              <exon start="74338" stop="74225"/>
              <exon start="73338" stop="73240"/>
              <exon start="73148" stop="73083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74531" stop="74434"/>
              <exon start="74338" stop="74225"/>
              <exon start="73338" stop="73240"/>
              <exon start="73148" stop="73083"/>
              <exon start="72026" stop="71919"/>
              <exon start="71801" stop="71542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74531" stop="74434"/>
              <exon start="74338" stop="74225"/>
              <exon start="73338" stop="73240"/>
              <exon start="73148" stop="73083"/>
              <exon start="72026" stop="71919"/>
              <exon start="71801" stop="71588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74520" stop="74434"/>
              <exon start="74338" stop="74225"/>
              <exon start="73338" stop="73240"/>
              <exon start="73148" stop="73083"/>
              <exon start="72026" stop="71919"/>
              <exon start="71801" stop="71475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74491" stop="74434"/>
              <exon start="74338" stop="74225"/>
              <exon start="73338" stop="73240"/>
              <exon start="73148" stop="73083"/>
              <exon start="72026" stop="71919"/>
              <exon start="71801" stop="71622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74491" stop="74434"/>
              <exon start="74338" stop="74225"/>
              <exon start="73338" stop="73240"/>
              <exon start="73148" stop="73083"/>
              <exon start="72026" stop="71919"/>
              <exon start="71801" stop="71755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74314" stop="74225"/>
              <exon start="73338" stop="73240"/>
              <exon start="73148" stop="73083"/>
              <exon start="72026" stop="71919"/>
              <exon start="71801" stop="71527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553430" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74267" stop="74225"/>
              <exon start="73338" stop="73240"/>
              <exon start="73148" stop="73083"/>
              <exon start="72026" stop="71919"/>
              <exon start="71801" stop="71515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74267" stop="74225"/>
              <exon start="73338" stop="73240"/>
              <exon start="73148" stop="73083"/>
              <exon start="72026" stop="71919"/>
              <exon start="71801" stop="71515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72009" stop="71919"/>
              <exon start="71801" stop="71601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72008" stop="71919"/>
              <exon start="71801" stop="71601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72008" stop="71919"/>
              <exon start="71801" stop="71601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGACCAGAGCGTGCTTCTTGATTTTCTTGAGCTTCGTTCCCATTTCCCTCTTTCTCTGTATAGGAACCACAACAAACCCTAGCCTAATTTACAAGCCATAGCCATGACGATCCGGCAGCTCTTAACCCTAGCCCGCCGGTCCCGAAACCTATCCTCATCCCATTCACTGCGGCGTCTTTCTTCGGCGTCTGCCGCCGTCGCCGCCACATCCTCCTCCGCCCCGGCCATCGGTCCGCCACCCCCAGATGCAATGATCTACGATCGATTGGCTGAAGACGTTAAACGAAAGATCAAGAGACTCGAGAATCCTGATTCCCGATTCCTTCAGTACAACTCGCCACACCCAACTTTAGCCGACCACACATCAATCCTCAGCTTCCCCTCTACGCGCGTGACTACACTACCATCGGGCCTGCGTGTGGCCACGGAGACTAATCTCGCTGTCAAGACTGCCACCGTTGGGGTATTCATTGATGCAGGGTCAAGGTTTGAGACCGATGAGACTAATGGAACAGCTCATTTTCTTGAGCATATGATCTTTAAGGGTACTGAAAAGAGGACTTCTTGGGAAATGGAGGAGGAGATTGAGAATATGGGTGGACATTTGAATGCATATACTTCCAGGGAGCAAACAGCATACTATGCTAAAGTGTTGGATAATGACGTCCCTGTAGCTTTGGATATTTTGGCTGATATACTTCAGAATTCTAAGTTCGAAGAGAAAAAGATTGAACGTGAACGTGATGTCATCCTCAGGGAGATGGAGGAG : GTCGAAGGTCAAACAGAGGAAGTCATCTTTGACCACTTGCATTCAACTGCATTCCAGTACTCACCTTTGGGTAGGACTATTCTTGGACCTGCCCAGAATATAAAGACAATCACCAGAAGTCATCTGAAGGACTACATATCAACACATTATACCGCTCCCAGAATG : GTAATTGTTGCTTCTGGGCCTGTTAAACATGAAGAATTTGTTGAGCAAGTTAAGAAACAGTTTACTAAACTTTCAACCAATCCGAGTACGGCCTCAGAATTGGTTGCCAGAGAACCAGCAATTTTTACAGGTTCAGAG : GTTAGGGTAATTGATGATGACATTCCATTGGCACAATTTGCTGTTGCTTTTCAAGGGGCACCGTGGACTGATCCAGATGCCATTCCACTGATGGTAATGCAATCCATGCTGGGCACTTGGAATAAAAATGCCGGAGGAGGGAAACACATGGG : CTCCGATCTGGCACAAAGTGTTGGCATTAATGAACTTGCTGAGAGCCATGATGTCTTTTTAACACCAACTATAAGGATACTGGTTTGTTCCGGCGTGGTATGCTGTTGCAAAAG : CCTGATTGTTTGAGTGATTTGTCCTACTGCATTATGCGCGAGATAAGCAAATTGTGCTACCGGGTTTCGGATGCTGATGTGACTCGTGCTTGCAACCAG : TTGAAGTCTTCTCTCATGCTACACATTGATGGAACTAGTCCTGTTGCTGAAGACATTGGGCGTCAG : CTACTCACATATGGCAGAAGGATTCCAGCTACAGAGCTGTTTGCAAGGGTTGATGCTGTGGATGCTAGCACCATCAAACGAGTTGCAAACAGATTTATCTTTGACCAG : GATGTTGCTATATCCGCGCTGGGGCCTATCCAGACACTACCTGATTATAACTGGTTCAGACGCAGAACCTACATGCTCCGTTATTAGACGATTCTTTTTTTTCTTTTTTTGGAGTTGTAATGCATCACAATTACACACCTCGCTCGACCATTCCAAACTTGGACATATAGGTCTTACTTTTCCAATTCTTCCTCTTGCCTACTTTCTGGTTTTGTAACGGTTTTGTAGCTTTTCCCTATAAAATAAGCGGCCTATATTTAATAATTTGGTTGTTGACGTTTGTTTTCATATTCTTTGAAAAAAATTGTACTCGTACATGCAAATTAA</gDNA_template>
            <first_frame> S  T  R  A  C  F  L  I  F  L  S  F  V  P  I  S  L  F  L  C  I  G  T  T  T  N  P  S  L  I  Y  K  P  *  P  *  R  S  G  S  S  *  P  *  P  A  G  P  E  T  Y  P  H  P  I  H  C  G  V  F  L  R  R  L  P  P  S  P  P  H  P  P  P  P  R  P  S  V  R  H  P  Q  M  Q  *  S  T  I  D  W  L  K  T  L  N  E  R  S  R  D  S  R  I  L  I  P  D  S  F  S  T  T  R  H  T  Q  L  *  P  T  T  H  Q  S  S  A  S  P  L  R  A  *  L  H  Y  H  R  A  C  V  W  P  R  R  L  I  S  L  S  R  L  P  P  L  G  Y  S  L  M  Q  G  Q  G  L  R  P  M  R  L  M  E  Q  L  I  F  L  S  I  *  S  L  R  V  L  K  R  G  L  L  G  K  W  R  R  R  L  R  I  W  V  D  I  *  M  H  I  L  P  G  S  K  Q  H  T  M  L  K  C  W  I  M  T  S  L  *  L  W  I  F  W  L  I  Y  F  R  I  L  S  S  K  R  K  R  L  N  V  N  V  M  S  S  S  G  R  W  R  R :   S  K  V  K  Q  R  K  S  S  L  T  T  C  I  Q  L  H  S  S  T  H  L  W  V  G  L  F  L  D  L  P  R  I  *  R  Q  S  P  E  V  I  *  R  T  T  Y  Q  H  I  I  P  L  P  E  W :   *  L  L  L  L  G  L  L  N  M  K  N  L  L  S  K  L  R  N  S  L  L  N  F  Q  P  I  R  V  R  P  Q  N  W  L  P  E  N  Q  Q  F  L  Q  V  Q  R :   L  G  *  L  M  M  T  F  H  W  H  N  L  L  L  L  F  K  G  H  R  G  L  I  Q  M  P  F  H  *  W  *  C  N  P  C  W  A  L  G  I  K  M  P  E  E  G  N  T  W   : A  P  I  W  H  K  V  L  A  L  M  N  L  L  R  A  M  M  S  F  *  H  Q  L  *  G  Y  W  F  V  P  A  W  Y  A  V  A  K   : A  *  L  F  E  *  F  V  L  L  H  Y  A  R  D  K  Q  I  V  L  P  G  F  G  C  *  C  D  S  C  L  Q  P   : V  E  V  F  S  H  A  T  H  *  W  N  *  S  C  C  *  R  H  W  A  S   : A  T  H  I  W  Q  K  D  S  S  Y  R  A  V  C  K  G  *  C  C  G  C  *  H  H  Q  T  S  C  K  Q  I  Y  L  *  P   : G  C  C  Y  I  R  A  G  A  Y  P  D  T  T  *  L  *  L  V  Q  T  Q  N  L  H  A  P  L  L  D  D  S  F  F  S  F  F  G  V  V  M  H  H  N  Y  T  P  R  S  T  I  P  N  L  D  I  *  V  L  L  F  Q  F  F  L  L  P  T  F  W  F  C  N  G  F  V  A  F  P  Y  K  I  S  G  L  Y  L  I  I  W  L  L  T  F  V  F  I  F  F  E  K  N  C  T  R  T  C  K  L  </first_frame>
            <second_frame>  R  P  E  R  A  S  *  F  S  *  A  S  F  P  F  P  S  F  S  V  *  E  P  Q  Q  T  L  A  *  F  T  S  H  S  H  D  D  P  A  A  L  N  P  S  P  P  V  P  K  P  I  L  I  P  F  T  A  A  S  F  F  G  V  C  R  R  R  R  H  I  L  L  R  P  G  H  R  S  A  T  P  R  C  N  D  L  R  S  I  G  *  R  R  *  T  K  D  Q  E  T  R  E  S  *  F  P  I  P  S  V  Q  L  A  T  P  N  F  S  R  P  H  I  N  P  Q  L  P  L  Y  A  R  D  Y  T  T  I  G  P  A  C  G  H  G  D  *  S  R  C  Q  D  C  H  R  W  G  I  H  *  C  R  V  K  V  *  D  R  *  D  *  W  N  S  S  F  S  *  A  Y  D  L  *  G  Y  *  K  E  D  F  L  G  N  G  G  G  D  *  E  Y  G  W  T  F  E  C  I  Y  F  Q  G  A  N  S  I  L  C  *  S  V  G  *  *  R  P  C  S  F  G  Y  F  G  *  Y  T  S  E  F  *  V  R  R  E  K  D  *  T  *  T  *  C  H  P  Q  G  D  G  G   : G  R  R  S  N  R  G  S  H  L  *  P  L  A  F  N  C  I  P  V  L  T  F  G  *  D  Y  S  W  T  C  P  E  Y  K  D  N  H  Q  K  S  S  E  G  L  H  I  N  T  L  Y  R  S  Q  N   : G  N  C  C  F  W  A  C  *  T  *  R  I  C  *  A  S  *  E  T  V  Y  *  T  F  N  Q  S  E  Y  G  L  R  I  G  C  Q  R  T  S  N  F  Y  R  F  R   : G  *  G  N  *  *  *  H  S  I  G  T  I  C  C  C  F  S  R  G  T  V  D  *  S  R  C  H  S  T  D  G  N  A  I  H  A  G  H  L  E  *  K  C  R  R  R  E  T  H  G  :  L  R  S  G  T  K  C  W  H  *  *  T  C  *  E  P  *  C  L  F  N  T  N  Y  K  D  T  G  L  F  R  R  G  M  L  L  Q  K  :  P  D  C  L  S  D  L  S  Y  C  I  M  R  E  I  S  K  L  C  Y  R  V  S  D  A  D  V  T  R  A  C  N  Q  :  L  K  S  S  L  M  L  H  I  D  G  T  S  P  V  A  E  D  I  G  R  Q  :  L  L  T  Y  G  R  R  I  P  A  T  E  L  F  A  R  V  D  A  V  D  A  S  T  I  K  R  V  A  N  R  F  I  F  D  Q  :  D  V  A  I  S  A  L  G  P  I  Q  T  L  P  D  Y  N  W  F  R  R  R  T  Y  M  L  R  Y  *  T  I  L  F  F  L  F  L  E  L  *  C  I  T  I  T  H  L  A  R  P  F  Q  T  W  T  Y  R  S  Y  F  S  N  S  S  S  C  L  L  S  G  F  V  T  V  L  *  L  F  P  I  K  *  A  A  Y  I  *  *  F  G  C  *  R  L  F  S  Y  S  L  K  K  I  V  L  V  H  A  N  * </second_frame>
            <third_frame>   D  Q  S  V  L  L  D  F  L  E  L  R  S  H  F  P  L  S  L  Y  R  N  H  N  K  P  *  P  N  L  Q  A  I  A  M  T  I  R  Q  L  L  T  L  A  R  R  S  R  N  L  S  S  S  H  S  L  R  R  L  S  S  A  S  A  A  V  A  A  T  S  S  S  A  P  A  I  G  P  P  P  P  D  A  M  I  Y  D  R  L  A  E  D  V  K  R  K  I  K  R  L  E  N  P  D  S  R  F  L  Q  Y  N  S  P  H  P  T  L  A  D  H  T  S  I  L  S  F  P  S  T  R  V  T  T  L  P  S  G  L  R  V  A  T  E  T  N  L  A  V  K  T  A  T  V  G  V  F  I  D  A  G  S  R  F  E  T  D  E  T  N  G  T  A  H  F  L  E  H  M  I  F  K  G  T  E  K  R  T  S  W  E  M  E  E  E  I  E  N  M  G  G  H  L  N  A  Y  T  S  R  E  Q  T  A  Y  Y  A  K  V  L  D  N  D  V  P  V  A  L  D  I  L  A  D  I  L  Q  N  S  K  F  E  E  K  K  I  E  R  E  R  D  V  I  L  R  E  M  E  E  :  V  E  G  Q  T  E  E  V  I  F  D  H  L  H  S  T  A  F  Q  Y  S  P  L  G  R  T  I  L  G  P  A  Q  N  I  K  T  I  T  R  S  H  L  K  D  Y  I  S  T  H  Y  T  A  P  R  M  :  V  I  V  A  S  G  P  V  K  H  E  E  F  V  E  Q  V  K  K  Q  F  T  K  L  S  T  N  P  S  T  A  S  E  L  V  A  R  E  P  A  I  F  T  G  S  E  :  V  R  V  I  D  D  D  I  P  L  A  Q  F  A  V  A  F  Q  G  A  P  W  T  D  P  D  A  I  P  L  M  V  M  Q  S  M  L  G  T  W  N  K  N  A  G  G  G  K  H  M  G :   S  D  L  A  Q  S  V  G  I  N  E  L  A  E  S  H  D  V  F  L  T  P  T  I  R  I  L  V  C  S  G  V  V  C  C  C  K  S :   L  I  V  *  V  I  C  P  T  A  L  C  A  R  *  A  N  C  A  T  G  F  R  M  L  M  *  L  V  L  A  T  S :   *  S  L  L  S  C  Y  T  L  M  E  L  V  L  L  L  K  T  L  G  V  S :   Y  S  H  M  A  E  G  F  Q  L  Q  S  C  L  Q  G  L  M  L  W  M  L  A  P  S  N  E  L  Q  T  D  L  S  L  T  R :   M  L  L  Y  P  R  W  G  L  S  R  H  Y  L  I  I  T  G  S  D  A  E  P  T  C  S  V  I  R  R  F  F  F  F  F  F  W  S  C  N  A  S  Q  L  H  T  S  L  D  H  S  K  L  G  H  I  G  L  T  F  P  I  L  P  L  A  Y  F  L  V  L  *  R  F  C  S  F  S  L  *  N  K  R  P  I  F  N  N  L  V  V  D  V  C  F  H  I  L  *  K  K  L  Y  S  Y  M  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76613" stop="75927"/>
                    <exon start="75102" stop="74938"/>
                    <exon start="74812" stop="74675"/>
                    <exon start="74585" stop="74434"/>
                    <exon start="74338" stop="74225"/>
                    <exon start="73338" stop="73326"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1266</number_coding_nucleotides>
                  <number_encoded_amino_acids>422</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNLQAIAMTIRQLLTLARRSRNLSSSHSLRRLSSASAAVAATSSSAPAIGPPPPDAMIYDRLAEDVKRKIKRLENPDSRFLQYNSPHPTLADHTSILSFPSTRVTTLPSGLRVATETNLAVKTATVGVFIDAGSRFETDETNGTAHFLEHMIFKGTEKRTSWEMEEEIENMGGHLNAYTSREQTAYYAKVLDNDVPVALDILADILQNSKFEEKKIERERDVILREMEEVEGQTEEVIFDHLHSTAFQYSPLGRTILGPAQNIKTITRSHLKDYISTHYTAPRMVIVASGPVKHEEFVEQVKKQFTKLSTNPSTASELVAREPAIFTGSEVRVIDDDIPLAQFAVAFQGAPWTDPDAIPLMVMQSMLGTWNKNAGGGKHMGSDLAQSVGINELAESHDVFLTPTIRILVCSGVVCCCKSLIV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73144" stop="73083"/>
                    <exon start="72026" stop="71919"/>
                    <exon start="71801" stop="71585"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLSCYTLMELVLLLKTLGVSYSHMAEGFQLQSCLQGLMLWMLAPSNELQTDLSLTRMLLYPRWGLSRHYLIITGSDAEPTCSVIRRFFFFFFWSCNASQLHTSLDHSKLGHIGLTFPILPLAYFLVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="84534" PGL_stop="89059"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84534" e_stop="84581"/>
            <exon e_start="85699" e_stop="87449"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.970" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84534" e_stop="84581" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.970">
            <gDNA_intron_boundary i_start="84582" i_stop="85698" i_length="1117"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85699" e_stop="87449" e_length="1751"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84534" stop="84581"/>
              <exon start="85699" stop="86316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84535" stop="84581"/>
              <exon start="85699" stop="86354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84552" stop="84581"/>
