<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:19:09"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415458" ref_strand="-" ref_description="SGN-E415458 [STM-21-I10]">
      <seq>gcagcgcaacacatagccagtgcaaggcttatcttagtgcaatcattgtgtacctatatgcccacgactttaagcaagcggagaagtgctacaatgattgttgtcaggttgaagttttcctaaatagtgatcaaggtcgctgtgctggtaaacttctttctgcatatgctgatggcgatgttgaggatattaaacgggtgtcacaatcaagcactgtatcaaatcttgatcacacgatcatcaagattgcaaggaaattgcctacaggggatgttagtgcactcaagaatgaagccatgaaagacaatgaagatcctttggatgaggatgacctgacctaaactttcactagttgatggtatgagtcgaagcttcatgtgtgctgagtttatgtctggaacatcgagtcttgcttttactatctatcctgctagatttgtcaactatatcatgacaaattgtctgaggaaaaccctgtacagaagaatctcacaaaccctccctccgttgattgctttgcagattggaagcgtttgttcatgaatataatttattattgggcaatcttagcagtgtggttctgtactgtgtttatgtgaattaatagaacttattctggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="987" stop="4367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1292" g_stop="1371" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="106" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1372" i_stop="2808" i_length="1437">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2809" g_stop="2938" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="236" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2939" i_stop="3705" i_length="767">
            <donor d_prob="0.419" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3706" g_stop="4066" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="597" r_length="361" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="620" polyA_stop="630"/>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E415458" ref_strand="-">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415458" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1292" e_stop="1371"/>
          <exon e_start="2809" e_stop="2938"/>
          <exon e_start="3706" e_stop="4066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTATCTTAGTGCAATCATTGTTTACCTATATGCCCACGACTTTAAGCAAGCGGAGAAGTGCTACAATGATTGTTGTCAGTAAGTTACTTACGCATTCATGACTTTAAGCTACAAGAATTTTTGTCCGTGTAATGTTGTTTTTTACTTTTTCATCGCCAAAGTTGGAAGTTGAGAGCTAATGGAGTCCATTTCAGAAACGTTATGCGTCAAATTTGGTTTAGTTTATTTTCAGTTTTGCTACACCTAAATGTCTACCTTTTTATCAATATATATGCATTTTAAACCACTTCTCTGCTGTGTTATCAGTCCCGTTAAATCTATTACAGTTTCTAGTGCAATACTATCTTTATCTTGTGAAGCTCACTGTTTAGCATCCTCCTTTTCGTTTGCACATCTTTCTTTATGGTGCTTGGGGGTTTAGGAATATGTCTTACATGGTAAAAACATTTTACCTTGTTAGAAGAAAAGATGTATTGCATCTGGAAAACCCAGAGAATGGGCAGTTCCAAAGTGTTCTTTGACTTTTCCAACAAAGTGATCCAAGGATGAGACGTACAATGATGTGATTTATGTTTTTACTGTCTCAATGCATTTCCTCCACTTCCCTTTGACGAGCAATTTCTTCAACCTTGTTTAACCTGGTTACTTGAATCCACTTGCTTATCATGAAGTCTAAGAGTGCCAGATCCTATACTGCAATCACCTGGGTTAGTCAAACTTGGTGATTTTTTTGGTAAGAGATTAGTCGATAACTAGGCATCTCTGGATTTTAATATACTCATCATTTCCCTAGAATCTCAGTGTCCGTCTGCTTAGATACTCTTTAGCTTGTATTTCTCTTATTGGACGTCACATTCATTCATGCTTTCAAATCATCCCCCCCATCTTCCACATGCATGGTTAAGGTAAATGATGTTTTTGTTGTGTCAAAGCACGAGTTTTATTGAAAATGACTGGTGGGTTAGTACCAAGAGGTTAGTTTACTCCTAGTTAATATAAAATTTCTTTCAATACCTAAATAAATGTGCTTGCTGTAAATTTTTGTTCCCTGGTTCAAAATTCTTTCCCTTTATTATAGAGCGGTAAATTTATGCCCTTTAATCTAATTGTACAAGTTCCCTCCTCTATTCTTGCTGTAAGGCTTTAGAAAATCACACAATTAGTATGTGAGTCACGATTAAGTGGGAAGAATTACTTGTTAGAATATCAACTAAGACAATGATAGCTGAGACAGAAATGTGGACCTCCAGAAACTTGCTTTAGTCTAACATCCTTCTATTTTGGTCTAAAATATCCTCTTATTTTTATTTTATCTGGTAGGTATCTATGCACACCCTTCCTATTCAGCTTTTCGTGTTTATCTTTCTCAGACTTATGAATCTATATGGACAATTTATATTTCAAGATCATATTTTCTTCTGGAATTGATAATTTCTCTCATATTTTTAGTTTACTCATGATTTTATCAGGTTAAGTGATTTTACTAAAAACACGGGTGATGGCTCTTCTTTGTAGGGTTGAAGTTTTCCTGAATAGCGATCAAGGTCGCTGTGCTGGTAAACTTCTTTCTGCATATGCTGACGGCGATGTTGAGGATATTAAACGGGTGTCACAATCAAGCACTGTTTCAAATCTTGATCACACGGTTAGTGATGCAGTATCAGAGTTTTAAGTCAAGATGATGAGTGCTAATTACTGTTGTGTGCTTACTAATTTTGCATTGCTGACTGCTGAGAGCAGCTCTTTTTTGAAAATAAAGCTCGGTATTTAAGCGGAGAAGGGTAGAGGGGCGGGCCCATTATCCACCGAGTTTAAAAGACTGTGATTGGTCCAAAGGGCCGATCACAAACGAATTTCTCGGTTATAAAAAAAATGTATAAAATTTCAATTATTTGGTTGGGTTTGGCGCTTAGGCTTGTATAGCATTTTCTTTATTTAAAATAGGTGGCCAGTTATAGGTTCTCAGCTTTTTGGTAAAAATGATCACCAAGCTTATATTTAAACTAGACTAGAGATTCCTTAATCATGGTTTTCTAGCTATAAGATTTTTCGAGCACCTTTTCAGCTAAATCAATCGTCCCGACACAATGTAACTTGTATATTCCCCTGATATTTATTCTCCCAAGGCTGTTTACTCAAATACTATTTTCCCTGCTTGCTTTAGAACTGCTTCCCAGAAGTGAAAGAGTCATTCATCTCAACTTATTTTTACGCCGAACTTTTTATCTTGTTAAGTCTGCATAGCTGTTTCATTTTCAATGCTTAGCATAACACTGAGCATGATTAGTTAATTTTCACTTGGACGATAATGTAAGGAAATTAAGATGAGCAAGCAAGAAGCATCATTTGTGTGACGTCTATGTGCCTTCTCTTTTCTCCCTTGCTGTATTAACATAATTGCAATAAATCCAGATCGTCAAGATTGCAAGGAAATTGCCTACAGGGGATGTTAGCGCACTCAAGAATGAAGCCATGAAAGACAATGAAGATCCTTTGGATGAGGATGATCTGACCTAAACTTTCACTAGTTGATGGAATGAGTCGAAGCTTTATGTGTGCTGAGTTTGTGTCTGGAACATCGAGTCTTGCTTTTACAATCTATCTTGCTAGATTTATCAGCTATATCATGACAAATTGTCTGAGGAAAACCCTGTACAGAAGAATCTCACAAACCCTCCCTCCGTTGATTGCTTTGCAGATTGGAAGCTTTTGTTCATGAATATAATTGATTATTGGGTAATCTTAGCAGTGTGGTTCTGTACTGTGTTTATCT</genome_strand>
        <mrna_strand>GCTTATCTTAGTGCAATCATTGTGTACCTATATGCCCACGACTTTAAGCAAGCGGAGAAGTGCTACAATGATTGTTGTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGAAGTTTTCCTAAATAGTGATCAAGGTCGCTGTGCTGGTAAACTTCTTTCTGCATATGCTGATGGCGATGTTGAGGATATTAAACGGGTGTCACAATCAAGCACTGTATCAAATCTTGATCACACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCAAGATTGCAAGGAAATTGCCTACAGGGGATGTTAGTGCACTCAAGAATGAAGCCATGAAAGACAATGAAGATCCTTTGGATGAGGATGACCTGACCTAAACTTTCACTAGTTGATGGTATGAGTCGAAGCTTCATGTGTGCTGAGTTTATGTCTGGAACATCGAGTCTTGCTTTTACTATCTATCCTGCTAGATTTGTCAACTATATCATGACAAATTGTCTGAGGAAAACCCTGTACAGAAGAATCTCACAAACCCTCCCTCCGTTGATTGCTTTGCAGATTGGAAGCGTTTGTTCATGAATATAATTTATTATTGGGCAATCTTAGCAGTGTGGTTCTGTACTGTGTTTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E416692" ref_strand="-" ref_description="SGN-E416692 [STM-23-O22]">
      <seq>aatgattgttgtcaggttgaagttttcctaaatagtgatcaaggtcgctgtgctggtaaacttctttctgcatatgctgatggcgatgttgaggatattaaacgggtgtcacaatcaagcactgtatcaaatcttgatcacacgatcatcaagattgcaaggaaattgcctacaggggatgttagtgcactcaagaatgaagccatgaaagccaatgaagatcctttggatgaggatgacctgacctaaactttcactagttgatggtatgagtcgaagcttcatgtgtgctgagtttatgtctggaacatcgagtcttgcttttactatctatcctgctagatttgtcaactatatcatgacaaattgtctgaggaaaaccctgtacagaagaatctcacaaaccctccctccgttgattgctttgcagattggaagcgtttgttcatgaatataatttatattgggcaaaaaaaaaaaaaaaaaagaagn</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="2503" stop="14806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2809" g_stop="2938" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="144" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2939" i_stop="3705" i_length="767">
            <donor d_prob="0.419" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3706" g_stop="4041" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="478" r_length="334" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4042" i_stop="4276" i_length="235">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.737" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4277" g_stop="4290" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="492" r_length="14" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E416692" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416692" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2809" e_stop="2938"/>
          <exon e_start="3706" e_stop="4041"/>
          <exon e_start="4277" e_stop="4290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGAAGTTTTCCTGAATAGCGATCAAGGTCGCTGTGCTGGTAAACTTCTTTCTGCATATGCTGACGGCGATGTTGAGGATATTAAACGGGTGTCACAATCAAGCACTGTTTCAAATCTTGATCACACGGTTAGTGATGCAGTATCAGAGTTTTAAGTCAAGATGATGAGTGCTAATTACTGTTGTGTGCTTACTAATTTTGCATTGCTGACTGCTGAGAGCAGCTCTTTTTTGAAAATAAAGCTCGGTATTTAAGCGGAGAAGGGTAGAGGGGCGGGCCCATTATCCACCGAGTTTAAAAGACTGTGATTGGTCCAAAGGGCCGATCACAAACGAATTTCTCGGTTATAAAAAAAATGTATAAAATTTCAATTATTTGGTTGGGTTTGGCGCTTAGGCTTGTATAGCATTTTCTTTATTTAAAATAGGTGGCCAGTTATAGGTTCTCAGCTTTTTGGTAAAAATGATCACCAAGCTTATATTTAAACTAGACTAGAGATTCCTTAATCATGGTTTTCTAGCTATAAGATTTTTCGAGCACCTTTTCAGCTAAATCAATCGTCCCGACACAATGTAACTTGTATATTCCCCTGATATTTATTCTCCCAAGGCTGTTTACTCAAATACTATTTTCCCTGCTTGCTTTAGAACTGCTTCCCAGAAGTGAAAGAGTCATTCATCTCAACTTATTTTTACGCCGAACTTTTTATCTTGTTAAGTCTGCATAGCTGTTTCATTTTCAATGCTTAGCATAACACTGAGCATGATTAGTTAATTTTCACTTGGACGATAATGTAAGGAAATTAAGATGAGCAAGCAAGAAGCATCATTTGTGTGACGTCTATGTGCCTTCTCTTTTCTCCCTTGCTGTATTAACATAATTGCAATAAATCCAGATCGTCAAGATTGCAAGGAAATTGCCTACAGGGGATGTTAGCGCACTCAAGAATGAAGCCATGAAAGACAATGAAGATCCTTTGGATGAGGATGATCTGACCTAAACTTTCACTAGTTGATGGAATGAGTCGAAGCTTTATGTGTGCTGAGTTTGTGTCTGGAACATCGAGTCTTGCTTTTACAATCTATCTTGCTAGATTTATCAGCTATATCATGACAAATTGTCTGAGGAAAACCCTGTACAGAAGAATCTCACAAACCCTCCCTCCGTTGATTGCTTTGCAGATTGGAAGCTTTTGTTCATGAATATAATTGATTATTGGGTAATCTTAGCAGTGTGGTTCTGTACTGTGTTTATCTGCTCCTATTGTTCCTCCAGCACTGACCATAAAGATGGTGTAAAATGTGTTTGTCCATCTACTACTTGAAAATGCATGTGTTTTTTGTCCATTACAAGTGAGCCACTACTCTAATTTGATAGTTGTAAAGGAACAAAACTAGGACATGATTGCTTGATCAACCAAACCAAAACTTAGCAATATCTTTATTTGGAAGCCTTGGTATATGCAGAAAAATCAAGAACC</genome_strand>
        <mrna_strand>GGTTGAAGTTTTCCTAAATAGTGATCAAGGTCGCTGTGCTGGTAAACTTCTTTCTGCATATGCTGATGGCGATGTTGAGGATATTAAACGGGTGTCACAATCAAGCACTGTATCAAATCTTGATCACACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCAAGATTGCAAGGAAATTGCCTACAGGGGATGTTAGTGCACTCAAGAATGAAGCCATGAAAGCCAATGAAGATCCTTTGGATGAGGATGACCTGACCTAAACTTTCACTAGTTGATGGTATGAGTCGAAGCTTCATGTGTGCTGAGTTTATGTCTGGAACATCGAGTCTTGCTTTTACTATCTATCCTGCTAGATTTGTCAACTATATCATGACAAATTGTCTGAGGAAAACCCTGTACAGAAGAATCTCACAAACCCTCCCTCCGTTGATTGCTTTGCAGATTGGAAGCGTTTGTTCATGAATATAATTTA-TATTGGGCAA-AAAAAAA...........................................................................................................................................................................................................................................AAAAAAAAAGAAGN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418902" ref_strand="-" ref_description="SGN-E418902 [STM-28-H1]">
      <seq>aggggatgttagcgcactcaagaatgaagccatgaaagacaatgaagatcctttggatgaggatgatctgacctaaactttcactagttgatggaatgagtcgaagctttatgtgtgctgagtttgtgtctggaacatcgagtcttgcttttacaatctatcttgctagatttatcagctatatcatgacaaattgtctgaggaaaaccctgtacagaagaatctcacaaaccctccctccgttgattgctttgcagattggaagcttttgttcatgaatataattgattattgggtaatcttagcagtgtggttctgtactgtgtttatctgctcctattgttcctccagcactgaccataaagatggtgtaaaatgtgtttgtccatctactacttgaaaatgcatgtgtttttttccaaaaaaaaaagaaaaaaaaaaactcgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="3435" stop="4462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3735" g_stop="4151" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="442"/>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E418902" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418902" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3735" e_stop="4151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGATGTTAGCGCACTCAAGAATGAAGCCATGAAAGACAATGAAGATCCTTTGGATGAGGATGATCTGACCTAAACTTTCACTAGTTGATGGAATGAGTCGAAGCTTTATGTGTGCTGAGTTTGTGTCTGGAACATCGAGTCTTGCTTTTACAATCTATCTTGCTAGATTTATCAGCTATATCATGACAAATTGTCTGAGGAAAACCCTGTACAGAAGAATCTCACAAACCCTCCCTCCGTTGATTGCTTTGCAGATTGGAAGCTTTTGTTCATGAATATAATTGATTATTGGGTAATCTTAGCAGTGTGGTTCTGTACTGTGTTTATCTGCTCCTATTGTTCCTCCAGCACTGACCATAAAGATGGTGTAAAATGTGTTTGTCCATCTACTACTTGAAAATGCATGTGTTTTTT</genome_strand>
        <mrna_strand>AGGGGATGTTAGCGCACTCAAGAATGAAGCCATGAAAGACAATGAAGATCCTTTGGATGAGGATGATCTGACCTAAACTTTCACTAGTTGATGGAATGAGTCGAAGCTTTATGTGTGCTGAGTTTGTGTCTGGAACATCGAGTCTTGCTTTTACAATCTATCTTGCTAGATTTATCAGCTATATCATGACAAATTGTCTGAGGAAAACCCTGTACAGAAGAATCTCACAAACCCTCCCTCCGTTGATTGCTTTGCAGATTGGAAGCTTTTGTTCATGAATATAATTGATTATTGGGTAATCTTAGCAGTGTGGTTCTGTACTGTGTTTATCTGCTCCTATTGTTCCTCCAGCACTGACCATAAAGATGGTGTAAAATGTGTTTGTCCATCTACTACTTGAAAATGCATGTGTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E614248" ref_strand="+" ref_description="SGN-E614248 [64032]">
      <seq>caagaatgaagccatgaaagacaatgaagatcctttggatgaggatgatctgacctaatctttcactagttgatggaatgagtcaagcctcatggtgttgctgagtttatgtctggaaacatcgagtcttgcttttactatctatcctgctagatttgtcaactatatcatgacaaattgtctgaggaaaaccctgtacagaagaatctcacaaaccctccctccgttgattgctttgcagattggaagcgtttgttcatgaatataatttattatattgggcaatcttagcagtgtggttctgtactgtgtttatgtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="3453" stop="4367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3753" g_stop="4066" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4067" i_stop="4195" i_length="129">
            <donor d_prob="0.000" d_score="0.85"/>
            <acceptor a_prob="0.355" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4196" g_stop="4206" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="329" r_length="11" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E614248" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3753" e_stop="4066"/>
          <exon e_start="4196" e_stop="4206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATGAAGCCATGAAAGACAATGAAGATCCTTTGGATGAGGATGATCTGACCTAAACTTTCACTAGTTGATGGAATGAGTCGAAGCTTTAT-GTG-TGCTGAGTTTGTGTCTGG-AACATCGAGTCTTGCTTTTACAATCTATCTTGCTAGATTTATCAGCTATATCATGACAAATTGTCTGAGGAAAACCCTGTACAGAAGAATCTCACAAACCCTCCCTCCGTTGATTGCTTTGCAGATTGGAAGCTTTTGTTCATGAATATAATTGA-T-TATTGGGTAATCTTAGCAGTGTGGTTCTGTACTGTGTTTATCTGCTCCTATTGTTCCTCCAGCACTGACCATAAAGATGGTGTAAAATGTGTTTGTCCATCTACTACTTGAAAATGCATGTGTTTTTTGTCCATTACAAGTGAGCCACTACTCTAATTTGATAGTTGTAAAGGAACAAAACTA</genome_strand>
        <mrna_strand>CAAGAATGAAGCCATGAAAGACAATGAAGATCCTTTGGATGAGGATGATCTGACCTAATCTTTCACTAGTTGATGGAATGAGTC-AAGCCTCATGGTGTTGCTGAGTTTATGTCTGGAAACATCGAGTCTTGCTTTTACTATCTATCCTGCTAGATTTGTCAACTATATCATGACAAATTGTCTGAGGAAAACCCTGTACAGAAGAATCTCACAAACCCTCCCTCCGTTGATTGCTTTGCAGATTGGAAGCGTTTGTTCATGAATATAATTTATTATATTGGGCAATCTTAGCAGTGTGGTTCTGTACTGTGTTTATGT.................................................................................................................................GAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554103" ref_strand="+" ref_description="SGN-E554103 [cTSC-3-D5]">
      <seq>gccctcttatctgtttcaaacagattgaaaactgttaatagcagctgatagtgatgggattgagatgaagcagaaatgagcaacatggctatggctatggctttgccttcttcaacatcaccatttcttttttcttgtactactcaaaagcaagctcataatttcacctcatcaagaaaacccctccatcgctttgttactcgttctactctctctgatgatctcttcctagccgccaaacacactgtggattcatatgtgaagaatggtatggttgttggattaggttcaggtcatgcttctacattggctatacagtatctaggtcagaaactacgagctggtactataaaagatgtcactgccatacccacgagtaatcaggaacactctgatgcagatgtgttagcagtgcaagtgaagcagcaaaggcaggaattcctttggaacagtatgatgacagtttaaagattgatctagcatttgatgaagctgacattatggaagaagaaacacttgctgcaattattggtcgacgaaaactgcagggagatgattctataattaaagagaagactattttagaagcagctgatcaactgatatttattataaaggaaaaacaattcaagggcggtgtagaaaggttcagttccagtactaatcaaatctccttattcactttctcagggtaactggcttgaaacagctgaagaaatagacgaactctttcctccggtgatgcaaaggtttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="16963" stop="19294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17263" g_stop="17509" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17510" i_stop="17691" i_length="182">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17692" g_stop="17819" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="374" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17820" i_stop="18231" i_length="412">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18232" g_stop="18327" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="470" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18328" i_stop="18486" i_length="159">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18487" g_stop="18591" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="575" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18592" i_stop="18742" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18743" g_stop="18838" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="672" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18839" i_stop="18915" i_length="77">
            <donor d_prob="0.911" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18916" g_stop="18989" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="749" r_length="77" r_score="0.865"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18990" i_stop="19106" i_length="117">
            <donor d_prob="0.977" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19107" g_stop="19113" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="756" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E554103" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17263" e_stop="17509"/>
          <exon e_start="17692" e_stop="17819"/>
          <exon e_start="18232" e_stop="18327"/>
          <exon e_start="18487" e_stop="18591"/>
          <exon e_start="18743" e_stop="18838"/>
          <exon e_start="18916" e_stop="18989"/>
          <exon e_start="19107" e_stop="19113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTCTTATCTGTTTCAAAACAGATTGAAAACTGTTAATAGCAGCTGATAGTGATGGGATTGAGATGAAGCAGAAATGAGCAACATGGCTATGGCTATGGCTTTGCCTTCTTCAACATCACCATTTCTTTTTTCTTGTACTACTCAAAAGCAAGCTCATAATTTCACCTCATCAAGAAAACCCCTCCATCGCTTTGTTACTCGTTCTACTCTCTCTGATGATCTCTTCCTAGCCGCCAAACACACTGTAAGACTCTTTCTTCTTTGCCCCTTTTTGGGGTTTTGCTAAAAGATTACAACTTTAAAGCTTTTTGGTTTGGTAAGACACTTTCTCGTTTGCCCTTTTTATGATTTTGCTAAAAAAATTACAGCTTTAAAGTTTTTGGTTTGTGTTTGGGTGTTGAATCTTGTGGAATTGTTGAAATGTAGGTGGATTCATATGTGAAGAATGGTATGGTTGTTGGATTAGGTTCAGGTCATGCTTCTACATTGGCTATACAGTATCTAGGTCAGAAACTACGAGCTGGTACTATAAAAGATGTCACTGCCATACCCACGTAAGTTGAATCTATTGATCCTAATAAATAAGGGAAATATGATACCATCGTAGAATCTGATTTGGGCTTGTATGTGTTCTTTGTTGGTAGTTCATAGTGCAGATTAACTTGTTTGTTGAATAGACACACTCCATGTTATGTTGTTTTACTCGTCGTGTTCCCACTTCAACTATAGGGTGTGTTGAGAAATGATTTTACCTTGGAATTATCAATTTCTGGATTCATTAGATAGATAGTTGACACATGAAACAGTACAACGTGGAGGATTGGGCGCGATGATAATGTATTTCCATAATTTGTTACTTGTTAGTTTGTCCATTAGATCTTTATACAGCTTACATATAAGTATCCTGGTTTTACTGTGATGACTGATGAGAAGCCTTGTTATTGAGTTTGTTTGTTTTTCCATTAGGAGTAATCAGGAACACTCTGATGCAGATGTGTTAGCAGTGCAAGTGAAGCAGCAAAGGCAGGAATTCCTTTGGAACAGTATGATGACAGTTTAAAGGTGCGCACCACTACTACGTAGATTCTTATTTAGAAACTTGCATTAGGACTTATTTAAAAATTTGAGCATTTAGTTACATTTTGGACCTCCATATGCATTCAGATTGCATTCATTGAAGCTGAAATGTTTTGTGCAAACATGTATGTGCTTCTTACATAGATTGATCTAGCATTTGATGAAGCTGACATTATGGAAGAAGAAACACTTGCTGCAATTATTGGTCGACGAAAACTGCAGGGAGATGATTCTATAATTAAAGAGAAGGTCTGTCATATATCATGTGATGTATTTGTATTTCTTATCTTGATTTTGTAACATATTATTGTGTGTTTTTAGCTTGAAATTCCTTTTATCTTTTGTTATCTTCATTATCCACTGACTTCTTATGAGGCTGCATTGTCTAATATGGATGCAGACTATTTTAGAAGCAGCTGATCAACTGATATTTATTATAAAGGAAAAACAATTCAAGGGCGGTGTAG-AAGGTTCAGTTCCAGTACTAATCAAATCTGTAAGCTCCATACTAAATATACTACTGAATGCTGATGAACAAGTGTAGTTCAGAAAGCGAGAAACTATACTCATTTAGCTTATTCAC-TTCTCAGGTTAACTGGCTTGAAACAGCTGAAGAAATAGACGACCTC-TTCCT-CGGTGATGCAGAGGTTAGTCCTAATCATGTATAAAAGTGTGCTCTCTCCTTGCCACACTCCAATATTTGCAAAGGACCAAGATAGGATACATTTCATAATCAGATAGATAACTTTTGTTTTTCTATGCAGGTTTGGA</genome_strand>
        <mrna_strand>GCCCTCTTATCTGTTTC-AAACAGATTGAAAACTGTTAATAGCAGCTGATAGTGATGGGATTGAGATGAAGCAGAAATGAGCAACATGGCTATGGCTATGGCTTTGCCTTCTTCAACATCACCATTTCTTTTTTCTTGTACTACTCAAAAGCAAGCTCATAATTTCACCTCATCAAGAAAACCCCTCCATCGCTTTGTTACTCGTTCTACTCTCTCTGATGATCTCTTCCTAGCCGCCAAACACACT......................................................................................................................................................................................GTGGATTCATATGTGAAGAATGGTATGGTTGTTGGATTAGGTTCAGGTCATGCTTCTACATTGGCTATACAGTATCTAGGTCAGAAACTACGAGCTGGTACTATAAAAGATGTCACTGCCATACCCAC............................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAATCAGGAACACTCTGATGCAGATGTGTTAGCAGTGCAAGTGAAGCAGCAAAGGCAGGAATTCCTTTGGAACAGTATGATGACAGTTTAAAG...............................................................................................................................................................ATTGATCTAGCATTTGATGAAGCTGACATTATGGAAGAAGAAACACTTGCTGCAATTATTGGTCGACGAAAACTGCAGGGAGATGATTCTATAATTAAAGAGAAG.......................................................................................................................................................ACTATTTTAGAAGCAGCTGATCAACTGATATTTATTATAAAGGAAAAACAATTCAAGGGCGGTGTAGAAAGGTTCAGTTCCAGTACTAATCAAATCT.............................................................................CCTTATTCACTTTCTCAGGGTAACTGGCTTGAAACAGCTGAAGAAATAGACGAACTCTTTCCTCCGGTGATGCAAAG.....................................................................................................................GTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366765" ref_strand="+" ref_description="SGN-E366765 [cLPT-6-E7]">
      <seq>tttcaaaacagattgaaaactgttaatagcagctgatagtgatgggattgagatgaagcagaaatgaggaacatggctatgtctatggctttgccttcttcaacatcaccatttcttttttcttctattactcaaaagcaagctcataatttcacctcatcaagaaaacccctccatcgctttgttactcgttctactctctctgatgatctcttcctagccgccaaacacactgtggaatcatatgtgaagagtggtatggttgttggattaggttcaggtcatgcttctacattggctatacagtatctaggtcagaaactacgagctggtactataaaagatgtcactgccatacccacgtaagttgaatgtattgatcctaataaataagggaaatatgataccatcgtagaatctgattttggcttgtatgtgttctttgttggtagttcatactgcagattaacttgtttgttgaatagacacactccatgttatgttgttttactcgtcgtgttcccacttcaactatagggtgtgttgagaaatgattttaccttggaatatcaatttctggattcgttaggtagatagttgacacatgaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="16976" stop="18370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17276" g_stop="17509" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17510" i_stop="17691" i_length="182">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17692" g_stop="18070" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="612" r_length="378" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E366765" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17276" e_stop="17509"/>