              <exon start="85699" stop="86199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85699" stop="86246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85699" stop="85869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85815" stop="86340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86020" stop="86877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86095" stop="86486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86106" stop="86943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86128" stop="86979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86156" stop="86432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86299" stop="86812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86325" stop="86747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86420" stop="86814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86424" stop="86808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86530" stop="87372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86771" stop="87390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86797" stop="87438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87006" stop="87449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87019" stop="87430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87036" stop="87412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229240" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATCCATCTTTTTCCTCTTTCATTTTCTCCTCAAATTCGTCTCTAAG : AGTTAAAAAAGAAGAAAGAAAAATGGTGAAGATTTGCTGCATAGGAGCTGGATATGTTGGTGGCCCCACCATGGCAGTCATTGCACTCAAATGCCCCAAGATTGAAGTGGTCGTTGTTGATATCTCTGTACCTCGCATTACTGCCTGGAACAGTGACACACTTCCCATCTATGAGCCAGGCCTTGACGATGTGGTCAAGCAATGCCGAGGCAAGAATCTCTTCTTCAGCACAGATGTGGAGAAACATGTGCACGAGGCTGATATAGTTTTTGTTTCTGTCAACACTCCTACCAAGACTAGGGGTCTTGGAGCAGGCAAGGCTGCAGATCTTACCTACTGGGAGAGTGCAGCCCGTATGATTGCCGATGTCTCGAAATCTGACAAAATAGTTGTTGAGAAATCAACTGTTCCAGTAAAAACTGCTGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGATTGGAGGCCGGGAAACTCCAGGAGGCCAGAAGGCTATCCAAGCATTGAAGGATGTTTATGCTCATTGGGTCCCTGAAGCCAATATCATTACCACCAACTTGTGGTCCGCTGAGCTCTCAAAGTTGGCTGCCAATGCATTTTTGGCACAAAGAATCTCTTCTGTGAATGCCATGTCAGCTCTCTGTGAGGCTACAGGAGCAAACGTTTCACAGGTGGCATATGCTGTTGGTAAGGACTCGAGAATTGGTCCCAAGTTCCTCAACGCAAGTGTTGGTTTTGGTGGATCTTGCTTCCAGAAGGATATTCTGAACCTGGTTTACATTTGCGAGTGCAATGGTCTGCCTGAGGTTGCTGAATACTGGAAACAAGTTATCAAGATTAATGACTATCAGAAGAGTCGTTTTGTCAATCGTGTTGTTGCCTCTATGTTCAACACAGTGTCAAACAAGAAAGTTGCAATTCTAGGTTTTGCTTTCAAGAAGGACACTGGCGATACTCGAGAGACCCCTGCAATTGATGTATGCAAGGGACTAGTGGGGGATAATGCTAAATTGAGCATATACGATCCTCAGGTGCAGGAGGACCAAATCCAGAGGGACCTCTCCATGAAGAAGTTTGACTGGGATCATCCCCTTCACCTCCAACCAATGAGTCCCACATCCGTGAAACAACAAGTCAGTGTTACTATGGATGCCTACGGTGCAACAAAAGATGCCCATGCTGTCTGCATTCTCACAGAGTGGGATGAGTTCAAGACCCTTGATTTCCAGAAGATATATGATAACATGCAAAAACCCGCTTTTGTTTTTGATGGCAGGAATGTTGTGAATGCTGAAAAGCTAAGAGAGATTGGGTTTATCGTCTACTCAATTGGTAAGCCTCTCGATGCCTGGCTTAAGGACATGCCTGCTGTCGCTTAAGAGCCTTACATTGCTCGAGTGACTTGTTTTGGTCTTAAAGATATTAGTTATCAGACAATCATCAGCTGGGATTCTTTACTATTTTTTTTACCACTTCAATTTCTGTTTCCATTTTATCCATTGTAGTCATAAGACCACCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTCTGTTTCTTTTGTATTGATGATACTTGTTTTTATCATTTACTTGTCATGTCGGAGGATTTATTTGTTCGATTATGAAGGGTATTTAAGTTTTGAACTAGTTTTTTTCTT</gDNA_template>
            <first_frame> R  S  I  F  F  L  F  H  F  L  L  K  F  V  S  K  :  S  *  K  R  R  K  K  N  G  E  D  L  L  H  R  S  W  I  C  W  W  P  H  H  G  S  H  C  T  Q  M  P  Q  D  *  S  G  R  C  *  Y  L  C  T  S  H  Y  C  L  E  Q  *  H  T  S  H  L  *  A  R  P  *  R  C  G  Q  A  M  P  R  Q  E  S  L  L  Q  H  R  C  G  E  T  C  A  R  G  *  Y  S  F  C  F  C  Q  H  S  Y  Q  D  *  G  S  W  S  R  Q  G  C  R  S  Y  L  L  G  E  C  S  P  Y  D  C  R  C  L  E  I  *  Q  N  S  C  *  E  I  N  C  S  S  K  N  C  *  G  N  *  K  D  F  D  P  Q  Q  Q  G  N  *  L  P  D  P  L  K  P  *  I  S  C  R  G  Y  C  N  R  R  P  L  *  T  *  Q  G  S  D  W  R  P  G  N  S  R  R  P  E  G  Y  P  S  I  E  G  C  L  C  S  L  G  P  *  S  Q  Y  H  Y  H  Q  L  V  V  R  *  A  L  K  V  G  C  Q  C  I  F  G  T  K  N  L  F  C  E  C  H  V  S  S  L  *  G  Y  R  S  K  R  F  T  G  G  I  C  C  W  *  G  L  E  N  W  S  Q  V  P  Q  R  K  C  W  F  W  W  I  L  L  P  E  G  Y  S  E  P  G  L  H  L  R  V  Q  W  S  A  *  G  C  *  I  L  E  T  S  Y  Q  D  *  *  L  S  E  E  S  F  C  Q  S  C  C  C  L  Y  V  Q  H  S  V  K  Q  E  S  C  N  S  R  F  C  F  Q  E  G  H  W  R  Y  S  R  D  P  C  N  *  C  M  Q  G  T  S  G  G  *  C  *  I  E  H  I  R  S  S  G  A  G  G  P  N  P  E  G  P  L  H  E  E  V  *  L  G  S  S  P  S  P  P  T  N  E  S  H  I  R  E  T  T  S  Q  C  Y  Y  G  C  L  R  C  N  K  R  C  P  C  C  L  H  S  H  R  V  G  *  V  Q  D  P  *  F  P  E  D  I  *  *  H  A  K  T  R  F  C  F  *  W  Q  E  C  C  E  C  *  K  A  K  R  D  W  V  Y  R  L  L  N  W  *  A  S  R  C  L  A  *  G  H  A  C  C  R  L  R  A  L  H  C  S  S  D  L  F  W  S  *  R  Y  *  L  S  D  N  H  Q  L  G  F  F  T  I  F  F  T  T  S  I  S  V  S  I  L  S  I  V  V  I  R  P  P  S  S  L  S  *  V  T  C  K  M  F  S  V  S  F  V  L  M  I  L  V  F  I  I  Y  L  S  C  R  R  I  Y  L  F  D  Y  E  G  Y  L  S  F  E  L  V  F  F   </first_frame>
            <second_frame>  D  P  S  F  S  S  F  I  F  S  S  N  S  S  L  R :   V  K  K  E  E  R  K  M  V  K  I  C  C  I  G  A  G  Y  V  G  G  P  T  M  A  V  I  A  L  K  C  P  K  I  E  V  V  V  V  D  I  S  V  P  R  I  T  A  W  N  S  D  T  L  P  I  Y  E  P  G  L  D  D  V  V  K  Q  C  R  G  K  N  L  F  F  S  T  D  V  E  K  H  V  H  E  A  D  I  V  F  V  S  V  N  T  P  T  K  T  R  G  L  G  A  G  K  A  A  D  L  T  Y  W  E  S  A  A  R  M  I  A  D  V  S  K  S  D  K  I  V  V  E  K  S  T  V  P  V  K  T  A  E  A  I  E  K  I  L  T  H  N  S  K  G  I  N  F  Q  I  L  S  N  P  E  F  L  A  E  G  T  A  I  D  D  L  F  K  P  D  R  V  L  I  G  G  R  E  T  P  G  G  Q  K  A  I  Q  A  L  K  D  V  Y  A  H  W  V  P  E  A  N  I  I  T  T  N  L  W  S  A  E  L  S  K  L  A  A  N  A  F  L  A  Q  R  I  S  S  V  N  A  M  S  A  L  C  E  A  T  G  A  N  V  S  Q  V  A  Y  A  V  G  K  D  S  R  I  G  P  K  F  L  N  A  S  V  G  F  G  G  S  C  F  Q  K  D  I  L  N  L  V  Y  I  C  E  C  N  G  L  P  E  V  A  E  Y  W  K  Q  V  I  K  I  N  D  Y  Q  K  S  R  F  V  N  R  V  V  A  S  M  F  N  T  V  S  N  K  K  V  A  I  L  G  F  A  F  K  K  D  T  G  D  T  R  E  T  P  A  I  D  V  C  K  G  L  V  G  D  N  A  K  L  S  I  Y  D  P  Q  V  Q  E  D  Q  I  Q  R  D  L  S  M  K  K  F  D  W  D  H  P  L  H  L  Q  P  M  S  P  T  S  V  K  Q  Q  V  S  V  T  M  D  A  Y  G  A  T  K  D  A  H  A  V  C  I  L  T  E  W  D  E  F  K  T  L  D  F  Q  K  I  Y  D  N  M  Q  K  P  A  F  V  F  D  G  R  N  V  V  N  A  E  K  L  R  E  I  G  F  I  V  Y  S  I  G  K  P  L  D  A  W  L  K  D  M  P  A  V  A  *  E  P  Y  I  A  R  V  T  C  F  G  L  K  D  I  S  Y  Q  T  I  I  S  W  D  S  L  L  F  F  L  P  L  Q  F  L  F  P  F  Y  P  L  *  S  *  D  H  H  R  H  Y  L  E  S  H  V  R  C  F  L  F  L  L  Y  *  *  Y  L  F  L  S  F  T  C  H  V  G  G  F  I  C  S  I  M  K  G  I  *  V  L  N  *  F  F  S  </second_frame>
            <third_frame>   I  H  L  F  P  L  S  F  S  P  Q  I  R  L  *   : E  L  K  K  K  K  E  K  W  *  R  F  A  A  *  E  L  D  M  L  V  A  P  P  W  Q  S  L  H  S  N  A  P  R  L  K  W  S  L  L  I  S  L  Y  L  A  L  L  P  G  T  V  T  H  F  P  S  M  S  Q  A  L  T  M  W  S  S  N  A  E  A  R  I  S  S  S  A  Q  M  W  R  N  M  C  T  R  L  I  *  F  L  F  L  S  T  L  L  P  R  L  G  V  L  E  Q  A  R  L  Q  I  L  P  T  G  R  V  Q  P  V  *  L  P  M  S  R  N  L  T  K  *  L  L  R  N  Q  L  F  Q  *  K  L  L  R  Q  L  K  R  F  *  P  T  T  A  R  E  L  T  S  R  S  S  Q  T  L  N  F  L  Q  R  V  L  Q  S  T  T  S  L  N  L  T  G  F  *  L  E  A  G  K  L  Q  E  A  R  R  L  S  K  H  *  R  M  F  M  L  I  G  S  L  K  P  I  S  L  P  P  T  C  G  P  L  S  S  Q  S  W  L  P  M  H  F  W  H  K  E  S  L  L  *  M  P  C  Q  L  S  V  R  L  Q  E  Q  T  F  H  R  W  H  M  L  L  V  R  T  R  E  L  V  P  S  S  S  T  Q  V  L  V  L  V  D  L  A  S  R  R  I  F  *  T  W  F  T  F  A  S  A  M  V  C  L  R  L  L  N  T  G  N  K  L  S  R  L  M  T  I  R  R  V  V  L  S  I  V  L  L  P  L  C  S  T  Q  C  Q  T  R  K  L  Q  F  *  V  L  L  S  R  R  T  L  A  I  L  E  R  P  L  Q  L  M  Y  A  R  D  *  W  G  I  M  L  N  *  A  Y  T  I  L  R  C  R  R  T  K  S  R  G  T  S  P  *  R  S  L  T  G  I  I  P  F  T  S  N  Q  *  V  P  H  P  *  N  N  K  S  V  L  L  W  M  P  T  V  Q  Q  K  M  P  M  L  S  A  F  S  Q  S  G  M  S  S  R  P  L  I  S  R  R  Y  M  I  T  C  K  N  P  L  L  F  L  M  A  G  M  L  *  M  L  K  S  *  E  R  L  G  L  S  S  T  Q  L  V  S  L  S  M  P  G  L  R  T  C  L  L  S  L  K  S  L  T  L  L  E  *  L  V  L  V  L  K  I  L  V  I  R  Q  S  S  A  G  I  L  Y  Y  F  F  Y  H  F  N  F  C  F  H  F  I  H  C  S  H  K  T  T  I  V  T  I  L  S  H  M  *  D  V  F  C  F  F  C  I  D  D  T  C  F  Y  H  L  L  V  M  S  E  D  L  F  V  R  L  *  R  V  F  K  F  *  T  S  F  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84535" stop="84581"/>
                    <exon start="85699" stop="87166"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1512</number_coding_nucleotides>
                  <number_encoded_amino_acids>504</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPSFSSFIFSSNSSLRVKKEERKMVKICCIGAGYVGGPTMAVIALKCPKIEVVVVDISVPRITAWNSDTLPIYEPGLDDVVKQCRGKNLFFSTDVEKHVHEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIDDLFKPDRVLIGGRETPGGQKAIQALKDVYAHWVPEANIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAYAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKVAILGFAFKKDTGDTRETPAIDVCKGLVGDNAKLSIYDPQVQEDQIQRDLSMKKFDWDHPLHLQPMSPTSVKQQVSVTMDAYGATKDAHAVCILTEWDEFKTLDFQKIYDNMQKPAFVFDGRNVVNAEKLREIGFIVYSIGKPLDAWLKDMPAVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="84534" e_stop="84581"/>
            <exon e_start="85699" e_stop="87438"/>
            <exon e_start="87640" e_stop="87655"/>
            <exon e_start="87952" e_stop="87960"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.315" acc_prob="0.881" e_score="0.688"/>
          <exon-only e_score="0.444"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84534" e_stop="84581" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.970">
            <gDNA_intron_boundary i_start="84582" i_stop="85698" i_length="1117"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85699" e_stop="87438" e_length="1740"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87439" i_stop="87639" i_length="201"/>
          </intron>
          <exon e_serial="3" e_score="0.688">
            <gDNA_exon_boundary e_start="87640" e_stop="87655" e_length="16"/>
          </exon>
          <intron i_serial="3" don_prob="0.315" acc_prob="0.881">
            <gDNA_intron_boundary i_start="87656" i_stop="87951" i_length="296"/>
          </intron>
          <exon e_serial="4" e_score="0.444">
            <gDNA_exon_boundary e_start="87952" e_stop="87960" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84534" stop="84581"/>
              <exon start="85699" stop="86316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84535" stop="84581"/>
              <exon start="85699" stop="86354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84552" stop="84581"/>
              <exon start="85699" stop="86199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85699" stop="86246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85699" stop="85869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85815" stop="86340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86020" stop="86877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86095" stop="86486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86106" stop="86943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86128" stop="86979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86156" stop="86432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86299" stop="86812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86325" stop="86747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86420" stop="86814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86424" stop="86808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86530" stop="87372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86771" stop="87390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86797" stop="87438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87019" stop="87430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87036" stop="87412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87293" stop="87438"/>
              <exon start="87640" stop="87655"/>
              <exon start="87952" stop="87960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302743" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATCCATCTTTTTCCTCTTTCATTTTCTCCTCAAATTCGTCTCTAAG : AGTTAAAAAAGAAGAAAGAAAAATGGTGAAGATTTGCTGCATAGGAGCTGGATATGTTGGTGGCCCCACCATGGCAGTCATTGCACTCAAATGCCCCAAGATTGAAGTGGTCGTTGTTGATATCTCTGTACCTCGCATTACTGCCTGGAACAGTGACACACTTCCCATCTATGAGCCAGGCCTTGACGATGTGGTCAAGCAATGCCGAGGCAAGAATCTCTTCTTCAGCACAGATGTGGAGAAACATGTGCACGAGGCTGATATAGTTTTTGTTTCTGTCAACACTCCTACCAAGACTAGGGGTCTTGGAGCAGGCAAGGCTGCAGATCTTACCTACTGGGAGAGTGCAGCCCGTATGATTGCCGATGTCTCGAAATCTGACAAAATAGTTGTTGAGAAATCAACTGTTCCAGTAAAAACTGCTGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGATTGGAGGCCGGGAAACTCCAGGAGGCCAGAAGGCTATCCAAGCATTGAAGGATGTTTATGCTCATTGGGTCCCTGAAGCCAATATCATTACCACCAACTTGTGGTCCGCTGAGCTCTCAAAGTTGGCTGCCAATGCATTTTTGGCACAAAGAATCTCTTCTGTGAATGCCATGTCAGCTCTCTGTGAGGCTACAGGAGCAAACGTTTCACAGGTGGCATATGCTGTTGGTAAGGACTCGAGAATTGGTCCCAAGTTCCTCAACGCAAGTGTTGGTTTTGGTGGATCTTGCTTCCAGAAGGATATTCTGAACCTGGTTTACATTTGCGAGTGCAATGGTCTGCCTGAGGTTGCTGAATACTGGAAACAAGTTATCAAGATTAATGACTATCAGAAGAGTCGTTTTGTCAATCGTGTTGTTGCCTCTATGTTCAACACAGTGTCAAACAAGAAAGTTGCAATTCTAGGTTTTGCTTTCAAGAAGGACACTGGCGATACTCGAGAGACCCCTGCAATTGATGTATGCAAGGGACTAGTGGGGGATAATGCTAAATTGAGCATATACGATCCTCAGGTGCAGGAGGACCAAATCCAGAGGGACCTCTCCATGAAGAAGTTTGACTGGGATCATCCCCTTCACCTCCAACCAATGAGTCCCACATCCGTGAAACAACAAGTCAGTGTTACTATGGATGCCTACGGTGCAACAAAAGATGCCCATGCTGTCTGCATTCTCACAGAGTGGGATGAGTTCAAGACCCTTGATTTCCAGAAGATATATGATAACATGCAAAAACCCGCTTTTGTTTTTGATGGCAGGAATGTTGTGAATGCTGAAAAGCTAAGAGAGATTGGGTTTATCGTCTACTCAATTGGTAAGCCTCTCGATGCCTGGCTTAAGGACATGCCTGCTGTCGCTTAAGAGCCTTACATTGCTCGAGTGACTTGTTTTGGTCTTAAAGATATTAGTTATCAGACAATCATCAGCTGGGATTCTTTACTATTTTTTTTACCACTTCAATTTCTGTTTCCATTTTATCCATTGTAGTCATAAGACCACCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTCTGTTTCTTTTGTATTGATGATACTTGTTTTTATCATTTACTTGTCATGTCGGAGGATTTATTTGTTCGATTATGAAGGGTATTTAAGTTTTGAACTA : ATAAAATCCAAAAAAG : ATGAACTAG</gDNA_template>
            <first_frame> R  S  I  F  F  L  F  H  F  L  L  K  F  V  S  K  :  S  *  K  R  R  K  K  N  G  E  D  L  L  H  R  S  W  I  C  W  W  P  H  H  G  S  H  C  T  Q  M  P  Q  D  *  S  G  R  C  *  Y  L  C  T  S  H  Y  C  L  E  Q  *  H  T  S  H  L  *  A  R  P  *  R  C  G  Q  A  M  P  R  Q  E  S  L  L  Q  H  R  C  G  E  T  C  A  R  G  *  Y  S  F  C  F  C  Q  H  S  Y  Q  D  *  G  S  W  S  R  Q  G  C  R  S  Y  L  L  G  E  C  S  P  Y  D  C  R  C  L  E  I  *  Q  N  S  C  *  E  I  N  C  S  S  K  N  C  *  G  N  *  K  D  F  D  P  Q  Q  Q  G  N  *  L  P  D  P  L  K  P  *  I  S  C  R  G  Y  C  N  R  R  P  L  *  T  *  Q  G  S  D  W  R  P  G  N  S  R  R  P  E  G  Y  P  S  I  E  G  C  L  C  S  L  G  P  *  S  Q  Y  H  Y  H  Q  L  V  V  R  *  A  L  K  V  G  C  Q  C  I  F  G  T  K  N  L  F  C  E  C  H  V  S  S  L  *  G  Y  R  S  K  R  F  T  G  G  I  C  C  W  *  G  L  E  N  W  S  Q  V  P  Q  R  K  C  W  F  W  W  I  L  L  P  E  G  Y  S  E  P  G  L  H  L  R  V  Q  W  S  A  *  G  C  *  I  L  E  T  S  Y  Q  D  *  *  L  S  E  E  S  F  C  Q  S  C  C  C  L  Y  V  Q  H  S  V  K  Q  E  S  C  N  S  R  F  C  F  Q  E  G  H  W  R  Y  S  R  D  P  C  N  *  C  M  Q  G  T  S  G  G  *  C  *  I  E  H  I  R  S  S  G  A  G  G  P  N  P  E  G  P  L  H  E  E  V  *  L  G  S  S  P  S  P  P  T  N  E  S  H  I  R  E  T  T  S  Q  C  Y  Y  G  C  L  R  C  N  K  R  C  P  C  C  L  H  S  H  R  V  G  *  V  Q  D  P  *  F  P  E  D  I  *  *  H  A  K  T  R  F  C  F  *  W  Q  E  C  C  E  C  *  K  A  K  R  D  W  V  Y  R  L  L  N  W  *  A  S  R  C  L  A  *  G  H  A  C  C  R  L  R  A  L  H  C  S  S  D  L  F  W  S  *  R  Y  *  L  S  D  N  H  Q  L  G  F  F  T  I  F  F  T  T  S  I  S  V  S  I  L  S  I  V  V  I  R  P  P  S  S  L  S  *  V  T  C  K  M  F  S  V  S  F  V  L  M  I  L  V  F  I  I  Y  L  S  C  R  R  I  Y  L  F  D  Y  E  G  Y  L  S  F  E  L  :  I  K  S  K  K   : D  E  L  </first_frame>
            <second_frame>  D  P  S  F  S  S  F  I  F  S  S  N  S  S  L  R :   V  K  K  E  E  R  K  M  V  K  I  C  C  I  G  A  G  Y  V  G  G  P  T  M  A  V  I  A  L  K  C  P  K  I  E  V  V  V  V  D  I  S  V  P  R  I  T  A  W  N  S  D  T  L  P  I  Y  E  P  G  L  D  D  V  V  K  Q  C  R  G  K  N  L  F  F  S  T  D  V  E  K  H  V  H  E  A  D  I  V  F  V  S  V  N  T  P  T  K  T  R  G  L  G  A  G  K  A  A  D  L  T  Y  W  E  S  A  A  R  M  I  A  D  V  S  K  S  D  K  I  V  V  E  K  S  T  V  P  V  K  T  A  E  A  I  E  K  I  L  T  H  N  S  K  G  I  N  F  Q  I  L  S  N  P  E  F  L  A  E  G  T  A  I  D  D  L  F  K  P  D  R  V  L  I  G  G  R  E  T  P  G  G  Q  K  A  I  Q  A  L  K  D  V  Y  A  H  W  V  P  E  A  N  I  I  T  T  N  L  W  S  A  E  L  S  K  L  A  A  N  A  F  L  A  Q  R  I  S  S  V  N  A  M  S  A  L  C  E  A  T  G  A  N  V  S  Q  V  A  Y  A  V  G  K  D  S  R  I  G  P  K  F  L  N  A  S  V  G  F  G  G  S  C  F  Q  K  D  I  L  N  L  V  Y  I  C  E  C  N  G  L  P  E  V  A  E  Y  W  K  Q  V  I  K  I  N  D  Y  Q  K  S  R  F  V  N  R  V  V  A  S  M  F  N  T  V  S  N  K  K  V  A  I  L  G  F  A  F  K  K  D  T  G  D  T  R  E  T  P  A  I  D  V  C  K  G  L  V  G  D  N  A  K  L  S  I  Y  D  P  Q  V  Q  E  D  Q  I  Q  R  D  L  S  M  K  K  F  D  W  D  H  P  L  H  L  Q  P  M  S  P  T  S  V  K  Q  Q  V  S  V  T  M  D  A  Y  G  A  T  K  D  A  H  A  V  C  I  L  T  E  W  D  E  F  K  T  L  D  F  Q  K  I  Y  D  N  M  Q  K  P  A  F  V  F  D  G  R  N  V  V  N  A  E  K  L  R  E  I  G  F  I  V  Y  S  I  G  K  P  L  D  A  W  L  K  D  M  P  A  V  A  *  E  P  Y  I  A  R  V  T  C  F  G  L  K  D  I  S  Y  Q  T  I  I  S  W  D  S  L  L  F  F  L  P  L  Q  F  L  F  P  F  Y  P  L  *  S  *  D  H  H  R  H  Y  L  E  S  H  V  R  C  F  L  F  L  L  Y  *  *  Y  L  F  L  S  F  T  C  H  V  G  G  F  I  C  S  I  M  K  G  I  *  V  L  N  * :   *  N  P  K  K  :  M  N  * </second_frame>
            <third_frame>   I  H  L  F  P  L  S  F  S  P  Q  I  R  L  *   : E  L  K  K  K  K  E  K  W  *  R  F  A  A  *  E  L  D  M  L  V  A  P  P  W  Q  S  L  H  S  N  A  P  R  L  K  W  S  L  L  I  S  L  Y  L  A  L  L  P  G  T  V  T  H  F  P  S  M  S  Q  A  L  T  M  W  S  S  N  A  E  A  R  I  S  S  S  A  Q  M  W  R  N  M  C  T  R  L  I  *  F  L  F  L  S  T  L  L  P  R  L  G  V  L  E  Q  A  R  L  Q  I  L  P  T  G  R  V  Q  P  V  *  L  P  M  S  R  N  L  T  K  *  L  L  R  N  Q  L  F  Q  *  K  L  L  R  Q  L  K  R  F  *  P  T  T  A  R  E  L  T  S  R  S  S  Q  T  L  N  F  L  Q  R  V  L  Q  S  T  T  S  L  N  L  T  G  F  *  L  E  A  G  K  L  Q  E  A  R  R  L  S  K  H  *  R  M  F  M  L  I  G  S  L  K  P  I  S  L  P  P  T  C  G  P  L  S  S  Q  S  W  L  P  M  H  F  W  H  K  E  S  L  L  *  M  P  C  Q  L  S  V  R  L  Q  E  Q  T  F  H  R  W  H  M  L  L  V  R  T  R  E  L  V  P  S  S  S  T  Q  V  L  V  L  V  D  L  A  S  R  R  I  F  *  T  W  F  T  F  A  S  A  M  V  C  L  R  L  L  N  T  G  N  K  L  S  R  L  M  T  I  R  R  V  V  L  S  I  V  L  L  P  L  C  S  T  Q  C  Q  T  R  K  L  Q  F  *  V  L  L  S  R  R  T  L  A  I  L  E  R  P  L  Q  L  M  Y  A  R  D  *  W  G  I  M  L  N  *  A  Y  T  I  L  R  C  R  R  T  K  S  R  G  T  S  P  *  R  S  L  T  G  I  I  P  F  T  S  N  Q  *  V  P  H  P  *  N  N  K  S  V  L  L  W  M  P  T  V  Q  Q  K  M  P  M  L  S  A  F  S  Q  S  G  M  S  S  R  P  L  I  S  R  R  Y  M  I  T  C  K  N  P  L  L  F  L  M  A  G  M  L  *  M  L  K  S  *  E  R  L  G  L  S  S  T  Q  L  V  S  L  S  M  P  G  L  R  T  C  L  L  S  L  K  S  L  T  L  L  E  *  L  V  L  V  L  K  I  L  V  I  R  Q  S  S  A  G  I  L  Y  Y  F  F  Y  H  F  N  F  C  F  H  F  I  H  C  S  H  K  T  T  I  V  T  I  L  S  H  M  *  D  V  F  C  F  F  C  I  D  D  T  C  F  Y  H  L  L  V  M  S  E  D  L  F  V  R  L  *  R  V  F  K  F  *  T   : N  K  I  Q  K  R :   *  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84535" stop="84581"/>
                    <exon start="85699" stop="87166"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1512</number_coding_nucleotides>
                  <number_encoded_amino_acids>504</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPSFSSFIFSSNSSLRVKKEERKMVKICCIGAGYVGGPTMAVIALKCPKIEVVVVDISVPRITAWNSDTLPIYEPGLDDVVKQCRGKNLFFSTDVEKHVHEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIDDLFKPDRVLIGGRETPGGQKAIQALKDVYAHWVPEANIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAYAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKVAILGFAFKKDTGDTRETPAIDVCKGLVGDNAKLSIYDPQVQEDQIQRDLSMKKFDWDHPLHLQPMSPTSVKQQVSVTMDAYGATKDAHAVCILTEWDEFKTLDFQKIYDNMQKPAFVFDGRNVVNAEKLREIGFIVYSIGKPLDAWLKDMPAVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="85683" e_stop="87449"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85683" e_stop="87449" e_length="1767"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85683" stop="86478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85699" stop="86246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85699" stop="85869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85815" stop="86340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86020" stop="86877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86095" stop="86486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86106" stop="86943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86128" stop="86979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86156" stop="86432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86299" stop="86812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86325" stop="86747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86420" stop="86814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86424" stop="86808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86530" stop="87372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86771" stop="87390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86797" stop="87438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87006" stop="87449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87019" stop="87430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87036" stop="87412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229240" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTGTCTGTTACAGAGTTAAAAAAGAAGAAAGAAAAATGGTGAAGATTTGCTGCATAGGAGCTGGATATGTTGGTGGCCCCACCATGGCAGTCATTGCACTCAAATGCCCCAAGATTGAAGTGGTCGTTGTTGATATCTCTGTACCTCGCATTACTGCCTGGAACAGTGACACACTTCCCATCTATGAGCCAGGCCTTGACGATGTGGTCAAGCAATGCCGAGGCAAGAATCTCTTCTTCAGCACAGATGTGGAGAAACATGTGCACGAGGCTGATATAGTTTTTGTTTCTGTCAACACTCCTACCAAGACTAGGGGTCTTGGAGCAGGCAAGGCTGCAGATCTTACCTACTGGGAGAGTGCAGCCCGTATGATTGCCGATGTCTCGAAATCTGACAAAATAGTTGTTGAGAAATCAACTGTTCCAGTAAAAACTGCTGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGATTGGAGGCCGGGAAACTCCAGGAGGCCAGAAGGCTATCCAAGCATTGAAGGATGTTTATGCTCATTGGGTCCCTGAAGCCAATATCATTACCACCAACTTGTGGTCCGCTGAGCTCTCAAAGTTGGCTGCCAATGCATTTTTGGCACAAAGAATCTCTTCTGTGAATGCCATGTCAGCTCTCTGTGAGGCTACAGGAGCAAACGTTTCACAGGTGGCATATGCTGTTGGTAAGGACTCGAGAATTGGTCCCAAGTTCCTCAACGCAAGTGTTGGTTTTGGTGGATCTTGCTTCCAGAAGGATATTCTGAACCTGGTTTACATTTGCGAGTGCAATGGTCTGCCTGAGGTTGCTGAATACTGGAAACAAGTTATCAAGATTAATGACTATCAGAAGAGTCGTTTTGTCAATCGTGTTGTTGCCTCTATGTTCAACACAGTGTCAAACAAGAAAGTTGCAATTCTAGGTTTTGCTTTCAAGAAGGACACTGGCGATACTCGAGAGACCCCTGCAATTGATGTATGCAAGGGACTAGTGGGGGATAATGCTAAATTGAGCATATACGATCCTCAGGTGCAGGAGGACCAAATCCAGAGGGACCTCTCCATGAAGAAGTTTGACTGGGATCATCCCCTTCACCTCCAACCAATGAGTCCCACATCCGTGAAACAACAAGTCAGTGTTACTATGGATGCCTACGGTGCAACAAAAGATGCCCATGCTGTCTGCATTCTCACAGAGTGGGATGAGTTCAAGACCCTTGATTTCCAGAAGATATATGATAACATGCAAAAACCCGCTTTTGTTTTTGATGGCAGGAATGTTGTGAATGCTGAAAAGCTAAGAGAGATTGGGTTTATCGTCTACTCAATTGGTAAGCCTCTCGATGCCTGGCTTAAGGACATGCCTGCTGTCGCTTAAGAGCCTTACATTGCTCGAGTGACTTGTTTTGGTCTTAAAGATATTAGTTATCAGACAATCATCAGCTGGGATTCTTTACTATTTTTTTTACCACTTCAATTTCTGTTTCCATTTTATCCATTGTAGTCATAAGACCACCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTCTGTTTCTTTTGTATTGATGATACTTGTTTTTATCATTTACTTGTCATGTCGGAGGATTTATTTGTTCGATTATGAAGGGTATTTAAGTTTTGAACTAGTTTTTTTCTT</gDNA_template>
            <first_frame> L  L  S  V  T  E  L  K  K  K  K  E  K  W  *  R  F  A  A  *  E  L  D  M  L  V  A  P  P  W  Q  S  L  H  S  N  A  P  R  L  K  W  S  L  L  I  S  L  Y  L  A  L  L  P  G  T  V  T  H  F  P  S  M  S  Q  A  L  T  M  W  S  S  N  A  E  A  R  I  S  S  S  A  Q  M  W  R  N  M  C  T  R  L  I  *  F  L  F  L  S  T  L  L  P  R  L  G  V  L  E  Q  A  R  L  Q  I  L  P  T  G  R  V  Q  P  V  *  L  P  M  S  R  N  L  T  K  *  L  L  R  N  Q  L  F  Q  *  K  L  L  R  Q  L  K  R  F  *  P  T  T  A  R  E  L  T  S  R  S  S  Q  T  L  N  F  L  Q  R  V  L  Q  S  T  T  S  L  N  L  T  G  F  *  L  E  A  G  K  L  Q  E  A  R  R  L  S  K  H  *  R  M  F  M  L  I  G  S  L  K  P  I  S  L  P  P  T  C  G  P  L  S  S  Q  S  W  L  P  M  H  F  W  H  K  E  S  L  L  *  M  P  C  Q  L  S  V  R  L  Q  E  Q  T  F  H  R  W  H  M  L  L  V  R  T  R  E  L  V  P  S  S  S  T  Q  V  L  V  L  V  D  L  A  S  R  R  I  F  *  T  W  F  T  F  A  S  A  M  V  C  L  R  L  L  N  T  G  N  K  L  S  R  L  M  T  I  R  R  V  V  L  S  I  V  L  L  P  L  C  S  T  Q  C  Q  T  R  K  L  Q  F  *  V  L  L  S  R  R  T  L  A  I  L  E  R  P  L  Q  L  M  Y  A  R  D  *  W  G  I  M  L  N  *  A  Y  T  I  L  R  C  R  R  T  K  S  R  G  T  S  P  *  R  S  L  T  G  I  I  P  F  T  S  N  Q  *  V  P  H  P  *  N  N  K  S  V  L  L  W  M  P  T  V  Q  Q  K  M  P  M  L  S  A  F  S  Q  S  G  M  S  S  R  P  L  I  S  R  R  Y  M  I  T  C  K  N  P  L  L  F  L  M  A  G  M  L  *  M  L  K  S  *  E  R  L  G  L  S  S  T  Q  L  V  S  L  S  M  P  G  L  R  T  C  L  L  S  L  K  S  L  T  L  L  E  *  L  V  L  V  L  K  I  L  V  I  R  Q  S  S  A  G  I  L  Y  Y  F  F  Y  H  F  N  F  C  F  H  F  I  H  C  S  H  K  T  T  I  V  T  I  L  S  H  M  *  D  V  F  C  F  F  C  I  D  D  T  C  F  Y  H  L  L  V  M  S  E  D  L  F  V  R  L  *  R  V  F  K  F  *  T  S  F  F  L </first_frame>
            <second_frame>  F  C  L  L  Q  S  *  K  R  R  K  K  N  G  E  D  L  L  H  R  S  W  I  C  W  W  P  H  H  G  S  H  C  T  Q  M  P  Q  D  *  S  G  R  C  *  Y  L  C  T  S  H  Y  C  L  E  Q  *  H  T  S  H  L  *  A  R  P  *  R  C  G  Q  A  M  P  R  Q  E  S  L  L  Q  H  R  C  G  E  T  C  A  R  G  *  Y  S  F  C  F  C  Q  H  S  Y  Q  D  *  G  S  W  S  R  Q  G  C  R  S  Y  L  L  G  E  C  S  P  Y  D  C  R  C  L  E  I  *  Q  N  S  C  *  E  I  N  C  S  S  K  N  C  *  G  N  *  K  D  F  D  P  Q  Q  Q  G  N  *  L  P  D  P  L  K  P  *  I  S  C  R  G  Y  C  N  R  R  P  L  *  T  *  Q  G  S  D  W  R  P  G  N  S  R  R  P  E  G  Y  P  S  I  E  G  C  L  C  S  L  G  P  *  S  Q  Y  H  Y  H  Q  L  V  V  R  *  A  L  K  V  G  C  Q  C  I  F  G  T  K  N  L  F  C  E  C  H  V  S  S  L  *  G  Y  R  S  K  R  F  T  G  G  I  C  C  W  *  G  L  E  N  W  S  Q  V  P  Q  R  K  C  W  F  W  W  I  L  L  P  E  G  Y  S  E  P  G  L  H  L  R  V  Q  W  S  A  *  G  C  *  I  L  E  T  S  Y  Q  D  *  *  L  S  E  E  S  F  C  Q  S  C  C  C  L  Y  V  Q  H  S  V  K  Q  E  S  C  N  S  R  F  C  F  Q  E  G  H  W  R  Y  S  R  D  P  C  N  *  C  M  Q  G  T  S  G  G  *  C  *  I  E  H  I  R  S  S  G  A  G  G  P  N  P  E  G  P  L  H  E  E  V  *  L  G  S  S  P  S  P  P  T  N  E  S  H  I  R  E  T  T  S  Q  C  Y  Y  G  C  L  R  C  N  K  R  C  P  C  C  L  H  S  H  R  V  G  *  V  Q  D  P  *  F  P  E  D  I  *  *  H  A  K  T  R  F  C  F  *  W  Q  E  C  C  E  C  *  K  A  K  R  D  W  V  Y  R  L  L  N  W  *  A  S  R  C  L  A  *  G  H  A  C  C  R  L  R  A  L  H  C  S  S  D  L  F  W  S  *  R  Y  *  L  S  D  N  H  Q  L  G  F  F  T  I  F  F  T  T  S  I  S  V  S  I  L  S  I  V  V  I  R  P  P  S  S  L  S  *  V  T  C  K  M  F  S  V  S  F  V  L  M  I  L  V  F  I  I  Y  L  S  C  R  R  I  Y  L  F  D  Y  E  G  Y  L  S  F  E  L  V  F  F   </second_frame>
            <third_frame>   F  V  C  Y  R  V  K  K  E  E  R  K  M  V  K  I  C  C  I  G  A  G  Y  V  G  G  P  T  M  A  V  I  A  L  K  C  P  K  I  E  V  V  V  V  D  I  S  V  P  R  I  T  A  W  N  S  D  T  L  P  I  Y  E  P  G  L  D  D  V  V  K  Q  C  R  G  K  N  L  F  F  S  T  D  V  E  K  H  V  H  E  A  D  I  V  F  V  S  V  N  T  P  T  K  T  R  G  L  G  A  G  K  A  A  D  L  T  Y  W  E  S  A  A  R  M  I  A  D  V  S  K  S  D  K  I  V  V  E  K  S  T  V  P  V  K  T  A  E  A  I  E  K  I  L  T  H  N  S  K  G  I  N  F  Q  I  L  S  N  P  E  F  L  A  E  G  T  A  I  D  D  L  F  K  P  D  R  V  L  I  G  G  R  E  T  P  G  G  Q  K  A  I  Q  A  L  K  D  V  Y  A  H  W  V  P  E  A  N  I  I  T  T  N  L  W  S  A  E  L  S  K  L  A  A  N  A  F  L  A  Q  R  I  S  S  V  N  A  M  S  A  L  C  E  A  T  G  A  N  V  S  Q  V  A  Y  A  V  G  K  D  S  R  I  G  P  K  F  L  N  A  S  V  G  F  G  G  S  C  F  Q  K  D  I  L  N  L  V  Y  I  C  E  C  N  G  L  P  E  V  A  E  Y  W  K  Q  V  I  K  I  N  D  Y  Q  K  S  R  F  V  N  R  V  V  A  S  M  F  N  T  V  S  N  K  K  V  A  I  L  G  F  A  F  K  K  D  T  G  D  T  R  E  T  P  A  I  D  V  C  K  G  L  V  G  D  N  A  K  L  S  I  Y  D  P  Q  V  Q  E  D  Q  I  Q  R  D  L  S  M  K  K  F  D  W  D  H  P  L  H  L  Q  P  M  S  P  T  S  V  K  Q  Q  V  S  V  T  M  D  A  Y  G  A  T  K  D  A  H  A  V  C  I  L  T  E  W  D  E  F  K  T  L  D  F  Q  K  I  Y  D  N  M  Q  K  P  A  F  V  F  D  G  R  N  V  V  N  A  E  K  L  R  E  I  G  F  I  V  Y  S  I  G  K  P  L  D  A  W  L  K  D  M  P  A  V  A  *  E  P  Y  I  A  R  V  T  C  F  G  L  K  D  I  S  Y  Q  T  I  I  S  W  D  S  L  L  F  F  L  P  L  Q  F  L  F  P  F  Y  P  L  *  S  *  D  H  H  R  H  Y  L  E  S  H  V  R  C  F  L  F  L  L  Y  *  *  Y  L  F  L  S  F  T  C  H  V  G  G  F  I  C  S  I  M  K  G  I  *  V  L  N  *  F  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85685" stop="87166"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1479</number_coding_nucleotides>