          <exon e_start="17692" e_stop="18070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAAACAGATTGAAAACTGTTAATAGCAGCTGATAGTGATGGGATTGAGATGAAGCAGAAATGAGCAACATGGCTATGGCTATGGCTTTGCCTTCTTCAACATCACCATTTCTTTTTTCTTGTACTACTCAAAAGCAAGCTCATAATTTCACCTCATCAAGAAAACCCCTCCATCGCTTTGTTACTCGTTCTACTCTCTCTGATGATCTCTTCCTAGCCGCCAAACACACTGTAAGACTCTTTCTTCTTTGCCCCTTTTTGGGGTTTTGCTAAAAGATTACAACTTTAAAGCTTTTTGGTTTGGTAAGACACTTTCTCGTTTGCCCTTTTTATGATTTTGCTAAAAAAATTACAGCTTTAAAGTTTTTGGTTTGTGTTTGGGTGTTGAATCTTGTGGAATTGTTGAAATGTAGGTGGATTCATATGTGAAGAATGGTATGGTTGTTGGATTAGGTTCAGGTCATGCTTCTACATTGGCTATACAGTATCTAGGTCAGAAACTACGAGCTGGTACTATAAAAGATGTCACTGCCATACCCACGTAAGTTGAATCTATTGATCCTAATAAATAAGGGAAATATGATACCATCGTAGAATCTGATTTGGGCTTGTATGTGTTCTTTGTTGGTAGTTCATAGTGCAGATTAACTTGTTTGTTGAATAGACACACTCCATGTTATGTTGTTTTACTCGTCGTGTTCCCACTTCAACTATAGGGTGTGTTGAGAAATGATTTTACCTTGGAATTATCAATTTCTGGATTCATTAGATAGATAGTTGACACATGAAACA</genome_strand>
        <mrna_strand>TTTCAAAACAGATTGAAAACTGTTAATAGCAGCTGATAGTGATGGGATTGAGATGAAGCAGAAATGAGGAACATGGCTATGTCTATGGCTTTGCCTTCTTCAACATCACCATTTCTTTTTTCTTCTATTACTCAAAAGCAAGCTCATAATTTCACCTCATCAAGAAAACCCCTCCATCGCTTTGTTACTCGTTCTACTCTCTCTGATGATCTCTTCCTAGCCGCCAAACACACT......................................................................................................................................................................................GTGGAATCATATGTGAAGAGTGGTATGGTTGTTGGATTAGGTTCAGGTCATGCTTCTACATTGGCTATACAGTATCTAGGTCAGAAACTACGAGCTGGTACTATAAAAGATGTCACTGCCATACCCACGTAAGTTGAATGTATTGATCCTAATAAATAAGGGAAATATGATACCATCGTAGAATCTGATTTTGGCTTGTATGTGTTCTTTGTTGGTAGTTCATACTGCAGATTAACTTGTTTGTTGAATAGACACACTCCATGTTATGTTGTTTTACTCGTCGTGTTCCCACTTCAACTATAGGGTGTGTTGAGAAATGATTTTACCTTGGAA-TATCAATTTCTGGATTCGTTAGGTAGATAGTTGACACATGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541218" ref_strand="+" ref_description="SGN-E541218 [TUS-61-O8]">
      <seq>ttcaaaacagattgaaaactgttaatagcagctgatagtgatgggattgagatgaagcagaaatgagcaacatggctatggctatggctttgccttcttcaacatcaccatttcttttttcttgtactactcaaaagcaagctcataatttcacctcatcaagaaaacccctccatcgctttgttactcgttctactctctctgatgatctcttcctagccgccaaacacactgtggattcatatgtgaagaatggtatggttgttggattaggttcaggtcatgcttctacattggctatacagtatctaggtcagaaactacgagctggtactataaaagatgtcactgccatacccacatgtgttagcagtgcaagtgaagcagcaaaggcaggaattcctttggaacagtatgatgacagtttaaagattgatctagcatttgatgaagctgacattatggaagaagaaacacttgctgcaattattggtcgacgaaaactgcaggnagatgattctataattaaagagaagactattttagaagcagctgatcaactgatatttattataaaggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="16977" stop="19089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17277" g_stop="17509" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17510" i_stop="17691" i_length="182">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17692" g_stop="17819" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="361" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17820" i_stop="18257" i_length="438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18258" g_stop="18327" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="431" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18328" i_stop="18486" i_length="159">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18487" g_stop="18591" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="536" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18592" i_stop="18742" i_length="151">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18743" g_stop="18789" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="583" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E541218" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17277" e_stop="17509"/>
          <exon e_start="17692" e_stop="17819"/>
          <exon e_start="18258" e_stop="18327"/>
          <exon e_start="18487" e_stop="18591"/>
          <exon e_start="18743" e_stop="18789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAACAGATTGAAAACTGTTAATAGCAGCTGATAGTGATGGGATTGAGATGAAGCAGAAATGAGCAACATGGCTATGGCTATGGCTTTGCCTTCTTCAACATCACCATTTCTTTTTTCTTGTACTACTCAAAAGCAAGCTCATAATTTCACCTCATCAAGAAAACCCCTCCATCGCTTTGTTACTCGTTCTACTCTCTCTGATGATCTCTTCCTAGCCGCCAAACACACTGTAAGACTCTTTCTTCTTTGCCCCTTTTTGGGGTTTTGCTAAAAGATTACAACTTTAAAGCTTTTTGGTTTGGTAAGACACTTTCTCGTTTGCCCTTTTTATGATTTTGCTAAAAAAATTACAGCTTTAAAGTTTTTGGTTTGTGTTTGGGTGTTGAATCTTGTGGAATTGTTGAAATGTAGGTGGATTCATATGTGAAGAATGGTATGGTTGTTGGATTAGGTTCAGGTCATGCTTCTACATTGGCTATACAGTATCTAGGTCAGAAACTACGAGCTGGTACTATAAAAGATGTCACTGCCATACCCACGTAAGTTGAATCTATTGATCCTAATAAATAAGGGAAATATGATACCATCGTAGAATCTGATTTGGGCTTGTATGTGTTCTTTGTTGGTAGTTCATAGTGCAGATTAACTTGTTTGTTGAATAGACACACTCCATGTTATGTTGTTTTACTCGTCGTGTTCCCACTTCAACTATAGGGTGTGTTGAGAAATGATTTTACCTTGGAATTATCAATTTCTGGATTCATTAGATAGATAGTTGACACATGAAACAGTACAACGTGGAGGATTGGGCGCGATGATAATGTATTTCCATAATTTGTTACTTGTTAGTTTGTCCATTAGATCTTTATACAGCTTACATATAAGTATCCTGGTTTTACTGTGATGACTGATGAGAAGCCTTGTTATTGAGTTTGTTTGTTTTTCCATTAGGAGTAATCAGGAACACTCTGATGCAGATGTGTTAGCAGTGCAAGTGAAGCAGCAAAGGCAGGAATTCCTTTGGAACAGTATGATGACAGTTTAAAGGTGCGCACCACTACTACGTAGATTCTTATTTAGAAACTTGCATTAGGACTTATTTAAAAATTTGAGCATTTAGTTACATTTTGGACCTCCATATGCATTCAGATTGCATTCATTGAAGCTGAAATGTTTTGTGCAAACATGTATGTGCTTCTTACATAGATTGATCTAGCATTTGATGAAGCTGACATTATGGAAGAAGAAACACTTGCTGCAATTATTGGTCGACGAAAACTGCAGGGAGATGATTCTATAATTAAAGAGAAGGTCTGTCATATATCATGTGATGTATTTGTATTTCTTATCTTGATTTTGTAACATATTATTGTGTGTTTTTAGCTTGAAATTCCTTTTATCTTTTGTTATCTTCATTATCCACTGACTTCTTATGAGGCTGCATTGTCTAATATGGATGCAGACTATTTTAGAAGCAGCTGATCAACTGATATTTATTATAAAGGAAAA</genome_strand>
        <mrna_strand>TTCAAAACAGATTGAAAACTGTTAATAGCAGCTGATAGTGATGGGATTGAGATGAAGCAGAAATGAGCAACATGGCTATGGCTATGGCTTTGCCTTCTTCAACATCACCATTTCTTTTTTCTTGTACTACTCAAAAGCAAGCTCATAATTTCACCTCATCAAGAAAACCCCTCCATCGCTTTGTTACTCGTTCTACTCTCTCTGATGATCTCTTCCTAGCCGCCAAACACACT......................................................................................................................................................................................GTGGATTCATATGTGAAGAATGGTATGGTTGTTGGATTAGGTTCAGGTCATGCTTCTACATTGGCTATACAGTATCTAGGTCAGAAACTACGAGCTGGTACTATAAAAGATGTCACTGCCATACCCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTTAGCAGTGCAAGTGAAGCAGCAAAGGCAGGAATTCCTTTGGAACAGTATGATGACAGTTTAAAG...............................................................................................................................................................ATTGATCTAGCATTTGATGAAGCTGACATTATGGAAGAAGAAACACTTGCTGCAATTATTGGTCGACGAAAACTGCAGGNAGATGATTCTATAATTAAAGAGAAG.......................................................................................................................................................ACTATTTTAGAAGCAGCTGATCAACTGATATTTATTATAAAGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295551" ref_strand="+" ref_description="SGN-E295551 [cLET-23-L7]">
      <seq>tcaaaacagattgaaaactgttaatagcagctgatagtgatgggattgagatgaagcagaaatgagcaacatggctatggctatggctttgccttcttcaacatcaccatttcttttttcttgtactactcaaaagcaagctcataatttcacctcatcaagaaaacccctccatcgctttgttactcgttctactctctctgatgatctcttcctagccgccaaacacactgtggattcatatgtgaagaatggtatggttgttggattaggttcaggtcatgcttctacattggctatacagtatctaggtcagaaactacgagctggtactataaaagatgtcactgccatacccacatgtgttagcagtgcaagtgaagcagcaaaggcaggaattcctttggaacagtatgatgacagtttaaagattgatctagcatttgatgaagctgacattatggaagaagaaacacttgctgcaattattggtcgacgaaaactgcagggagatgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="16978" stop="18875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17278" g_stop="17509" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17510" i_stop="17691" i_length="182">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17692" g_stop="17819" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="360" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17820" i_stop="18257" i_length="438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18258" g_stop="18327" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="430" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18328" i_stop="18486" i_length="159">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18487" g_stop="18575" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="519" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E295551" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17278" e_stop="17509"/>
          <exon e_start="17692" e_stop="17819"/>
          <exon e_start="18258" e_stop="18327"/>
          <exon e_start="18487" e_stop="18575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACAGATTGAAAACTGTTAATAGCAGCTGATAGTGATGGGATTGAGATGAAGCAGAAATGAGCAACATGGCTATGGCTATGGCTTTGCCTTCTTCAACATCACCATTTCTTTTTTCTTGTACTACTCAAAAGCAAGCTCATAATTTCACCTCATCAAGAAAACCCCTCCATCGCTTTGTTACTCGTTCTACTCTCTCTGATGATCTCTTCCTAGCCGCCAAACACACTGTAAGACTCTTTCTTCTTTGCCCCTTTTTGGGGTTTTGCTAAAAGATTACAACTTTAAAGCTTTTTGGTTTGGTAAGACACTTTCTCGTTTGCCCTTTTTATGATTTTGCTAAAAAAATTACAGCTTTAAAGTTTTTGGTTTGTGTTTGGGTGTTGAATCTTGTGGAATTGTTGAAATGTAGGTGGATTCATATGTGAAGAATGGTATGGTTGTTGGATTAGGTTCAGGTCATGCTTCTACATTGGCTATACAGTATCTAGGTCAGAAACTACGAGCTGGTACTATAAAAGATGTCACTGCCATACCCACGTAAGTTGAATCTATTGATCCTAATAAATAAGGGAAATATGATACCATCGTAGAATCTGATTTGGGCTTGTATGTGTTCTTTGTTGGTAGTTCATAGTGCAGATTAACTTGTTTGTTGAATAGACACACTCCATGTTATGTTGTTTTACTCGTCGTGTTCCCACTTCAACTATAGGGTGTGTTGAGAAATGATTTTACCTTGGAATTATCAATTTCTGGATTCATTAGATAGATAGTTGACACATGAAACAGTACAACGTGGAGGATTGGGCGCGATGATAATGTATTTCCATAATTTGTTACTTGTTAGTTTGTCCATTAGATCTTTATACAGCTTACATATAAGTATCCTGGTTTTACTGTGATGACTGATGAGAAGCCTTGTTATTGAGTTTGTTTGTTTTTCCATTAGGAGTAATCAGGAACACTCTGATGCAGATGTGTTAGCAGTGCAAGTGAAGCAGCAAAGGCAGGAATTCCTTTGGAACAGTATGATGACAGTTTAAAGGTGCGCACCACTACTACGTAGATTCTTATTTAGAAACTTGCATTAGGACTTATTTAAAAATTTGAGCATTTAGTTACATTTTGGACCTCCATATGCATTCAGATTGCATTCATTGAAGCTGAAATGTTTTGTGCAAACATGTATGTGCTTCTTACATAGATTGATCTAGCATTTGATGAAGCTGACATTATGGAAGAAGAAACACTTGCTGCAATTATTGGTCGACGAAAACTGCAGGGAGATGATTC</genome_strand>
        <mrna_strand>TCAAAACAGATTGAAAACTGTTAATAGCAGCTGATAGTGATGGGATTGAGATGAAGCAGAAATGAGCAACATGGCTATGGCTATGGCTTTGCCTTCTTCAACATCACCATTTCTTTTTTCTTGTACTACTCAAAAGCAAGCTCATAATTTCACCTCATCAAGAAAACCCCTCCATCGCTTTGTTACTCGTTCTACTCTCTCTGATGATCTCTTCCTAGCCGCCAAACACACT......................................................................................................................................................................................GTGGATTCATATGTGAAGAATGGTATGGTTGTTGGATTAGGTTCAGGTCATGCTTCTACATTGGCTATACAGTATCTAGGTCAGAAACTACGAGCTGGTACTATAAAAGATGTCACTGCCATACCCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTTAGCAGTGCAAGTGAAGCAGCAAAGGCAGGAATTCCTTTGGAACAGTATGATGACAGTTTAAAG...............................................................................................................................................................ATTGATCTAGCATTTGATGAAGCTGACATTATGGAAGAAGAAACACTTGCTGCAATTATTGGTCGACGAAAACTGCAGGGAGATGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256393" ref_strand="+" ref_description="SGN-E256393 [cLEG-38-I19]">
      <seq>gggattgagatgaagcagaaatgagcaacatggctatggctatggctttgccttcttcaacatcaccatttcttttttcttgtactactcaaaagcaagctcataatttcacctcatcaagaaaacccctccatcgctttgttactcgttctactctctctgatgatctcttcctagccgccaaacacactgtggattcatatgtgaagaatggtatggttgttggattaggttcaggtcatgcttctacattggctatacagtatctaggtcagaaactacgagctggtactataaaagatgtcactgccatacccacgaacactctgatgcagatgtgttagcagtgcaagtgaagcagcaaaggcaggaattcctttggaacagtatgatgacagtttaaagattgatctagcatttgatgaagctgacattatggaagaagaaacacttgctgcaattattggtcgacgaaaactgcacggagatgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="17019" stop="18875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17319" g_stop="17509" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17510" i_stop="17691" i_length="182">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17692" g_stop="17819" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="319" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17820" i_stop="18241" i_length="422">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.330" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18242" g_stop="18327" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="405" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18328" i_stop="18486" i_length="159">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18487" g_stop="18575" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="494" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E256393" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17319" e_stop="17509"/>
          <exon e_start="17692" e_stop="17819"/>
          <exon e_start="18242" e_stop="18327"/>
          <exon e_start="18487" e_stop="18575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATTGAGATGAAGCAGAAATGAGCAACATGGCTATGGCTATGGCTTTGCCTTCTTCAACATCACCATTTCTTTTTTCTTGTACTACTCAAAAGCAAGCTCATAATTTCACCTCATCAAGAAAACCCCTCCATCGCTTTGTTACTCGTTCTACTCTCTCTGATGATCTCTTCCTAGCCGCCAAACACACTGTAAGACTCTTTCTTCTTTGCCCCTTTTTGGGGTTTTGCTAAAAGATTACAACTTTAAAGCTTTTTGGTTTGGTAAGACACTTTCTCGTTTGCCCTTTTTATGATTTTGCTAAAAAAATTACAGCTTTAAAGTTTTTGGTTTGTGTTTGGGTGTTGAATCTTGTGGAATTGTTGAAATGTAGGTGGATTCATATGTGAAGAATGGTATGGTTGTTGGATTAGGTTCAGGTCATGCTTCTACATTGGCTATACAGTATCTAGGTCAGAAACTACGAGCTGGTACTATAAAAGATGTCACTGCCATACCCACGTAAGTTGAATCTATTGATCCTAATAAATAAGGGAAATATGATACCATCGTAGAATCTGATTTGGGCTTGTATGTGTTCTTTGTTGGTAGTTCATAGTGCAGATTAACTTGTTTGTTGAATAGACACACTCCATGTTATGTTGTTTTACTCGTCGTGTTCCCACTTCAACTATAGGGTGTGTTGAGAAATGATTTTACCTTGGAATTATCAATTTCTGGATTCATTAGATAGATAGTTGACACATGAAACAGTACAACGTGGAGGATTGGGCGCGATGATAATGTATTTCCATAATTTGTTACTTGTTAGTTTGTCCATTAGATCTTTATACAGCTTACATATAAGTATCCTGGTTTTACTGTGATGACTGATGAGAAGCCTTGTTATTGAGTTTGTTTGTTTTTCCATTAGGAGTAATCAGGAACACTCTGATGCAGATGTGTTAGCAGTGCAAGTGAAGCAGCAAAGGCAGGAATTCCTTTGGAACAGTATGATGACAGTTTAAAGGTGCGCACCACTACTACGTAGATTCTTATTTAGAAACTTGCATTAGGACTTATTTAAAAATTTGAGCATTTAGTTACATTTTGGACCTCCATATGCATTCAGATTGCATTCATTGAAGCTGAAATGTTTTGTGCAAACATGTATGTGCTTCTTACATAGATTGATCTAGCATTTGATGAAGCTGACATTATGGAAGAAGAAACACTTGCTGCAATTATTGGTCGACGAAAACTGCAGGGAGATGATTC</genome_strand>
        <mrna_strand>GGGATTGAGATGAAGCAGAAATGAGCAACATGGCTATGGCTATGGCTTTGCCTTCTTCAACATCACCATTTCTTTTTTCTTGTACTACTCAAAAGCAAGCTCATAATTTCACCTCATCAAGAAAACCCCTCCATCGCTTTGTTACTCGTTCTACTCTCTCTGATGATCTCTTCCTAGCCGCCAAACACACT......................................................................................................................................................................................GTGGATTCATATGTGAAGAATGGTATGGTTGTTGGATTAGGTTCAGGTCATGCTTCTACATTGGCTATACAGTATCTAGGTCAGAAACTACGAGCTGGTACTATAAAAGATGTCACTGCCATACCCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................GAACACTCTGATGCAGATGTGTTAGCAGTGCAAGTGAAGCAGCAAAGGCAGGAATTCCTTTGGAACAGTATGATGACAGTTTAAAG...............................................................................................................................................................ATTGATCTAGCATTTGATGAAGCTGACATTATGGAAGAAGAAACACTTGCTGCAATTATTGGTCGACGAAAACTGCACGGAGATGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341974" ref_strand="+" ref_description="SGN-E341974 [cTOF-10-I19]">
      <seq>ttgagatgaagcagaaatgagcaacatggctatggctatggctttgccttcttcaacatcaccatttcttttttcttgtactactcaaaagcaagctcataatttcacctcatcaagaaaacccctccatcgctttgttactcgttctactctctctgatgatctcttcctagccgccaaacacactgtggattcatatgtgaagaatggtatggttgttggattaggttcaggtcatgcttctacattggctatacagtatctaggtcagaaactacgagctggtactataaaagatgtcactgccatacccacatgtgttagcagtgcaagtgaagcagcaaaggcaggaattcctttggaacagtatgatgacagtttaaagattgatctagcatttgatgaagctgacattatggaagaagaaacacttgctgcaattattggtcgacgaaaactgcagggagatgattctataattaaagagaagactattttagaagcagctgatcaactgatatttattataaaggaaaaacaattcaagggcggtgtagaagggttcagttccagtactaatcaaatctgttaactggcttgaaacagctgaagaaatagacgacctcttcctcggtgatgcagaggtttggaggaggccagctatagggtatgcaggtcctcttgggaggtgatttccctttagttactaaagaagggcacaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="17023" stop="19486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17323" g_stop="17509" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17510" i_stop="17691" i_length="182">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17692" g_stop="17819" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="315" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17820" i_stop="18257" i_length="438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18258" g_stop="18327" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="385" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18328" i_stop="18486" i_length="159">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18487" g_stop="18591" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="490" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18592" i_stop="18742" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18743" g_stop="18838" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="587" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18839" i_stop="18932" i_length="94">
            <donor d_prob="0.911" d_score="0.96"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18933" g_stop="18989" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="644" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18990" i_stop="19106" i_length="117">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19107" g_stop="19186" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="725" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E341974" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17323" e_stop="17509"/>
          <exon e_start="17692" e_stop="17819"/>
          <exon e_start="18258" e_stop="18327"/>
          <exon e_start="18487" e_stop="18591"/>
          <exon e_start="18743" e_stop="18838"/>
          <exon e_start="18933" e_stop="18989"/>
          <exon e_start="19107" e_stop="19186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGATGAAGCAGAAATGAGCAACATGGCTATGGCTATGGCTTTGCCTTCTTCAACATCACCATTTCTTTTTTCTTGTACTACTCAAAAGCAAGCTCATAATTTCACCTCATCAAGAAAACCCCTCCATCGCTTTGTTACTCGTTCTACTCTCTCTGATGATCTCTTCCTAGCCGCCAAACACACTGTAAGACTCTTTCTTCTTTGCCCCTTTTTGGGGTTTTGCTAAAAGATTACAACTTTAAAGCTTTTTGGTTTGGTAAGACACTTTCTCGTTTGCCCTTTTTATGATTTTGCTAAAAAAATTACAGCTTTAAAGTTTTTGGTTTGTGTTTGGGTGTTGAATCTTGTGGAATTGTTGAAATGTAGGTGGATTCATATGTGAAGAATGGTATGGTTGTTGGATTAGGTTCAGGTCATGCTTCTACATTGGCTATACAGTATCTAGGTCAGAAACTACGAGCTGGTACTATAAAAGATGTCACTGCCATACCCACGTAAGTTGAATCTATTGATCCTAATAAATAAGGGAAATATGATACCATCGTAGAATCTGATTTGGGCTTGTATGTGTTCTTTGTTGGTAGTTCATAGTGCAGATTAACTTGTTTGTTGAATAGACACACTCCATGTTATGTTGTTTTACTCGTCGTGTTCCCACTTCAACTATAGGGTGTGTTGAGAAATGATTTTACCTTGGAATTATCAATTTCTGGATTCATTAGATAGATAGTTGACACATGAAACAGTACAACGTGGAGGATTGGGCGCGATGATAATGTATTTCCATAATTTGTTACTTGTTAGTTTGTCCATTAGATCTTTATACAGCTTACATATAAGTATCCTGGTTTTACTGTGATGACTGATGAGAAGCCTTGTTATTGAGTTTGTTTGTTTTTCCATTAGGAGTAATCAGGAACACTCTGATGCAGATGTGTTAGCAGTGCAAGTGAAGCAGCAAAGGCAGGAATTCCTTTGGAACAGTATGATGACAGTTTAAAGGTGCGCACCACTACTACGTAGATTCTTATTTAGAAACTTGCATTAGGACTTATTTAAAAATTTGAGCATTTAGTTACATTTTGGACCTCCATATGCATTCAGATTGCATTCATTGAAGCTGAAATGTTTTGTGCAAACATGTATGTGCTTCTTACATAGATTGATCTAGCATTTGATGAAGCTGACATTATGGAAGAAGAAACACTTGCTGCAATTATTGGTCGACGAAAACTGCAGGGAGATGATTCTATAATTAAAGAGAAGGTCTGTCATATATCATGTGATGTATTTGTATTTCTTATCTTGATTTTGTAACATATTATTGTGTGTTTTTAGCTTGAAATTCCTTTTATCTTTTGTTATCTTCATTATCCACTGACTTCTTATGAGGCTGCATTGTCTAATATGGATGCAGACTATTTTAGAAGCAGCTGATCAACTGATATTTATTATAAAGGAAAAACAATTCAAGGGCGGTGTAGAA-GGTTCAGTTCCAGTACTAATCAAATCTGTAAGCTCCATACTAAATATACTACTGAATGCTGATGAACAAGTGTAGTTCAGAAAGCGAGAAACTATACTCATTTAGCTTATTCACTTCTCAGGTTAACTGGCTTGAAACAGCTGAAGAAATAGACGACCTCTTCCTCGGTGATGCAGAGGTTAGTCCTAATCATGTATAAAAGTGTGCTCTCTCCTTGCCACACTCCAATATTTGCAAAGGACCAAGATAGGATACATTTCATAATCAGATAGATAACTTTTGTTTTTCTATGCAGGTTTGGAGGAGGCCAGCTATAGGGTATGCAGGTCCTCTT-GGAGGTGATTTCCCTTTAGTTACTAAAGAAGGGCACAACAT</genome_strand>
        <mrna_strand>TTGAGATGAAGCAGAAATGAGCAACATGGCTATGGCTATGGCTTTGCCTTCTTCAACATCACCATTTCTTTTTTCTTGTACTACTCAAAAGCAAGCTCATAATTTCACCTCATCAAGAAAACCCCTCCATCGCTTTGTTACTCGTTCTACTCTCTCTGATGATCTCTTCCTAGCCGCCAAACACACT......................................................................................................................................................................................GTGGATTCATATGTGAAGAATGGTATGGTTGTTGGATTAGGTTCAGGTCATGCTTCTACATTGGCTATACAGTATCTAGGTCAGAAACTACGAGCTGGTACTATAAAAGATGTCACTGCCATACCCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTTAGCAGTGCAAGTGAAGCAGCAAAGGCAGGAATTCCTTTGGAACAGTATGATGACAGTTTAAAG...............................................................................................................................................................ATTGATCTAGCATTTGATGAAGCTGACATTATGGAAGAAGAAACACTTGCTGCAATTATTGGTCGACGAAAACTGCAGGGAGATGATTCTATAATTAAAGAGAAG.......................................................................................................................................................ACTATTTTAGAAGCAGCTGATCAACTGATATTTATTATAAAGGAAAAACAATTCAAGGGCGGTGTAGAAGGGTTCAGTTCCAGTACTAATCAAATCT..............................................................................................GTTAACTGGCTTGAAACAGCTGAAGAAATAGACGACCTCTTCCTCGGTGATGCAGAG.....................................................................................................................GTTTGGAGGAGGCCAGCTATAGGGTATGCAGGTCCTCTTGGGAGGTGATTTCCCTTTAGTTACTAAAGAAGGGCACAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278019" ref_strand="+" ref_description="SGN-E278019 [cLER-4-L5]">