                  <number_encoded_amino_acids>493</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVCYRVKKEERKMVKICCIGAGYVGGPTMAVIALKCPKIEVVVVDISVPRITAWNSDTLPIYEPGLDDVVKQCRGKNLFFSTDVEKHVHEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIDDLFKPDRVLIGGRETPGGQKAIQALKDVYAHWVPEANIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAYAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKVAILGFAFKKDTGDTRETPAIDVCKGLVGDNAKLSIYDPQVQEDQIQRDLSMKKFDWDHPLHLQPMSPTSVKQQVSVTMDAYGATKDAHAVCILTEWDEFKTLDFQKIYDNMQKPAFVFDGRNVVNAEKLREIGFIVYSIGKPLDAWLKDMPAVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="84534" e_stop="84581"/>
            <exon e_start="85699" e_stop="87388"/>
            <exon e_start="87642" e_stop="87655"/>
            <exon e_start="87952" e_stop="87959"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.315" acc_prob="0.881" e_score="0.714"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84534" e_stop="84581" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.970">
            <gDNA_intron_boundary i_start="84582" i_stop="85698" i_length="1117"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85699" e_stop="87388" e_length="1690"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87389" i_stop="87641" i_length="253"/>
          </intron>
          <exon e_serial="3" e_score="0.714">
            <gDNA_exon_boundary e_start="87642" e_stop="87655" e_length="14"/>
          </exon>
          <intron i_serial="3" don_prob="0.315" acc_prob="0.881">
            <gDNA_intron_boundary i_start="87656" i_stop="87951" i_length="296"/>
          </intron>
          <exon e_serial="4" e_score="0.500">
            <gDNA_exon_boundary e_start="87952" e_stop="87959" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84534" stop="84581"/>
              <exon start="85699" stop="86316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84535" stop="84581"/>
              <exon start="85699" stop="86354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84552" stop="84581"/>
              <exon start="85699" stop="86199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85699" stop="86246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85699" stop="85869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85815" stop="86340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86020" stop="86877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86095" stop="86486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86106" stop="86943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86128" stop="86979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86156" stop="86432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86299" stop="86812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86325" stop="86747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86420" stop="86814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86424" stop="86808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86530" stop="87372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87131" stop="87388"/>
              <exon start="87642" stop="87655"/>
              <exon start="87952" stop="87959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228761" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATCCATCTTTTTCCTCTTTCATTTTCTCCTCAAATTCGTCTCTAAG : AGTTAAAAAAGAAGAAAGAAAAATGGTGAAGATTTGCTGCATAGGAGCTGGATATGTTGGTGGCCCCACCATGGCAGTCATTGCACTCAAATGCCCCAAGATTGAAGTGGTCGTTGTTGATATCTCTGTACCTCGCATTACTGCCTGGAACAGTGACACACTTCCCATCTATGAGCCAGGCCTTGACGATGTGGTCAAGCAATGCCGAGGCAAGAATCTCTTCTTCAGCACAGATGTGGAGAAACATGTGCACGAGGCTGATATAGTTTTTGTTTCTGTCAACACTCCTACCAAGACTAGGGGTCTTGGAGCAGGCAAGGCTGCAGATCTTACCTACTGGGAGAGTGCAGCCCGTATGATTGCCGATGTCTCGAAATCTGACAAAATAGTTGTTGAGAAATCAACTGTTCCAGTAAAAACTGCTGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGATTGGAGGCCGGGAAACTCCAGGAGGCCAGAAGGCTATCCAAGCATTGAAGGATGTTTATGCTCATTGGGTCCCTGAAGCCAATATCATTACCACCAACTTGTGGTCCGCTGAGCTCTCAAAGTTGGCTGCCAATGCATTTTTGGCACAAAGAATCTCTTCTGTGAATGCCATGTCAGCTCTCTGTGAGGCTACAGGAGCAAACGTTTCACAGGTGGCATATGCTGTTGGTAAGGACTCGAGAATTGGTCCCAAGTTCCTCAACGCAAGTGTTGGTTTTGGTGGATCTTGCTTCCAGAAGGATATTCTGAACCTGGTTTACATTTGCGAGTGCAATGGTCTGCCTGAGGTTGCTGAATACTGGAAACAAGTTATCAAGATTAATGACTATCAGAAGAGTCGTTTTGTCAATCGTGTTGTTGCCTCTATGTTCAACACAGTGTCAAACAAGAAAGTTGCAATTCTAGGTTTTGCTTTCAAGAAGGACACTGGCGATACTCGAGAGACCCCTGCAATTGATGTATGCAAGGGACTAGTGGGGGATAATGCTAAATTGAGCATATACGATCCTCAGGTGCAGGAGGACCAAATCCAGAGGGACCTCTCCATGAAGAAGTTTGACTGGGATCATCCCCTTCACCTCCAACCAATGAGTCCCACATCCGTGAAACAACAAGTCAGTGTTACTATGGATGCCTACGGTGCAACAAAAGATGCCCATGCTGTCTGCATTCTCACAGAGTGGGATGAGTTCAAGACCCTTGATTTCCAGAAGATATATGATAACATGCAAAAACCCGCTTTTGTTTTTGATGGCAGGAATGTTGTGAATGCTGAAAAGCTAAGAGAGATTGGGTTTATCGTCTACTCAATTGGTAAGCCTCTCGATGCCTGGCTTAAGGACATGCCTGCTGTCGCTTAAGAGCCTTACATTGCTCGAGTGACTTGTTTTGGTCTTAAAGATATTAGTTATCAGACAATCATCAGCTGGGATTCTTTACTATTTTTTTTACCACTTCAATTTCTGTTTCCATTTTATCCATTGTAGTCATAAGACCACCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTCTGTTTCTTTTGTATTGATGATACTTGTTTTTATCATTTACTTGTCAT : AAAATCCAAAAAAG : ATGAACTA</gDNA_template>
            <first_frame> R  S  I  F  F  L  F  H  F  L  L  K  F  V  S  K  :  S  *  K  R  R  K  K  N  G  E  D  L  L  H  R  S  W  I  C  W  W  P  H  H  G  S  H  C  T  Q  M  P  Q  D  *  S  G  R  C  *  Y  L  C  T  S  H  Y  C  L  E  Q  *  H  T  S  H  L  *  A  R  P  *  R  C  G  Q  A  M  P  R  Q  E  S  L  L  Q  H  R  C  G  E  T  C  A  R  G  *  Y  S  F  C  F  C  Q  H  S  Y  Q  D  *  G  S  W  S  R  Q  G  C  R  S  Y  L  L  G  E  C  S  P  Y  D  C  R  C  L  E  I  *  Q  N  S  C  *  E  I  N  C  S  S  K  N  C  *  G  N  *  K  D  F  D  P  Q  Q  Q  G  N  *  L  P  D  P  L  K  P  *  I  S  C  R  G  Y  C  N  R  R  P  L  *  T  *  Q  G  S  D  W  R  P  G  N  S  R  R  P  E  G  Y  P  S  I  E  G  C  L  C  S  L  G  P  *  S  Q  Y  H  Y  H  Q  L  V  V  R  *  A  L  K  V  G  C  Q  C  I  F  G  T  K  N  L  F  C  E  C  H  V  S  S  L  *  G  Y  R  S  K  R  F  T  G  G  I  C  C  W  *  G  L  E  N  W  S  Q  V  P  Q  R  K  C  W  F  W  W  I  L  L  P  E  G  Y  S  E  P  G  L  H  L  R  V  Q  W  S  A  *  G  C  *  I  L  E  T  S  Y  Q  D  *  *  L  S  E  E  S  F  C  Q  S  C  C  C  L  Y  V  Q  H  S  V  K  Q  E  S  C  N  S  R  F  C  F  Q  E  G  H  W  R  Y  S  R  D  P  C  N  *  C  M  Q  G  T  S  G  G  *  C  *  I  E  H  I  R  S  S  G  A  G  G  P  N  P  E  G  P  L  H  E  E  V  *  L  G  S  S  P  S  P  P  T  N  E  S  H  I  R  E  T  T  S  Q  C  Y  Y  G  C  L  R  C  N  K  R  C  P  C  C  L  H  S  H  R  V  G  *  V  Q  D  P  *  F  P  E  D  I  *  *  H  A  K  T  R  F  C  F  *  W  Q  E  C  C  E  C  *  K  A  K  R  D  W  V  Y  R  L  L  N  W  *  A  S  R  C  L  A  *  G  H  A  C  C  R  L  R  A  L  H  C  S  S  D  L  F  W  S  *  R  Y  *  L  S  D  N  H  Q  L  G  F  F  T  I  F  F  T  T  S  I  S  V  S  I  L  S  I  V  V  I  R  P  P  S  S  L  S  *  V  T  C  K  M  F  S  V  S  F  V  L  M  I  L  V  F  I  I  Y  L  S   : *  N  P  K  K  :  M  N   </first_frame>
            <second_frame>  D  P  S  F  S  S  F  I  F  S  S  N  S  S  L  R :   V  K  K  E  E  R  K  M  V  K  I  C  C  I  G  A  G  Y  V  G  G  P  T  M  A  V  I  A  L  K  C  P  K  I  E  V  V  V  V  D  I  S  V  P  R  I  T  A  W  N  S  D  T  L  P  I  Y  E  P  G  L  D  D  V  V  K  Q  C  R  G  K  N  L  F  F  S  T  D  V  E  K  H  V  H  E  A  D  I  V  F  V  S  V  N  T  P  T  K  T  R  G  L  G  A  G  K  A  A  D  L  T  Y  W  E  S  A  A  R  M  I  A  D  V  S  K  S  D  K  I  V  V  E  K  S  T  V  P  V  K  T  A  E  A  I  E  K  I  L  T  H  N  S  K  G  I  N  F  Q  I  L  S  N  P  E  F  L  A  E  G  T  A  I  D  D  L  F  K  P  D  R  V  L  I  G  G  R  E  T  P  G  G  Q  K  A  I  Q  A  L  K  D  V  Y  A  H  W  V  P  E  A  N  I  I  T  T  N  L  W  S  A  E  L  S  K  L  A  A  N  A  F  L  A  Q  R  I  S  S  V  N  A  M  S  A  L  C  E  A  T  G  A  N  V  S  Q  V  A  Y  A  V  G  K  D  S  R  I  G  P  K  F  L  N  A  S  V  G  F  G  G  S  C  F  Q  K  D  I  L  N  L  V  Y  I  C  E  C  N  G  L  P  E  V  A  E  Y  W  K  Q  V  I  K  I  N  D  Y  Q  K  S  R  F  V  N  R  V  V  A  S  M  F  N  T  V  S  N  K  K  V  A  I  L  G  F  A  F  K  K  D  T  G  D  T  R  E  T  P  A  I  D  V  C  K  G  L  V  G  D  N  A  K  L  S  I  Y  D  P  Q  V  Q  E  D  Q  I  Q  R  D  L  S  M  K  K  F  D  W  D  H  P  L  H  L  Q  P  M  S  P  T  S  V  K  Q  Q  V  S  V  T  M  D  A  Y  G  A  T  K  D  A  H  A  V  C  I  L  T  E  W  D  E  F  K  T  L  D  F  Q  K  I  Y  D  N  M  Q  K  P  A  F  V  F  D  G  R  N  V  V  N  A  E  K  L  R  E  I  G  F  I  V  Y  S  I  G  K  P  L  D  A  W  L  K  D  M  P  A  V  A  *  E  P  Y  I  A  R  V  T  C  F  G  L  K  D  I  S  Y  Q  T  I  I  S  W  D  S  L  L  F  F  L  P  L  Q  F  L  F  P  F  Y  P  L  *  S  *  D  H  H  R  H  Y  L  E  S  H  V  R  C  F  L  F  L  L  Y  *  *  Y  L  F  L  S  F  T  C  H  :  K  I  Q  K  R :   *  T  </second_frame>
            <third_frame>   I  H  L  F  P  L  S  F  S  P  Q  I  R  L  *   : E  L  K  K  K  K  E  K  W  *  R  F  A  A  *  E  L  D  M  L  V  A  P  P  W  Q  S  L  H  S  N  A  P  R  L  K  W  S  L  L  I  S  L  Y  L  A  L  L  P  G  T  V  T  H  F  P  S  M  S  Q  A  L  T  M  W  S  S  N  A  E  A  R  I  S  S  S  A  Q  M  W  R  N  M  C  T  R  L  I  *  F  L  F  L  S  T  L  L  P  R  L  G  V  L  E  Q  A  R  L  Q  I  L  P  T  G  R  V  Q  P  V  *  L  P  M  S  R  N  L  T  K  *  L  L  R  N  Q  L  F  Q  *  K  L  L  R  Q  L  K  R  F  *  P  T  T  A  R  E  L  T  S  R  S  S  Q  T  L  N  F  L  Q  R  V  L  Q  S  T  T  S  L  N  L  T  G  F  *  L  E  A  G  K  L  Q  E  A  R  R  L  S  K  H  *  R  M  F  M  L  I  G  S  L  K  P  I  S  L  P  P  T  C  G  P  L  S  S  Q  S  W  L  P  M  H  F  W  H  K  E  S  L  L  *  M  P  C  Q  L  S  V  R  L  Q  E  Q  T  F  H  R  W  H  M  L  L  V  R  T  R  E  L  V  P  S  S  S  T  Q  V  L  V  L  V  D  L  A  S  R  R  I  F  *  T  W  F  T  F  A  S  A  M  V  C  L  R  L  L  N  T  G  N  K  L  S  R  L  M  T  I  R  R  V  V  L  S  I  V  L  L  P  L  C  S  T  Q  C  Q  T  R  K  L  Q  F  *  V  L  L  S  R  R  T  L  A  I  L  E  R  P  L  Q  L  M  Y  A  R  D  *  W  G  I  M  L  N  *  A  Y  T  I  L  R  C  R  R  T  K  S  R  G  T  S  P  *  R  S  L  T  G  I  I  P  F  T  S  N  Q  *  V  P  H  P  *  N  N  K  S  V  L  L  W  M  P  T  V  Q  Q  K  M  P  M  L  S  A  F  S  Q  S  G  M  S  S  R  P  L  I  S  R  R  Y  M  I  T  C  K  N  P  L  L  F  L  M  A  G  M  L  *  M  L  K  S  *  E  R  L  G  L  S  S  T  Q  L  V  S  L  S  M  P  G  L  R  T  C  L  L  S  L  K  S  L  T  L  L  E  *  L  V  L  V  L  K  I  L  V  I  R  Q  S  S  A  G  I  L  Y  Y  F  F  Y  H  F  N  F  C  F  H  F  I  H  C  S  H  K  T  T  I  V  T  I  L  S  H  M  *  D  V  F  C  F  F  C  I  D  D  T  C  F  Y  H  L  L  V  I :   K  S  K  K   : D  E  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84535" stop="84581"/>
                    <exon start="85699" stop="87166"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1512</number_coding_nucleotides>
                  <number_encoded_amino_acids>504</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPSFSSFIFSSNSSLRVKKEERKMVKICCIGAGYVGGPTMAVIALKCPKIEVVVVDISVPRITAWNSDTLPIYEPGLDDVVKQCRGKNLFFSTDVEKHVHEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIDDLFKPDRVLIGGRETPGGQKAIQALKDVYAHWVPEANIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAYAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKVAILGFAFKKDTGDTRETPAIDVCKGLVGDNAKLSIYDPQVQEDQIQRDLSMKKFDWDHPLHLQPMSPTSVKQQVSVTMDAYGATKDAHAVCILTEWDEFKTLDFQKIYDNMQKPAFVFDGRNVVNAEKLREIGFIVYSIGKPLDAWLKDMPAVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="84534" e_stop="84581"/>
            <exon e_start="85699" e_stop="87386"/>
            <exon e_start="89036" e_stop="89059"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84534" e_stop="84581" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.970">
            <gDNA_intron_boundary i_start="84582" i_stop="85698" i_length="1117"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85699" e_stop="87386" e_length="1688"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87387" i_stop="89035" i_length="1649"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="89036" e_stop="89059" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84534" stop="84581"/>
              <exon start="85699" stop="86316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84535" stop="84581"/>
              <exon start="85699" stop="86354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84552" stop="84581"/>
              <exon start="85699" stop="86199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85699" stop="86246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85699" stop="85869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85815" stop="86340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86020" stop="86877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86095" stop="86486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86106" stop="86943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86128" stop="86979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86156" stop="86432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86299" stop="86812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86325" stop="86747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86420" stop="86814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86424" stop="86808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86530" stop="87372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87034" stop="87386"/>
              <exon start="89036" stop="89059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229049" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATCCATCTTTTTCCTCTTTCATTTTCTCCTCAAATTCGTCTCTAAG : AGTTAAAAAAGAAGAAAGAAAAATGGTGAAGATTTGCTGCATAGGAGCTGGATATGTTGGTGGCCCCACCATGGCAGTCATTGCACTCAAATGCCCCAAGATTGAAGTGGTCGTTGTTGATATCTCTGTACCTCGCATTACTGCCTGGAACAGTGACACACTTCCCATCTATGAGCCAGGCCTTGACGATGTGGTCAAGCAATGCCGAGGCAAGAATCTCTTCTTCAGCACAGATGTGGAGAAACATGTGCACGAGGCTGATATAGTTTTTGTTTCTGTCAACACTCCTACCAAGACTAGGGGTCTTGGAGCAGGCAAGGCTGCAGATCTTACCTACTGGGAGAGTGCAGCCCGTATGATTGCCGATGTCTCGAAATCTGACAAAATAGTTGTTGAGAAATCAACTGTTCCAGTAAAAACTGCTGAGGCAATTGAAAAGATTTTGACCCACAACAGCAAGGGAATTAACTTCCAGATCCTCTCAAACCCTGAATTTCTTGCAGAGGGTACTGCAATCGACGACCTCTTTAAACCTGACAGGGTTCTGATTGGAGGCCGGGAAACTCCAGGAGGCCAGAAGGCTATCCAAGCATTGAAGGATGTTTATGCTCATTGGGTCCCTGAAGCCAATATCATTACCACCAACTTGTGGTCCGCTGAGCTCTCAAAGTTGGCTGCCAATGCATTTTTGGCACAAAGAATCTCTTCTGTGAATGCCATGTCAGCTCTCTGTGAGGCTACAGGAGCAAACGTTTCACAGGTGGCATATGCTGTTGGTAAGGACTCGAGAATTGGTCCCAAGTTCCTCAACGCAAGTGTTGGTTTTGGTGGATCTTGCTTCCAGAAGGATATTCTGAACCTGGTTTACATTTGCGAGTGCAATGGTCTGCCTGAGGTTGCTGAATACTGGAAACAAGTTATCAAGATTAATGACTATCAGAAGAGTCGTTTTGTCAATCGTGTTGTTGCCTCTATGTTCAACACAGTGTCAAACAAGAAAGTTGCAATTCTAGGTTTTGCTTTCAAGAAGGACACTGGCGATACTCGAGAGACCCCTGCAATTGATGTATGCAAGGGACTAGTGGGGGATAATGCTAAATTGAGCATATACGATCCTCAGGTGCAGGAGGACCAAATCCAGAGGGACCTCTCCATGAAGAAGTTTGACTGGGATCATCCCCTTCACCTCCAACCAATGAGTCCCACATCCGTGAAACAACAAGTCAGTGTTACTATGGATGCCTACGGTGCAACAAAAGATGCCCATGCTGTCTGCATTCTCACAGAGTGGGATGAGTTCAAGACCCTTGATTTCCAGAAGATATATGATAACATGCAAAAACCCGCTTTTGTTTTTGATGGCAGGAATGTTGTGAATGCTGAAAAGCTAAGAGAGATTGGGTTTATCGTCTACTCAATTGGTAAGCCTCTCGATGCCTGGCTTAAGGACATGCCTGCTGTCGCTTAAGAGCCTTACATTGCTCGAGTGACTTGTTTTGGTCTTAAAGATATTAGTTATCAGACAATCATCAGCTGGGATTCTTTACTATTTTTTTTACCACTTCAATTTCTGTTTCCATTTTATCCATTGTAGTCATAAGACCACCATCGTCACTATCTTGAGTCACATGTAAGATGTTTTCTGTTTCTTTTGTATTGATGATACTTGTTTTTATCATTTACTTGTC : CATGAATCAAGAAAAGGAAAATAA</gDNA_template>
            <first_frame> R  S  I  F  F  L  F  H  F  L  L  K  F  V  S  K  :  S  *  K  R  R  K  K  N  G  E  D  L  L  H  R  S  W  I  C  W  W  P  H  H  G  S  H  C  T  Q  M  P  Q  D  *  S  G  R  C  *  Y  L  C  T  S  H  Y  C  L  E  Q  *  H  T  S  H  L  *  A  R  P  *  R  C  G  Q  A  M  P  R  Q  E  S  L  L  Q  H  R  C  G  E  T  C  A  R  G  *  Y  S  F  C  F  C  Q  H  S  Y  Q  D  *  G  S  W  S  R  Q  G  C  R  S  Y  L  L  G  E  C  S  P  Y  D  C  R  C  L  E  I  *  Q  N  S  C  *  E  I  N  C  S  S  K  N  C  *  G  N  *  K  D  F  D  P  Q  Q  Q  G  N  *  L  P  D  P  L  K  P  *  I  S  C  R  G  Y  C  N  R  R  P  L  *  T  *  Q  G  S  D  W  R  P  G  N  S  R  R  P  E  G  Y  P  S  I  E  G  C  L  C  S  L  G  P  *  S  Q  Y  H  Y  H  Q  L  V  V  R  *  A  L  K  V  G  C  Q  C  I  F  G  T  K  N  L  F  C  E  C  H  V  S  S  L  *  G  Y  R  S  K  R  F  T  G  G  I  C  C  W  *  G  L  E  N  W  S  Q  V  P  Q  R  K  C  W  F  W  W  I  L  L  P  E  G  Y  S  E  P  G  L  H  L  R  V  Q  W  S  A  *  G  C  *  I  L  E  T  S  Y  Q  D  *  *  L  S  E  E  S  F  C  Q  S  C  C  C  L  Y  V  Q  H  S  V  K  Q  E  S  C  N  S  R  F  C  F  Q  E  G  H  W  R  Y  S  R  D  P  C  N  *  C  M  Q  G  T  S  G  G  *  C  *  I  E  H  I  R  S  S  G  A  G  G  P  N  P  E  G  P  L  H  E  E  V  *  L  G  S  S  P  S  P  P  T  N  E  S  H  I  R  E  T  T  S  Q  C  Y  Y  G  C  L  R  C  N  K  R  C  P  C  C  L  H  S  H  R  V  G  *  V  Q  D  P  *  F  P  E  D  I  *  *  H  A  K  T  R  F  C  F  *  W  Q  E  C  C  E  C  *  K  A  K  R  D  W  V  Y  R  L  L  N  W  *  A  S  R  C  L  A  *  G  H  A  C  C  R  L  R  A  L  H  C  S  S  D  L  F  W  S  *  R  Y  *  L  S  D  N  H  Q  L  G  F  F  T  I  F  F  T  T  S  I  S  V  S  I  L  S  I  V  V  I  R  P  P  S  S  L  S  *  V  T  C  K  M  F  S  V  S  F  V  L  M  I  L  V  F  I  I  Y  L  S :   M  N  Q  E  K  E  N   </first_frame>
            <second_frame>  D  P  S  F  S  S  F  I  F  S  S  N  S  S  L  R :   V  K  K  E  E  R  K  M  V  K  I  C  C  I  G  A  G  Y  V  G  G  P  T  M  A  V  I  A  L  K  C  P  K  I  E  V  V  V  V  D  I  S  V  P  R  I  T  A  W  N  S  D  T  L  P  I  Y  E  P  G  L  D  D  V  V  K  Q  C  R  G  K  N  L  F  F  S  T  D  V  E  K  H  V  H  E  A  D  I  V  F  V  S  V  N  T  P  T  K  T  R  G  L  G  A  G  K  A  A  D  L  T  Y  W  E  S  A  A  R  M  I  A  D  V  S  K  S  D  K  I  V  V  E  K  S  T  V  P  V  K  T  A  E  A  I  E  K  I  L  T  H  N  S  K  G  I  N  F  Q  I  L  S  N  P  E  F  L  A  E  G  T  A  I  D  D  L  F  K  P  D  R  V  L  I  G  G  R  E  T  P  G  G  Q  K  A  I  Q  A  L  K  D  V  Y  A  H  W  V  P  E  A  N  I  I  T  T  N  L  W  S  A  E  L  S  K  L  A  A  N  A  F  L  A  Q  R  I  S  S  V  N  A  M  S  A  L  C  E  A  T  G  A  N  V  S  Q  V  A  Y  A  V  G  K  D  S  R  I  G  P  K  F  L  N  A  S  V  G  F  G  G  S  C  F  Q  K  D  I  L  N  L  V  Y  I  C  E  C  N  G  L  P  E  V  A  E  Y  W  K  Q  V  I  K  I  N  D  Y  Q  K  S  R  F  V  N  R  V  V  A  S  M  F  N  T  V  S  N  K  K  V  A  I  L  G  F  A  F  K  K  D  T  G  D  T  R  E  T  P  A  I  D  V  C  K  G  L  V  G  D  N  A  K  L  S  I  Y  D  P  Q  V  Q  E  D  Q  I  Q  R  D  L  S  M  K  K  F  D  W  D  H  P  L  H  L  Q  P  M  S  P  T  S  V  K  Q  Q  V  S  V  T  M  D  A  Y  G  A  T  K  D  A  H  A  V  C  I  L  T  E  W  D  E  F  K  T  L  D  F  Q  K  I  Y  D  N  M  Q  K  P  A  F  V  F  D  G  R  N  V  V  N  A  E  K  L  R  E  I  G  F  I  V  Y  S  I  G  K  P  L  D  A  W  L  K  D  M  P  A  V  A  *  E  P  Y  I  A  R  V  T  C  F  G  L  K  D  I  S  Y  Q  T  I  I  S  W  D  S  L  L  F  F  L  P  L  Q  F  L  F  P  F  Y  P  L  *  S  *  D  H  H  R  H  Y  L  E  S  H  V  R  C  F  L  F  L  L  Y  *  *  Y  L  F  L  S  F  T  C   : P  *  I  K  K  R  K  I  </second_frame>
            <third_frame>   I  H  L  F  P  L  S  F  S  P  Q  I  R  L  *   : E  L  K  K  K  K  E  K  W  *  R  F  A  A  *  E  L  D  M  L  V  A  P  P  W  Q  S  L  H  S  N  A  P  R  L  K  W  S  L  L  I  S  L  Y  L  A  L  L  P  G  T  V  T  H  F  P  S  M  S  Q  A  L  T  M  W  S  S  N  A  E  A  R  I  S  S  S  A  Q  M  W  R  N  M  C  T  R  L  I  *  F  L  F  L  S  T  L  L  P  R  L  G  V  L  E  Q  A  R  L  Q  I  L  P  T  G  R  V  Q  P  V  *  L  P  M  S  R  N  L  T  K  *  L  L  R  N  Q  L  F  Q  *  K  L  L  R  Q  L  K  R  F  *  P  T  T  A  R  E  L  T  S  R  S  S  Q  T  L  N  F  L  Q  R  V  L  Q  S  T  T  S  L  N  L  T  G  F  *  L  E  A  G  K  L  Q  E  A  R  R  L  S  K  H  *  R  M  F  M  L  I  G  S  L  K  P  I  S  L  P  P  T  C  G  P  L  S  S  Q  S  W  L  P  M  H  F  W  H  K  E  S  L  L  *  M  P  C  Q  L  S  V  R  L  Q  E  Q  T  F  H  R  W  H  M  L  L  V  R  T  R  E  L  V  P  S  S  S  T  Q  V  L  V  L  V  D  L  A  S  R  R  I  F  *  T  W  F  T  F  A  S  A  M  V  C  L  R  L  L  N  T  G  N  K  L  S  R  L  M  T  I  R  R  V  V  L  S  I  V  L  L  P  L  C  S  T  Q  C  Q  T  R  K  L  Q  F  *  V  L  L  S  R  R  T  L  A  I  L  E  R  P  L  Q  L  M  Y  A  R  D  *  W  G  I  M  L  N  *  A  Y  T  I  L  R  C  R  R  T  K  S  R  G  T  S  P  *  R  S  L  T  G  I  I  P  F  T  S  N  Q  *  V  P  H  P  *  N  N  K  S  V  L  L  W  M  P  T  V  Q  Q  K  M  P  M  L  S  A  F  S  Q  S  G  M  S  S  R  P  L  I  S  R  R  Y  M  I  T  C  K  N  P  L  L  F  L  M  A  G  M  L  *  M  L  K  S  *  E  R  L  G  L  S  S  T  Q  L  V  S  L  S  M  P  G  L  R  T  C  L  L  S  L  K  S  L  T  L  L  E  *  L  V  L  V  L  K  I  L  V  I  R  Q  S  S  A  G  I  L  Y  Y  F  F  Y  H  F  N  F  C  F  H  F  I  H  C  S  H  K  T  T  I  V  T  I  L  S  H  M  *  D  V  F  C  F  F  C  I  D  D  T  C  F  Y  H  L  L  V  :  H  E  S  R  K  G  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84535" stop="84581"/>
                    <exon start="85699" stop="87166"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1512</number_coding_nucleotides>
                  <number_encoded_amino_acids>504</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPSFSSFIFSSNSSLRVKKEERKMVKICCIGAGYVGGPTMAVIALKCPKIEVVVVDISVPRITAWNSDTLPIYEPGLDDVVKQCRGKNLFFSTDVEKHVHEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIDDLFKPDRVLIGGRETPGGQKAIQALKDVYAHWVPEANIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAYAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKVAILGFAFKKDTGDTRETPAIDVCKGLVGDNAKLSIYDPQVQEDQIQRDLSMKKFDWDHPLHLQPMSPTSVKQQVSVTMDAYGATKDAHAVCILTEWDEFKTLDFQKIYDNMQKPAFVFDGRNVVNAEKLREIGFIVYSIGKPLDAWLKDMPAVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="86615" PGL_stop="85883"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86615" e_stop="85883"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="86615" e_stop="85883" e_length="733"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86615" stop="85883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370821" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGTTTCCAGTATTCAGCAACCTCAGGCAGACCATTGCACTCGCAAATGTAAACCAGGTTCAGAATATCCTTCTGGAAGCAAGATCCACCAAAACCAACACTTGCGTTGAGGAACTTGGGACCAATTCTCGAGTCCTTACCAACAGCATATGCCACCTGTGAAACGTTTGCTCCTGTAGCCTCACAGAGAGCTGACATGGCATTCACAGAAGAGATTCTTTGTGCCAAAAATGCATTGGCAGCCAACTTTGAGAGCTCAGCGGACCACAAGTTGGTGGTAATGATATTGGCTTCAGGGACCCAATGAGCATAAACATCCTTCAATGCTTGGATAGCCTTCTGGCCTCCTGGAGTTTCCCGGCCTCCAATCAGAACCCTGTCAGGTTTAAAGAGGTCGTCGATTGCAGTACCCTCTGCAAGAAATTCAGGGTTTGAGAGGATCTGGAAGTTAATTCCCTTGCTGTTGTGGGTCAAAATCTTTTCAATTGCCTCAGCAGTTTTTACTGGAACAGTTGATTTCTCAACAACTATTTTGTCAGATTTCGAGACATCGGCAATCATACGGGCTGCACTCTCCCAGTAGGTAAGATCTGCAGCCTTGCCTGCTCCAAGACCCCTAGTCTTGGTAGGAGTGTTGACAGAAACAAAAACTATATCAGCCTCGTGCACATGTTTCTCCACATCTGTGCTGAAGAAGAGATTCTTGCCTCGGCATTGCTTGACCACATCGTC</gDNA_template>
            <first_frame> L  V  S  S  I  Q  Q  P  Q  A  D  H  C  T  R  K  C  K  P  G  S  E  Y  P  S  G  S  K  I  H  Q  N  Q  H  L  R  *  G  T  W  D  Q  F  S  S  P  Y  Q  Q  H  M  P  P  V  K  R  L  L  L  *  P  H  R  E  L  T  W  H  S  Q  K  R  F  F  V  P  K  M  H  W  Q  P  T  L  R  A  Q  R  T  T  S  W  W  *  *  Y  W  L  Q  G  P  N  E  H  K  H  P  S  M  L  G  *  P  S  G  L  L  E  F  P  G  L  Q  S  E  P  C  Q  V  *  R  G  R  R  L  Q  Y  P  L  Q  E  I  Q  G  L  R  G  S  G  S  *  F  P  C  C  C  G  S  K  S  F  Q  L  P  Q  Q  F  L  L  E  Q  L  I  S  Q  Q  L  F  C  Q  I  S  R  H  R  Q  S  Y  G  L  H  S  P  S  R  *  D  L  Q  P  C  L  L  Q  D  P  *  S  W  *  E  C  *  Q  K  Q  K  L  Y  Q  P  R  A  H  V  S  P  H  L  C  *  R  R  D  S  C  L  G  I  A  *  P  H  R  </first_frame>
            <second_frame>  L  F  P  V  F  S  N  L  R  Q  T  I  A  L  A  N  V  N  Q  V  Q  N  I  L  L  E  A  R  S  T  K  T  N  T  C  V  E  E  L  G  T  N  S  R  V  L  T  N  S  I  C  H  L  *  N  V  C  S  C  S  L  T  E  S  *  H  G  I  H  R  R  D  S  L  C  Q  K  C  I  G  S  Q  L  *  E  L  S  G  P  Q  V  G  G  N  D  I  G  F  R  D  P  M  S  I  N  I  L  Q  C  L  D  S  L  L  A  S  W  S  F  P  A  S  N  Q  N  P  V  R  F  K  E  V  V  D  C  S  T  L  C  K  K  F  R  V  *  E  D  L  E  V  N  S  L  A  V  V  G  Q  N  L  F  N  C  L  S  S  F  Y  W  N  S  *  F  L  N  N  Y  F  V  R  F  R  D  I  G  N  H  T  G  C  T  L  P  V  G  K  I  C  S  L  A  C  S  K  T  P  S  L  G  R  S  V  D  R  N  K  N  Y  I  S  L  V  H  M  F  L  H  I  C  A  E  E  E  I  L  A  S  A  L  L  D  H  I  V </second_frame>
            <third_frame>   C  F  Q  Y  S  A  T  S  G  R  P  L  H  S  Q  M  *  T  R  F  R  I  S  F  W  K  Q  D  P  P  K  P  T  L  A  L  R  N  L  G  P  I  L  E  S  L  P  T  A  Y  A  T  C  E  T  F  A  P  V  A  S  Q  R  A  D  M  A  F  T  E  E  I  L  C  A  K  N  A  L  A  A  N  F  E  S  S  A  D  H  K  L  V  V  M  I  L  A  S  G  T  Q  *  A  *  T  S  F  N  A  W  I  A  F  W  P  P  G  V  S  R  P  P  I  R  T  L  S  G  L  K  R  S  S  I  A  V  P  S  A  R  N  S  G  F  E  R  I  W  K  L  I  P  L  L  L  W  V  K  I  F  S  I  A  S  A  V  F  T  G  T  V  D  F  S  T  T  I  L  S  D  F  E  T  S  A  I  I  R  A  A  L  S  Q  *  V  R  S  A  A  L  P  A  P  R  P  L  V  L  V  G  V  L  T  E  T  K  T  I  S  A  S  C  T  C  F  S  T  S  V  L  K  K  R  F  L  P  R  H  C  L  T  T  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86301" stop="86032"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSFNAWIAFWPPGVSRPPIRTLSGLKRSSIAVPSARNSGFERIWKLIPLLLWVKIFSIASAVFTGTVDFSTTILSDFETSAIIRAALSQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86562" stop="86308"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRFRISFWKQDPPKPTLALRNLGPILESLPTAYATCETFAPVASQRADMAFTEEILCAKNALAANFESSADHKLVVMILASGTQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86098" stop="85883"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLNNYFVRFRDIGNHTGCTLPVGKICSLACSKTPSLGRSVDRNKNYISLVHMFLHICAEEEILASALLDHIV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="87357" PGL_stop="86698"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87357" e_stop="86698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87357" e_stop="86698" e_length="660"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87357" stop="86698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87357" stop="86755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATACAAAAGAAACAGAAAACATCTTACATGTGACTCAAGATAGTGACGATGGTGGTCTTATGACTACAATGGATAAAATGGAAACAGAAATTGAAGTGGTAAAAAAAATAGTAAAGAATCCCAGCTGATGATTGTCTGATAACTAATATCTTTAAGACCAAAACAAGTCACTCGAGCAATGTAAGGCTCTTAAGCGACAGCAGGCATGTCCTTAAGCCAGGCATCGAGAGGCTTACCAATTGAGTAGACGATAAACCCAATCTCTCTTAGCTTTTCAGCATTCACAACATTCCTGCCATCAAAAACAAAAGCGGGTTTTTGCATGTTATCATATATCTTCTGGAAATCAAGGGTCTTGAACTCATCCCACTCTGTGAGAATGCAGACAGCATGGGCATCTTTTGTTGCACCGTAGGCATCCATAGTAACACTGACTTGTTGTTTCACGGATGTGGGACTCATTGGTTGGAGGTGAAGGGGATGATCCCAGTCAAACTTCTTCATGGAGAGGTCCCTCTGGATTTGGTCCTCCTGCACCTGAGGATCGTATATGCTCAATTTAGCATTATCCCCCACTAGTCCCTTGCATACATCAATTGCAGGGGTCTCTCGAGTATCGCCAGTGTCCTTCTTGAAAGCAAAACCTAGAATTGCAACT</gDNA_template>
            <first_frame> Q  Y  K  R  N  R  K  H  L  T  C  D  S  R  *  *  R  W  W  S  Y  D  Y  N  G  *  N  G  N  R  N  *  S  G  K  K  N  S  K  E  S  Q  L  M  I  V  *  *  L  I  S  L  R  P  K  Q  V  T  R  A  M  *  G  S  *  A  T  A  G  M  S  L  S  Q  A  S  R  G  L  P  I  E  *  T  I  N  P  I  S  L  S  F  S  A  F  T  T  F  L  P  S  K  T  K  A  G  F  C  M  L  S  Y  I  F  W  K  S  R  V  L  N  S  S  H  S  V  R  M  Q  T  A  W  A  S  F  V  A  P  *  A  S  I  V  T  L  T  C  C  F  T  D  V  G  L  I  G  W  R  *  R  G  *  S  Q  S  N  F  F  M  E  R  S  L  W  I  W  S  S  C  T  *  G  S  Y  M  L  N  L  A  L  S  P  T  S  P  L  H  T  S  I  A  G  V  S  R  V  S  P  V  S  F  L  K  A  K  P  R  I  A  T </first_frame>