      <seq>agaaatgagcaacatggctatggctatggctttgccttcttcaacatcaccatttcttttttcttgtactactcaaaagcaagctcataatttcacctcatcaagaaaacccctccatcgctttgttactcgttctactctctctgatgatctcttcctagccgccaaacacactgtggattcatatgtgaagaatggtatggttgttggattaggttcaggtcatgcttctacattggctatacagtatctaggtcagaaactacgagctggtactataaaagatgtcactgccatacccacatgtgttagcagtgcaagtgaagcagcaaaggcaggaattcctttggaacagtatgatgacagtttaaagattgatctagcatttgatgaagctgacattatggaagaagaaacacttgctgcaattattggtcgacgaaaactgcagggagatgattctataattaaagagaagactattttagaagcagctgatcaactgatatttattataaaggaaaaacaattcaagggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="17035" stop="19102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17335" g_stop="17509" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17510" i_stop="17691" i_length="182">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17692" g_stop="17819" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="303" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17820" i_stop="18257" i_length="438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18258" g_stop="18327" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="373" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18328" i_stop="18486" i_length="159">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18487" g_stop="18591" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="478" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18592" i_stop="18742" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18743" g_stop="18802" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="538" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E278019" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17335" e_stop="17509"/>
          <exon e_start="17692" e_stop="17819"/>
          <exon e_start="18258" e_stop="18327"/>
          <exon e_start="18487" e_stop="18591"/>
          <exon e_start="18743" e_stop="18802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGAGCAACATGGCTATGGCTATGGCTTTGCCTTCTTCAACATCACCATTTCTTTTTTCTTGTACTACTCAAAAGCAAGCTCATAATTTCACCTCATCAAGAAAACCCCTCCATCGCTTTGTTACTCGTTCTACTCTCTCTGATGATCTCTTCCTAGCCGCCAAACACACTGTAAGACTCTTTCTTCTTTGCCCCTTTTTGGGGTTTTGCTAAAAGATTACAACTTTAAAGCTTTTTGGTTTGGTAAGACACTTTCTCGTTTGCCCTTTTTATGATTTTGCTAAAAAAATTACAGCTTTAAAGTTTTTGGTTTGTGTTTGGGTGTTGAATCTTGTGGAATTGTTGAAATGTAGGTGGATTCATATGTGAAGAATGGTATGGTTGTTGGATTAGGTTCAGGTCATGCTTCTACATTGGCTATACAGTATCTAGGTCAGAAACTACGAGCTGGTACTATAAAAGATGTCACTGCCATACCCACGTAAGTTGAATCTATTGATCCTAATAAATAAGGGAAATATGATACCATCGTAGAATCTGATTTGGGCTTGTATGTGTTCTTTGTTGGTAGTTCATAGTGCAGATTAACTTGTTTGTTGAATAGACACACTCCATGTTATGTTGTTTTACTCGTCGTGTTCCCACTTCAACTATAGGGTGTGTTGAGAAATGATTTTACCTTGGAATTATCAATTTCTGGATTCATTAGATAGATAGTTGACACATGAAACAGTACAACGTGGAGGATTGGGCGCGATGATAATGTATTTCCATAATTTGTTACTTGTTAGTTTGTCCATTAGATCTTTATACAGCTTACATATAAGTATCCTGGTTTTACTGTGATGACTGATGAGAAGCCTTGTTATTGAGTTTGTTTGTTTTTCCATTAGGAGTAATCAGGAACACTCTGATGCAGATGTGTTAGCAGTGCAAGTGAAGCAGCAAAGGCAGGAATTCCTTTGGAACAGTATGATGACAGTTTAAAGGTGCGCACCACTACTACGTAGATTCTTATTTAGAAACTTGCATTAGGACTTATTTAAAAATTTGAGCATTTAGTTACATTTTGGACCTCCATATGCATTCAGATTGCATTCATTGAAGCTGAAATGTTTTGTGCAAACATGTATGTGCTTCTTACATAGATTGATCTAGCATTTGATGAAGCTGACATTATGGAAGAAGAAACACTTGCTGCAATTATTGGTCGACGAAAACTGCAGGGAGATGATTCTATAATTAAAGAGAAGGTCTGTCATATATCATGTGATGTATTTGTATTTCTTATCTTGATTTTGTAACATATTATTGTGTGTTTTTAGCTTGAAATTCCTTTTATCTTTTGTTATCTTCATTATCCACTGACTTCTTATGAGGCTGCATTGTCTAATATGGATGCAGACTATTTTAGAAGCAGCTGATCAACTGATATTTATTATAAAGGAAAAACAATTCAAGGGC</genome_strand>
        <mrna_strand>AGAAATGAGCAACATGGCTATGGCTATGGCTTTGCCTTCTTCAACATCACCATTTCTTTTTTCTTGTACTACTCAAAAGCAAGCTCATAATTTCACCTCATCAAGAAAACCCCTCCATCGCTTTGTTACTCGTTCTACTCTCTCTGATGATCTCTTCCTAGCCGCCAAACACACT......................................................................................................................................................................................GTGGATTCATATGTGAAGAATGGTATGGTTGTTGGATTAGGTTCAGGTCATGCTTCTACATTGGCTATACAGTATCTAGGTCAGAAACTACGAGCTGGTACTATAAAAGATGTCACTGCCATACCCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTTAGCAGTGCAAGTGAAGCAGCAAAGGCAGGAATTCCTTTGGAACAGTATGATGACAGTTTAAAG...............................................................................................................................................................ATTGATCTAGCATTTGATGAAGCTGACATTATGGAAGAAGAAACACTTGCTGCAATTATTGGTCGACGAAAACTGCAGGGAGATGATTCTATAATTAAAGAGAAG.......................................................................................................................................................ACTATTTTAGAAGCAGCTGATCAACTGATATTTATTATAAAGGAAAAACAATTCAAGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="-" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="20678" stop="19625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20378" g_stop="19920" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="-" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20378" e_stop="19920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTATTCGAATACGAAATTAAATTACAATACACACAAAAAGAATAGTTTAATTTTTCTCTCTTTAAACTAAGGAGTGAAAGAAAAAAACAAAATAAAAATAAAAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCATAAATAATTTTTTT--AAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTGTAACGGCAGGGGTATA--TGAGTCGTTTGTATAACAGCAAGGGCATATATGAGCCACTTTTATAACGAGGGGTATATCAGCTCTAAATGACAAAGTTGAGGGGTATATCAGACCGTTTTCCCTTGTTTTTATATATTAATTC</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTT-TTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTTAAAATTTCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229107" ref_strand="+" ref_description="SGN-E229107 [cLEL-29-P9](-)">
      <seq>ggcatatggatttgtcgtacttttcagtggtttctggccaacattggcagtttttcttcagaagatacctattctaggttggatcttccagcagccctatatcagatcgttctttgaccgctaccgtggaaaacgtgtccctgtgtagtatcattttgaaagatacaaagcaaacaagattgattagtcccgcttgcacgaatttgtaagatttttatatctagaacaggatgatagtaattgtttgttcctagttggttgtattggcccttctgtgctgtaaatcagatcatgtacctagttaccaatattatacttttgttttctagatgaaagtggagaaaaaaacttgatctccagatctttaatcaatggtacaaagcaagtgtttttaaaaaaccccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="-" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="23173" stop="20984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22873" g_stop="22847" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22846" i_stop="22769" i_length="78">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22768" g_stop="22687" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="109" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22686" i_stop="21570" i_length="1117">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21569" g_stop="21298" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="381" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="404" polyA_stop="419"/>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="-" ref_id="SGN-E229107" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22873" e_stop="22847"/>
          <exon e_start="22768" e_stop="22687"/>
          <exon e_start="21569" e_stop="21298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATATGGATTTGTCGTACTTTTCAGGTAAATTAGTTACATGGTTCCTGACTGCCCTAATAATCTTTTAGTTGTTTTTGGGTACTGATGTACTGTTTTGCACAGTGGTTTCTGGCCAACATTGGCAGTTTTTCTTCAGAAGATACCTATTCTAGGTTGGATCTTCCAGCAGCCCTATATCAGATCGGTATGTTTGATTGCATTGTTCATACTTTATTCTTGTATTTCTTTAAGTTTGGGGGAATCATTAGTTTTTTAGAAAGCATTTTCTTACTTCAATTGTGTATAGTCCTTTCGTTCTGACCTTAATAGATTGGTTGGACAATGATATGCTTGTGGTAGAAAGGAACCAATGGCTGATATATGGTGTAGGAGATAATCCATAGATTTTACAGAGAAACATCTGGAAGTAGTCTTAAGTGCCTTGTATTTTGCTTATATTATGACTAGGCTGTACAATAATCACCAAGGATCATAGAAGGAACAAAATGAAATTGCCATTTTTTCACCCAGCCACTAGAAAATTGCTTTAAAATTAGTTGTTGCTTATTATTCTTTTATTTTTTTATCCTCTTATCACAAACCACCATATGATTATTCTAATGGCATTCCCTAAACATTTACAGAATATGACCAGTCTCTTTATATTTTGCCTGTATGATATTGGGAAGCTATAGAGGAGCTCTCCCTCTTCATTGAGTATGTTATAAAGTATCAAGTCATGTATTTGTGTTTAAATGCATGTATGTATCACTCTATAGCTACCCTGATAAATGAACCAAAAAGATCGGTTTGGTTGTTAGATATCATCTGATGATAATGTGATTTGAGTCTGGAAATGCCTGACTCTAGGAAGGGATCATAGAAATTATCGAGTATCAAGATGCCTTATCATGAAGTAATTGTCCGACATTCTGGTCCTCATGCATCTGTATGTAGATATTGAGATACTGCATTAAAGACGGATCCCCCAGAAAGGAAAATCCTTCTGTGATGCAATTTTACGAACCTCAATTTCCATCCAAACCCCTATTGCCATGGTTAGCAACCTTCCTGCCTCACTGTAATATCTCCACAAAGTATTTCAGAAGAAGATAAGAACTTCCAACTTATAAAATTGAATCATAGTTTTTCTCAAATACAAGTATCTCTTCAGTGGCATTAGATAATAAACTTATGGAATTGTTCTATATAATTCTTCTGTTGCTCTAATATACTGTTACTCAATCGAACCTAACATGATGCATTCTTGTGGGTTCCTGTTTTGTTTCCTTGGTCTGAGATTATTTTTTCTCTCTCTGCAGTTCTTTGACCGCTACCGTGGAAAACGTGTCCCTGTGTAGTATCATTTTGAAAGATACAAAGCAAACAAGATTGATTAGTCCCGCTTGCACGAATTTGTAAGATTTTTATATCTAGAACAGGATGATAGTAATTGTTTGTTCCTAGTTGGTTGTATTGGCCTTTCTGTGCTGTAAATCAGATCATGTACCTAGTTACCAATATTATACTTTTGTTTTCTAGATGAAAGTGGAGAAAAAAACTTGATCTCCAGATCTTTAATCAATGGTACAAA</genome_strand>
        <mrna_strand>GGCATATGGATTTGTCGTACTTTTCAG..............................................................................TGGTTTCTGGCCAACATTGGCAGTTTTTCTTCAGAAGATACCTATTCTAGGTTGGATCTTCCAGCAGCCCTATATCAGATCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTGACCGCTACCGTGGAAAACGTGTCCCTGTGTAGTATCATTTTGAAAGATACAAAGCAAACAAGATTGATTAGTCCCGCTTGCACGAATTTGTAAGATTTTTATATCTAGAACAGGATGATAGTAATTGTTTGTTCCTAGTTGGTTGTATTGGCCCTTCTGTGCTGTAAATCAGATCATGTACCTAGTTACCAATATTATACTTTTGTTTTCTAGATGAAAGTGGAGAAAAAAACTTGATCTCCAGATCTTTAATCAATGGTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711769" ref_strand="+" ref_description="SGN-E711769 [FB02DG03]">
      <seq>caataaagatagggntaggattgangggatttggagtgtttccctaaacttggggatngtgttcttctttganaagggaataattgnnatgggaaatatcntcttcttctnaggcctggcactgaccattggtctcaagtcatcactacagttctttagtaaacgtagtaatttcaagggaacaatatcatttggtgttggctttttctttgttataattggttggcccatactgggtatgattcttgaggcatatggatttgtcgtacttttcagtggtttctggccaacattggcagtttttcttcagaagatacctattctaggttggatcttccagcagccctatatcagatcgttctttgaccgctaccgtggaaaacgtgtccctgtgtagtatcattttgaaagatacaaagcaaacaagattgattagtcccgcttgcacgaatttgtaagatttttatatctagaacaggatgatagtaattgtttgttcctagttggttgtattggcctttctgtgctgtaaatcagatcatgtacctagttaccaatattatacttttgttttctagatgaaagtggagaaaaaaacttgatctccagatcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="-" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="23666" stop="21012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23428" g_stop="23423" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23422" i_stop="23362" i_length="61">
            <donor d_prob="0.750" d_score="0.00"/>
            <acceptor a_prob="0.815" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23361" g_stop="23270" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="97" r_length="91" r_score="0.870"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23269" i_stop="23146" i_length="124">
            <donor d_prob="0.994" d_score="0.88"/>
            <acceptor a_prob="0.979" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23145" g_stop="23065" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="178" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23064" i_stop="22945" i_length="120">
            <donor d_prob="0.401" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22944" g_stop="22847" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="276" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22846" i_stop="22769" i_length="78">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22768" g_stop="22687" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="358" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22686" i_stop="21570" i_length="1117">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21569" g_stop="21312" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="616" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="-" ref_id="SGN-E711769" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23428" e_stop="23423"/>
          <exon e_start="23361" e_stop="23270"/>
          <exon e_start="23145" e_stop="23065"/>
          <exon e_start="22944" e_stop="22847"/>
          <exon e_start="22768" e_stop="22687"/>
          <exon e_start="21569" e_stop="21312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGCATGTTGTGCTGCTATTTGAAACGTTATGTCTGCTAAGCTTGGGGTGCTTGTTGTAACAGAGATAGGGCTAGGATTGACGGGATTTGGAGTGTTTTTCTCATTCTTGGGGATCGTGTTCTTCTTTGACAAGGGACTAATTGCCATGGGAAATGTAAGTAAAAAGTCTTGCCATTATCATCACAATCTCATAAGTTTTCTCTGACCTGTCATTTACCACTTTCCTTTGTTTTATGACTCCTGCCTGGATTTGACATAGTGTTATTTTACTGAATCAGATCCTCTTCTTCTCAGGGGTGGCACTGACCATTGGTCTCAAGTCATCACTACAGTTCTTTAGTAAACGTAGTAATTTCAAGGTTTAGTTTGCTTTTGGGCCTTTTTTTCTTCCCCGTTCATCTCAACAATTCCTCTTGCTCTCTCTAGAATTGTTTGTTTAGTGTTACATCTTTTCTGTTTCTGTTTCTTTTTTTGCACAGGGAACAATATCATTTGGTGTTGGCTTTTTCTTTGTTATAATTGGTTGGCCCATACTGGGTATGATTCTTGAGGCATATGGATTTGTCGTACTTTTCAGGTAAATTAGTTACATGGTTCCTGACTGCCCTAATAATCTTTTAGTTGTTTTTGGGTACTGATGTACTGTTTTGCACAGTGGTTTCTGGCCAACATTGGCAGTTTTTCTTCAGAAGATACCTATTCTAGGTTGGATCTTCCAGCAGCCCTATATCAGATCGGTATGTTTGATTGCATTGTTCATACTTTATTCTTGTATTTCTTTAAGTTTGGGGGAATCATTAGTTTTTTAGAAAGCATTTTCTTACTTCAATTGTGTATAGTCCTTTCGTTCTGACCTTAATAGATTGGTTGGACAATGATATGCTTGTGGTAGAAAGGAACCAATGGCTGATATATGGTGTAGGAGATAATCCATAGATTTTACAGAGAAACATCTGGAAGTAGTCTTAAGTGCCTTGTATTTTGCTTATATTATGACTAGGCTGTACAATAATCACCAAGGATCATAGAAGGAACAAAATGAAATTGCCATTTTTTCACCCAGCCACTAGAAAATTGCTTTAAAATTAGTTGTTGCTTATTATTCTTTTATTTTTTTATCCTCTTATCACAAACCACCATATGATTATTCTAATGGCATTCCCTAAACATTTACAGAATATGACCAGTCTCTTTATATTTTGCCTGTATGATATTGGGAAGCTATAGAGGAGCTCTCCCTCTTCATTGAGTATGTTATAAAGTATCAAGTCATGTATTTGTGTTTAAATGCATGTATGTATCACTCTATAGCTACCCTGATAAATGAACCAAAAAGATCGGTTTGGTTGTTAGATATCATCTGATGATAATGTGATTTGAGTCTGGAAATGCCTGACTCTAGGAAGGGATCATAGAAATTATCGAGTATCAAGATGCCTTATCATGAAGTAATTGTCCGACATTCTGGTCCTCATGCATCTGTATGTAGATATTGAGATACTGCATTAAAGACGGATCCCCCAGAAAGGAAAATCCTTCTGTGATGCAATTTTACGAACCTCAATTTCCATCCAAACCCCTATTGCCATGGTTAGCAACCTTCCTGCCTCACTGTAATATCTCCACAAAGTATTTCAGAAGAAGATAAGAACTTCCAACTTATAAAATTGAATCATAGTTTTTCTCAAATACAAGTATCTCTTCAGTGGCATTAGATAATAAACTTATGGAATTGTTCTATATAATTCTTCTGTTGCTCTAATATACTGTTACTCAATCGAACCTAACATGATGCATTCTTGTGGGTTCCTGTTTTGTTTCCTTGGTCTGAGATTATTTTTTCTCTCTCTGCAGTTCTTTGACCGCTACCGTGGAAAACGTGTCCCTGTGTAGTATCATTTTGAAAGATACAAAGCAAACAAGATTGATTAGTCCCGCTTGCACGAATTTGTAAGATTTTTATATCTAGAACAGGATGATAGTAATTGTTTGTTCCTAGTTGGTTGTATTGGCCTTTCTGTGCTGTAAATCAGATCATGTACCTAGTTACCAATATTATACTTTTGTTTTCTAGATGAAAGTGGAGAAAAAAACTTGATCTCCAGATCTTTA</genome_strand>
        <mrna_strand>CAATAA.............................................................AGATAGGGNTAGGATTGANGGGATTTGGAGTGTTTCCCT-AAACTTGGGGATNGTGTTCTTCTTTGANAAGGGAATAATTGNNATGGGAAAT............................................................................................................................ATCNTCTTCTTCTNAGGCCTGGCACTGACCATTGGTCTCAAGTCATCACTACAGTTCTTTAGTAAACGTAGTAATTTCAAG........................................................................................................................GGAACAATATCATTTGGTGTTGGCTTTTTCTTTGTTATAATTGGTTGGCCCATACTGGGTATGATTCTTGAGGCATATGGATTTGTCGTACTTTTCAG..............................................................................TGGTTTCTGGCCAACATTGGCAGTTTTTCTTCAGAAGATACCTATTCTAGGTTGGATCTTCCAGCAGCCCTATATCAGATCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTGACCGCTACCGTGGAAAACGTGTCCCTGTGTAGTATCATTTTGAAAGATACAAAGCAAACAAGATTGATTAGTCCCGCTTGCACGAATTTGTAAGATTTTTATATCTAGAACAGGATGATAGTAATTGTTTGTTCCTAGTTGGTTGTATTGGCCTTTCTGTGCTGTAAATCAGATCATGTACCTAGTTACCAATATTATACTTTTGTTTTCTAGATGAAAGTGGAGAAAAAAACTTGATCTCCAGATCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550920" ref_strand="+" ref_description="SGN-E550920 [TUS-54-F5]">
      <seq>ttttttgcacagggaacaatatcatttggtgttggctttttctttgttataattggttggcccatactgggtatgattcttgaggcatatggatttgtcgtacttttcagtggtttctggccaacattggcagtttttcttcagaagatacctattctaggttggatcttccagcagccctatatcagatcggtatgtttgattgcattgttcatactttattcttgtatttctttaagtttgggggaatcattagttttttagaaagcattttcttacttcaattgtgtatagtcctttcgttctgaccttaatagattggttggacaatgatatgcttgtggtagaaaggaaccaatggctgatatatggtgtaggagataatccatagattttacagagaaacatctggaagtagtcttaagtgccttgtattttgcttatattatgactaggctgtacaataatcaccaaggatcatagaaggaacaaaatgaaattgccattttttcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="-" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="23256" stop="22064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22956" g_stop="22847" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22846" i_stop="22769" i_length="78">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22768" g_stop="22364" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="515" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="-" ref_id="SGN-E550920" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22956" e_stop="22847"/>
          <exon e_start="22768" e_stop="22364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGCACAGGGAACAATATCATTTGGTGTTGGCTTTTTCTTTGTTATAATTGGTTGGCCCATACTGGGTATGATTCTTGAGGCATATGGATTTGTCGTACTTTTCAGGTAAATTAGTTACATGGTTCCTGACTGCCCTAATAATCTTTTAGTTGTTTTTGGGTACTGATGTACTGTTTTGCACAGTGGTTTCTGGCCAACATTGGCAGTTTTTCTTCAGAAGATACCTATTCTAGGTTGGATCTTCCAGCAGCCCTATATCAGATCGGTATGTTTGATTGCATTGTTCATACTTTATTCTTGTATTTCTTTAAGTTTGGGGGAATCATTAGTTTTTTAGAAAGCATTTTCTTACTTCAATTGTGTATAGTCCTTTCGTTCTGACCTTAATAGATTGGTTGGACAATGATATGCTTGTGGTAGAAAGGAACCAATGGCTGATATATGGTGTAGGAGATAATCCATAGATTTTACAGAGAAACATCTGGAAGTAGTCTTAAGTGCCTTGTATTTTGCTTATATTATGACTAGGCTGTACAATAATCACCAAGGATCATAGAAGGAACAAAATGAAATTGCCATTTTTTCACC</genome_strand>
        <mrna_strand>TTTTTTGCACAGGGAACAATATCATTTGGTGTTGGCTTTTTCTTTGTTATAATTGGTTGGCCCATACTGGGTATGATTCTTGAGGCATATGGATTTGTCGTACTTTTCAG..............................................................................TGGTTTCTGGCCAACATTGGCAGTTTTTCTTCAGAAGATACCTATTCTAGGTTGGATCTTCCAGCAGCCCTATATCAGATCGGTATGTTTGATTGCATTGTTCATACTTTATTCTTGTATTTCTTTAAGTTTGGGGGAATCATTAGTTTTTTAGAAAGCATTTTCTTACTTCAATTGTGTATAGTCCTTTCGTTCTGACCTTAATAGATTGGTTGGACAATGATATGCTTGTGGTAGAAAGGAACCAATGGCTGATATATGGTGTAGGAGATAATCCATAGATTTTACAGAGAAACATCTGGAAGTAGTCTTAAGTGCCTTGTATTTTGCTTATATTATGACTAGGCTGTACAATAATCACCAAGGATCATAGAAGGAACAAAATGAAATTGCCATTTTTTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688653" ref_strand="+" ref_description="SGN-E688653 [t3_tus_54_F05]">
      <seq>ttttttgcacagggaacaatatcatttggtgttggctttttctttgttataattggttggcccatactgggtatgattcttgaggcatatggatttgtcgtacttttcagtggtttctggccaacattggcagtttttcttcagaagatacctattctaggttggatcttccagcagccctatatcagatcggtatgtttgattgcattgttcatactttattcttgtatttctttaagtttgggggaatcattagttttttagaaagcattttcttacttcaattgtgtatagtcctttcgttctgaccttaatagattggttggacaatgatatgcttgtggtagaaaggaaccaatggctgatatatggtgtaggagataatccatagattttacagagaaacatctggaagtagtcttaagtgccttgtattttgcttatattatgactaggctgtacaataatcaccaaggatcatagaaggaacaaaatgaaattgccattttttcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="-" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="23256" stop="22064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22956" g_stop="22847" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22846" i_stop="22769" i_length="78">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22768" g_stop="22364" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="515" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="-" ref_id="SGN-E688653" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22956" e_stop="22847"/>
          <exon e_start="22768" e_stop="22364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGCACAGGGAACAATATCATTTGGTGTTGGCTTTTTCTTTGTTATAATTGGTTGGCCCATACTGGGTATGATTCTTGAGGCATATGGATTTGTCGTACTTTTCAGGTAAATTAGTTACATGGTTCCTGACTGCCCTAATAATCTTTTAGTTGTTTTTGGGTACTGATGTACTGTTTTGCACAGTGGTTTCTGGCCAACATTGGCAGTTTTTCTTCAGAAGATACCTATTCTAGGTTGGATCTTCCAGCAGCCCTATATCAGATCGGTATGTTTGATTGCATTGTTCATACTTTATTCTTGTATTTCTTTAAGTTTGGGGGAATCATTAGTTTTTTAGAAAGCATTTTCTTACTTCAATTGTGTATAGTCCTTTCGTTCTGACCTTAATAGATTGGTTGGACAATGATATGCTTGTGGTAGAAAGGAACCAATGGCTGATATATGGTGTAGGAGATAATCCATAGATTTTACAGAGAAACATCTGGAAGTAGTCTTAAGTGCCTTGTATTTTGCTTATATTATGACTAGGCTGTACAATAATCACCAAGGATCATAGAAGGAACAAAATGAAATTGCCATTTTTTCACC</genome_strand>
        <mrna_strand>TTTTTTGCACAGGGAACAATATCATTTGGTGTTGGCTTTTTCTTTGTTATAATTGGTTGGCCCATACTGGGTATGATTCTTGAGGCATATGGATTTGTCGTACTTTTCAG..............................................................................TGGTTTCTGGCCAACATTGGCAGTTTTTCTTCAGAAGATACCTATTCTAGGTTGGATCTTCCAGCAGCCCTATATCAGATCGGTATGTTTGATTGCATTGTTCATACTTTATTCTTGTATTTCTTTAAGTTTGGGGGAATCATTAGTTTTTTAGAAAGCATTTTCTTACTTCAATTGTGTATAGTCCTTTCGTTCTGACCTTAATAGATTGGTTGGACAATGATATGCTTGTGGTAGAAAGGAACCAATGGCTGATATATGGTGTAGGAGATAATCCATAGATTTTACAGAGAAACATCTGGAAGTAGTCTTAAGTGCCTTGTATTTTGCTTATATTATGACTAGGCTGTACAATAATCACCAAGGATCATAGAAGGAACAAAATGAAATTGCCATTTTTTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250569" ref_strand="+" ref_description="SGN-E250569 [cLEG-21-G7]">
      <seq>ttttttgcacaaggaacaatatcatttggtgttggctttttctttgttataattggttggcccatactgggtatgattcttgaggcatatggatttgtcgtacttttcagtggtttctggccaacattggcagtttttcttcagaagaatacctattctaggttggatcttccagcagccctatatcagatcggtatgtttgattgcattgttcatactttattcttgtatttctttaagtttgggggaatcattagttttttagaaagcattttcttacttcaattgtgtatagtcctttcgttctgaccttaatagattggttggacaatgatatgcttgtggtagaaaggaaccaatggctgatatatggtgtaggagataatccatagattttacagagaaacatctggaagtagtcttaagtgccttgtattttgcttatattatgactaggctgtacaataatcaccaaggatcatagaaggaacaaaatgaaattgccattttttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="-" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="23256" stop="22065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22956" g_stop="22847" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22846" i_stop="22769" i_length="78">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22768" g_stop="22365" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="515" r_length="405" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="-" ref_id="SGN-E250569" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22956" e_stop="22847"/>
          <exon e_start="22768" e_stop="22365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGCACAGGGAACAATATCATTTGGTGTTGGCTTTTTCTTTGTTATAATTGGTTGGCCCATACTGGGTATGATTCTTGAGGCATATGGATTTGTCGTACTTTTCAGGTAAATTAGTTACATGGTTCCTGACTGCCCTAATAATCTTTTAGTTGTTTTTGGGTACTGATGTACTGTTTTGCACAGTGGTTTCTGGCCAACATTGGCAGTTTTTCTTCAGAAG-ATACCTATTCTAGGTTGGATCTTCCAGCAGCCCTATATCAGATCGGTATGTTTGATTGCATTGTTCATACTTTATTCTTGTATTTCTTTAAGTTTGGGGGAATCATTAGTTTTTTAGAAAGCATTTTCTTACTTCAATTGTGTATAGTCCTTTCGTTCTGACCTTAATAGATTGGTTGGACAATGATATGCTTGTGGTAGAAAGGAACCAATGGCTGATATATGGTGTAGGAGATAATCCATAGATTTTACAGAGAAACATCTGGAAGTAGTCTTAAGTGCCTTGTATTTTGCTTATATTATGACTAGGCTGTACAATAATCACCAAGGATCATAGAAGGAACAAAATGAAATTGCCATTTTTTCAC</genome_strand>
        <mrna_strand>TTTTTTGCACAAGGAACAATATCATTTGGTGTTGGCTTTTTCTTTGTTATAATTGGTTGGCCCATACTGGGTATGATTCTTGAGGCATATGGATTTGTCGTACTTTTCAG..............................................................................TGGTTTCTGGCCAACATTGGCAGTTTTTCTTCAGAAGAATACCTATTCTAGGTTGGATCTTCCAGCAGCCCTATATCAGATCGGTATGTTTGATTGCATTGTTCATACTTTATTCTTGTATTTCTTTAAGTTTGGGGGAATCATTAGTTTTTTAGAAAGCATTTTCTTACTTCAATTGTGTATAGTCCTTTCGTTCTGACCTTAATAGATTGGTTGGACAATGATATGCTTGTGGTAGAAAGGAACCAATGGCTGATATATGGTGTAGGAGATAATCCATAGATTTTACAGAGAAACATCTGGAAGTAGTCTTAAGTGCCTTGTATTTTGCTTATATTATGACTAGGCTGTACAATAATCACCAAGGATCATAGAAGGAACAAAATGAAATTGCCATTTTTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255091" ref_strand="+" ref_description="SGN-E255091 [cLEG-31-L11]">
      <seq>ctcactgtcttagaagctatgtcagctcatggagtccccacattgatttactctagtacatgtgcgacatatggagagcctgaaaagatgcctattaccgaagaaactccacagctccctattaatccatatggaaaagcgaagaaaatggcagaggatattattttggatttccataagaactcaaacatggctgtcatgattttgaggtacttcaatgtgattggatctgatccagagggaagactaggagaagctccccggcctgaacttcgtgaacatgggcgaatttctggtgcttgttatgatgcagctcgtggaatcatacctggtctcaaggttagaggaacagactataagacaacagatggtacatgcattagggattatatagatgtcactgatctggttgatgctcatgtgaaagctcttgaaaagtctaggcctgggaaggtgggaatctacaatgttggaaccggaagaggtagatcagtgaaggaatttgtggaggcttgcaaggcagccactggagttcctatcaaagttgacttccttcctcgtcgccctggtgattatgcagaagtctttagtgatcctactaagataaaacttgaactgaactggacaggccaacacactgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="23535" stop="25472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23835" g_stop="23948" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23949" i_stop="24054" i_length="106">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24055" g_stop="24149" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="209" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24150" i_stop="24293" i_length="144">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24294" g_stop="24423" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="339" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24424" i_stop="24783" i_length="360">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24784" g_stop="24928" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="484" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24929" i_stop="25013" i_length="85">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25014" g_stop="25172" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="643" r_length="159" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E255091" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23835" e_stop="23948"/>
          <exon e_start="24055" e_stop="24149"/>
          <exon e_start="24294" e_stop="24423"/>
          <exon e_start="24784" e_stop="24928"/>
          <exon e_start="25014" e_stop="25172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTGTCTTAGAAGCTATGTCAGCTCATGGAGTCCCCACATTGATTTACTCTAGTACATGTGCGACATATGGAGAGCCTGAAAAGATGCCTATTACCGAAGAAACTCCACAGGTGGGGTGTAAAGGCCGTATTTACTTCTAGTATGCTAGAACCGTATGATTGCCTCTCTCTTATGTCAATGGTAAGCAACAGCTGAGAGTTTTTCGTCAAATTGCAGCTCCCTATTAATCCATATGGAAAAGCGAAGAAAATGGCAGAGGATATTATTTTGGATTTCCATAAGAACTCAAACATGGCTGTCATGATTTTGAGGTAGGTGTTCGATATGTCTTTGCTAATATACCCTTTCCCTTTGATCGATGGTTGAAACCTGAGTCATAACTATTGGTTGACTGGCTATGTCTAGCACAATTAGCATGGGTTAAATTAATGCTAAATTGTTTTCTGAAAATACAGGTACTTCAATGTGATTGGATCTGATCCAGAGGGAAGACTAGGAGAAGCTCCCCGGCCTGAACTTCGTGAACATGGGCGAATTTCTGGTGCTTGTTATGATGCAGCTCGTGGAATCATACCTGGTCTCAAGGTCAGCCAATAATAGCCATATCTATACTCGATGTATTTGCTATTTATCATCTATGTACTCGCGGTTGTTGAATTGTCAGAAGTCGCTTCATGCATGGAGCATTTCTAATATCTACCAGAAAATATCTGGTTCTTACGAGTGAAATTCATACAGATAAAGTTTATTGGCTACACTATTCTGATACCCAGTTGCCATTGTCACTCTTAATAACATGTAAAAGACAAACATTCCGCTGTTCTATCAGCAATTCTTCTAGTATGGGCTATGAGGGGGGGGGGGGGGGGGGATGGAATGTGTCAATGATAACATGAATAGTTATGATCTGCCCTCATCTCTGAGAGCCTTTGTTTCGTCGTGCAGGTTAGAGGAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAGGTAAGGCGTTCCTTCTTGTGTCATCATATGCAGTTTCTCACTTTGAGTCTAGTTCTCACTTTATTCTTTTGGTCTCTGAGAACAGGTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATC</genome_strand>
        <mrna_strand>CTCACTGTCTTAGAAGCTATGTCAGCTCATGGAGTCCCCACATTGATTTACTCTAGTACATGTGCGACATATGGAGAGCCTGAAAAGATGCCTATTACCGAAGAAACTCCACAG..........................................................................................................CTCCCTATTAATCCATATGGAAAAGCGAAGAAAATGGCAGAGGATATTATTTTGGATTTCCATAAGAACTCAAACATGGCTGTCATGATTTTGAG................................................................................................................................................GTACTTCAATGTGATTGGATCTGATCCAGAGGGAAGACTAGGAGAAGCTCCCCGGCCTGAACTTCGTGAACATGGGCGAATTTCTGGTGCTTGTTATGATGCAGCTCGTGGAATCATACCTGGTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................GTTAGAGGAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAG.....................................................................................GTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGGCCAACACACTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204259" ref_strand="+" ref_description="SGN-E204259 [cLEC-13-D8]">
      <seq>gacatatggagagcctgaaaagatgcctattaccgaagaaactccacagctccctattaatccatatggaaaagcgaagaaaatggcagaggatattattttggatttccataagaactcaaacatggctgtcatgattttgaggtacttcaatgtgattggatctgatccagagggaagactaggagaagctccccggcctgaacttcgtgaacatgggcgaatttctggtgcttgttatgatgcagctcgtggaatcatacctggtctcaaggttagaggaacagactataagacaacagatggtacatgcattagggattatatagatgtcactgatctggttgatgctcatgtgaaagctcttgaaaagtctaggcctgggaaggtgggaatctacaatgttggaaccggaagaggtagatcagtgaaggaatttgtggaggcttgcaaggcagccactggagttcctatcaaagttgacttccttcctcgtcgccctggtgattatgcagaagtctttagtgatcctactaagataaaacttgaactgaactggacagcccaacacactgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="23600" stop="25472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23900" g_stop="23948" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23949" i_stop="24054" i_length="106">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24055" g_stop="24149" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="144" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24150" i_stop="24293" i_length="144">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24294" g_stop="24423" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="274" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24424" i_stop="24783" i_length="360">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24784" g_stop="24928" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="419" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24929" i_stop="25013" i_length="85">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25014" g_stop="25172" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="578" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E204259" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23900" e_stop="23948"/>
          <exon e_start="24055" e_stop="24149"/>
          <exon e_start="24294" e_stop="24423"/>
          <exon e_start="24784" e_stop="24928"/>
          <exon e_start="25014" e_stop="25172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATATGGAGAGCCTGAAAAGATGCCTATTACCGAAGAAACTCCACAGGTGGGGTGTAAAGGCCGTATTTACTTCTAGTATGCTAGAACCGTATGATTGCCTCTCTCTTATGTCAATGGTAAGCAACAGCTGAGAGTTTTTCGTCAAATTGCAGCTCCCTATTAATCCATATGGAAAAGCGAAGAAAATGGCAGAGGATATTATTTTGGATTTCCATAAGAACTCAAACATGGCTGTCATGATTTTGAGGTAGGTGTTCGATATGTCTTTGCTAATATACCCTTTCCCTTTGATCGATGGTTGAAACCTGAGTCATAACTATTGGTTGACTGGCTATGTCTAGCACAATTAGCATGGGTTAAATTAATGCTAAATTGTTTTCTGAAAATACAGGTACTTCAATGTGATTGGATCTGATCCAGAGGGAAGACTAGGAGAAGCTCCCCGGCCTGAACTTCGTGAACATGGGCGAATTTCTGGTGCTTGTTATGATGCAGCTCGTGGAATCATACCTGGTCTCAAGGTCAGCCAATAATAGCCATATCTATACTCGATGTATTTGCTATTTATCATCTATGTACTCGCGGTTGTTGAATTGTCAGAAGTCGCTTCATGCATGGAGCATTTCTAATATCTACCAGAAAATATCTGGTTCTTACGAGTGAAATTCATACAGATAAAGTTTATTGGCTACACTATTCTGATACCCAGTTGCCATTGTCACTCTTAATAACATGTAAAAGACAAACATTCCGCTGTTCTATCAGCAATTCTTCTAGTATGGGCTATGAGGGGGGGGGGGGGGGGGGATGGAATGTGTCAATGATAACATGAATAGTTATGATCTGCCCTCATCTCTGAGAGCCTTTGTTTCGTCGTGCAGGTTAGAGGAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAGGTAAGGCGTTCCTTCTTGTGTCATCATATGCAGTTTCTCACTTTGAGTCTAGTTCTCACTTTATTCTTTTGGTCTCTGAGAACAGGTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATC</genome_strand>
        <mrna_strand>GACATATGGAGAGCCTGAAAAGATGCCTATTACCGAAGAAACTCCACAG..........................................................................................................CTCCCTATTAATCCATATGGAAAAGCGAAGAAAATGGCAGAGGATATTATTTTGGATTTCCATAAGAACTCAAACATGGCTGTCATGATTTTGAG................................................................................................................................................GTACTTCAATGTGATTGGATCTGATCCAGAGGGAAGACTAGGAGAAGCTCCCCGGCCTGAACTTCGTGAACATGGGCGAATTTCTGGTGCTTGTTATGATGCAGCTCGTGGAATCATACCTGGTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................GTTAGAGGAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAG.....................................................................................GTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E602324" ref_strand="+" ref_description="SGN-E602324 [55301]">
      <seq>tccacagctccctattaatccatatggaaaagcgaagaaaatggcagaggatattattttggatttccataagaactcaaacatggctgtcatgattttgaggtacttcaatgtgattggatctgatccagagggaagactaggagaagctccccggcctgaacttcgtgaacatgggagaatttctggtgcttgttatgatgcagctcgtggaatcttacctgatcttaaggttagaggaacagactataagacaacagatggtacatgcattagggattatatagatgtcactgatctggttgatgctcatgtgaaagctcttgaaaagtctaggcccgggaaggtgggaatctacaacgttggaactggaagaggtagatcagtgaaggaatttgtggaggcttgcaaggcagccactggagttcctatcaaagttgacttccttcctcgtcgacctggtgattatgcagaagtctttagtgatcctactaagataaaacttgaactgaactggacggccaaacacaccgatcttcaagagagtttgcaggtcgcatggagatggcagaaatcacaccttaatggttatggttcatctctggtcaagtcttcgtaattcattgacaacttatcgttgtggaagattgacatgaaccccatcacacagcttaacattgtcgtggatgttttagtgtcaccagagtaggttctggaagctaaagaggggtctatattttttcgttcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="23752" stop="25689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23942" g_stop="23948" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23949" i_stop="24054" i_length="106">
            <donor d_prob="0.804" d_score="0.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24055" g_stop="24149" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="102" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24150" i_stop="24293" i_length="144">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24294" g_stop="24423" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="232" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24424" i_stop="24783" i_length="360">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24784" g_stop="24928" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="377" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24929" i_stop="25013" i_length="85">
            <donor d_prob="0.867" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25014" g_stop="25389" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="752" r_length="375" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E602324" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E602324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23942" e_stop="23948"/>
          <exon e_start="24055" e_stop="24149"/>
          <exon e_start="24294" e_stop="24423"/>
          <exon e_start="24784" e_stop="24928"/>
          <exon e_start="25014" e_stop="25389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACAGGTGGGGTGTAAAGGCCGTATTTACTTCTAGTATGCTAGAACCGTATGATTGCCTCTCTCTTATGTCAATGGTAAGCAACAGCTGAGAGTTTTTCGTCAAATTGCAGCTCCCTATTAATCCATATGGAAAAGCGAAGAAAATGGCAGAGGATATTATTTTGGATTTCCATAAGAACTCAAACATGGCTGTCATGATTTTGAGGTAGGTGTTCGATATGTCTTTGCTAATATACCCTTTCCCTTTGATCGATGGTTGAAACCTGAGTCATAACTATTGGTTGACTGGCTATGTCTAGCACAATTAGCATGGGTTAAATTAATGCTAAATTGTTTTCTGAAAATACAGGTACTTCAATGTGATTGGATCTGATCCAGAGGGAAGACTAGGAGAAGCTCCCCGGCCTGAACTTCGTGAACATGGGCGAATTTCTGGTGCTTGTTATGATGCAGCTCGTGGAATCATACCTGGTCTCAAGGTCAGCCAATAATAGCCATATCTATACTCGATGTATTTGCTATTTATCATCTATGTACTCGCGGTTGTTGAATTGTCAGAAGTCGCTTCATGCATGGAGCATTTCTAATATCTACCAGAAAATATCTGGTTCTTACGAGTGAAATTCATACAGATAAAGTTTATTGGCTACACTATTCTGATACCCAGTTGCCATTGTCACTCTTAATAACATGTAAAAGACAAACATTCCGCTGTTCTATCAGCAATTCTTCTAGTATGGGCTATGAGGGGGGGGGGGGGGGGGGATGGAATGTGTCAATGATAACATGAATAGTTATGATCTGCCCTCATCTCTGAGAGCCTTTGTTTCGTCGTGCAGGTTAGAGGAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAGGTAAGGCGTTCCTTCTTGTGTCATCATATGCAGTTTCTCACTTTGAGTCTAGTTCTCACTTTATTCTTTTGGTCTCTGAGAACAGGTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTCGTGGAT-TTTTAGTATTGCTAGAGTAGTTTTTTTGGAAGCGAAAGAGGGGTCTATATTTTTTCGTTCATCTA</genome_strand>
        <mrna_strand>TCCACAG..........................................................................................................CTCCCTATTAATCCATATGGAAAAGCGAAGAAAATGGCAGAGGATATTATTTTGGATTTCCATAAGAACTCAAACATGGCTGTCATGATTTTGAG................................................................................................................................................GTACTTCAATGTGATTGGATCTGATCCAGAGGGAAGACTAGGAGAAGCTCCCCGGCCTGAACTTCGTGAACATGGGAGAATTTCTGGTGCTTGTTATGATGCAGCTCGTGGAATCTTACCTGATCTTAAG........................................................................................................................................................................................................................................................................................................................................................................GTTAGAGGAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCCGGGAAGGTGGGAATCTACAACGTTGGAACTGGAAGAG.....................................................................................GTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGACCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACGGCCAAACACACCGATCTTCAAGAGAGTTTGCAGGTCGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATTCATTGACAACTTATCGTTGTGGAAGATTGACATGAACCCCATCACACAGCTTAACATTGTCGTGGATGTTTTAGTGTCACCAGAGTAG--GTTCTGGAAGCTAAAGAGGGGTCTATATTTTTTCGTTCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205229" ref_strand="+" ref_description="SGN-E205229 [cLEC-16-N8]">
      <seq>gaaaagcgaagaaaatggcagaggatattattttggatttccataagaactcaaacatggctgtcatgattttgaggtacttcaatgtgattggatctgatccagagggaagactaggagaagctccccggcctgaacttcgtgaacatgggcgaatttctggtgcttgttatgatgcagctcgtggaatcatacctggtctcaaggttagaggaacagactataagacaacagatggtacatgcattagggattatatagatgtcactgatctggttgatgctcatgtgaaagctcttgaaaagtctaggcctgggaaggtgggaatctacaatgttggaaccggaagaggtagatcagtgaaggaatttgtggaggcttgcaaggcagccactggagttcctatcaaagttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="23774" stop="25379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24074" g_stop="24149" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24150" i_stop="24293" i_length="144">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24294" g_stop="24423" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="206" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24424" i_stop="24783" i_length="360">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24784" g_stop="24928" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="351" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24929" i_stop="25013" i_length="85">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25014" g_stop="25079" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="417" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E205229" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24074" e_stop="24149"/>
          <exon e_start="24294" e_stop="24423"/>
          <exon e_start="24784" e_stop="24928"/>
          <exon e_start="25014" e_stop="25079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCGAAGAAAATGGCAGAGGATATTATTTTGGATTTCCATAAGAACTCAAACATGGCTGTCATGATTTTGAGGTAGGTGTTCGATATGTCTTTGCTAATATACCCTTTCCCTTTGATCGATGGTTGAAACCTGAGTCATAACTATTGGTTGACTGGCTATGTCTAGCACAATTAGCATGGGTTAAATTAATGCTAAATTGTTTTCTGAAAATACAGGTACTTCAATGTGATTGGATCTGATCCAGAGGGAAGACTAGGAGAAGCTCCCCGGCCTGAACTTCGTGAACATGGGCGAATTTCTGGTGCTTGTTATGATGCAGCTCGTGGAATCATACCTGGTCTCAAGGTCAGCCAATAATAGCCATATCTATACTCGATGTATTTGCTATTTATCATCTATGTACTCGCGGTTGTTGAATTGTCAGAAGTCGCTTCATGCATGGAGCATTTCTAATATCTACCAGAAAATATCTGGTTCTTACGAGTGAAATTCATACAGATAAAGTTTATTGGCTACACTATTCTGATACCCAGTTGCCATTGTCACTCTTAATAACATGTAAAAGACAAACATTCCGCTGTTCTATCAGCAATTCTTCTAGTATGGGCTATGAGGGGGGGGGGGGGGGGGGATGGAATGTGTCAATGATAACATGAATAGTTATGATCTGCCCTCATCTCTGAGAGCCTTTGTTTCGTCGTGCAGGTTAGAGGAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAGGTAAGGCGTTCCTTCTTGTGTCATCATATGCAGTTTCTCACTTTGAGTCTAGTTCTCACTTTATTCTTTTGGTCTCTGAGAACAGGTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACT</genome_strand>
        <mrna_strand>GAAAAGCGAAGAAAATGGCAGAGGATATTATTTTGGATTTCCATAAGAACTCAAACATGGCTGTCATGATTTTGAG................................................................................................................................................GTACTTCAATGTGATTGGATCTGATCCAGAGGGAAGACTAGGAGAAGCTCCCCGGCCTGAACTTCGTGAACATGGGCGAATTTCTGGTGCTTGTTATGATGCAGCTCGTGGAATCATACCTGGTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................GTTAGAGGAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAG.....................................................................................GTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E617945" ref_strand="+" ref_description="SGN-E617945 [68618]">
      <seq>tgaggtacttcaatgtgattggatctgatccagaaggggaaagactaggagaagctccccggcctgaacttcgtgaacatgggagaatttctggtgcttgttatgatgcagctcgtggaatcttacctgatcttaaggttagaggaacagactataagacaacagatggtacatgcattagggattatatagatgtcactgatctggttgatgctcatgtgaaagctcttgaaaagtctaggcccgggaaggtgggaatctacaacgttggaactggaagaggtagatcagtgaaggaatttgtggaggcttgcaaggcagccactggagttcctatcaaagttgacttccttcctcgtcgacctggtgattatgcagaagtctttagtgatcctactaagataaaacttgaactgaactggacggccaaacacaccgatcttcaagagagtttgcaggtcgcatggagatggcagaaatcacaccttaatggttatggttcatctctggtcaagtcttcgtaattcattgacaacttatcgttgtggaagattgacatgaaccccatcacacaggttaacattgtcgtggatgttttagtgtcaccagagtaggtttttggaagctaaagaggggtctatatattttcgttcatctagattgaataccttaacagagttgtgtattagtcaggctatttatccagtcatttatgatgtgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="23992" stop="25756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24146" g_stop="24149" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24150" i_stop="24293" i_length="144">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24294" g_stop="24423" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="137" r_length="133" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24424" i_stop="24783" i_length="360">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24784" g_stop="24928" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="282" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24929" i_stop="25013" i_length="85">
            <donor d_prob="0.867" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25014" g_stop="25456" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="723" r_length="441" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E617945" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E617945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24146" e_stop="24149"/>
          <exon e_start="24294" e_stop="24423"/>
          <exon e_start="24784" e_stop="24928"/>
          <exon e_start="25014" e_stop="25456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGTAGGTGTTCGATATGTCTTTGCTAATATACCCTTTCCCTTTGATCGATGGTTGAAACCTGAGTCATAACTATTGGTTGACTGGCTATGTCTAGCACAATTAGCATGGGTTAAATTAATGCTAAATTGTTTTCTGAAAATACAGGTACTTCAATGTGATTGGATCTGATCCAGA--GGG-AAGACTAGGAGAAGCTCCCCGGCCTGAACTTCGTGAACATGGGCGAATTTCTGGTGCTTGTTATGATGCAGCTCGTGGAATCATACCTGGTCTCAAGGTCAGCCAATAATAGCCATATCTATACTCGATGTATTTGCTATTTATCATCTATGTACTCGCGGTTGTTGAATTGTCAGAAGTCGCTTCATGCATGGAGCATTTCTAATATCTACCAGAAAATATCTGGTTCTTACGAGTGAAATTCATACAGATAAAGTTTATTGGCTACACTATTCTGATACCCAGTTGCCATTGTCACTCTTAATAACATGTAAAAGACAAACATTCCGCTGTTCTATCAGCAATTCTTCTAGTATGGGCTATGAGGGGGGGGGGGGGGGGGGATGGAATGTGTCAATGATAACATGAATAGTTATGATCTGCCCTCATCTCTGAGAGCCTTTGTTTCGTCGTGCAGGTTAGAGGAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAGGTAAGGCGTTCCTTCTTGTGTCATCATATGCAGTTTCTCACTTTGAGTCTAGTTCTCACTTTATTCTTTTGGTCTCTGAGAACAGGTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTCGTGGAT-TTTTAGTATTGCTAGAGTAGTTTTTTTGGAAGCGAAAGAGGGGTCTATATTTTTTCGTTCATCTAGATTGAATTACATGACACAGTTTTGTGTATTAGTCAGCCTATTTATCCAGTCATATATGATGTGTAT</genome_strand>
        <mrna_strand>TGAG................................................................................................................................................GTACTTCAATGTGATTGGATCTGATCCAGAAGGGGAAAGACTAGGAGAAGCTCCCCGGCCTGAACTTCGTGAACATGGGAGAATTTCTGGTGCTTGTTATGATGCAGCTCGTGGAATCTTACCTGATCTTAAG........................................................................................................................................................................................................................................................................................................................................................................GTTAGAGGAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCCGGGAAGGTGGGAATCTACAACGTTGGAACTGGAAGAG.....................................................................................GTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGACCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACGGCCAAACACACCGATCTTCAAGAGAGTTTGCAGGTCGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATTCATTGACAACTTATCGTTGTGGAAGATTGACATGAACCCCATCACACAGGTTAACATTGTCGTGGATGTTTTAGTGTCACCAGAGTAG-GTTTTTGGAAGCTAAAGAGGGGTCTATATATTTTCGTTCATCTAGATTGAA-TACCTTA-ACAGAGTTGTGTATTAGTCAGGCTATTTATCCAGTCATTTATGATGTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694243" ref_strand="+" ref_description="SGN-E694243 [LH_Ea03G17](-)">