            <second_frame>  N  T  K  E  T  E  N  I  L  H  V  T  Q  D  S  D  D  G  G  L  M  T  T  M  D  K  M  E  T  E  I  E  V  V  K  K  I  V  K  N  P  S  *  *  L  S  D  N  *  Y  L  *  D  Q  N  K  S  L  E  Q  C  K  A  L  K  R  Q  Q  A  C  P  *  A  R  H  R  E  A  Y  Q  L  S  R  R  *  T  Q  S  L  L  A  F  Q  H  S  Q  H  S  C  H  Q  K  Q  K  R  V  F  A  C  Y  H  I  S  S  G  N  Q  G  S  *  T  H  P  T  L  *  E  C  R  Q  H  G  H  L  L  L  H  R  R  H  P  *  *  H  *  L  V  V  S  R  M  W  D  S  L  V  G  G  E  G  D  D  P  S  Q  T  S  S  W  R  G  P  S  G  F  G  P  P  A  P  E  D  R  I  C  S  I  *  H  Y  P  P  L  V  P  C  I  H  Q  L  Q  G  S  L  E  Y  R  Q  C  P  S  *  K  Q  N  L  E  L  Q   </second_frame>
            <third_frame>   I  Q  K  K  Q  K  T  S  Y  M  *  L  K  I  V  T  M  V  V  L  *  L  Q  W  I  K  W  K  Q  K  L  K  W  *  K  K  *  *  R  I  P  A  D  D  C  L  I  T  N  I  F  K  T  K  T  S  H  S  S  N  V  R  L  L  S  D  S  R  H  V  L  K  P  G  I  E  R  L  T  N  *  V  D  D  K  P  N  L  S  *  L  F  S  I  H  N  I  P  A  I  K  N  K  S  G  F  L  H  V  I  I  Y  L  L  E  I  K  G  L  E  L  I  P  L  C  E  N  A  D  S  M  G  I  F  C  C  T  V  G  I  H  S  N  T  D  L  L  F  H  G  C  G  T  H  W  L  E  V  K  G  M  I  P  V  K  L  L  H  G  E  V  P  L  D  L  V  L  L  H  L  R  I  V  Y  A  Q  F  S  I  I  P  H  *  S  L  A  Y  I  N  C  R  G  L  S  S  I  A  S  V  L  L  E  S  K  T  *  N  C  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87085" stop="86777"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFSIHNIPAIKNKSGFLHVIIYLLEIKGLELIPLCENADSMGIFCCTVGIHSNTDLLFHGCGTHWLEVKGMIPVKLLHGEVPLDLVLLHLRIVYAQFSIIPH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="91253" PGL_stop="92006"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91253" e_stop="91815"/>
            <exon e_start="91907" e_stop="92006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91253" e_stop="91815" e_length="563"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="91816" i_stop="91906" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91907" e_stop="92006" e_length="100"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91253" stop="91815"/>
              <exon start="91907" stop="92006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91254" stop="91815"/>
              <exon start="91907" stop="91924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301983" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCACCATCTGTTACTGCTACTCTTGTCACCCCACCCCCTCATCATACCCTCCACCCCTAAATCCACACTCTACTCCCCCTTATACCCACTACCCCTCTCCACAGCCTCATTTCTGTACTTCCCATCTGGTCCCACCACCACCATCGCCGCCGCCTTCTCATATCCAATGCCAATGTGAAACCGTTCACCAAAATCATCATCATTTTCAAGAATTGAATCATCAAGCCAACAAAGTAACAGACCAACAAACCCAACGAATTGTTACATCTCTTCTCCGTCGGATCGCTGCCTTAGAATCTTCTCTCAGCCGGAGCTCCTCTACTTCTTCTGTTTCTTCTCGTTCTCGTCAAACGTTACGCGATGCTGCAGCGCGTACTATTCAGACCCATTTCAGAGCCTTCCTTGCTCGTAGATCGAGAACACTTCGACAGCTGAAGCAGTTGGCTTCCATCAAAACAACTCTCTATGTTCTCAAATCGTCAGTTTCTGGTAAAATACACATTGATATTCGAGCTGTTACTCGCAGAGCGACGGATTTACTCGTTAGACTTGATTGTATTGAG : GGCGATGATCCGTTAATCAGAGATGGTAGAAGGTCAATAAGCAACGAACTGACTCGATTTATGAAGGTGATTAATGGGGTTTCCATATTCTCAAGTAGAG</gDNA_template>
            <first_frame> P  P  S  V  T  A  T  L  V  T  P  P  P  H  H  T  L  H  P  *  I  H  T  L  L  P  L  I  P  T  T  P  L  H  S  L  I  S  V  L  P  I  W  S  H  H  H  H  R  R  R  L  L  I  S  N  A  N  V  K  P  F  T  K  I  I  I  I  F  K  N  *  I  I  K  P  T  K  *  Q  T  N  K  P  N  E  L  L  H  L  F  S  V  G  S  L  P  *  N  L  L  S  A  G  A  P  L  L  L  L  F  L  L  V  L  V  K  R  Y  A  M  L  Q  R  V  L  F  R  P  I  S  E  P  S  L  L  V  D  R  E  H  F  D  S  *  S  S  W  L  P  S  K  Q  L  S  M  F  S  N  R  Q  F  L  V  K  Y  T  L  I  F  E  L  L  L  A  E  R  R  I  Y  S  L  D  L  I  V  L  R :   A  M  I  R  *  S  E  M  V  E  G  Q  *  A  T  N  *  L  D  L  *  R  *  L  M  G  F  P  Y  S  Q  V  E </first_frame>
            <second_frame>  H  H  L  L  L  L  L  L  S  P  H  P  L  I  I  P  S  T  P  K  S  T  L  Y  S  P  L  Y  P  L  P  L  S  T  A  S  F  L  Y  F  P  S  G  P  T  T  T  I  A  A  A  F  S  Y  P  M  P  M  *  N  R  S  P  K  S  S  S  F  S  R  I  E  S  S  S  Q  Q  S  N  R  P  T  N  P  T  N  C  Y  I  S  S  P  S  D  R  C  L  R  I  F  S  Q  P  E  L  L  Y  F  F  C  F  F  S  F  S  S  N  V  T  R  C  C  S  A  Y  Y  S  D  P  F  Q  S  L  P  C  S  *  I  E  N  T  S  T  A  E  A  V  G  F  H  Q  N  N  S  L  C  S  Q  I  V  S  F  W  *  N  T  H  *  Y  S  S  C  Y  S  Q  S  D  G  F  T  R  *  T  *  L  Y  *   : G  R  *  S  V  N  Q  R  W  *  K  V  N  K  Q  R  T  D  S  I  Y  E  G  D  *  W  G  F  H  I  L  K  *   </second_frame>
            <third_frame>   T  I  C  Y  C  Y  S  C  H  P  T  P  S  S  Y  P  P  P  L  N  P  H  S  T  P  P  Y  T  H  Y  P  S  P  Q  P  H  F  C  T  S  H  L  V  P  P  P  P  S  P  P  P  S  H  I  Q  C  Q  C  E  T  V  H  Q  N  H  H  H  F  Q  E  L  N  H  Q  A  N  K  V  T  D  Q  Q  T  Q  R  I  V  T  S  L  L  R  R  I  A  A  L  E  S  S  L  S  R  S  S  S  T  S  S  V  S  S  R  S  R  Q  T  L  R  D  A  A  A  R  T  I  Q  T  H  F  R  A  F  L  A  R  R  S  R  T  L  R  Q  L  K  Q  L  A  S  I  K  T  T  L  Y  V  L  K  S  S  V  S  G  K  I  H  I  D  I  R  A  V  T  R  R  A  T  D  L  L  V  R  L  D  C  I  E  :  G  D  D  P  L  I  R  D  G  R  R  S  I  S  N  E  L  T  R  F  M  K  V  I  N  G  V  S  I  F  S  S  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91255" stop="91815"/>
                    <exon start="91907" stop="92005"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TICYCYSCHPTPSSYPPPLNPHSTPPYTHYPSPQPHFCTSHLVPPPPSPPPSHIQCQCETVHQNHHHFQELNHQANKVTDQQTQRIVTSLLRRIAALESSLSRSSSTSSVSSRSRQTLRDAAARTIQTHFRAFLARRSRTLRQLKQLASIKTTLYVLKSSVSGKIHIDIRAVTRRATDLLVRLDCIEGDDPLIRDGRRSISNELTRFMKVINGVSIFSSR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="92341" PGL_stop="92992"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92341" e_stop="92992"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="92341" e_stop="92992" e_length="652"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92341" stop="92992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543167" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGAAACTTTTGATACTGAGAAAGAGCTGATAAAAAACCTTAGCAAAAGAGTTGAAAAGCTTGGCATGGCATCCAAGGGGTGTGAAGGTGATGGGGAAGAAGATGGAGGGTATAGTGGAAGTAGTGATAATGAAATGGATCCAAATTACATTTCAAGAAAGGATGGGTATTATGAAAGGAATGTGAGAGATGAGAATGATAATGAGCACGAAAATGAGAGTTCCGTGTTCTCAGCACCAATGCCTGTGAAGATGGAAGCTAGAGCTGCTGATTATATCAACAGGAAAAAGGGTGTCAAAATAGTGGACAATTGAATAGGTTCCCAACAAGATCAAGATTTGAACTTTGCTCTCCTACAGGTCCTGTTGAGCATTAACAATTAGGTGGAAGTTAGGCTTCTGCCGTTATTTCGAATTGTTTGTAATTGTTAGTAATGATTGTCTAGATGAGTATTGTTAAGTTTGATAGGGAGAGTTCACCTGTTTTGAAGTACTAAATTTAGATGTTTTCTTCTGTCATTGTGGTTATGGATGGGAGATCTTTTGGGTGTAATGGACCCTTATTCAGTGGTCTTAAATGAATGATTGTTGAAGAGTTGAAAGATGTCTGTCACATTTTATTCAACATAAATTAACAGGTGGCTATTTCTT</gDNA_template>
            <first_frame> A  R  N  F  *  Y  *  E  R  A  D  K  K  P  *  Q  K  S  *  K  A  W  H  G  I  Q  G  V  *  R  *  W  G  R  R  W  R  V  *  W  K  *  *  *  *  N  G  S  K  L  H  F  K  K  G  W  V  L  *  K  E  C  E  R  *  E  *  *  *  A  R  K  *  E  F  R  V  L  S  T  N  A  C  E  D  G  S  *  S  C  *  L  Y  Q  Q  E  K  G  C  Q  N  S  G  Q  L  N  R  F  P  T  R  S  R  F  E  L  C  S  P  T  G  P  V  E  H  *  Q  L  G  G  S  *  A  S  A  V  I  S  N  C  L  *  L  L  V  M  I  V  *  M  S  I  V  K  F  D  R  E  S  S  P  V  L  K  Y  *  I  *  M  F  S  S  V  I  V  V  M  D  G  R  S  F  G  C  N  G  P  L  F  S  G  L  K  *  M  I  V  E  E  L  K  D  V  C  H  I  L  F  N  I  N  *  Q  V  A  I  S  </first_frame>
            <second_frame>  Q  E  T  F  D  T  E  K  E  L  I  K  N  L  S  K  R  V  E  K  L  G  M  A  S  K  G  C  E  G  D  G  E  E  D  G  G  Y  S  G  S  S  D  N  E  M  D  P  N  Y  I  S  R  K  D  G  Y  Y  E  R  N  V  R  D  E  N  D  N  E  H  E  N  E  S  S  V  F  S  A  P  M  P  V  K  M  E  A  R  A  A  D  Y  I  N  R  K  K  G  V  K  I  V  D  N  *  I  G  S  Q  Q  D  Q  D  L  N  F  A  L  L  Q  V  L  L  S  I  N  N  *  V  E  V  R  L  L  P  L  F  R  I  V  C  N  C  *  *  *  L  S  R  *  V  L  L  S  L  I  G  R  V  H  L  F  *  S  T  K  F  R  C  F  L  L  S  L  W  L  W  M  G  D  L  L  G  V  M  D  P  Y  S  V  V  L  N  E  *  L  L  K  S  *  K  M  S  V  T  F  Y  S  T  *  I  N  R  W  L  F  L </second_frame>
            <third_frame>   K  K  L  L  I  L  R  K  S  *  *  K  T  L  A  K  E  L  K  S  L  A  W  H  P  R  G  V  K  V  M  G  K  K  M  E  G  I  V  E  V  V  I  M  K  W  I  Q  I  T  F  Q  E  R  M  G  I  M  K  G  M  *  E  M  R  M  I  M  S  T  K  M  R  V  P  C  S  Q  H  Q  C  L  *  R  W  K  L  E  L  L  I  I  S  T  G  K  R  V  S  K  *  W  T  I  E  *  V  P  N  K  I  K  I  *  T  L  L  S  Y  R  S  C  *  A  L  T  I  R  W  K  L  G  F  C  R  Y  F  E  L  F  V  I  V  S  N  D  C  L  D  E  Y  C  *  V  *  *  G  E  F  T  C  F  E  V  L  N  L  D  V  F  F  C  H  C  G  Y  G  W  E  I  F  W  V  *  W  T  L  I  Q  W  S  *  M  N  D  C  *  R  V  E  R  C  L  S  H  F  I  Q  H  K  L  T  G  G  Y  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92342" stop="92656"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QETFDTEKELIKNLSKRVEKLGMASKGCEGDGEEDGGYSGSSDNEMDPNYISRKDGYYERNVRDENDNEHENESSVFSAPMPVKMEARAADYINRKKGVKIVDN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="106268" PGL_stop="108360"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106268" e_stop="106303"/>
            <exon e_start="107290" e_stop="107345"/>
            <exon e_start="107469" e_stop="107624"/>
            <exon e_start="107827" e_stop="108360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.889"/>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.889">
            <gDNA_exon_boundary e_start="106268" e_stop="106303" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="106304" i_stop="107289" i_length="986"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107290" e_stop="107345" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="107346" i_stop="107468" i_length="123"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107469" e_stop="107624" e_length="156"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.980">
            <gDNA_intron_boundary i_start="107625" i_stop="107826" i_length="202"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="107827" e_stop="108360" e_length="534"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106268" stop="106303"/>
              <exon start="107290" stop="107345"/>
              <exon start="107469" stop="107624"/>
              <exon start="107827" stop="108360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705750" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACCCTTGAAGGTGTCAACAAGTGCTCTTCCATTG : ATTGTTTAGGTAGACGATTAGGACCATCACTTTTAGGACGAACTGATGATACAGGG : AAGCTGGTCAAGGATTTTGTTAAGATCCTCAATCAAGTGAACACTGAAGAAGTGCCTGATGGCCTGAAGCTCCCAGAGTCCTTTAGTCAACTTGTTGCTGAAATGAAAAACAACAAGTACAGTGCAAAAGAATTTGCTTTGGTTTTAAAGGGAATG : ATGGAGAAATCTGAAAGAGAGATTAGGGAATCAAAGTTTGCAGAGCTGACAAATAAACACTTTGCTGCAAGTGCAATTCCCAAAGGCATTCATTGTCTTTCGCTGCGGTTGACTGATGAGTACTCCACAAATGCTCATGCACGCAGACAGTTGCCTTCACCAGAGCTACTCCCTCTGCTATCTGACAATTCATTGCAACACTTTGTAGTGGCCACTGACAACATCCTGGCTGCCTCAGTTGTGGTCAATTCTGCTGTGCAGTCAACTCTGAAGCCTGAAAAGATTGTTTTCCATGTCATCACCGACAAGAAAACGTATGCAGGCATGCACTCATGGTTTGCTCTGAATCCTGTCACTCCAGCTCTTGTGGAGGTTAAAGGTGTTCATCAGTTTGACTGGTTGACTAGAGAAAATGTTCCCGTGCTTGAAGCAGTCGAGAGCCATAATGTTATTCGTAAATACTACCATGGAAATCATGTTACAGGTGCCAATCTCAGTGATACAACTCCGCGATCTTTTGCATCAAAGTTGCAG</gDNA_template>
            <first_frame> L  P  L  K  V  S  T  S  A  L  P  L  :  I  V  *  V  D  D  *  D  H  H  F  *  D  E  L  M  I  Q  G :   S  W  S  R  I  L  L  R  S  S  I  K  *  T  L  K  K  C  L  M  A  *  S  S  Q  S  P  L  V  N  L  L  L  K  *  K  T  T  S  T  V  Q  K  N  L  L  W  F  *  R  E  * :   W  R  N  L  K  E  R  L  G  N  Q  S  L  Q  S  *  Q  I  N  T  L  L  Q  V  Q  F  P  K  A  F  I  V  F  R  C  G  *  L  M  S  T  P  Q  M  L  M  H  A  D  S  C  L  H  Q  S  Y  S  L  C  Y  L  T  I  H  C  N  T  L  *  W  P  L  T  T  S  W  L  P  Q  L  W  S  I  L  L  C  S  Q  L  *  S  L  K  R  L  F  S  M  S  S  P  T  R  K  R  M  Q  A  C  T  H  G  L  L  *  I  L  S  L  Q  L  L  W  R  L  K  V  F  I  S  L  T  G  *  L  E  K  M  F  P  C  L  K  Q  S  R  A  I  M  L  F  V  N  T  T  M  E  I  M  L  Q  V  P  I  S  V  I  Q  L  R  D  L  L  H  Q  S  C   </first_frame>
            <second_frame>  Y  P  *  R  C  Q  Q  V  L  F  H  * :   L  F  R  *  T  I  R  T  I  T  F  R  T  N  *  *  Y  R   : E  A  G  Q  G  F  C  *  D  P  Q  S  S  E  H  *  R  S  A  *  W  P  E  A  P  R  V  L  *  S  T  C  C  *  N  E  K  Q  Q  V  Q  C  K  R  I  C  F  G  F  K  G  N   : D  G  E  I  *  K  R  D  *  G  I  K  V  C  R  A  D  K  *  T  L  C  C  K  C  N  S  Q  R  H  S  L  S  F  A  A  V  D  *  *  V  L  H  K  C  S  C  T  Q  T  V  A  F  T  R  A  T  P  S  A  I  *  Q  F  I  A  T  L  C  S  G  H  *  Q  H  P  G  C  L  S  C  G  Q  F  C  C  A  V  N  S  E  A  *  K  D  C  F  P  C  H  H  R  Q  E  N  V  C  R  H  A  L  M  V  C  S  E  S  C  H  S  S  S  C  G  G  *  R  C  S  S  V  *  L  V  D  *  R  K  C  S  R  A  *  S  S  R  E  P  *  C  Y  S  *  I  L  P  W  K  S  C  Y  R  C  Q  S  Q  *  Y  N  S  A  I  F  C  I  K  V  A  </second_frame>
            <third_frame>   T  L  E  G  V  N  K  C  S  S  I   : D  C  L  G  R  R  L  G  P  S  L  L  G  R  T  D  D  T  G  :  K  L  V  K  D  F  V  K  I  L  N  Q  V  N  T  E  E  V  P  D  G  L  K  L  P  E  S  F  S  Q  L  V  A  E  M  K  N  N  K  Y  S  A  K  E  F  A  L  V  L  K  G  M  :  M  E  K  S  E  R  E  I  R  E  S  K  F  A  E  L  T  N  K  H  F  A  A  S  A  I  P  K  G  I  H  C  L  S  L  R  L  T  D  E  Y  S  T  N  A  H  A  R  R  Q  L  P  S  P  E  L  L  P  L  L  S  D  N  S  L  Q  H  F  V  V  A  T  D  N  I  L  A  A  S  V  V  V  N  S  A  V  Q  S  T  L  K  P  E  K  I  V  F  H  V  I  T  D  K  K  T  Y  A  G  M  H  S  W  F  A  L  N  P  V  T  P  A  L  V  E  V  K  G  V  H  Q  F  D  W  L  T  R  E  N  V  P  V  L  E  A  V  E  S  H  N  V  I  R  K  Y  Y  H  G  N  H  V  T  G  A  N  L  S  D  T  T  P  R  S  F  A  S  K  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106270" stop="106303"/>
                    <exon start="107290" stop="107345"/>
                    <exon start="107469" stop="107624"/>