      <seq>tcaatgtgattggatctgatccagagggaagactaggagaagctccccggcctgaacttcgtgaacatgggcgaatttctggtgcttgttatgatgcagctcgtggaatcatacctggtcttaaggttagaggaacagactataagacaacagatggtacatgcattagagattatatagatgtcactgatctggttgatgctcatgtgaaagctcttgaaaagtctaggcctgggaaggtgggaatttacaatgttggaaccggaagaggtagatcagtgaaggaatttgtggaggcttgcaaggcagccactggagttcctatcaaagttgacttccttcctcgtcgacctggtgattatgcagaagtcttcagtgatcctacaaagataaaacttgaactgaactggacagccaaacacaccgatcttcaagagagtttgcaggttgcatggagatggcagaaatcacaccttaatggttatggttcatctctggtcaagtcttcgtaatgcattgacaacttatcgttgtggaagattgacatgaaccccatcacacagcttaacattgtcgtggatttttagtattgctagagtagttttttggaagcgaaaaaggggtctatattttttcgttcatctagattgaattacatgacacagttttgtcatttgtgtattagtcagcctatttatccagtcatttatgatgtgtatcttagtgtagtaaaacatatatttagatcaataatagttctgggcaaggtatagcttcgtccctcatctatgctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="23999" stop="25831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24299" g_stop="24423" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24424" i_stop="24783" i_length="360">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24784" g_stop="24928" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="270" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24929" i_stop="25013" i_length="85">
            <donor d_prob="0.867" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25014" g_stop="25530" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="794" r_length="524" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="795" polyA_stop="811"/>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E694243" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24299" e_stop="24423"/>
          <exon e_start="24784" e_stop="24928"/>
          <exon e_start="25014" e_stop="25530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGTGATTGGATCTGATCCAGAGGGAAGACTAGGAGAAGCTCCCCGGCCTGAACTTCGTGAACATGGGCGAATTTCTGGTGCTTGTTATGATGCAGCTCGTGGAATCATACCTGGTCTCAAGGTCAGCCAATAATAGCCATATCTATACTCGATGTATTTGCTATTTATCATCTATGTACTCGCGGTTGTTGAATTGTCAGAAGTCGCTTCATGCATGGAGCATTTCTAATATCTACCAGAAAATATCTGGTTCTTACGAGTGAAATTCATACAGATAAAGTTTATTGGCTACACTATTCTGATACCCAGTTGCCATTGTCACTCTTAATAACATGTAAAAGACAAACATTCCGCTGTTCTATCAGCAATTCTTCTAGTATGGGCTATGAGGGGGGGGGGGGGGGGGGATGGAATGTGTCAATGATAACATGAATAGTTATGATCTGCCCTCATCTCTGAGAGCCTTTGTTTCGTCGTGCAGGTTAGAGGAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAGGTAAGGCGTTCCTTCTTGTGTCATCATATGCAGTTTCTCACTTTGAGTCTAGTTCTCACTTTATTCTTTTGGTCTCTGAGAACAGGTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTCGTGGATTTTTAGTATTGCTAGAGTAGTTTTTTTGGAAGCGAAAGAGGGGTCTATATTTTTTCGTTCATCTAGATTGAATTACATGACACA-----GT--TTTGTGTATTAGTCAGCCTATTTATCCAGTCATATATGATGTGTATCTTAGTCTAGTAAAACATATATTTAGATCAATAATAGTTCTGGGCCA-GTATAGCTTCGTCCCTCATCTATGCTC</genome_strand>
        <mrna_strand>TCAATGTGATTGGATCTGATCCAGAGGGAAGACTAGGAGAAGCTCCCCGGCCTGAACTTCGTGAACATGGGCGAATTTCTGGTGCTTGTTATGATGCAGCTCGTGGAATCATACCTGGTCTTAAG........................................................................................................................................................................................................................................................................................................................................................................GTTAGAGGAACAGACTATAAGACAACAGATGGTACATGCATTAGAGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATTTACAATGTTGGAACCGGAAGAG.....................................................................................GTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGACCTGGTGATTATGCAGAAGTCTTCAGTGATCCTACAAAGATAAAACTTGAACTGAACTGGACAGCCAAACACACCGATCTTCAAGAGAGTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATTGACATGAACCCCATCACACAGCTTAACATTGTCGTGGATTTTTAGTATTGCTAGAGTAG-TTTTTTGGAAGCGAAAAAGGGGTCTATATTTTTTCGTTCATCTAGATTGAATTACATGACACAGTTTTGTCATTTGTGTATTAGTCAGCCTATTTATCCAGTCATTTATGATGTGTATCTTAGTGTAGTAAAACATATATTTAGATCAATAATAGTTCTGGGCAAGGTATAGCTTCGTCCCTCATCTATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406526" ref_strand="+" ref_description="SGN-E406526 [PPI-4-G17]">
      <seq>actaggagaagctccccggcctgaacttcgtgaacatgggcgaatttctggtgcttgttatgatgcagctcgtggaatcatacctgatcttaaggttagaggaacagactataagactacagatggtacatgcattagggattatatagatgtcactgatctggttgatgctcatgtgaaagctcttgaaaagtctagtcccgggaaggtgggaatctacaacgttggaaccggaagaggtagatcagtgaaggaatttgtggatgcttgcaaggcagccactggagttcctatcaaagttgacttccttcctcgtcgacctggtgattatgcagaagtctttagtgatcctacgaagataaaacttgaactgaactggacagccaaacacaccgatcttcaagagagtttgcaggtcgcatggagatggcagaaatcacaccttaatggttatggttcatctctggtcaagtcttcgtaattcattgacaacttatcattgtggaagattgacatgaaccccatcacacagcttaacattgtcgtggattttttagtgtcaccagagtaagttttttgaagctaaagagggtctatattttttcgttcatctagattgaatacataac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="24030" stop="25705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24330" g_stop="24423" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24424" i_stop="24783" i_length="360">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.940" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24784" g_stop="24928" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="239" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24929" i_stop="25013" i_length="85">
            <donor d_prob="0.867" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25014" g_stop="25405" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="629" r_length="390" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E406526" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24330" e_stop="24423"/>
          <exon e_start="24784" e_stop="24928"/>
          <exon e_start="25014" e_stop="25405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGGAGAAGCTCCCCGGCCTGAACTTCGTGAACATGGGCGAATTTCTGGTGCTTGTTATGATGCAGCTCGTGGAATCATACCTGGTCTCAAGGTCAGCCAATAATAGCCATATCTATACTCGATGTATTTGCTATTTATCATCTATGTACTCGCGGTTGTTGAATTGTCAGAAGTCGCTTCATGCATGGAGCATTTCTAATATCTACCAGAAAATATCTGGTTCTTACGAGTGAAATTCATACAGATAAAGTTTATTGGCTACACTATTCTGATACCCAGTTGCCATTGTCACTCTTAATAACATGTAAAAGACAAACATTCCGCTGTTCTATCAGCAATTCTTCTAGTATGGGCTATGAGGGGGGGGGGGGGGGGGGATGGAATGTGTCAATGATAACATGAATAGTTATGATCTGCCCTCATCTCTGAGAGCCTTTGTTTCGTCGTGCAGGTTAGAGGAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAGGTAAGGCGTTCCTTCTTGTGTCATCATATGCAGTTTCTCACTTTGAGTCTAGTTCTCACTTTATTCTTTTGGTCTCTGAGAACAGGTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTCGTGGA-TTTTTAGTATTGCTAGAGTAGTTTTTTTGGAAGCGAAAGAGGGGTCTATATTTTTTCGTTCATCTAGATTGAATTACATGAC</genome_strand>
        <mrna_strand>ACTAGGAGAAGCTCCCCGGCCTGAACTTCGTGAACATGGGCGAATTTCTGGTGCTTGTTATGATGCAGCTCGTGGAATCATACCTGATCTTAAG........................................................................................................................................................................................................................................................................................................................................................................GTTAGAGGAACAGACTATAAGACTACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGTCCCGGGAAGGTGGGAATCTACAACGTTGGAACCGGAAGAG.....................................................................................GTAGATCAGTGAAGGAATTTGTGGATGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGACCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACGAAGATAAAACTTGAACTGAACTGGACAGCCAAACACACCGATCTTCAAGAGAGTTTGCAGGTCGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATTCATTGACAACTTATCATTGTGGAAGATTGACATGAACCCCATCACACAGCTTAACATTGTCGTGGATTTTTTAGTGTCACCAGAGTAAGTTTTTT-GAAGCTAAAGA-GGGTCTATATTTTTTCGTTCATCTAGATTGAA-TACATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409666" ref_strand="+" ref_description="SGN-E409666 [PPI-14-B10]">
      <seq>actaggagaagctccccggcctgaacttcgtgaacatgggcgaatttctggtgcttgttatgatgcagctcgtggaatcatacctgatcttaaggttagaggaacagactataagactacagatggtacatgcattagggattatatagatgtcactgatctggttgatgctcatgtgaaagctcttgaaaagtctagtcccgggaaggtgggaatctacaacgttggaaccggaagaggtagatcagtgaaggaatttgtggatgcttgcaaggcagccactggagttcctatcaaagttgacttccttcctcgtcgacctggtgattatgcagaagtctttagtgatcctacgaagataaaacttgaactgaactggacagccaaacacaccgatcttcaagagagtttgcaggtcgcatggagatggcagaaatcacaccttaatggttatggttcatctctggtcaagtcttcgtaattcattgacaacttatcattgtggaagattgacatgaaccccatcacacagcttaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="24030" stop="25615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24330" g_stop="24423" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24424" i_stop="24783" i_length="360">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.940" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24784" g_stop="24928" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="239" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24929" i_stop="25013" i_length="85">
            <donor d_prob="0.867" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25014" g_stop="25315" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="541" r_length="302" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E409666" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24330" e_stop="24423"/>
          <exon e_start="24784" e_stop="24928"/>
          <exon e_start="25014" e_stop="25315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGGAGAAGCTCCCCGGCCTGAACTTCGTGAACATGGGCGAATTTCTGGTGCTTGTTATGATGCAGCTCGTGGAATCATACCTGGTCTCAAGGTCAGCCAATAATAGCCATATCTATACTCGATGTATTTGCTATTTATCATCTATGTACTCGCGGTTGTTGAATTGTCAGAAGTCGCTTCATGCATGGAGCATTTCTAATATCTACCAGAAAATATCTGGTTCTTACGAGTGAAATTCATACAGATAAAGTTTATTGGCTACACTATTCTGATACCCAGTTGCCATTGTCACTCTTAATAACATGTAAAAGACAAACATTCCGCTGTTCTATCAGCAATTCTTCTAGTATGGGCTATGAGGGGGGGGGGGGGGGGGGATGGAATGTGTCAATGATAACATGAATAGTTATGATCTGCCCTCATCTCTGAGAGCCTTTGTTTCGTCGTGCAGGTTAGAGGAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAGGTAAGGCGTTCCTTCTTGTGTCATCATATGCAGTTTCTCACTTTGAGTCTAGTTCTCACTTTATTCTTTTGGTCTCTGAGAACAGGTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATT</genome_strand>
        <mrna_strand>ACTAGGAGAAGCTCCCCGGCCTGAACTTCGTGAACATGGGCGAATTTCTGGTGCTTGTTATGATGCAGCTCGTGGAATCATACCTGATCTTAAG........................................................................................................................................................................................................................................................................................................................................................................GTTAGAGGAACAGACTATAAGACTACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGTCCCGGGAAGGTGGGAATCTACAACGTTGGAACCGGAAGAG.....................................................................................GTAGATCAGTGAAGGAATTTGTGGATGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGACCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACGAAGATAAAACTTGAACTGAACTGGACAGCCAAACACACCGATCTTCAAGAGAGTTTGCAGGTCGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATTCATTGACAACTTATCATTGTGGAAGATTGACATGAACCCCATCACACAGCTTAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370639" ref_strand="+" ref_description="SGN-E370639 [TUS-27-G12](-)">
      <seq>gcttgttatgatgcagctcgtgaaatcatacctggtctcaaggttagaggaacagactataagacaacagatggtacatgcattagggattatatagatgtcactgatctggttgatgctcatgtgaaagctcttgaaaagtctaggcctgggaaggtgggaatctacaatgttggaaccggaagaggtagatcagtgaaggaatttgtggaggcttgcaaggcagccactggagttcctatcaaagttgacttccttcctcgtcgccctggtgattatgcagaagtctttagtgatcctactaagataaaacttgaactgaactggacagcccaacacactgatcttcaagagagtttgcaggttgcatggagatggcagaaatcacaccttaatggttatggttcatctctggtcaagtcttcgtaatgcattgacaacttatcgttgtggaagatcgacatgaaccccatcacacagcttaacattgtcgtggatttttagtattgctagagtagtttttttggaagcgaaagaggggtctatattttttcgttcatctagattgaattacatgacacagttttgtgtattagtcagcctatttatccagtcatatatgatgtgtatcttagtctagtaaaacatatatttagatcaataatagttctgggccagtatagcttcgtccctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="24082" stop="25821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24382" g_stop="24423" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24424" i_stop="24783" i_length="360">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24784" g_stop="24928" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="187" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24929" i_stop="25013" i_length="85">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25014" g_stop="25520" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="695" polyA_stop="705"/>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E370639" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24382" e_stop="24423"/>
          <exon e_start="24784" e_stop="24928"/>
          <exon e_start="25014" e_stop="25520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTTATGATGCAGCTCGTGGAATCATACCTGGTCTCAAGGTCAGCCAATAATAGCCATATCTATACTCGATGTATTTGCTATTTATCATCTATGTACTCGCGGTTGTTGAATTGTCAGAAGTCGCTTCATGCATGGAGCATTTCTAATATCTACCAGAAAATATCTGGTTCTTACGAGTGAAATTCATACAGATAAAGTTTATTGGCTACACTATTCTGATACCCAGTTGCCATTGTCACTCTTAATAACATGTAAAAGACAAACATTCCGCTGTTCTATCAGCAATTCTTCTAGTATGGGCTATGAGGGGGGGGGGGGGGGGGGATGGAATGTGTCAATGATAACATGAATAGTTATGATCTGCCCTCATCTCTGAGAGCCTTTGTTTCGTCGTGCAGGTTAGAGGAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAGGTAAGGCGTTCCTTCTTGTGTCATCATATGCAGTTTCTCACTTTGAGTCTAGTTCTCACTTTATTCTTTTGGTCTCTGAGAACAGGTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTCGTGGATTTTTAGTATTGCTAGAGTAGTTTTTTTGGAAGCGAAAGAGGGGTCTATATTTTTTCGTTCATCTAGATTGAATTACATGACACAGTTTTGTGTATTAGTCAGCCTATTTATCCAGTCATATATGATGTGTATCTTAGTCTAGTAAAACATATATTTAGATCAATAATAGTTCTGGGCCAGTATAGCTTCGTCCCTC</genome_strand>
        <mrna_strand>GCTTGTTATGATGCAGCTCGTGAAATCATACCTGGTCTCAAG........................................................................................................................................................................................................................................................................................................................................................................GTTAGAGGAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAG.....................................................................................GTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTCGTGGATTTTTAGTATTGCTAGAGTAGTTTTTTTGGAAGCGAAAGAGGGGTCTATATTTTTTCGTTCATCTAGATTGAATTACATGACACAGTTTTGTGTATTAGTCAGCCTATTTATCCAGTCATATATGATGTGTATCTTAGTCTAGTAAAACATATATTTAGATCAATAATAGTTCTGGGCCAGTATAGCTTCGTCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E424726" ref_strand="-" ref_description="SGN-E424726 [STM-44-C7]">
      <seq>ttgtcatgcaggttagaggaacagactataagacaacagatggtacatgcattagggattatatagatgtcactgatctggttgatgctcatgtgaaagctcttgaaaagtctaggcccgggaaggtgggaatctacaacgttggaactggaagaggtagatcagtgaaggaatttgtggaggcttgcaaggcagccactggagttcctatcaaagttgacttccttcctcgtcgacctggtgattatgcagaagtctttagtgatcctactaagataaaacttgaactgaactggacggccaaacacaccgatcttcaagagagtttgcaggtcgcatggagatggcagaaatcacaccttaatggttatggttcatctctggtcaagtcttcgtaattcattgacaacttatcgttgtggaagattgacatgaaccccatcacacagcttaacattgtcgtggatgttttagtgtcaccagagtaggtttttggaagctaaagaggggtctatattttttcgttcatctagattgaatacataacagagttgtgtattagtcagcctatttatccagtcatttatgatgtgtatcttagtctagtaaaacagatatttagatcaataatagttctgggccaggtatagcttcttccctcgtaagtgctcatttgaattaaaaaatttggtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="24472" stop="25822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24773" g_stop="24928" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24929" i_stop="25013" i_length="85">
            <donor d_prob="0.867" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25014" g_stop="25540" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="681" r_length="525" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E424726" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424726" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24773" e_stop="24928"/>
          <exon e_start="25014" e_stop="25540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCGTGCAGGTTAGAGGAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAGGTAAGGCGTTCCTTCTTGTGTCATCATATGCAGTTTCTCACTTTGAGTCTAGTTCTCACTTTATTCTTTTGGTCTCTGAGAACAGGTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTCGTGGAT-TTTTAGTATTGCTAGAGTAGTTTTTTTGGAAGCGAAAGAGGGGTCTATATTTTTTCGTTCATCTAGATTGAATTACATGACACAGTTTTGTGTATTAGTCAGCCTATTTATCCAGTCATATATGATGTGTATCTTAGTCTAGTAAAACATATATTTAGATCAATAATAGTTCTGGGCCA-GTATAGCTTCGTCCCTCATCTATGCTCATTTGAATTT</genome_strand>
        <mrna_strand>TTGTCATGCAGGTTAGAGGAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCCGGGAAGGTGGGAATCTACAACGTTGGAACTGGAAGAG.....................................................................................GTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGACCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACGGCCAAACACACCGATCTTCAAGAGAGTTTGCAGGTCGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATTCATTGACAACTTATCGTTGTGGAAGATTGACATGAACCCCATCACACAGCTTAACATTGTCGTGGATGTTTTAGTGTCACCAGAGTAG-GTTTTTGGAAGCTAAAGAGGGGTCTATATTTTTTCGTTCATCTAGATTGAA-TACAT-A-ACAGAGTTGTGTATTAGTCAGCCTATTTATCCAGTCATTTATGATGTGTATCTTAGTCTAGTAAAACAGATATTTAGATCAATAATAGTTCTGGGCCAGGTATAGCTTCTTCCCTCGTAAGTGCTCATTTGAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353539" ref_strand="+" ref_description="SGN-E353539 [cTOS-15-B23]">
      <seq>gaacagactataagacaacagatggtacatgcattagggattatatagatgtcactgatctggttgatgctcatgtgaaagctcttgaaaagtctaggcctgggaaggtgggaatctacaatgttggaaccggaagaggtagatcagtgaaggaatttgtggaggcttgcaaggcagccactggagttcctatcaaagttgacttccttcctcgtcgccctggtgattatgcagaagtctttagtgatcctactaagataaaacttgaactgaactggacagcccaacacactgatcttcaagagagtttgcaggttgcatggagatggcagaaatcacaccttaatggttatggttcatctctggtcaagtcttcgtaatgcattgacaacttatcgttgtggaagatcgacatgaaccccatcacacagcttaacattgtcgtggatttttagtattgctagagtagtttttttggaagcgaaagaggggtctatattttttcgttcatctagattgaattacatgacacagttttgtgtattagtcagcctatttatccagtcatatatgatgtgtatcttagtctagtaaaacatatatttagatccataatagttctgggccagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="24491" stop="25808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24791" g_stop="24928" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24929" i_stop="25013" i_length="85">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25014" g_stop="25508" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="633" r_length="495" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25509" i_stop="25568" i_length="60">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.675" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25569" g_stop="25574" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="639" r_length="6" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E353539" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24791" e_stop="24928"/>
          <exon e_start="25014" e_stop="25508"/>
          <exon e_start="25569" e_stop="25574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAGGTAAGGCGTTCCTTCTTGTGTCATCATATGCAGTTTCTCACTTTGAGTCTAGTTCTCACTTTATTCTTTTGGTCTCTGAGAACAGGTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTCGTGGATTTTTAGTATTGCTAGAGTAGTTTTTTTGGAAGCGAAAGAGGGGTCTATATTTTTTCGTTCATCTAGATTGAATTACATGACACAGTTTTGTGTATTAGTCAGCCTATTTATCCAGTCATATATGATGTGTATCTTAGTCTAGTAAAACATATATTTAGATCAATAATAGTTCTGGGCCAGTATAGCTTCGTCCCTCATCTATGCTCATTTGAATTTGTTGCGTGTTTATTCTTGATGTATATAGAAAACT</genome_strand>
        <mrna_strand>GAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAG.....................................................................................GTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTCGTGGATTTTTAGTATTGCTAGAGTAGTTTTTTTGGAAGCGAAAGAGGGGTCTATATTTTTTCGTTCATCTAGATTGAATTACATGACACAGTTTTGTGTATTAGTCAGCCTATTTATCCAGTCATATATGATGTGTATCTTAGTCTAGTAAAACATATATTTAGATCCATAATAGTTCTGGGCCAGTAAA............................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354550" ref_strand="+" ref_description="SGN-E354550 [cTOS-17-G2]">
      <seq>gaacagactataagacaacagatggtacatgcattagggattatatagatgtcactgatctggttgatgctcatgtgaaagctcttgaaaagtctaggcctgggaaggtgggaatctacaatgttggaaccggaagaggtagatcagtgaaggaatttgtggaggcttgcaaggcagccactggagttcctatcaaagttgacttccttcctcgtcgccctggtgattatgcagaagtctttagtgatcctactaagataaaacttgaactgaactggacagcccaacacactgatcttcaagagagtttgcaggttgcatggagatggcagaaatcacaccttaatgggtatggttcatctctgggcaagtcttcgtaatgcattgacaacttatcgttgtggaagatcgacatgaaccccctcacacagcttaacattgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="24491" stop="25618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24791" g_stop="24928" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24929" i_stop="25013" i_length="85">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25014" g_stop="25318" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="443" r_length="305" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E354550" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24791" e_stop="24928"/>
          <exon e_start="25014" e_stop="25318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAGGTAAGGCGTTCCTTCTTGTGTCATCATATGCAGTTTCTCACTTTGAGTCTAGTTCTCACTTTATTCTTTTGGTCTCTGAGAACAGGTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTC</genome_strand>
        <mrna_strand>GAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAG.....................................................................................GTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGGTATGGTTCATCTCTGGGCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCCTCACACAGCTTAACATTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391208" ref_strand="+" ref_description="SGN-E391208 [TUS-48-F9]">
      <seq>aacagactataagacaacagatggtacatgcattagggattatatagatgtcactgatctggttgatgctcatgtgaaagctcttgaaaagtctaggcctgggaaggtgggaatctacaatgttggaaccggaagaggtagatcagtgaaggaatttgtggaggcttgcaaggcagccactggagttcctatcaaagttgacttccttcctcgtcgccctggtgattatgcagaagtctttagtgatcctactaagataaaacttgaactgaactggacagcccaacacactgatcttcaagagagtttgcaggttgcatggagatggcagaaatcacaccttaatggttatggttcatctctggtcaagtcttcgtaatgcattgacaacttatcgttgtggaagatcgacatgaaccccatcacacagcttaacattgtcgtggatttttagtattgctagagtagtttttttggaagcgaaagaggggtctatatttttttcgttcatctagattgaattacatgacccagttttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="24492" stop="25716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24792" g_stop="24928" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24929" i_stop="25013" i_length="85">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25014" g_stop="25416" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="541" r_length="404" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E391208" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24792" e_stop="24928"/>
          <exon e_start="25014" e_stop="25416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAGGTAAGGCGTTCCTTCTTGTGTCATCATATGCAGTTTCTCACTTTGAGTCTAGTTCTCACTTTATTCTTTTGGTCTCTGAGAACAGGTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTCGTGGATTTTTAGTATTGCTAGAGTAGTTTTTTTGGAAGCGAAAGAGGGGTCTATA-TTTTTTCGTTCATCTAGATTGAATTACATGACACAGTTTTGTG</genome_strand>
        <mrna_strand>AACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAG.....................................................................................GTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTCGTGGATTTTTAGTATTGCTAGAGTAGTTTTTTTGGAAGCGAAAGAGGGGTCTATATTTTTTTCGTTCATCTAGATTGAATTACATGACCCAGTTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237773" ref_strand="+" ref_description="SGN-E237773 [cLED-18-C9]">
      <seq>agactataagacaacagatggtacatgcattagggattatatcgatgtcactgatctggatgatgctcatgtgaaagctcttgaaaagtctatgcctgggaaggtgggaatctacaatgttggaaccggaagaggtagatcagtgaaggaatttgtggaggcttgcaaggcagccactgaagttcctatcaaagttgacttccttcctcgtcgccctggtgattatgcacaagtctttagtgatcctactaagataaaacttgaactgaactggacagcccaacacactgatcttcaagagagtttgcaggtttgcatggagatggcagaaatcacaaccttaatggttatggttcatctctggtcaagtcttcgcaatgcattgacaacttatcgttgtgaaagatcgacatgaaccccatcacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="24495" stop="25604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24795" g_stop="24928" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24929" i_stop="25013" i_length="85">
            <donor d_prob="0.867" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25014" g_stop="25304" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="427" r_length="293" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E237773" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24795" e_stop="24928"/>
          <exon e_start="25014" e_stop="25304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAGGTAAGGCGTTCCTTCTTGTGTCATCATATGCAGTTTCTCACTTTGAGTCTAGTTCTCACTTTATTCTTTTGGTCTCTGAGAACAGGTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGG-TTGCATGGAGATGGCAGAAATCAC-ACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACAC</genome_strand>
        <mrna_strand>AGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATCGATGTCACTGATCTGGATGATGCTCATGTGAAAGCTCTTGAAAAGTCTATGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAG.....................................................................................GTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGAAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCACAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGGTTTGCATGGAGATGGCAGAAATCACAACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGCAATGCATTGACAACTTATCGTTGTGAAAGATCGACATGAACCCCATCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391387" ref_strand="+" ref_description="SGN-E391387 [TUS-48-F9](-)">
      <seq>gtagatcagtgaaggaattttggggaggcttgcaaggcagccactggagtttcctatcaaagttgacttccttcctcgtcgccctggtgattatgcagaagtctttagtgatcctactaagataaaacttgaactgaactggacagcccaacacactgatcttcaagagagtttgcaggttgcatggagatggcagaaatcacaccttaatggttatggttcatctctggtcaagtcttcgtaatgcattgacaacttatcgttgtggaagatcgacatgaaccccatcacacagcttaacattgtcgtggatttttagtattgctagagtagtttttttggaagcgaaagaggggtctatattttttcgttcatctagattgaattacatgacacagttttgtgtattagtcagcctatttatccagtcatatatgatgtgtatcttagtctagtaaaacatatatttagatcaataatagttctgggccagtatagcttcgtccctcatctatgctcatttgaatttgttgcgtgtttattcttgatgtatatagaaaactgggtgttataattgcctccacttttggagaaatggaagttgcttcgaccatatcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="24714" stop="25937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25014" g_stop="25629" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="619" polyA_stop="636"/>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E391387" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25014" e_stop="25629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGATCAGTGAAGGAA-TTTGTGGAGGCTTGCAAGGCAGCCACTGGAG-TTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTCGTGGATTTTTAGTATTGCTAGAGTAGTTTTTTTGGAAGCGAAAGAGGGGTCTATATTTTTTCGTTCATCTAGATTGAATTACATGACACAGTTTTGTGTATTAGTCAGCCTATTTATCCAGTCATATATGATGTGTATCTTAGTCTAGTAAAACATATATTTAGATCAATAATAGTTCTGGGCCAGTATAGCTTCGTCCCTCATCTATGCTCATTTGAATTTGTTGCGTGTTTATTCTTGATGTATATAGAAAACTGGGTGTTATAATTGCCTCCACTTTTGGAGAAATGGAAGTTGCTTCGACCATATCA</genome_strand>
        <mrna_strand>GTAGATCAGTGAAGGAATTTTGGGGAGGCTTGCAAGGCAGCCACTGGAGTTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTCGTGGATTTTTAGTATTGCTAGAGTAGTTTTTTTGGAAGCGAAAGAGGGGTCTATATTTTTTCGTTCATCTAGATTGAATTACATGACACAGTTTTGTGTATTAGTCAGCCTATTTATCCAGTCATATATGATGTGTATCTTAGTCTAGTAAAACATATATTTAGATCAATAATAGTTCTGGGCCAGTATAGCTTCGTCCCTCATCTATGCTCATTTGAATTTGTTGCGTGTTTATTCTTGATGTATATAGAAAACTGGGTGTTATAATTGCCTCCACTTTTGGAGAAATGGAAGTTGCTTCGACCATATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454317" ref_strand="+" ref_description="SGN-E454317 [cSTS-22-J20]">
      <seq>tgtggaggcttgcaaggcagccactggagttcctatcaaagttgacttccttcctcgtcgacctggtgattatgcagaagtctttagtgatcctactaagataaaacttgaactgaactggacggccaaacacaccgatcttcaagagagtttgcaggtcgcatggagatggcagaaatcacaccttaatggttatggttcatctctggtcaagtcttcgtaattcattgacaacttatcgttgtggaagattgacatgaaccccatcacacagcttaacattgtcgtggatgttttagtgtcaccagagtaggtttttggaagctaaagaggggtctatattttttcgttcatctagattgaatacataacagagttgtgtattagtcagcctatttatccagtcatttatgatgtgtatcttagtctagtaaaacagatatttagatcaataatagttctgggccaggtntnnnaaanaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="24733" stop="25807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25033" g_stop="25503" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="477" polyA_stop="494"/>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E454317" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25033" e_stop="25503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTCGTGGAT-TTTTAGTATTGCTAGAGTAGTTTTTTTGGAAGCGAAAGAGGGGTCTATATTTTTTCGTTCATCTAGATTGAATTACATGACACAGTTTTGTGTATTAGTCAGCCTATTTATCCAGTCATATATGATGTGTATCTTAGTCTAGTAAAACATATATTTAGATCAATAATAGTTCTGGGCCA</genome_strand>
        <mrna_strand>TGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGACCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACGGCCAAACACACCGATCTTCAAGAGAGTTTGCAGGTCGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATTCATTGACAACTTATCGTTGTGGAAGATTGACATGAACCCCATCACACAGCTTAACATTGTCGTGGATGTTTTAGTGTCACCAGAGTAG-GTTTTTGGAAGCTAAAGAGGGGTCTATATTTTTTCGTTCATCTAGATTGAA-TACAT-A-ACAGAGTTGTGTATTAGTCAGCCTATTTATCCAGTCATTTATGATGTGTATCTTAGTCTAGTAAAACAGATATTTAGATCAATAATAGTTCTGGGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542954" ref_strand="+" ref_description="SGN-E542954 [TUS-64-I9](-)">
      <seq>aagataaaacttgaactgaactggacagcccaacacactgatcttcaagagagttcccaggttgcatggagatggcagaaatcaccccttaatggttatggttcatctctggtcaagtcttggtaatgcattgacaacttatcgttgtggaagatcgacatgaaccccatcacacagcttaacattgtcgtggatttttagtatggctagagtagtttttttggaagcgaaagaggggtctatattttttcgttcatctagattgaattacatgacacagttttgtgtattagtcagcctatttatccagtcatatatgatgtgtatcttagtctagtaaaacatatatttagatcaataatagttctgggccagtatagcttcgtccctcatctatgctcatttgaatttgttgcgtgtttattcttgatgcatatagaaaactgggtgttataattgcctccactttagaaaaaaataaaagtaaattaaaccaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="24830" stop="25913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25130" g_stop="25605" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="496" polyA_stop="517"/>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E542954" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25130" e_stop="25605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTCGTGGATTTTTAGTATTGCTAGAGTAGTTTTTTTGGAAGCGAAAGAGGGGTCTATATTTTTTCGTTCATCTAGATTGAATTACATGACACAGTTTTGTGTATTAGTCAGCCTATTTATCCAGTCATATATGATGTGTATCTTAGTCTAGTAAAACATATATTTAGATCAATAATAGTTCTGGGCCAGTATAGCTTCGTCCCTCATCTATGCTCATTTGAATTTGTTGCGTGTTTATTCTTGATGTATATAGAAAACTGGGTGTTATAATTGCCTCCACTTTTGGAGAA</genome_strand>
        <mrna_strand>AAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTCCCAGGTTGCATGGAGATGGCAGAAATCACCCCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTGGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTCGTGGATTTTTAGTATGGCTAGAGTAGTTTTTTTGGAAGCGAAAGAGGGGTCTATATTTTTTCGTTCATCTAGATTGAATTACATGACACAGTTTTGTGTATTAGTCAGCCTATTTATCCAGTCATATATGATGTGTATCTTAGTCTAGTAAAACATATATTTAGATCAATAATAGTTCTGGGCCAGTATAGCTTCGTCCCTCATCTATGCTCATTTGAATTTGTTGCGTGTTTATTCTTGATGCATATAGAAAACTGGGTGTTATAATTGCCTCCACTTTAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221128" ref_strand="+" ref_description="SGN-E221128 [cLEL-22-E8](-)">
      <seq>gtttgcaggttgcatggagatggcagaaatcacaccttaatggttatggttcatctctggtcaagtcttcgtaatgcattgacaacttatcgttgtggaagatcgacatgaaccccatcacacagcttaacattgtcgtggatttttagtattgctagagtagtttttttggaagcgaaagaggggtctatattttttcgttcatctagattgaattacatgacacagttttgtgtattagtcagcctatttatccagtcatatatgatgtgtatcttagtctagtaaaacatatatttagatcaataatagttctgggccagtatagcttcgtccctcatctatgctcatttgaatttgttgcgtgtttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="24882" stop="25852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25182" g_stop="25551" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="371" polyA_stop="387"/>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E221128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25182" e_stop="25551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTCGTGGATTTTTAGTATTGCTAGAGTAGTTTTTTTGGAAGCGAAAGAGGGGTCTATATTTTTTCGTTCATCTAGATTGAATTACATGACACAGTTTTGTGTATTAGTCAGCCTATTTATCCAGTCATATATGATGTGTATCTTAGTCTAGTAAAACATATATTTAGATCAATAATAGTTCTGGGCCAGTATAGCTTCGTCCCTCATCTATGCTCATTTGAATTTGTTGCGTGTTT</genome_strand>
        <mrna_strand>GTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTCGTGGATTTTTAGTATTGCTAGAGTAGTTTTTTTGGAAGCGAAAGAGGGGTCTATATTTTTTCGTTCATCTAGATTGAATTACATGACACAGTTTTGTGTATTAGTCAGCCTATTTATCCAGTCATATATGATGTGTATCTTAGTCTAGTAAAACATATATTTAGATCAATAATAGTTCTGGGCCAGTATAGCTTCGTCCCTCATCTATGCTCATTTGAATTTGTTGCGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220756" ref_strand="+" ref_description="SGN-E220756 [cLEL-22-E8](-)">
      <seq>gttgtggaagatcaacatgaaccccatcacacagcttaacattgtcgtggatttttagtattgctagagtagtttttttggaagcgaaaaaggggtctatattttttcgttcatctagattgaattacatgacgcagttttgtgtattagtcagcctatttatccagtcaaatattaatgtggatcttagtctagtaaagcatatatttagatcaataatagttctgggccagtatagcttcgtccctcatctatgctcatttgaatttgttgcgtgaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="24973" stop="25852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25273" g_stop="25547" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="278" polyA_stop="297"/>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E220756" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25273" e_stop="25547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTCGTGGATTTTTAGTATTGCTAGAGTAGTTTTTTTGGAAGCGAAAGAGGGGTCTATATTTTTTCGTTCATCTAGATTGAATTACATGACACAGTTTTGTGTATTAGTCAGCCTATTTATCCAGTCATATA-TGATGTGTATCTTAGTCTAGTAAAACATATATTTAGATCAATAATAGTTCTGGGCCAGTATAGCTTCGTCCCTCATCTATGCTCATTTGAATTTGTTGCGT</genome_strand>
        <mrna_strand>GTTGTGGAAGATCAACATGAACCCCATCACACAGCTTAACATTGTCGTGGATTTTTAGTATTGCTAGAGTAGTTTTTTTGGAAGCGAAAAAGGGGTCTATATTTTTTCGTTCATCTAGATTGAATTACATGACGCAGTTTTGTGTATTAGTCAGCCTATTTATCCAGTCAAATATTAATGTGGATCTTAGTCTAGTAAAGCATATATTTAGATCAATAATAGTTCTGGGCCAGTATAGCTTCGTCCCTCATCTATGCTCATTTGAATTTGTTGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420262" ref_strand="-" ref_description="SGN-E420262 [STM-30-P12]">
      <seq>tgcaaagcgtcacattcagatagtacttgactcctgcagggatggaaaggtggaattattgaaagctacatggaaggacttggctcgggctgatcgggttccaccagtgccactagtcaaagaaatgttccgcgtgcagctggaaagagggaacattgctgctgccctggcttgtgttactgattatcctcctgctgagtctcaggcattttctgccaagttttggatgaagcttttcgtggaaaattctgatcgattatcagatggtactcttttcagattgctacaagaggtgagccgggttgttgccagaaatgacagcagaatactcaacaatctgatggcttcttgtaaagaatttttgagaactcgatcgacaaaactagatagagttcacagtgaaacagctctagtttgttaactttgctacaccccaaatgaagaaaaaatcatcagatactgtatcatctgttcttgaacaagtgctctatttgttaagagttgagtcatgttcataaccaactattctttaatcagtataattatatttgaagtatagttcagcaaaaaaaaaaaaaagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="-" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="28054" stop="25471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27754" g_stop="27706" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27705" i_stop="26223" i_length="1483">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26222" g_stop="25705" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="570" r_length="521" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="-" ref_id="SGN-E420262" ref_strand="-">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420262" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27754" e_stop="27706"/>
          <exon e_start="26222" e_stop="25705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAAGCGTCACATTCAGATGGTACTTGACTCCTGCAGGGATGGAAAGGTACACTTTGTCAACCCAGTATTCAGCCTTTCATGTTCATTGGTTGTCATTCCTAGGAAATTCCCATATGAAATTTTATTTAGCTGATCATGGTGTAGACTGTCAAATTATTGTACAACTTTCTGTTTTGTTGAAATATAACTAGCTTTTCTTTAGAGAAAATATTTGAAAACTGATCCGCCCCCAATTTTCTGTAAATAATAAAACGATGTAACTTATGTGTCAAAAAGTAGTAGTATGAAACTTGTGCACAAAATTGAATCAGACCAGTACAATAAAACTAATTCTTTTCTTTCTATATTATAAAAACTAATTTGATCTCTTTATAGTCTGTTTAAGAAAAAAATTGTAAGTTCTTGCTATAATATGTGTCGATGATTTTGGGTAATAATAGAGATCAACACACCTAGGATTGTTACAGCAAAGAAAAGAAGCTTTTTTAATTAGTTTCATCCTTTAGCCAAGTCTTTCTTGCTCATACAATACCTCCGGATGTTTTTGTTTTCCTTCTGTGAGAACTATGAGTTATTTGTTTCCTCATGTACTTGCTGAAGTATAACTGATTAGTTGGGTAGTTCTTCACCGACCTAATTGGTATTATGGATGTGAAGATAAGAGCATGATCGTCAGCACTCGGAATTATTTTTGTTGGCTGAAGGAATTAAGAGGATGTTCTGGGATGGAAAATGCTGTCTTAACTTGTGGCCAACAAATTTCTTGCTGGAATGAGAAACCAGTGAACACAATGGGGTTTCTTTTGATTACCAGGGTGGCATACGTGGAGTTCAAATTGTTTTCAATTTGATGCCAGGTACTATGACAAGCCAATGGTCTGAGAGTTATCAGCTCATATGTCACGTACCTTTTGTGATTGTCTACCTACTGCTAGGAATAAAAAAAAAATAGAGAGAGGAGTGGTGGTTGGCACTCTCTTTTCCCTGTCAGTGCAGGACGCAGGGAAGTTTGAGTTAGAAGGTAGCTTGGGCTTGAGAAGATACTTTCTACTACATAAGGAGCTTGACTGGGTTGCTTGAGAAGCTTCCTGAATCTCTTTTTTCTTTTTTATACAGCTGCATCCCGTTTTCTAGTTCTGGAGTGAAATATTATGGTTTTTTAGTTTACTGGGAACACACCTCGAACTTCCCAATAATTTCCAAGGGTGCAACTACTATCCTTTTATCACTGTAGAGCACAACGTTGTGACCTAGTGGTCAGTAAAGACATCTATGAAGACAACATTAGGTGGTAATTCTTCCCATCTTTCTAAGCTTTTGGTGGTCTGAATACCACCTTTACAAAAATAAAAATAAAAACTATCCCTATTACCGAATGACAGTATCATTGGTTTGTCATATCGATCTTTTGGGCCAGTATACTAAAGTGAATCTAAGGTTGTTTTGGTTTTACTCTGACGATATCCCACTTTCATTTCTTTAGCTGATGATAGTTAAGAGTTATGACTATTCTACACGGACCTTTTCAGGTGGAATTATTGGAAGCAACATGGAAGGACTTGGCTCGGGCTGATCGGGTTCCACCAGTGCCACTAGTCAAAGAAATGTTCCGCATGCAGCTGGAAAGAGGGAACATTGCTGCTGCCCTGACTTGTGTTACTGATTATCCTCCTGCTGAGTCTCAGGCATTTTCTGCCAAGTTTTGGATGAAGTTTTTTGAGGAAAATTCTGATCAATTATCAGACGGTACGCTTTTCAGATTGCTACAAGAGGTGAGCCGGATTGTTGCCAGAAATGACAGCAAAATACTCAACAATCTAATGGCTTCTTGTAAAGAATTTTTGAGAACTCAATCGACAAAAGTAGATAGAGTTCATAGTGAAACAGCTCTAGTTTGTTAACTTTGCTACAGCCCAAAAGAAG-AAAAATCATCAGATACTG----ATCTGTTCTTGAACAAGTGCTCTATTTGTTAAGAGTTAAGAGTCAAGTTCATAATCAACTATTCTTT-ATCAGTATAATCATATTTGATTGTTTAGTTCAGCAAGAA</genome_strand>
        <mrna_strand>TGCAAAGCGTCACATTCAGATAGTACTTGACTCCTGCAGGGATGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATTATTGAAAGCTACATGGAAGGACTTGGCTCGGGCTGATCGGGTTCCACCAGTGCCACTAGTCAAAGAAATGTTCCGCGTGCAGCTGGAAAGAGGGAACATTGCTGCTGCCCTGGCTTGTGTTACTGATTATCCTCCTGCTGAGTCTCAGGCATTTTCTGCCAAGTTTTGGATGAAGCTTTTCGTGGAAAATTCTGATCGATTATCAGATGGTACTCTTTTCAGATTGCTACAAGAGGTGAGCCGGGTTGTTGCCAGAAATGACAGCAGAATACTCAACAATCTGATGGCTTCTTGTAAAGAATTTTTGAGAACTCGATCGACAAAACTAGATAGAGTTCACAGTGAAACAGCTCTAGTTTGTTAACTTTGCTACACCCCAAATGAAGAAAAAATCATCAGATACTGTATCATCTGTTCTTGAACAAGTGCTCTATTTGTTAAGAGTT--GAGTCATGTTCATAACCAACTATTCTTTAATCAGTATAATTATATTTGA-AGTATAGTTCAGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420261" ref_strand="+" ref_description="SGN-E420261 [STM-30-P12]">
      <seq>gtcatggaggttatgttcgaatgtggcaaatacaatttggtccatgactttttcaagaaaatgcagaagtcatgtgttcccaatgctttgacctataaagttattgtcagtactctttggaaggaagggaaaacagacgaggccttactgtctgtagaagacatggagcgacgaggaatcgtgggcactgccagtttgtattatgaccttgctcgttgcctttgcagtgcagggaggtgtgaagaggcgctgatgcaaatgggaaagatatgcaaagttgctaccaagcctctagtggtgacttacactggtctaattcaagcctgtctggattctggtgacattcagagtggagcatacatcttcaaccacatgcaccagttttgctccccaaatttgataacttacaatataatgctaaaaggttatctagatagtgggatgtttgaagaagcaaagcaaatgtttttcaagctattggataattgtaactctattagcagtaaattggatggtaaggataaggttttcccagatgtctacacattcaacttgatgttggatgcatgtgctgctggaaagaaatgggatgatctcaagtttgcctactcacatatgctgaaatatggataccacttcaatgcaaagcgtcacattcagatagtacttgacttctgcagggatggaaaggtggaattattggaagctacatggaaggacttggctcgggctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="-" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="30159" stop="25879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29860" g_stop="29761" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29760" i_stop="29685" i_length="76">
            <donor d_prob="0.401" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29684" g_stop="29527" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="258" r_length="158" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29526" i_stop="28138" i_length="1389">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28137" g_stop="27706" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="690" r_length="432" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27705" i_stop="26223" i_length="1483">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26222" g_stop="26179" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="734" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="-" ref_id="SGN-E420261" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29860" e_stop="29761"/>
          <exon e_start="29684" e_stop="29527"/>
          <exon e_start="28137" e_stop="27706"/>
          <exon e_start="26222" e_stop="26179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTCAGGTTATGTTCGAATGTGGCAAATACAATTTGGTTCATGACTTTTTCAAGAAAATGCAGAAGTCATGTGTTCCCAATGCTTTGACCTATAAAGGTAATGCAGAAACATGTGCTTGGTTGACATGCTGCAAGGAATTTTTGCTGAATCAAGTTTTCTTTGATGCGTGTAGTTATTGTGAGTACTCTTTGGAAGGAAGGGAAAACAGACGAGGCCTTACTGGCAGTAGAAGACATGGAGCGACGAGGAATCGTGGGCACTGCCAGTTTGTATTATGACCTTGCTCGTTGCCTTTGTAGTGCAGGGAGGTGTGAAGAGGCGCTGATGCAAGTACGTTTCTTGTAATAAGCTTCAATTGATCTTATTCTATTATGCAATTCTGTTTCCGGGCCCAATGATTTATCTTGAATATTCATATACGCTATTAGACATCAAATGAAAGGACGTCATCACGTTTCAGTAAAGTTGTTCCTTCATCAAAATATTTCATTATGTTTCTGACTATATAACATTTAGAAGCAAAATGCAATTGATACGAAGGTAGCATACATAAGTACGTGAATGTCCTGATTAAAAAGAACATAAGTACGTGAATGCAAATTCACTACTATTATTCTTTATATGAACTGCAAAAAAATAATCATAAGCTATCTGTAGGACTGCAAAAACACCCACAAGAAACCTAAGCTTGTACTCAATCCTCATATAATTCAAAATTCTAAGCACTGCTTGTCTGAAATTTTCTCAAGTATTTTATGTTTTCTGATTTGTTACTTCACTCATAGTTTGCTGAAGAGGTTAGTGCTCTTTTTGTTCATCAAGAATTTCATCTGTGTGCTAGGAGATCCTACTAAATTCATCCTTGAACAATCAATAACTGTGATGGAATGAAACTTCATCTCATACTTTTTCAAGTGAGTTAAATTAAAATTGTTACATTCATTTTCAACCGAGTGATATTCAGGACGTTGTTGTGCAGTTCAAATAACTGGTATTAGTTCTCTAGATTCCATGATCGTGTAGCACATGAAACTCTTGTTGATTTTGTCATCCATGAAACTGATTAGTCAAGCCCATTTTATGTGGACTTTTGAGCATCCCATATTTGGTGTTAGAGTGGGTAAAAGTCCCACATTGGTTGGGGAATGGACTGGCGGTCTCCTTATATGGACTTGGGCAATCATCCCCTCAAAAGGAAGCTTTTGGGGATGAGCTAGGCCCAGGTGCCATATCTTTACATGGTATCTGAGCCAGGTCCATCCCCGTTTAGGCTCCCAGTCCACGCTCTAGTCAGGCCTGGGCGTAAAGGGGGGTGTTAGAGTGGGTAAAAGTCCCACATCGGTTGGGGAATGGACTGGTGGTCTCCTTATATGGACTTGGCAATCCTCCCCTCAAAAGCTAGCTTTTGGGGTTGAGTAAGGCTCAGGTGCCATATCTTTACATTTGGAAAGCAGGATTTGTCTCGGATTGTCCCTGTAGATCCATTGCGATATCCATTACCTTTACGGCATTGTTAAATATGGGACTGTTGAAATTCCCTCAGTCATTGAATAAGAGGTTTTGATTGATTATCAAGGAGCAAAGAATTTAGGCCATAATACCAAAGAACAGATAACTTATTTATACTTACATGATTTGTGTTGATTATCTCCAGAAAGACCTTTCAGTTAAATACTAATGTTCCTTCTATCTTTGGGTCCATCTTCTACTGTGGAACAGATGGGAAAGATATGCAAAGTTGCTACGAAGCCTCTAGTGGTGACTTACACTGGTCTAATTCAAGCCTGTCTGGATTCTGGTGACATTCAGAGTGGAGCATACATCTTCAACCACATGCACCAGTTCTGCTCCCCAAATTTGATAACTTATAATATAATGCTAAAAGGTTATCTAGATAGTGGGATGTTTGAAGAAGCAAAGCAAATGTTTTTCAAGTTATTGGATAATGGTAACTCTATTAGCAGTAAATTGGACGGTAAGGATAAGGTTTTCCCAGATGTCTACACATTCAACTTGATGTTGGATGCATGTGCTGCTGGAAAGAAATGGGATGATCTCAAGTTTGTGTACTCACATATGCTGAAATATGGATACCACTTCAATGCAAAGCGTCACATTCAGATGGTACTTGACTCCTGCAGGGATGGAAAGGTACACTTTGTCAACCCAGTATTCAGCCTTTCATGTTCATTGGTTGTCATTCCTAGGAAATTCCCATATGAAATTTTATTTAGCTGATCATGGTGTAGACTGTCAAATTATTGTACAACTTTCTGTTTTGTTGAAATATAACTAGCTTTTCTTTAGAGAAAATATTTGAAAACTGATCCGCCCCCAATTTTCTGTAAATAATAAAACGATGTAACTTATGTGTCAAAAAGTAGTAGTATGAAACTTGTGCACAAAATTGAATCAGACCAGTACAATAAAACTAATTCTTTTCTTTCTATATTATAAAAACTAATTTGATCTCTTTATAGTCTGTTTAAGAAAAAAATTGTAAGTTCTTGCTATAATATGTGTCGATGATTTTGGGTAATAATAGAGATCAACACACCTAGGATTGTTACAGCAAAGAAAAGAAGCTTTTTTAATTAGTTTCATCCTTTAGCCAAGTCTTTCTTGCTCATACAATACCTCCGGATGTTTTTGTTTTCCTTCTGTGAGAACTATGAGTTATTTGTTTCCTCATGTACTTGCTGAAGTATAACTGATTAGTTGGGTAGTTCTTCACCGACCTAATTGGTATTATGGATGTGAAGATAAGAGCATGATCGTCAGCACTCGGAATTATTTTTGTTGGCTGAAGGAATTAAGAGGATGTTCTGGGATGGAAAATGCTGTCTTAACTTGTGGCCAACAAATTTCTTGCTGGAATGAGAAACCAGTGAACACAATGGGGTTTCTTTTGATTACCAGGGTGGCATACGTGGAGTTCAAATTGTTTTCAATTTGATGCCAGGTACTATGACAAGCCAATGGTCTGAGAGTTATCAGCTCATATGTCACGTACCTTTTGTGATTGTCTACCTACTGCTAGGAATAAAAAAAAAATAGAGAGAGGAGTGGTGGTTGGCACTCTCTTTTCCCTGTCAGTGCAGGACGCAGGGAAGTTTGAGTTAGAAGGTAGCTTGGGCTTGAGAAGATACTTTCTACTACATAAGGAGCTTGACTGGGTTGCTTGAGAAGCTTCCTGAATCTCTTTTTTCTTTTTTATACAGCTGCATCCCGTTTTCTAGTTCTGGAGTGAAATATTATGGTTTTTTAGTTTACTGGGAACACACCTCGAACTTCCCAATAATTTCCAAGGGTGCAACTACTATCCTTTTATCACTGTAGAGCACAACGTTGTGACCTAGTGGTCAGTAAAGACATCTATGAAGACAACATTAGGTGGTAATTCTTCCCATCTTTCTAAGCTTTTGGTGGTCTGAATACCACCTTTACAAAAATAAAAATAAAAACTATCCCTATTACCGAATGACAGTATCATTGGTTTGTCATATCGATCTTTTGGGCCAGTATACTAAAGTGAATCTAAGGTTGTTTTGGTTTTACTCTGACGATATCCCACTTTCATTTCTTTAGCTGATGATAGTTAAGAGTTATGACTATTCTACACGGACCTTTTCAGGTGGAATTATTGGAAGCAACATGGAAGGACTTGGCTCGGGCTGA</genome_strand>