                    <exon start="107827" stop="108360"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLEGVNKCSSIDCLGRRLGPSLLGRTDDTGKLVKDFVKILNQVNTEEVPDGLKLPESFSQLVAEMKNNKYSAKEFALVLKGMMEKSEREIRESKFAELTNKHFAASAIPKGIHCLSLRLTDEYSTNAHARRQLPSPELLPLLSDNSLQHFVVATDNILAASVVVNSAVQSTLKPEKIVFHVITDKKTYAGMHSWFALNPVTPALVEVKGVHQFDWLTRENVPVLEAVESHNVIRKYYHGNHVTGANLSDTTPRSFASKLQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="110231" PGL_stop="110922"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110231" e_stop="110922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110231" e_stop="110922" e_length="692"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110231" stop="110922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110231" stop="110918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110231" stop="110894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110231" stop="110893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110231" stop="110887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110231" stop="110857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110232" stop="110919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110232" stop="110861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110253" stop="110864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550145" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCCAGTTTTTGCTTTTTATTAACGTGATTTTTGTTGTCTTGATG</gDNA_template>
            <first_frame> *  A  S  P  S  F  L  D  Q  V  R  *  Q  L  Q  *  F  Y  Q  *  L  P  H  T  G  V  V  Y  R  F  S  I  K  E  K  T  Q  E  N  F  G  S  P  Q  A  L  Q  T  F  Y  W  F  *  G  S  S  T  T  P  I  D  E  K  E  I  L  T  I  A  R  I  C  S  G  F  H  I  *  Y  F  K  R  E  A  W  A  *  D  S  F  F  Q  Y  V  K  *  K  L  V  T  *  F  Y  *  L  D  K  G  Q  Y  F  W  P  L  I  L  S  I  I  L  *  L  K  R  Q  *  *  C  I  P  G  N  A  H  H  C  H  H  Q  S  Y  K  L  V  N  L  R  E  E  K  L  G  A  A  P  C  *  L  Q  R  S  F  F  L  V  N  F  V  V  I  T  S  F  N  H  I  R  L  L  *  A  M  K  L  A  S  H  S  W  I  N  P  *  I  I  T  F  A  T  C  F  V  *  F  N  D  M  C  R  F  I  F  T  K  N  F  S  S  F  C  F  L  L  T  *  F  L  L  S  *   </first_frame>
            <second_frame>  E  H  L  R  P  F  W  T  K  F  V  N  S  S  N  D  F  I  S  N  C  H  I  L  E  *  S  T  D  F  P  S  R  K  K  H  R  R  I  L  E  A  H  R  L  C  K  L  F  I  G  S  R  E  V  Q  Q  L  P  L  M  R  R  R  F  *  Q  L  P  G  Y  V  Q  V  S  T  F  D  T  L  K  E  K  H  G  H  K  I  H  S  F  N  M  *  N  R  S  W  S  H  N  S  I  D  W  T  K  D  N  I  F  G  L  L  Y  S  L  L  Y  Y  S  L  R  G  N  D  S  A  S  Q  E  M  L  I  I  A  I  I  S  H  T  N  W  *  I  C  E  K  K  S  *  A  L  R  P  V  S  C  R  D  H  F  S  L  L  I  L  L  S  L  L  H  S  I  I  L  D  C  C  R  L  *  N  L  H  H  I  V  G  *  T  R  R  L  L  H  L  L  L  V  L  Y  D  S  M  I  C  A  D  S  F  L  P  K  I  S  P  V  F  A  F  Y  *  R  D  F  C  C  L  D  </second_frame>
            <third_frame>   S  I  S  V  L  F  G  P  S  S  L  T  A  P  M  I  L  S  V  I  A  T  Y  W  S  S  L  Q  I  F  H  Q  G  K  N  T  G  E  F  W  K  P  T  G  F  A  N  F  L  L  V  L  G  K  F  N  N  S  H  *  *  E  G  D  S  D  N  C  P  D  M  F  R  F  P  H  L  I  L  *  K  R  S  M  G  I  R  F  I  L  S  I  C  K  I  E  V  G  H  I  I  L  L  I  G  Q  R  T  I  F  L  A  S  Y  T  L  Y  Y  T  I  A  *  E  A  M  I  V  H  P  R  K  C  S  S  L  P  S  S  V  I  Q  I  G  E  F  A  R  R  K  A  R  R  C  A  L  L  A  A  E  I  I  F  P  C  *  F  C  C  H  Y  F  I  Q  S  Y  *  T  V  V  G  Y  E  T  C  I  T  *  L  D  K  P  V  D  Y  Y  I  C  Y  L  F  C  M  I  Q  *  Y  V  Q  I  H  F  Y  Q  K  F  L  Q  F  L  L  F  I  N  V  I  F  V  V  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0025E22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="112131" PGL_stop="115098"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112131" e_stop="112281"/>
            <exon e_start="112608" e_stop="112913"/>
            <exon e_start="114270" e_stop="114434"/>
            <exon e_start="114592" e_stop="114682"/>
            <exon e_start="114755" e_stop="115098"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.948" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.722" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.831" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112131" e_stop="112281" e_length="151"/>
          </exon>
          <intron i_serial="1" don_prob="0.948" acc_prob="0.997">
            <gDNA_intron_boundary i_start="112282" i_stop="112607" i_length="326"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112608" e_stop="112913" e_length="306"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.989">
            <gDNA_intron_boundary i_start="112914" i_stop="114269" i_length="1356"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="114270" e_stop="114434" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.722">
            <gDNA_intron_boundary i_start="114435" i_stop="114591" i_length="157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114592" e_stop="114682" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.916" acc_prob="0.831">
            <gDNA_intron_boundary i_start="114683" i_stop="114754" i_length="72"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="114755" e_stop="115098" e_length="344"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112131" stop="112281"/>
              <exon start="112608" stop="112913"/>
              <exon start="114270" stop="114289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112132" stop="112281"/>
              <exon start="112608" stop="112913"/>
              <exon start="114270" stop="114337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112132" stop="112281"/>
              <exon start="112608" stop="112913"/>
              <exon start="114270" stop="114311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112132" stop="112281"/>
              <exon start="112608" stop="112787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112166" stop="112281"/>
              <exon start="112608" stop="112913"/>
              <exon start="114270" stop="114434"/>
              <exon start="114592" stop="114682"/>
              <exon start="114755" stop="114832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112214" stop="112281"/>
              <exon start="112608" stop="112811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112227" stop="112281"/>
              <exon start="112608" stop="112913"/>
              <exon start="114270" stop="114341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112827" stop="112913"/>
              <exon start="114270" stop="114434"/>
              <exon start="114592" stop="114682"/>
              <exon start="114755" stop="115029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112880" stop="112913"/>
              <exon start="114270" stop="114434"/>
              <exon start="114592" stop="114682"/>
              <exon start="114755" stop="114920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112881" stop="112913"/>
              <exon start="114270" stop="114434"/>
              <exon start="114592" stop="114682"/>
              <exon start="114755" stop="115098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114270" stop="114434"/>
              <exon start="114592" stop="114682"/>
              <exon start="114755" stop="115098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369848" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATTGTTAATGCATTACACGTATTACCTACCCTTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACA : ATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAG : AGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAG : AGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAG : ATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCTTCCTTGTATTCTCAAGATCGTGTATGGTCTGGTCTCGTCATTTTCTTTTGTATTTGCTGCTTTCTTTTTTAGTGCTTGATGGATTCAAAGTCCATTCTGCATTGATTGAAAATTTGTGTTGCTGTCAAGTATACCATTTCTTTTCTGTAGGACTCTGTTGTCTGTACAAAATACGAATGAACTCGTTGGCTGAATTCATAATTTAATCTTGAATATCTTCTTATGGTGATCAATGTATAATATATAGATACAAAAAATTGTCACAC</gDNA_template>
            <first_frame> F  Y  C  *  C  I  T  R  I  T  Y  P  F  L  F  F  F  P  I  L  V  L  *  L  Y  L  S  *  G  I  S  Y  V  I  T  L  F  G  K  Q  W  T  V  S  R  S  V  S  L  N   : N  L  R  L  G  F  G  N  L  M  R  S  I  K  C  Q  E  P  K  T  K  F  F  G  L  G  S  F  S  D  C  V  N  *  G  *  T  G  Y  R  K  I  L  V  K  D  P  C  V  G  F  V  L  *  V  R  T  R  M  S  A  A  Q  D  Q  L  E  I  K  F  R  L  I  D  G  T  D  I  G  P  K  S  F  S  A  A  T  S  V  A  T  L  K  E  N  I  L  A  Q  W  P  R   : E  K  D  N  G  P  R  T  V  K  D  V  K  L  I  S  A  G  R  I  L  E  N  N  R  T  V  A  E  C  R  S  P  L  C  D  I  P  G  G  V  T  T  M  H  V  V  V  Q  P  P  A  Q  E  K   : E  K  K  A  S  D  D  M  K  Q  N  K  C  L  C  V  I  L  *  Y  S  V  P  T  G  G  W  L  Y  A  R :   *  R  L  V  V  V  V  N  N  T  E  V  D  E  V  V  T  N  K  H  E  L  L  A  F  L  P  C  I  L  K  I  V  Y  G  L  V  S  S  F  S  F  V  F  A  A  F  F  F  S  A  *  W  I  Q  S  P  F  C  I  D  *  K  F  V  L  L  S  S  I  P  F  L  F  C  R  T  L  L  S  V  Q  N  T  N  E  L  V  G  *  I  H  N  L  I  L  N  I  F  L  W  *  S  M  Y  N  I  *  I  Q  K  I  V  T  </first_frame>
            <second_frame>  F  I  V  N  A  L  H  V  L  P  T  L  S  F  S  S  S  L  Y  *  F  C  S  S  I  C  L  E  E  Y  H  M  *  L  L  C  S  V  N  S  G  Q  F  P  D  Q  F  L  L  T  :  I  *  G  W  D  L  G  I  *  *  D  P  *  S  V  K  N  Q  R  L  N  S  L  V  L  G  A  S  V  I  V  L  I  K  A  E  Q  V  T  G  R  S  *  *  K  I  L  V  L  G  L  F  C  K  L  E  Q  G  C  L  Q  L  K  I  N  W  R  L  S  L  D  *  L  M  E  Q  I  L  G  P  R  V  F  L  R  L  Q  A  *  Q  P  *  R  R  T  S  L  L  S  G  P  E  :  R  R  I  M  V  R  G  Q  *  K  M  L  S  *  S  A  L  E  E  Y  W  K  T  T  E  Q  W  L  N  A  E  A  R  Y  V  I  F  P  E  E  S  R  P  C  M  W  L  F  N  H  Q  L  R  R  K  :  R  K  K  R  Q  M  T  *  S  R  I  S  A  S  A  L  Y  Y  D  I  Q  F  Q  Q  G  D  G  Y  M  Q   : D  K  D  W  W  W  L  L  T  I  L  K  L  M  K  *  *  Q  T  N  M  S  C  W  H  S  F  L  V  F  S  R  S  C  M  V  W  S  R  H  F  L  L  Y  L  L  L  S  F  L  V  L  D  G  F  K  V  H  S  A  L  I  E  N  L  C  C  C  Q  V  Y  H  F  F  S  V  G  L  C  C  L  Y  K  I  R  M  N  S  L  A  E  F  I  I  *  S  *  I  S  S  Y  G  D  Q  C  I  I  Y  R  Y  K  K  L  S  H </second_frame>
            <third_frame>   L  L  L  M  H  Y  T  Y  Y  L  P  F  P  F  L  L  P  Y  T  S  F  V  A  L  S  V  L  R  N  I  I  C  N  Y  F  V  R  *  T  V  D  S  F  Q  I  S  F  S  *  Q :   F  K  A  G  I  W  E  F  D  E  I  H  K  V  S  R  T  K  D  *  I  L  W  S  W  E  L  Q  *  L  C  *  L  R  L  N  R  L  Q  E  D  P  S  K  R  S  L  C  W  V  C  F  V  S  *  N  K  D  V  C  S  S  R  S  T  G  D  *  V  *  I  D  *  W  N  R  Y  W  A  Q  E  F  F  C  G  Y  K  R  S  N  L  K  G  E  H  P  C  S  V  A  Q  R :   E  G  *  W  S  A  D  S  K  R  C  *  V  N  Q  R  W  K  N  I  G  K  Q  Q  N  S  G  *  M  Q  K  P  A  M  *  Y  S  R  R  S  H  D  H  A  C  G  C  S  T  T  S  S  G  E  R :   E  K  S  V  R  *  H  E  A  E  *  V  P  L  R  Y  T  M  I  F  S  S  N  R  G  M  A  I  C  K  :  I  K  T  G  G  G  C  *  Q  Y  *  S  *  *  S  S  N  K  Q  T  *  V  V  G  I  P  S  L  Y  S  Q  D  R  V  W  S  G  L  V  I  F  F  C  I  C  C  F  L  F  *  C  L  M  D  S  K  S  I  L  H  *  L  K  I  C  V  A  V  K  Y  T  I  S  F  L  *  D  S  V  V  C  T  K  Y  E  *  T  R  W  L  N  S  *  F  N  L  E  Y  L  L  M  V  I  N  V  *  Y  I  D  T  K  N  C  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112769" stop="112913"/>
                    <exon start="114270" stop="114434"/>
                    <exon start="114592" stop="114647"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRTRMSAAQDQLEIKFRLIDGTDIGPKSFSAATSVATLKENILAQWPREKDNGPRTVKDVKLISAGRILENNRTVAECRSPLCDIPGGVTTMHVVVQPPAQEKEKKASDDMKQNKCLCVIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114805" stop="115038"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTNMSCWHSFLVFSRSCMVWSRHFLLYLLLSFLVLDGFKVHSALIENLCCCQVYHFFSVGLCCLYKIRMNSLAEFII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="112356" e_stop="112913"/>
            <exon e_start="114270" e_stop="114434"/>
            <exon e_start="114592" e_stop="114682"/>
            <exon e_start="114755" e_stop="115098"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.989" e_score="0.993"/>
          <exon-intron don_prob="0.984" acc_prob="0.722" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.831" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="112356" e_stop="112913" e_length="558"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.989">
            <gDNA_intron_boundary i_start="112914" i_stop="114269" i_length="1356"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114270" e_stop="114434" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.722">
            <gDNA_intron_boundary i_start="114435" i_stop="114591" i_length="157"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="114592" e_stop="114682" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.916" acc_prob="0.831">
            <gDNA_intron_boundary i_start="114683" i_stop="114754" i_length="72"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="114755" e_stop="115098" e_length="344"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112356" stop="112913"/>
              <exon start="114270" stop="114434"/>
              <exon start="114592" stop="114680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112827" stop="112913"/>
              <exon start="114270" stop="114434"/>
              <exon start="114592" stop="114682"/>
              <exon start="114755" stop="115029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112880" stop="112913"/>
              <exon start="114270" stop="114434"/>
              <exon start="114592" stop="114682"/>
              <exon start="114755" stop="114920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112881" stop="112913"/>
              <exon start="114270" stop="114434"/>
              <exon start="114592" stop="114682"/>
              <exon start="114755" stop="115098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114270" stop="114434"/>
              <exon start="114592" stop="114682"/>