        <mrna_strand>GTCATGGAGGTTATGTTCGAATGTGGCAAATACAATTTGGTCCATGACTTTTTCAAGAAAATGCAGAAGTCATGTGTTCCCAATGCTTTGACCTATAAAG............................................................................TTATTGTCAGTACTCTTTGGAAGGAAGGGAAAACAGACGAGGCCTTACTGTCTGTAGAAGACATGGAGCGACGAGGAATCGTGGGCACTGCCAGTTTGTATTATGACCTTGCTCGTTGCCTTTGCAGTGCAGGGAGGTGTGAAGAGGCGCTGATGCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAAGATATGCAAAGTTGCTACCAAGCCTCTAGTGGTGACTTACACTGGTCTAATTCAAGCCTGTCTGGATTCTGGTGACATTCAGAGTGGAGCATACATCTTCAACCACATGCACCAGTTTTGCTCCCCAAATTTGATAACTTACAATATAATGCTAAAAGGTTATCTAGATAGTGGGATGTTTGAAGAAGCAAAGCAAATGTTTTTCAAGCTATTGGATAATTGTAACTCTATTAGCAGTAAATTGGATGGTAAGGATAAGGTTTTCCCAGATGTCTACACATTCAACTTGATGTTGGATGCATGTGCTGCTGGAAAGAAATGGGATGATCTCAAGTTTGCCTACTCACATATGCTGAAATATGGATACCACTTCAATGCAAAGCGTCACATTCAGATAGTACTTGACTTCTGCAGGGATGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATTATTGGAAGCTACATGGAAGGACTTGGCTCGGGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405976" ref_strand="+" ref_description="SGN-E405976 [PPI-2-C16]">
      <seq>gtcatggaggttatgttcgaatgtggcaaatacaatttggtccatgactttttcaagaaaatgcagaagtcatgtgttcccaatgctttgacctataaagttattgtcagtactctttggaaggaagggaaaacagacgaggccttactgtctgtagaagacatggagcgacgaggaatcgtgggcactgccagtttgtattatgaccttgctcgttgcctttgcagtgcagggaggtgtgaagaggcgctgatgcaaatgggaaagatatgcaaagttgctaccaagcctctagtggtgacttacactggtctaattcaagcctgtctggattctggtgacattcagagtggagcatacatcttcaaccacatgcaccagttttgctccccaaatttgataacttacaatataatgctaaaaggttatctagatagtgggatgtttgaagaagcaaagcaaatgtttttcaagctattggataattgtaactctattagcagtaaattggatggtaaggataaggttttcccagatgtctacacattcaacttgatgttggatgcatgtgctgctggaaagaatgggatgatctcaagtttgcctactcacatatgctgaaatatggataccacttcaatgcaaagcgtcacattcagatagtacttgactcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="-" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="30159" stop="27420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29860" g_stop="29761" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29760" i_stop="29685" i_length="76">
            <donor d_prob="0.401" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29684" g_stop="29527" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="258" r_length="158" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29526" i_stop="28138" i_length="1389">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28137" g_stop="27720" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="675" r_length="417" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="-" ref_id="SGN-E405976" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29860" e_stop="29761"/>
          <exon e_start="29684" e_stop="29527"/>
          <exon e_start="28137" e_stop="27720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTCAGGTTATGTTCGAATGTGGCAAATACAATTTGGTTCATGACTTTTTCAAGAAAATGCAGAAGTCATGTGTTCCCAATGCTTTGACCTATAAAGGTAATGCAGAAACATGTGCTTGGTTGACATGCTGCAAGGAATTTTTGCTGAATCAAGTTTTCTTTGATGCGTGTAGTTATTGTGAGTACTCTTTGGAAGGAAGGGAAAACAGACGAGGCCTTACTGGCAGTAGAAGACATGGAGCGACGAGGAATCGTGGGCACTGCCAGTTTGTATTATGACCTTGCTCGTTGCCTTTGTAGTGCAGGGAGGTGTGAAGAGGCGCTGATGCAAGTACGTTTCTTGTAATAAGCTTCAATTGATCTTATTCTATTATGCAATTCTGTTTCCGGGCCCAATGATTTATCTTGAATATTCATATACGCTATTAGACATCAAATGAAAGGACGTCATCACGTTTCAGTAAAGTTGTTCCTTCATCAAAATATTTCATTATGTTTCTGACTATATAACATTTAGAAGCAAAATGCAATTGATACGAAGGTAGCATACATAAGTACGTGAATGTCCTGATTAAAAAGAACATAAGTACGTGAATGCAAATTCACTACTATTATTCTTTATATGAACTGCAAAAAAATAATCATAAGCTATCTGTAGGACTGCAAAAACACCCACAAGAAACCTAAGCTTGTACTCAATCCTCATATAATTCAAAATTCTAAGCACTGCTTGTCTGAAATTTTCTCAAGTATTTTATGTTTTCTGATTTGTTACTTCACTCATAGTTTGCTGAAGAGGTTAGTGCTCTTTTTGTTCATCAAGAATTTCATCTGTGTGCTAGGAGATCCTACTAAATTCATCCTTGAACAATCAATAACTGTGATGGAATGAAACTTCATCTCATACTTTTTCAAGTGAGTTAAATTAAAATTGTTACATTCATTTTCAACCGAGTGATATTCAGGACGTTGTTGTGCAGTTCAAATAACTGGTATTAGTTCTCTAGATTCCATGATCGTGTAGCACATGAAACTCTTGTTGATTTTGTCATCCATGAAACTGATTAGTCAAGCCCATTTTATGTGGACTTTTGAGCATCCCATATTTGGTGTTAGAGTGGGTAAAAGTCCCACATTGGTTGGGGAATGGACTGGCGGTCTCCTTATATGGACTTGGGCAATCATCCCCTCAAAAGGAAGCTTTTGGGGATGAGCTAGGCCCAGGTGCCATATCTTTACATGGTATCTGAGCCAGGTCCATCCCCGTTTAGGCTCCCAGTCCACGCTCTAGTCAGGCCTGGGCGTAAAGGGGGGTGTTAGAGTGGGTAAAAGTCCCACATCGGTTGGGGAATGGACTGGTGGTCTCCTTATATGGACTTGGCAATCCTCCCCTCAAAAGCTAGCTTTTGGGGTTGAGTAAGGCTCAGGTGCCATATCTTTACATTTGGAAAGCAGGATTTGTCTCGGATTGTCCCTGTAGATCCATTGCGATATCCATTACCTTTACGGCATTGTTAAATATGGGACTGTTGAAATTCCCTCAGTCATTGAATAAGAGGTTTTGATTGATTATCAAGGAGCAAAGAATTTAGGCCATAATACCAAAGAACAGATAACTTATTTATACTTACATGATTTGTGTTGATTATCTCCAGAAAGACCTTTCAGTTAAATACTAATGTTCCTTCTATCTTTGGGTCCATCTTCTACTGTGGAACAGATGGGAAAGATATGCAAAGTTGCTACGAAGCCTCTAGTGGTGACTTACACTGGTCTAATTCAAGCCTGTCTGGATTCTGGTGACATTCAGAGTGGAGCATACATCTTCAACCACATGCACCAGTTCTGCTCCCCAAATTTGATAACTTATAATATAATGCTAAAAGGTTATCTAGATAGTGGGATGTTTGAAGAAGCAAAGCAAATGTTTTTCAAGTTATTGGATAATGGTAACTCTATTAGCAGTAAATTGGACGGTAAGGATAAGGTTTTCCCAGATGTCTACACATTCAACTTGATGTTGGATGCATGTGCTGCTGGAAAGAAATGGGATGATCTCAAGTTTGTGTACTCACATATGCTGAAATATGGATACCACTTCAATGCAAAGCGTCACATTCAGATGGTACTTGACTCCT</genome_strand>
        <mrna_strand>GTCATGGAGGTTATGTTCGAATGTGGCAAATACAATTTGGTCCATGACTTTTTCAAGAAAATGCAGAAGTCATGTGTTCCCAATGCTTTGACCTATAAAG............................................................................TTATTGTCAGTACTCTTTGGAAGGAAGGGAAAACAGACGAGGCCTTACTGTCTGTAGAAGACATGGAGCGACGAGGAATCGTGGGCACTGCCAGTTTGTATTATGACCTTGCTCGTTGCCTTTGCAGTGCAGGGAGGTGTGAAGAGGCGCTGATGCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAAGATATGCAAAGTTGCTACCAAGCCTCTAGTGGTGACTTACACTGGTCTAATTCAAGCCTGTCTGGATTCTGGTGACATTCAGAGTGGAGCATACATCTTCAACCACATGCACCAGTTTTGCTCCCCAAATTTGATAACTTACAATATAATGCTAAAAGGTTATCTAGATAGTGGGATGTTTGAAGAAGCAAAGCAAATGTTTTTCAAGCTATTGGATAATTGTAACTCTATTAGCAGTAAATTGGATGGTAAGGATAAGGTTTTCCCAGATGTCTACACATTCAACTTGATGTTGGATGCATGTGCTGCTGGAAAG-AATGGGATGATCTCAAGTTTGCCTACTCACATATGCTGAAATATGGATACCACTTCAATGCAAAGCGTCACATTCAGATAGTACTTGACTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277738" ref_strand="+" ref_description="SGN-E277738 [cLEL-5-K16](-)">
      <seq>aaaggcttgaattcaagctcttctctattaattacattatctaagccacaagaaactacaatggaacccgcattcctcttctgcttcttaacctttttctttcccagagaaatttctaaagtgggtgtctcggaaattgaaaatcctgatgaaaaacaagggcaacggaggtaatttgaaccaaaaactccattgaaatcagtacaaagtgaagctccaaatagagcttctgtcaagataattgccaccatctcaactcaaccacgcattaaaggctgcactttattcttcttcttcttcctggtttgctccgtcggccgccggcgaccaaagataggattttcccggcatgtagttatgaatgttcactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="35090" stop="36062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35389" g_stop="35763" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E277738" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35389" e_stop="35763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCTTGAATTCAAGCTCTTCTCTATTAATTACATTATCTAAGCCACAAGAAACTACAATGGAACCCGCATTCCTCTTCTGCTTCTTAACCTTTTTCTTTCCCAGAGAAATTTCTAAAGTGGGTGTCTCGGAAATTGAAAATCCTGATGAAAAACAAGGGCAACGGAGGTAATTTGAACCAAAAACTCCATTGAAATCAGTACAAAGTGAAGCTCCAAATAGAGCTTCTGTCAAGATAATTGCCACCATCTCAACTCAACCACGCATTAAAGGCTGCACTTTATTCTTCTTCTTCTTCCTGGTTTGCTCCGTCGGCCGCCGGCGACCAAAGATAGGATTTTCCCGGCATGTAGTTATGAATGTTCAGTGCTTT</genome_strand>
        <mrna_strand>AAAGGCTTGAATTCAAGCTCTTCTCTATTAATTACATTATCTAAGCCACAAGAAACTACAATGGAACCCGCATTCCTCTTCTGCTTCTTAACCTTTTTCTTTCCCAGAGAAATTTCTAAAGTGGGTGTCTCGGAAATTGAAAATCCTGATGAAAAACAAGGGCAACGGAGGTAATTTGAACCAAAAACTCCATTGAAATCAGTACAAAGTGAAGCTCCAAATAGAGCTTCTGTCAAGATAATTGCCACCATCTCAACTCAACCACGCATTAAAGGCTGCACTTTATTCTTCTTCTTCTTCCTGGTTTGCTCCGTCGGCCGCCGGCGACCAAAGATAGGATTTTCCCGGCATGTAGTTATGAATGTTCACTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E416119" ref_strand="+" ref_description="SGN-E416119 [STM-22-D23]">
      <seq>ccgaggccttcatctgttgctttaattgaagaagaaggagaaaattctgttcaagttcctggtcctccaccaccacctcctcctcctcctccaccaccacctccaaaacttatggccaaaactacatcaggcatggtacagagagctcctcaagtagtagagttttatcattcactgatgaagagagactcgaggaaggattctttaaatggaggagtatgtgatgcatcaagtgtttcagacgttcgtagtagcatgatcggtgaaattgagaacagatcatcatatttgctggctataagggcagatgtggaaactcaagcagaatttgtgatttccctgatagcagaggtcaataatgcagtttattcagacatcgaggatgtggttgcttttgtgaaatggctagatgatgaactttgctttctggtggatgaaagggcagtcctaaagcactttgactggccagagagaaaagcagacacactaagggaggcagcatttggatatagagatctcaagaagttggagaatgaagtttcaacttataaagacgatcctcgatcgccatgtgatattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="41081" stop="42850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41381" g_stop="41677" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41678" i_stop="41906" i_length="229">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41907" g_stop="42038" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="429" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42039" i_stop="42397" i_length="359">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42398" g_stop="42550" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="582" r_length="153" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E416119" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41381" e_stop="41677"/>
          <exon e_start="41907" e_stop="42038"/>
          <exon e_start="42398" e_stop="42550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGGCCTTCATCTGTTGCTTTAATTGAAGAAGAAGGAGAAAATTCTGTTCAAGTTCCTGGTCCTCCACCACCACCTCCCCCACCTCCTCCCCCACCACCTCCAAAACTTATGGCGAAAACTACATCAGGCATGGTACAGAGAGCTCCTCAGGTTGTAGAATTTTATCATTCACTGATGAAGAGAGACTCGAGGAAGGATTCATTAAATGGAGGAGTATGTGATGCGTCAAGTGTTTCAGACGTTCGTAGTAGCATGATCGGTGAAATTGAGAACAGATCATCTTATTTGCTGGCTGTAAGTTCTTCCTCTCTAGTCTTCTCATTTCTATTATTGCCAATAAGGCACACTAACCATATCAATGACCAACTAAATTGCACTCAAGGACTTGAGATATCCACTGTATCTGGATTTCCCTGATTTTCCTTTCTGATTACTAGTCCAGCAATAAGGAAGTTTCAGATTTTTTCATTTAGTCTCTGGACTTAATTTTATTCCTGATTGCATATTATTGTCCCACTTCCAGATAAGGGCAGATGTTGAAACTCAAGCAGAATTTGTGATTTCCCTGATAGCAGAGGTCAATAATGCAGTTTATTCAGACATCGAGGACGTGGTTGCTTTTGTGAAATGGCTAGATGATGAACTTTGCTTTCTGGTAAGTTCAATGTGTTAATTATCTAATGAAGTATATCAGCATAGAGAAGAATGCCTTTATCTACTGTCACAGCAACGAAAAGCTTGTTATTGTCTCATTTTAAAATTTTTGGTATTATTCATATGAAAATGAAGAATAACTCAAAGAAAAATCATGCATCTATCCTAGTTCATTGTAATGGTATGACATTAAGCTCAGTAATTATTATCAATTGAATTCTTAGTAGCAAAATGCAGTTCTCAGGAAATTTTACCAAATGTTGAGGAACTATATCTGCTATATTTCATTTCACATTAAATAGATGCTTCAGTCTGTAATTTACTGTTAATTTTGATCATTGCGCCTGCACTGTTCTGAAGGTGGATGAAAGGGCAGTACTAAAGCACTTTGACTGGCCAGAGAGAAAAGCAGATACACTAAGGGAGGCAGCATTTGGATATAGAGATCTCAAGAAGTTGGAGAATGAAGTTTCAACTTACAAGGACGATCCTCGATCGCCATGTGATATTGCA</genome_strand>
        <mrna_strand>CCGAGGCCTTCATCTGTTGCTTTAATTGAAGAAGAAGGAGAAAATTCTGTTCAAGTTCCTGGTCCTCCACCACCACCTCCTCCTCCTCCTCCACCACCACCTCCAAAACTTATGGCCAAAACTACATCAGGCATGGTACAGAGAGCTCCTCAAGTAGTAGAGTTTTATCATTCACTGATGAAGAGAGACTCGAGGAAGGATTCTTTAAATGGAGGAGTATGTGATGCATCAAGTGTTTCAGACGTTCGTAGTAGCATGATCGGTGAAATTGAGAACAGATCATCATATTTGCTGGCT.....................................................................................................................................................................................................................................ATAAGGGCAGATGTGGAAACTCAAGCAGAATTTGTGATTTCCCTGATAGCAGAGGTCAATAATGCAGTTTATTCAGACATCGAGGATGTGGTTGCTTTTGTGAAATGGCTAGATGATGAACTTTGCTTTCTG.......................................................................................................................................................................................................................................................................................................................................................................GTGGATGAAAGGGCAGTCCTAAAGCACTTTGACTGGCCAGAGAGAAAAGCAGACACACTAAGGGAGGCAGCATTTGGATATAGAGATCTCAAGAAGTTGGAGAATGAAGTTTCAACTTATAAAGACGATCCTCGATCGCCATGTGATATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E438308" ref_strand="+" ref_description="SGN-E438308 [cSTA-7-K12]">
      <seq>ccgaggccttcatctgttgctttaattgaagaagaaggagaaaattctgttcaagttcctggtcctccaccaccacctcctcctcctcctccaccaccacctccaaaacttatggccaaaactacatcaggcatggtacagagagctcctcaagtagtagagttttatcattcactgatgaagagagactcgaggaaggattctttaaatggaggagtatgtgatgcatcaagtgtttcagacgttcgtagtagcatgatcggtgaaattgagaacagatcatcatatttgctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="41081" stop="41976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41381" g_stop="41676" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E438308" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41381" e_stop="41676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGGCCTTCATCTGTTGCTTTAATTGAAGAAGAAGGAGAAAATTCTGTTCAAGTTCCTGGTCCTCCACCACCACCTCCCCCACCTCCTCCCCCACCACCTCCAAAACTTATGGCGAAAACTACATCAGGCATGGTACAGAGAGCTCCTCAGGTTGTAGAATTTTATCATTCACTGATGAAGAGAGACTCGAGGAAGGATTCATTAAATGGAGGAGTATGTGATGCGTCAAGTGTTTCAGACGTTCGTAGTAGCATGATCGGTGAAATTGAGAACAGATCATCTTATTTGCTGGC</genome_strand>
        <mrna_strand>CCGAGGCCTTCATCTGTTGCTTTAATTGAAGAAGAAGGAGAAAATTCTGTTCAAGTTCCTGGTCCTCCACCACCACCTCCTCCTCCTCCTCCACCACCACCTCCAAAACTTATGGCCAAAACTACATCAGGCATGGTACAGAGAGCTCCTCAAGTAGTAGAGTTTTATCATTCACTGATGAAGAGAGACTCGAGGAAGGATTCTTTAAATGGAGGAGTATGTGATGCATCAAGTGTTTCAGACGTTCGTAGTAGCATGATCGGTGAAATTGAGAACAGATCATCATATTTGCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E416120" ref_strand="-" ref_description="SGN-E416120 [STM-22-D23]">
      <seq>cattgatgcgccactgcaaagagtttaaaatccccacacactggatgcttgataatgggatattaagcaagataaagtttggctctgtgaagttggctaaggtatacatgaagagggtagctgcggagcttcagtccaaaggaccattagataaagacacttccatggattacatgctactccaaggagtgagatttgctttccggattcatcagtttgctggaggatttgatgcagaaactatgcaagctttcgaggagctacggggcctagcactttctttaaacaagaaatagaagataaagatttttgtgatgaagtacaattttgatagagggcttaccatctcagtaaccatcaatccaagtattgacacatatgtataagtgaaaaataggtccttgtggaaatatggttgacatcaatgatattccttatcattggtaattggttcatgtttctgtattcaattttttgctttgggtttgatggaagcagaaagatctcaagttttcggtatatagtatataaagcttggtgaaaaagcagttagaacttttatgcaagttttctatcaatatactacttggcaaacagtttgaacttttatgtaataaataacaatgtgttttataaaaaaaaaatgtaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="42435" stop="44247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42735" g_stop="42805" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42806" i_stop="43285" i_length="480">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.746" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43286" g_stop="43429" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="215" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43430" i_stop="43566" i_length="137">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43567" g_stop="43955" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="589" r_length="374" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="633" polyA_stop="644"/>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E416120" ref_strand="-">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416120" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42735" e_stop="42805"/>
          <exon e_start="43286" e_stop="43429"/>
          <exon e_start="43567" e_stop="43955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGATGCGCCACTGCAAAGAGTTCAAAATCCCCACACACTGGATGCTTGATAATGGGATATTAAGCAAGGTCAGTTCTGACTGTTCCAAGTAGAAAATAATCTATTGATTTAGATCTTCAAATGGTAATAGAGCTTGAATGATACAATGAGTATCTAATGAGATATAACTAGCCGGAACTGGAAGTACACAACTAAGCAGTATGCTAACATGTTAAATTGTCCTAAAAAACTTTTATTTATGAAGTTAGTGAACTGTATTATGCATGTTATATAGTTCACCACCAGAAGGGAATCCGAATAATATGAGAAATTGATATGAGACAGATGATGAGTTTCAAGATTGTACATTATCTTTATGTTACATCCTGGCATGCCATTTTCAGTATCTCAACATTTCAATATTGAAATTGCTCATCTATTTCCAGTTTCATTCTTGCATATGTGCAAGTCCTCCTCTGCAGAATACTGAGCAAAAAAATACAGTACCTTTTTTCTTGATATCTAGTTGTCATTTTGCATTGGGACTTAATTCAAAAGAAATTATGCAGATAAAGTTTGGCTCTGTGAAGTTGGCTAAGGTGTACATGAAGAGGGTAGCTGCGGAGCTTCAGTCCAAAGGACCATTAGATAAAGACACTTCCATGGACTACATGCTACTCCAAGGAGTGAGATTTGCTTTCCGGATTCATCAGGTTTGTCTGATATTAGTAAATGCTGTCTTGTTGTGAATAACAGGATTTTACTACAGATGAAGAATAGATTGGTAATTCACCTGCATTGAATTGTTGTGAATGTCATCTTAGTTTAGTTTTTATCTCCATTGTTACAGTTTGCAGGAGGATTTGATGCAGAAACTATGCAAGCTTTCGAGGAGCTACGAGGCCTAGCACTTTCATTAAACAAGAAATAGAAGATAAAGATTTTTGTGATGAAGTACAATTTTGATAGAGGGCTTACCATCTCAGTAACCATCAATCCAAGTATTGACACATATGTATTAGAGAAAAAATAGAAGGTCTCTGTGGAAACATGGTTGACATCAATGATATTCCTTATCATTGATAATTGGTTCATGTTTTTGTATCCAATTTTTTGCTTTTGGTTTGATGGAAGTAGAAAGATCAGATCTCAAGTTTTCAGTATATTCTATATAAAGAAAGCTTGGTGAAAAAGCTAGAACTTTTATGCAAGTTTTCTATCATATCAATTTACTAATTG</genome_strand>
        <mrna_strand>CATTGATGCGCCACTGCAAAGAGTTTAAAATCCCCACACACTGGATGCTTGATAATGGGATATTAAGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGTTTGGCTCTGTGAAGTTGGCTAAGGTATACATGAAGAGGGTAGCTGCGGAGCTTCAGTCCAAAGGACCATTAGATAAAGACACTTCCATGGATTACATGCTACTCCAAGGAGTGAGATTTGCTTTCCGGATTCATCAG.........................................................................................................................................TTTGCTGGAGGATTTGATGCAGAAACTATGCAAGCTTTCGAGGAGCTACGGGGCCTAGCACTTTCTTTAAACAAGAAATAGAAGATAAAGATTTTTGTGATGAAGTACAATTTTGATAGAGGGCTTACCATCTCAGTAACCATCAATCCAAGTATTGACACATATGTATAAGTG-AAAAAT---AGGTCCTTGTGGAAATATGGTTGACATCAATGATATTCCTTATCATTGGTAATTGGTTCATGTTTCTGTATTCAATTTTTTGCTTTGGGTTTGATGGAAGCAG--A-A--AGATCTCAAGTTTTCGGTATATAGTATATAAAGCTTG-GTGAAAAAGCAGTTAGAACTTTTATGCAAGTTTTCTATCA-AT--A--TACTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322332" ref_strand="+" ref_description="SGN-E322332 [cTOB-24-I18]">
      <seq>acacagccatgttagacgtatatagtaccattaattccgtctcacaaaacttctccctatcatcggcgccggcgccgacactaccactaccgccgccttcgtcaccaccgacggtgagccgttacgagctacaaaaacggcgagactggaacacattcggacagtacttgagaaaccacaagccaccactgatacttgcgcgatgcagcggagcgaacattctagaattcttaaaatacctagatcaattcggaaaaacgaaagttcacagctgtaattgtccgtttttcggcgatcctcatccgccggcgccgtgcaattgcccgttgaaacaggcgtgggggagccttgacgcgctaattgggaggctacgcgctgctttcgaagagaacggaggacggacggagacgaatccgttcggtgctcgagcagtgaggttgtatttgaaggaagtgagagacacgcaagccaaagcgagggggattgcttatgagaagaagaaaagaagaaatattaagcagcggattagtagtactattaataattgtggatagagtttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0045L06-5PGDa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0045L06.2" temp_strand="+" temp_description="C02SLm0045L06.2  htgs_phase:2 submitted_to_sgn_as:C02Mbo0045L06 sequenced_by:kribb upload_account_name:korea len=71396">
        <position start="65415" stop="66576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65715" g_stop="66276" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0045L06.2" gen_strand="+" ref_id="SGN-E322332" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0045L06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65715" e_stop="66276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAGCCATGTTAGACGTATATAGTACCATTAATTCCGTCTCACAAAACTTCTCCCTATCATCGGCGCCGGCGCCGACACTACCACTACCGCCGCCTTCGTCACCACCGACGGTGAGCCGTTACGAGCTACAAAAACGGCGAGACTGGAACACATTCGGACAGTACTTGAGAAACCACAAGCCACCACTGATACTTGCGCGATGCAGCGGAGCGAACATTCTAGAATTCTTAAAATACCTAGATCAATTCGGAAAAACGAAAGTTCACAGCTGTAATTGTCCGTTTTTCGGCGATCCTCATCCGCCGGCGCCGTGCAATTGCCCGTTGAAACAGGCGTGGGGGAGCCTTGACGCGCTAATTGGGAGGCTACGCGCTGCTTTCGAAGAGAACGGAGGACGGACGGAGACGAATCCGTTCGGTGCTCGAGCAGTGAGGTTGTATTTGAAGGAAGTGAGAGACACGCAAGCCAAAGCGAGGGGGATTGCTTATGAGAAGAAGAAAAGAAGAAATATTAAGCAGCGGATTAGTAGTACTATTAATAATTGTGATTAGAGTTTGAG</genome_strand>
        <mrna_strand>ACACAGCCATGTTAGACGTATATAGTACCATTAATTCCGTCTCACAAAACTTCTCCCTATCATCGGCGCCGGCGCCGACACTACCACTACCGCCGCCTTCGTCACCACCGACGGTGAGCCGTTACGAGCTACAAAAACGGCGAGACTGGAACACATTCGGACAGTACTTGAGAAACCACAAGCCACCACTGATACTTGCGCGATGCAGCGGAGCGAACATTCTAGAATTCTTAAAATACCTAGATCAATTCGGAAAAACGAAAGTTCACAGCTGTAATTGTCCGTTTTTCGGCGATCCTCATCCGCCGGCGCCGTGCAATTGCCCGTTGAAACAGGCGTGGGGGAGCCTTGACGCGCTAATTGGGAGGCTACGCGCTGCTTTCGAAGAGAACGGAGGACGGACGGAGACGAATCCGTTCGGTGCTCGAGCAGTGAGGTTGTATTTGAAGGAAGTGAGAGACACGCAAGCCAAAGCGAGGGGGATTGCTTATGAGAAGAAGAAAAGAAGAAATATTAAGCAGCGGATTAGTAGTACTATTAATAATTGTGGATAGAGTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>44</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1292" PGL_stop="4290"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1292" e_stop="1371"/>
            <exon e_start="2809" e_stop="2938"/>
            <exon e_start="3706" e_stop="4151"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.938" acc_prob="0.977" e_score="0.988"/>