              <exon start="114755" stop="115098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369848" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTCTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAG : AGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAG : AGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAG : ATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCTTCCTTGTATTCTCAAGATCGTGTATGGTCTGGTCTCGTCATTTTCTTTTGTATTTGCTGCTTTCTTTTTTAGTGCTTGATGGATTCAAAGTCCATTCTGCATTGATTGAAAATTTGTGTTGCTGTCAAGTATACCATTTCTTTTCTGTAGGACTCTGTTGTCTGTACAAAATACGAATGAACTCGTTGGCTGAATTCATAATTTAATCTTGAATATCTTCTTATGGTGATCAATGTATAATATATAGATACAAAAAATTGTCACAC</gDNA_template>
            <first_frame> L  S  A  V  *  V  L  I  L  M  F  S  *  L  W  V  V  K  I  C  D  F  L  V  N  F  N  S  R  F  L  N  F  F  L  L  G  C  L  N  C  S  L  T  I  F  S  *  *  S  N  L  I  Q  E  S  V  I  I  Y  L  I  L  C  G  F  M  Y  I  L  S  V  L  I  L  *  I  H  I  L  F  F  M  K  I  *  G  W  D  L  G  I  *  *  D  P  *  S  V  K  N  Q  R  L  N  S  L  V  L  G  A  S  V  I  V  L  I  K  A  E  Q  V  T  G  R  S  *  *  K  I  L  V  L  G  L  F  C  K  L  E  Q  G  C  L  Q  L  K  I  N  W  R  L  S  L  D  *  L  M  E  Q  I  L  G  P  R  V  F  L  R  L  Q  A  *  Q  P  *  R  R  T  S  L  L  S  G  P  E  :  R  R  I  M  V  R  G  Q  *  K  M  L  S  *  S  A  L  E  E  Y  W  K  T  T  E  Q  W  L  N  A  E  A  R  Y  V  I  F  P  E  E  S  R  P  C  M  W  L  F  N  H  Q  L  R  R  K  :  R  K  K  R  Q  M  T  *  S  R  I  S  A  S  A  L  Y  Y  D  I  Q  F  Q  Q  G  D  G  Y  M  Q   : D  K  D  W  W  W  L  L  T  I  L  K  L  M  K  *  *  Q  T  N  M  S  C  W  H  S  F  L  V  F  S  R  S  C  M  V  W  S  R  H  F  L  L  Y  L  L  L  S  F  L  V  L  D  G  F  K  V  H  S  A  L  I  E  N  L  C  C  C  Q  V  Y  H  F  F  S  V  G  L  C  C  L  Y  K  I  R  M  N  S  L  A  E  F  I  I  *  S  *  I  S  S  Y  G  D  Q  C  I  I  Y  R  Y  K  K  L  S  H </first_frame>
            <second_frame>  C  L  Q  F  E  Y  L  F  *  C  F  L  D  F  G  L  L  K  F  V  I  S  W  L  I  L  T  Q  D  S  *  I  S  F  F  W  V  V  *  I  V  V  *  L  S  F  L  D  N  L  I  *  F  K  K  V  *  L  F  T  *  F  C  V  G  L  C  I  F  C  R  C  *  Y  Y  E  F  I  F  C  F  L  *  R  F  K  A  G  I  W  E  F  D  E  I  H  K  V  S  R  T  K  D  *  I  L  W  S  W  E  L  Q  *  L  C  *  L  R  L  N  R  L  Q  E  D  P  S  K  R  S  L  C  W  V  C  F  V  S  *  N  K  D  V  C  S  S  R  S  T  G  D  *  V  *  I  D  *  W  N  R  Y  W  A  Q  E  F  F  C  G  Y  K  R  S  N  L  K  G  E  H  P  C  S  V  A  Q  R :   E  G  *  W  S  A  D  S  K  R  C  *  V  N  Q  R  W  K  N  I  G  K  Q  Q  N  S  G  *  M  Q  K  P  A  M  *  Y  S  R  R  S  H  D  H  A  C  G  C  S  T  T  S  S  G  E  R :   E  K  S  V  R  *  H  E  A  E  *  V  P  L  R  Y  T  M  I  F  S  S  N  R  G  M  A  I  C  K  :  I  K  T  G  G  G  C  *  Q  Y  *  S  *  *  S  S  N  K  Q  T  *  V  V  G  I  P  S  L  Y  S  Q  D  R  V  W  S  G  L  V  I  F  F  C  I  C  C  F  L  F  *  C  L  M  D  S  K  S  I  L  H  *  L  K  I  C  V  A  V  K  Y  T  I  S  F  L  *  D  S  V  V  C  T  K  Y  E  *  T  R  W  L  N  S  *  F  N  L  E  Y  L  L  M  V  I  N  V  *  Y  I  D  T  K  N  C  H   </second_frame>
            <third_frame>   V  C  S  L  S  T  Y  F  N  V  F  L  T  L  G  C  *  N  L  *  F  L  G  *  F  *  L  K  I  L  E  F  L  S  F  G  L  F  K  L  *  F  D  Y  L  F  L  I  I  *  S  N  S  R  K  C  N  Y  L  P  D  F  V  W  V  Y  V  Y  F  V  G  V  N  I  M  N  S  Y  F  V  F  Y  E  D  L  R  L  G  F  G  N  L  M  R  S  I  K  C  Q  E  P  K  T  K  F  F  G  L  G  S  F  S  D  C  V  N  *  G  *  T  G  Y  R  K  I  L  V  K  D  P  C  V  G  F  V  L  *  V  R  T  R  M  S  A  A  Q  D  Q  L  E  I  K  F  R  L  I  D  G  T  D  I  G  P  K  S  F  S  A  A  T  S  V  A  T  L  K  E  N  I  L  A  Q  W  P  R   : E  K  D  N  G  P  R  T  V  K  D  V  K  L  I  S  A  G  R  I  L  E  N  N  R  T  V  A  E  C  R  S  P  L  C  D  I  P  G  G  V  T  T  M  H  V  V  V  Q  P  P  A  Q  E  K   : E  K  K  A  S  D  D  M  K  Q  N  K  C  L  C  V  I  L  *  Y  S  V  P  T  G  G  W  L  Y  A  R :   *  R  L  V  V  V  V  N  N  T  E  V  D  E  V  V  T  N  K  H  E  L  L  A  F  L  P  C  I  L  K  I  V  Y  G  L  V  S  S  F  S  F  V  F  A  A  F  F  F  S  A  *  W  I  Q  S  P  F  C  I  D  *  K  F  V  L  L  S  S  I  P  F  L  F  C  R  T  L  L  S  V  Q  N  T  N  E  L  V  G  *  I  H  N  L  I  L  N  I  F  L  W  *  S  M  Y  N  I  *  I  Q  K  I  V  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112769" stop="112913"/>
                    <exon start="114270" stop="114434"/>
                    <exon start="114592" stop="114647"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRTRMSAAQDQLEIKFRLIDGTDIGPKSFSAATSVATLKENILAQWPREKDNGPRTVKDVKLISAGRILENNRTVAECRSPLCDIPGGVTTMHVVVQPPAQEKEKKASDDMKQNKCLCVIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114805" stop="115038"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTNMSCWHSFLVFSRSCMVWSRHFLLYLLLSFLVLDGFKVHSALIENLCCCQVYHFFSVGLCCLYKIRMNSLAEFII*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112508" stop="112708"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNSRKCNYLPDFVWVYVYFVGVNIMNSYFVFYEDLRLGFGNLMRSIKCQEPKTKFFGLGSFSDCVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="115770" PGL_stop="119403"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115770" e_stop="116123"/>
            <exon e_start="116808" e_stop="117026"/>
            <exon e_start="118335" e_stop="118572"/>
            <exon e_start="118880" e_stop="119075"/>
            <exon e_start="119248" e_stop="119302"/>
            <exon e_start="119391" e_stop="119403"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.386" acc_prob="0.989" e_score="0.982"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="115770" e_stop="116123" e_length="354"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="116124" i_stop="116807" i_length="684"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116808" e_stop="117026" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="117027" i_stop="118334" i_length="1308"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="118335" e_stop="118572" e_length="238"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="118573" i_stop="118879" i_length="307"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="118880" e_stop="119075" e_length="196"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="119076" i_stop="119247" i_length="172"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="119248" e_stop="119302" e_length="55"/>
          </exon>
          <intron i_serial="5" don_prob="0.386" acc_prob="0.989">
            <gDNA_intron_boundary i_start="119303" i_stop="119390" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="119391" e_stop="119403" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115770" stop="116123"/>
              <exon start="116808" stop="116904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115770" stop="116071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115793" stop="116123"/>
              <exon start="116808" stop="117026"/>
              <exon start="118335" stop="118572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115794" stop="116123"/>
              <exon start="116808" stop="116941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115794" stop="116123"/>
              <exon start="116808" stop="116856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115798" stop="116123"/>
              <exon start="116808" stop="117026"/>
              <exon start="118335" stop="118572"/>
              <exon start="118880" stop="118932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115798" stop="116123"/>
              <exon start="116808" stop="117026"/>
              <exon start="118335" stop="118572"/>
              <exon start="118880" stop="118930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115803" stop="116123"/>
              <exon start="116808" stop="117026"/>
              <exon start="118335" stop="118572"/>
              <exon start="118880" stop="118937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115804" stop="116123"/>
              <exon start="116808" stop="116957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115817" stop="116123"/>
              <exon start="116808" stop="117026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115839" stop="116123"/>
              <exon start="116808" stop="117026"/>
              <exon start="118335" stop="118511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116039" stop="116123"/>
              <exon start="116808" stop="117026"/>
              <exon start="118335" stop="118572"/>
              <exon start="118880" stop="119075"/>
              <exon start="119248" stop="119294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116067" stop="116123"/>
              <exon start="116808" stop="117026"/>
              <exon start="118335" stop="118572"/>
              <exon start="118880" stop="119075"/>
              <exon start="119248" stop="119302"/>
              <exon start="119391" stop="119403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116815" stop="116983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358768" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTTTTCCGGCAAAACACTCTCTCCTATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG : ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAG : GTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAG : ATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCTATGGCTAGAGCGGGGAAGCTTGACCCAGTTATAGGAAGAGATGATGAGATACGTAGATGCATACAAATCCTCTCAAGGAGAACAAAGAATAACCCAGTGTTAATTGGTGAGCCTGGAGTTGGGAAAACTGCAATCTCTGAAGG : GCTTGCTCAGAGAATTGTGCAAGGAGATGTACCTCAGGCTTTGATGAATCGAAGG : TTGATATCTCTTG</gDNA_template>
            <first_frame> K  L  F  R  Q  N  T  L  S  Y  P  L  K  L  C  R  F  S  S  F  F  N  N  V  E  I  T  E  *  Y  I  W  F  T  G  M  S  T  V  T  S  F  S  G  V  Q  F  C  V  P  S  S  S  S  N  S  S  N  R  V  A  L  F  S  S  H  S  A  P  Y  L  N  F  S  G  K  S  R  V  L  G  K  C  S  S  L  K  L  K  R  K  D  V  F  F  S  R  K  T  E  K  L  S  Q  G  S  R  L  T  V  R  C  D  A  S  N  G  R  :  I  T  Q  Q  D  F  T  E  M  A  W  Q  A  I  V  A  S  P  E  I  A  K  E  N  K  H  Q  I  V  E  T  E  H  L  M  K  A  L  L  E  Q  K  N  G  L  A  R  R  I  F  S  K  T  G  V  D  N  T  R  L  L  E  A  T  D  K  F  I  R  Q  Q  P  K  :  V  I  G  E  T  A  G  S  M  L  G  R  E  L  E  G  L  M  Q  R  A  R  E  Y  K  K  E  Y  G  D  S  F  V  S  V  E  H  L  V  L  G  F  I  Q  D  K  R  F  G  K  Q  L  F  N  D  F  Q  I  S  L  K  T  L  K  T  A  I  E  S  I  R  G  R  Q  N  V  I  D  Q   : D  P  E  G  K  Y  E  S  L  E  K  Y  G  K  D  L  T  A  M  A  R  A  G  K  L  D  P  V  I  G  R  D  D  E  I  R  R  C  I  Q  I  L  S  R  R  T  K  N  N  P  V  L  I  G  E  P  G  V  G  K  T  A  I  S  E  G :   L  A  Q  R  I  V  Q  G  D  V  P  Q  A  L  M  N  R  R  :  L  I  S  L  </first_frame>
            <second_frame>  N  F  S  G  K  T  L  S  P  I  R  *  N  F  V  V  F  L  P  S  S  I  T  L  R  *  Q  N  S  T  F  G  S  P  V  C  L  P  *  R  H  F  P  A  Y  S  F  A  F  L  L  L  L  P  I  L  Q  T  E  L  L  Y  F  H  P  I  Q  R  R  T  *  T  S  Q  A  N  R  E  F  L  A  S  V  V  R  *  N  *  R  G  R  M  C  S  S  V  G  K  L  R  N  F  L  R  A  Q  G  L  P  Y  V  V  M  L  Q  M  E  G :   S  L  S  K  I  L  Q  K  W  H  G  K  Q  L  L  H  R  Q  K  *  L  K  R  T  S  I  K  *  *  R  L  S  T  *  *  R  H  C  W  S  K  R  M  G  W  L  V  A  Y  S  P  R  R  V  *  I  I  P  A  F  *  R  L  L  I  S  L  L  D  N  N  Q  R :   L  L  V  R  Q  Q  V  L  C  *  A  E  S  W  K  V  *  C  R  E  P  G  S  T  R  K  S  M  V  I  P  L  C  Q  L  S  I  W  C  L  A  S  F  K  I  N  D  L  G  S  N  C  L  M  I  S  R  F  P  *  R  H  *  K  L  P  L  N  P  *  G  D  A  K  M  L  L  I  K  :  I  L  K  G  S  M  N  H  *  K  N  M  E  K  T  *  L  L  W  L  E  R  G  S  L  T  Q  L  *  E  E  M  M  R  Y  V  D  A  Y  K  S  S  Q  G  E  Q  R  I  T  Q  C  *  L  V  S  L  E  L  G  K  L  Q  S  L  K   : G  L  L  R  E  L  C  K  E  M  Y  L  R  L  *  *  I  E  G :   *  Y  L  L </second_frame>
            <third_frame>   T  F  P  A  K  H  S  L  L  S  A  E  T  L  S  F  F  F  L  L  Q  *  R  *  D  N  R  I  V  H  L  V  H  R  Y  V  Y  R  D  V  I  F  R  R  T  V  L  R  S  F  F  F  F  Q  F  F  K  Q  S  C  F  I  F  I  P  F  S  A  V  P  E  L  L  R  Q  I  A  S  S  W  Q  V  *  F  V  E  T  E  E  E  G  C  V  L  Q  *  E  N  *  E  T  F  S  G  L  K  A  Y  R  T  L  *  C  F  K  W  K   : D  H  S  A  R  F  Y  R  N  G  M  A  S  N  C  C  I  A  R  N  S  *  R  E  Q  A  S  N  S  R  D  *  A  L  D  E  G  T  V  G  A  K  E  W  A  G  S  S  H  I  L  Q  D  G  C  R  *  Y  P  P  F  R  G  Y  *  *  V  Y  *  T  T  T  K   : G  Y  W  *  D  S  R  F  Y  V  R  P  R  V  G  R  S  D  A  E  S  Q  G  V  Q  E  R  V  W  *  F  L  C  V  S  *  A  F  G  A  W  L  H  S  R  *  T  I  W  E  A  T  V  *  *  F  P  D  F  P  E  D  T  E  N  C  H  *  I  H  K  G  T  P  K  C  Y  *  S  R :   S  *  R  E  V  *  I  T  R  K  I  W  K  R  P  D  C  Y  G  *  S  G  E  A  *  P  S  Y  R  K  R  *  *  D  T  *  M  H  T  N  P  L  K  E  N  K  E  *  P  S  V  N  W  *  A  W  S  W  E  N  C  N  L  *  R  :  A  C  S  E  N  C  A  R  R  C  T  S  G  F  D  E  S  K   : V  D  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0025E22.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115857" stop="116123"/>
                    <exon start="116808" stop="117026"/>
                    <exon start="118335" stop="118572"/>
                    <exon start="118880" stop="119075"/>
                    <exon start="119248" stop="119302"/>
                    <exon start="119391" stop="119402"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIWFTGMSTVTSFSGVQFCVPSSSSNSSNRVALFSSHSAPYLNFSGKSRVLGKCSSLKLKRKDVFFSRKTEKLSQGSRLTVRCDASNGRITQQDFTEMAWQAIVASPEIAKENKHQIVETEHLMKALLEQKNGLARRIFSKTGVDNTRLLEATDKFIRQQPKVIGETAGSMLGRELEGLMQRAREYKKEYGDSFVSVEHLVLGFIQDKRFGKQLFNDFQISLKTLKTAIESIRGRQNVIDQDPEGKYESLEKYGKDLTAMARAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRRLISL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 207 chains have been computed
$ 
$ memory statistics:
$ 673120 bytes spliced alignments in total
$ 158 spliced alignments have been stored
$ 4260 bytes was the average size of a spliced alignment
$ 31000 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1631 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 222 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:23:13
-->