          <exon-intron don_prob="0.419" acc_prob="0.978" e_score="0.969"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="1292" e_stop="1371" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.938" acc_prob="0.977">
            <gDNA_intron_boundary i_start="1372" i_stop="2808" i_length="1437"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="2809" e_stop="2938" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.419" acc_prob="0.978">
            <gDNA_intron_boundary i_start="2939" i_stop="3705" i_length="767"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3706" e_stop="4151" e_length="446"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1292" stop="1371"/>
              <exon start="2809" stop="2938"/>
              <exon start="3706" stop="4066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415458" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3735" stop="4151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418902" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTATCTTAGTGCAATCATTGTTTACCTATATGCCCACGACTTTAAGCAAGCGGAGAAGTGCTACAATGATTGTTGTCA : GGTTGAAGTTTTCCTGAATAGCGATCAAGGTCGCTGTGCTGGTAAACTTCTTTCTGCATATGCTGACGGCGATGTTGAGGATATTAAACGGGTGTCACAATCAAGCACTGTTTCAAATCTTGATCACACG : ATCGTCAAGATTGCAAGGAAATTGCCTACAGGGGATGTTAGCGCACTCAAGAATGAAGCCATGAAAGACAATGAAGATCCTTTGGATGAGGATGATCTGACCTAAACTTTCACTAGTTGATGGAATGAGTCGAAGCTTTATGTGTGCTGAGTTTGTGTCTGGAACATCGAGTCTTGCTTTTACAATCTATCTTGCTAGATTTATCAGCTATATCATGACAAATTGTCTGAGGAAAACCCTGTACAGAAGAATCTCACAAACCCTCCCTCCGTTGATTGCTTTGCAGATTGGAAGCTTTTGTTCATGAATATAATTGATTATTGGGTAATCTTAGCAGTGTGGTTCTGTACTGTGTTTATCTGCTCCTATTGTTCCTCCAGCACTGACCATAAAGATGGTGTAAAATGTGTTTGTCCATCTACTACTTGAAAATGCATGTGTTTTTT</gDNA_template>
            <first_frame> A  Y  L  S  A  I  I  V  Y  L  Y  A  H  D  F  K  Q  A  E  K  C  Y  N  D  C  C  Q :   V  E  V  F  L  N  S  D  Q  G  R  C  A  G  K  L  L  S  A  Y  A  D  G  D  V  E  D  I  K  R  V  S  Q  S  S  T  V  S  N  L  D  H  T  :  I  V  K  I  A  R  K  L  P  T  G  D  V  S  A  L  K  N  E  A  M  K  D  N  E  D  P  L  D  E  D  D  L  T  *  T  F  T  S  *  W  N  E  S  K  L  Y  V  C  *  V  C  V  W  N  I  E  S  C  F  Y  N  L  S  C  *  I  Y  Q  L  Y  H  D  K  L  S  E  E  N  P  V  Q  K  N  L  T  N  P  P  S  V  D  C  F  A  D  W  K  L  L  F  M  N  I  I  D  Y  W  V  I  L  A  V  W  F  C  T  V  F  I  C  S  Y  C  S  S  S  T  D  H  K  D  G  V  K  C  V  C  P  S  T  T  *  K  C  M  C  F   </first_frame>
            <second_frame>  L  I  L  V  Q  S  L  F  T  Y  M  P  T  T  L  S  K  R  R  S  A  T  M  I  V  V   : R  L  K  F  S  *  I  A  I  K  V  A  V  L  V  N  F  F  L  H  M  L  T  A  M  L  R  I  L  N  G  C  H  N  Q  A  L  F  Q  I  L  I  T  R :   S  S  R  L  Q  G  N  C  L  Q  G  M  L  A  H  S  R  M  K  P  *  K  T  M  K  I  L  W  M  R  M  I  *  P  K  L  S  L  V  D  G  M  S  R  S  F  M  C  A  E  F  V  S  G  T  S  S  L  A  F  T  I  Y  L  A  R  F  I  S  Y  I  M  T  N  C  L  R  K  T  L  Y  R  R  I  S  Q  T  L  P  P  L  I  A  L  Q  I  G  S  F  C  S  *  I  *  L  I  I  G  *  S  *  Q  C  G  S  V  L  C  L  S  A  P  I  V  P  P  A  L  T  I  K  M  V  *  N  V  F  V  H  L  L  L  E  N  A  C  V  F  </second_frame>
            <third_frame>   L  S  *  C  N  H  C  L  P  I  C  P  R  L  *  A  S  G  E  V  L  Q  *  L  L  S  :  G  *  S  F  P  E  *  R  S  R  S  L  C  W  *  T  S  F  C  I  C  *  R  R  C  *  G  Y  *  T  G  V  T  I  K  H  C  F  K  S  *  S  H   : D  R  Q  D  C  K  E  I  A  Y  R  G  C  *  R  T  Q  E  *  S  H  E  R  Q  *  R  S  F  G  *  G  *  S  D  L  N  F  H  *  L  M  E  *  V  E  A  L  C  V  L  S  L  C  L  E  H  R  V  L  L  L  Q  S  I  L  L  D  L  S  A  I  S  *  Q  I  V  *  G  K  P  C  T  E  E  S  H  K  P  S  L  R  *  L  L  C  R  L  E  A  F  V  H  E  Y  N  *  L  L  G  N  L  S  S  V  V  L  Y  C  V  Y  L  L  L  L  F  L  Q  H  *  P  *  R  W  C  K  M  C  L  S  I  Y  Y  L  K  M  H  V  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1292" stop="1371"/>
                    <exon start="2809" stop="2938"/>
                    <exon start="3706" stop="3810"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYLSAIIVYLYAHDFKQAEKCYNDCCQVEVFLNSDQGRCAGKLLSAYADGDVEDIKRVSQSSTVSNLDHTIVKIARKLPTGDVSALKNEAMKDNEDPLDEDDLT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3904" stop="4134"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYQLYHDKLSEENPVQKNLTNPPSVDCFADWKLLFMNIIDYWVILAVWFCTVFICSYCSSSTDHKDGVKCVCPSTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="1292" e_stop="1371"/>
            <exon e_start="2809" e_stop="2938"/>
            <exon e_start="3706" e_stop="4066"/>
            <exon e_start="4196" e_stop="4206"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.938" acc_prob="0.977" e_score="0.988"/>
          <exon-intron don_prob="0.419" acc_prob="0.978" e_score="0.969"/>
          <exon-intron don_prob="0.000" acc_prob="0.355" e_score="0.961"/>
          <exon-only e_score="0.727"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="1292" e_stop="1371" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.938" acc_prob="0.977">
            <gDNA_intron_boundary i_start="1372" i_stop="2808" i_length="1437"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="2809" e_stop="2938" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.419" acc_prob="0.978">
            <gDNA_intron_boundary i_start="2939" i_stop="3705" i_length="767"/>
          </intron>
          <exon e_serial="3" e_score="0.961">
            <gDNA_exon_boundary e_start="3706" e_stop="4066" e_length="361"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.355">
            <gDNA_intron_boundary i_start="4067" i_stop="4195" i_length="129"/>
          </intron>
          <exon e_serial="4" e_score="0.727">
            <gDNA_exon_boundary e_start="4196" e_stop="4206" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1292" stop="1371"/>
              <exon start="2809" stop="2938"/>
              <exon start="3706" stop="4066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415458" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3753" stop="4066"/>
              <exon start="4196" stop="4206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614248" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTATCTTAGTGCAATCATTGTTTACCTATATGCCCACGACTTTAAGCAAGCGGAGAAGTGCTACAATGATTGTTGTCA : GGTTGAAGTTTTCCTGAATAGCGATCAAGGTCGCTGTGCTGGTAAACTTCTTTCTGCATATGCTGACGGCGATGTTGAGGATATTAAACGGGTGTCACAATCAAGCACTGTTTCAAATCTTGATCACACG : ATCGTCAAGATTGCAAGGAAATTGCCTACAGGGGATGTTAGCGCACTCAAGAATGAAGCCATGAAAGACAATGAAGATCCTTTGGATGAGGATGATCTGACCTAAACTTTCACTAGTTGATGGAATGAGTCGAAGCTTTATGTGTGCTGAGTTTGTGTCTGGAACATCGAGTCTTGCTTTTACAATCTATCTTGCTAGATTTATCAGCTATATCATGACAAATTGTCTGAGGAAAACCCTGTACAGAAGAATCTCACAAACCCTCCCTCCGTTGATTGCTTTGCAGATTGGAAGCTTTTGTTCATGAATATAATTGATTATTGGGTAATCTTAGCAGTGTGGTTCTGTACTGTGTTTATCT : GAACAAAACTA</gDNA_template>
            <first_frame> A  Y  L  S  A  I  I  V  Y  L  Y  A  H  D  F  K  Q  A  E  K  C  Y  N  D  C  C  Q :   V  E  V  F  L  N  S  D  Q  G  R  C  A  G  K  L  L  S  A  Y  A  D  G  D  V  E  D  I  K  R  V  S  Q  S  S  T  V  S  N  L  D  H  T  :  I  V  K  I  A  R  K  L  P  T  G  D  V  S  A  L  K  N  E  A  M  K  D  N  E  D  P  L  D  E  D  D  L  T  *  T  F  T  S  *  W  N  E  S  K  L  Y  V  C  *  V  C  V  W  N  I  E  S  C  F  Y  N  L  S  C  *  I  Y  Q  L  Y  H  D  K  L  S  E  E  N  P  V  Q  K  N  L  T  N  P  P  S  V  D  C  F  A  D  W  K  L  L  F  M  N  I  I  D  Y  W  V  I  L  A  V  W  F  C  T  V  F  I   : *  T  K  L </first_frame>
            <second_frame>  L  I  L  V  Q  S  L  F  T  Y  M  P  T  T  L  S  K  R  R  S  A  T  M  I  V  V   : R  L  K  F  S  *  I  A  I  K  V  A  V  L  V  N  F  F  L  H  M  L  T  A  M  L  R  I  L  N  G  C  H  N  Q  A  L  F  Q  I  L  I  T  R :   S  S  R  L  Q  G  N  C  L  Q  G  M  L  A  H  S  R  M  K  P  *  K  T  M  K  I  L  W  M  R  M  I  *  P  K  L  S  L  V  D  G  M  S  R  S  F  M  C  A  E  F  V  S  G  T  S  S  L  A  F  T  I  Y  L  A  R  F  I  S  Y  I  M  T  N  C  L  R  K  T  L  Y  R  R  I  S  Q  T  L  P  P  L  I  A  L  Q  I  G  S  F  C  S  *  I  *  L  I  I  G  *  S  *  Q  C  G  S  V  L  C  L  S  :  E  Q  N   </second_frame>
            <third_frame>   L  S  *  C  N  H  C  L  P  I  C  P  R  L  *  A  S  G  E  V  L  Q  *  L  L  S  :  G  *  S  F  P  E  *  R  S  R  S  L  C  W  *  T  S  F  C  I  C  *  R  R  C  *  G  Y  *  T  G  V  T  I  K  H  C  F  K  S  *  S  H   : D  R  Q  D  C  K  E  I  A  Y  R  G  C  *  R  T  Q  E  *  S  H  E  R  Q  *  R  S  F  G  *  G  *  S  D  L  N  F  H  *  L  M  E  *  V  E  A  L  C  V  L  S  L  C  L  E  H  R  V  L  L  L  Q  S  I  L  L  D  L  S  A  I  S  *  Q  I  V  *  G  K  P  C  T  E  E  S  H  K  P  S  L  R  *  L  L  C  R  L  E  A  F  V  H  E  Y  N  *  L  L  G  N  L  S  S  V  V  L  Y  C  V  Y  L :   N  K  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1292" stop="1371"/>
                    <exon start="2809" stop="2938"/>
                    <exon start="3706" stop="3810"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYLSAIIVYLYAHDFKQAEKCYNDCCQVEVFLNSDQGRCAGKLLSAYADGDVEDIKRVSQSSTVSNLDHTIVKIARKLPTGDVSALKNEAMKDNEDPLDEDDLT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3806" stop="4012"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLSLVDGMSRSFMCAEFVSGTSSLAFTIYLARFISYIMTNCLRKTLYRRISQTLPPLIALQIGSFCS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="2809" e_stop="2938"/>
            <exon e_start="3706" e_stop="4041"/>
            <exon e_start="4277" e_stop="4290"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.419" acc_prob="0.978" e_score="0.969"/>
          <exon-intron don_prob="0.000" acc_prob="0.737" e_score="0.938"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="2809" e_stop="2938" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.419" acc_prob="0.978">
            <gDNA_intron_boundary i_start="2939" i_stop="3705" i_length="767"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="3706" e_stop="4041" e_length="336"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.737">
            <gDNA_intron_boundary i_start="4042" i_stop="4276" i_length="235"/>
          </intron>
          <exon e_serial="3" e_score="0.714">
            <gDNA_exon_boundary e_start="4277" e_stop="4290" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2809" stop="2938"/>
              <exon start="3706" stop="4041"/>
              <exon start="4277" stop="4290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416692" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTGAAGTTTTCCTGAATAGCGATCAAGGTCGCTGTGCTGGTAAACTTCTTTCTGCATATGCTGACGGCGATGTTGAGGATATTAAACGGGTGTCACAATCAAGCACTGTTTCAAATCTTGATCACACG : ATCGTCAAGATTGCAAGGAAATTGCCTACAGGGGATGTTAGCGCACTCAAGAATGAAGCCATGAAAGACAATGAAGATCCTTTGGATGAGGATGATCTGACCTAAACTTTCACTAGTTGATGGAATGAGTCGAAGCTTTATGTGTGCTGAGTTTGTGTCTGGAACATCGAGTCTTGCTTTTACAATCTATCTTGCTAGATTTATCAGCTATATCATGACAAATTGTCTGAGGAAAACCCTGTACAGAAGAATCTCACAAACCCTCCCTCCGTTGATTGCTTTGCAGATTGGAAGCTTTTGTTCATGAATATAATTGATTATTGGGTAATCTTAGCA : AAAAATCAAGAACC</gDNA_template>
            <first_frame> G  *  S  F  P  E  *  R  S  R  S  L  C  W  *  T  S  F  C  I  C  *  R  R  C  *  G  Y  *  T  G  V  T  I  K  H  C  F  K  S  *  S  H   : D  R  Q  D  C  K  E  I  A  Y  R  G  C  *  R  T  Q  E  *  S  H  E  R  Q  *  R  S  F  G  *  G  *  S  D  L  N  F  H  *  L  M  E  *  V  E  A  L  C  V  L  S  L  C  L  E  H  R  V  L  L  L  Q  S  I  L  L  D  L  S  A  I  S  *  Q  I  V  *  G  K  P  C  T  E  E  S  H  K  P  S  L  R  *  L  L  C  R  L  E  A  F  V  H  E  Y  N  *  L  L  G  N  L  S   : K  K  S  R  T </first_frame>
            <second_frame>  V  E  V  F  L  N  S  D  Q  G  R  C  A  G  K  L  L  S  A  Y  A  D  G  D  V  E  D  I  K  R  V  S  Q  S  S  T  V  S  N  L  D  H  T  :  I  V  K  I  A  R  K  L  P  T  G  D  V  S  A  L  K  N  E  A  M  K  D  N  E  D  P  L  D  E  D  D  L  T  *  T  F  T  S  *  W  N  E  S  K  L  Y  V  C  *  V  C  V  W  N  I  E  S  C  F  Y  N  L  S  C  *  I  Y  Q  L  Y  H  D  K  L  S  E  E  N  P  V  Q  K  N  L  T  N  P  P  S  V  D  C  F  A  D  W  K  L  L  F  M  N  I  I  D  Y  W  V  I  L  A  :  K  N  Q  E   </second_frame>
            <third_frame>   L  K  F  S  *  I  A  I  K  V  A  V  L  V  N  F  F  L  H  M  L  T  A  M  L  R  I  L  N  G  C  H  N  Q  A  L  F  Q  I  L  I  T  R :   S  S  R  L  Q  G  N  C  L  Q  G  M  L  A  H  S  R  M  K  P  *  K  T  M  K  I  L  W  M  R  M  I  *  P  K  L  S  L  V  D  G  M  S  R  S  F  M  C  A  E  F  V  S  G  T  S  S  L  A  F  T  I  Y  L  A  R  F  I  S  Y  I  M  T  N  C  L  R  K  T  L  Y  R  R  I  S  Q  T  L  P  P  L  I  A  L  Q  I  G  S  F  C  S  *  I  *  L  I  I  G  *  S  *  Q :   K  I  K  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2810" stop="2938"/>
                    <exon start="3706" stop="3810"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEVFLNSDQGRCAGKLLSAYADGDVEDIKRVSQSSTVSNLDHTIVKIARKLPTGDVSALKNEAMKDNEDPLDEDDLT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3806" stop="4012"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLSLVDGMSRSFMCAEFVSGTSSLAFTIYLARFISYIMTNCLRKTLYRRISQTLPPLIALQIGSFCS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="17263" PGL_stop="19186"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17277" e_stop="17509"/>
            <exon e_start="17692" e_stop="17819"/>
            <exon e_start="18258" e_stop="18327"/>
            <exon e_start="18487" e_stop="18591"/>
            <exon e_start="18743" e_stop="18838"/>
            <exon e_start="18933" e_stop="18989"/>
            <exon e_start="19107" e_stop="19186"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.929" e_score="0.979"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17277" e_stop="17509" e_length="233"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17510" i_stop="17691" i_length="182"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17692" e_stop="17819" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.903">
            <gDNA_intron_boundary i_start="17820" i_stop="18257" i_length="438"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18258" e_stop="18327" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18328" i_stop="18486" i_length="159"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18487" e_stop="18591" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.978">
            <gDNA_intron_boundary i_start="18592" i_stop="18742" i_length="151"/>
          </intron>
          <exon e_serial="5" e_score="0.979">
            <gDNA_exon_boundary e_start="18743" e_stop="18838" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.911" acc_prob="0.929">
            <gDNA_intron_boundary i_start="18839" i_stop="18932" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18933" e_stop="18989" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18990" i_stop="19106" i_length="117"/>
          </intron>
          <exon e_serial="7" e_score="0.975">
            <gDNA_exon_boundary e_start="19107" e_stop="19186" e_length="80"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17277" stop="17509"/>
              <exon start="17692" stop="17819"/>
              <exon start="18258" stop="18327"/>
              <exon start="18487" stop="18591"/>
              <exon start="18743" stop="18789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17278" stop="17509"/>
              <exon start="17692" stop="17819"/>
              <exon start="18258" stop="18327"/>
              <exon start="18487" stop="18575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17323" stop="17509"/>
              <exon start="17692" stop="17819"/>
              <exon start="18258" stop="18327"/>
              <exon start="18487" stop="18591"/>
              <exon start="18743" stop="18838"/>
              <exon start="18933" stop="18989"/>
              <exon start="19107" stop="19186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17335" stop="17509"/>
              <exon start="17692" stop="17819"/>
              <exon start="18258" stop="18327"/>
              <exon start="18487" stop="18591"/>
              <exon start="18743" stop="18802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278019" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAAAACAGATTGAAAACTGTTAATAGCAGCTGATAGTGATGGGATTGAGATGAAGCAGAAATGAGCAACATGGCTATGGCTATGGCTTTGCCTTCTTCAACATCACCATTTCTTTTTTCTTGTACTACTCAAAAGCAAGCTCATAATTTCACCTCATCAAGAAAACCCCTCCATCGCTTTGTTACTCGTTCTACTCTCTCTGATGATCTCTTCCTAGCCGCCAAACACACT : GTGGATTCATATGTGAAGAATGGTATGGTTGTTGGATTAGGTTCAGGTCATGCTTCTACATTGGCTATACAGTATCTAGGTCAGAAACTACGAGCTGGTACTATAAAAGATGTCACTGCCATACCCAC : ATGTGTTAGCAGTGCAAGTGAAGCAGCAAAGGCAGGAATTCCTTTGGAACAGTATGATGACAGTTTAAAG : ATTGATCTAGCATTTGATGAAGCTGACATTATGGAAGAAGAAACACTTGCTGCAATTATTGGTCGACGAAAACTGCAGGGAGATGATTCTATAATTAAAGAGAAG : ACTATTTTAGAAGCAGCTGATCAACTGATATTTATTATAAAGGAAAAACAATTCAAGGGCGGTGTAGAAGGTTCAGTTCCAGTACTAATCAAATCT : GTTAACTGGCTTGAAACAGCTGAAGAAATAGACGACCTCTTCCTCGGTGATGCAGAG : GTTTGGAGGAGGCCAGCTATAGGGTATGCAGGTCCTCTTGGAGGTGATTTCCCTTTAGTTACTAAAGAAGGGCACAACAT</gDNA_template>
            <first_frame> F  K  T  D  *  K  L  L  I  A  A  D  S  D  G  I  E  M  K  Q  K  *  A  T  W  L  W  L  W  L  C  L  L  Q  H  H  H  F  F  F  L  V  L  L  K  S  K  L  I  I  S  P  H  Q  E  N  P  S  I  A  L  L  L  V  L  L  S  L  M  I  S  S  *  P  P  N  T  L :   W  I  H  M  *  R  M  V  W  L  L  D  *  V  Q  V  M  L  L  H  W  L  Y  S  I  *  V  R  N  Y  E  L  V  L  *  K  M  S  L  P  Y  P   : H  V  L  A  V  Q  V  K  Q  Q  R  Q  E  F  L  W  N  S  M  M  T  V  *  R :   L  I  *  H  L  M  K  L  T  L  W  K  K  K  H  L  L  Q  L  L  V  D  E  N  C  R  E  M  I  L  *  L  K  R  R :   L  F  *  K  Q  L  I  N  *  Y  L  L  *  R  K  N  N  S  R  A  V  *  K  V  Q  F  Q  Y  *  S  N  L :   L  T  G  L  K  Q  L  K  K  *  T  T  S  S  S  V  M  Q  R :   F  G  G  G  Q  L  *  G  M  Q  V  L  L  E  V  I  S  L  *  L  L  K  K  G  T  T  </first_frame>
            <second_frame>  S  K  Q  I  E  N  C  *  *  Q  L  I  V  M  G  L  R  *  S  R  N  E  Q  H  G  Y  G  Y  G  F  A  F  F  N  I  T  I  S  F  F  L  Y  Y  S  K  A  S  S  *  F  H  L  I  K  K  T  P  P  S  L  C  Y  S  F  Y  S  L  *  *  S  L  P  S  R  Q  T  H   : C  G  F  I  C  E  E  W  Y  G  C  W  I  R  F  R  S  C  F  Y  I  G  Y  T  V  S  R  S  E  T  T  S  W  Y  Y  K  R  C  H  C  H  T  H  :  M  C  *  Q  C  K  *  S  S  K  G  R  N  S  F  G  T  V  *  *  Q  F  K   : D  *  S  S  I  *  *  S  *  H  Y  G  R  R  N  T  C  C  N  Y  W  S  T  K  T  A  G  R  *  F  Y  N  *  R  E   : D  Y  F  R  S  S  *  S  T  D  I  Y  Y  K  G  K  T  I  Q  G  R  C  R  R  F  S  S  S  T  N  Q  I   : C  *  L  A  *  N  S  *  R  N  R  R  P  L  P  R  *  C  R   : G  L  E  E  A  S  Y  R  V  C  R  S  S  W  R  *  F  P  F  S  Y  *  R  R  A  Q  H </second_frame>
            <third_frame>   Q  N  R  L  K  T  V  N  S  S  *  *  *  W  D  *  D  E  A  E  M  S  N  M  A  M  A  M  A  L  P  S  S  T  S  P  F  L  F  S  C  T  T  Q  K  Q  A  H  N  F  T  S  S  R  K  P  L  H  R  F  V  T  R  S  T  L  S  D  D  L  F  L  A  A  K  H  T  :  V  D  S  Y  V  K  N  G  M  V  V  G  L  G  S  G  H  A  S  T  L  A  I  Q  Y  L  G  Q  K  L  R  A  G  T  I  K  D  V  T  A  I  P  T :   C  V  S  S  A  S  E  A  A  K  A  G  I  P  L  E  Q  Y  D  D  S  L  K  :  I  D  L  A  F  D  E  A  D  I  M  E  E  E  T  L  A  A  I  I  G  R  R  K  L  Q  G  D  D  S  I  I  K  E  K  :  T  I  L  E  A  A  D  Q  L  I  F  I  I  K  E  K  Q  F  K  G  G  V  E  G  S  V  P  V  L  I  K  S  :  V  N  W  L  E  T  A  E  E  I  D  D  L  F  L  G  D  A  E  :  V  W  R  R  P  A  I  G  Y  A  G  P  L  G  G  D  F  P  L  V  T  K  E  G  H  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17327" stop="17509"/>
                    <exon start="17692" stop="17819"/>
                    <exon start="18258" stop="18327"/>
                    <exon start="18487" stop="18591"/>
                    <exon start="18743" stop="18838"/>
                    <exon start="18933" stop="18989"/>
                    <exon start="19107" stop="19184"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DEAEMSNMAMAMALPSSTSPFLFSCTTQKQAHNFTSSRKPLHRFVTRSTLSDDLFLAAKHTVDSYVKNGMVVGLGSGHASTLAIQYLGQKLRAGTIKDVTAIPTCVSSASEAAKAGIPLEQYDDSLKIDLAFDEADIMEEETLAAIIGRRKLQGDDSIIKEKTILEAADQLIFIIKEKQFKGGVEGSVPVLIKSVNWLETAEEIDDLFLGDAEVWRRPAIGYAGPLGGDFPLVTKEGHN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17319" e_stop="17509"/>
            <exon e_start="17692" e_stop="17819"/>
            <exon e_start="18242" e_stop="18327"/>
            <exon e_start="18487" e_stop="18575"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.330" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17319" e_stop="17509" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17510" i_stop="17691" i_length="182"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17692" e_stop="17819" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.330">
            <gDNA_intron_boundary i_start="17820" i_stop="18241" i_length="422"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18242" e_stop="18327" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18328" i_stop="18486" i_length="159"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="18487" e_stop="18575" e_length="89"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17319" stop="17509"/>
              <exon start="17692" stop="17819"/>
              <exon start="18242" stop="18327"/>
              <exon start="18487" stop="18575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256393" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGATTGAGATGAAGCAGAAATGAGCAACATGGCTATGGCTATGGCTTTGCCTTCTTCAACATCACCATTTCTTTTTTCTTGTACTACTCAAAAGCAAGCTCATAATTTCACCTCATCAAGAAAACCCCTCCATCGCTTTGTTACTCGTTCTACTCTCTCTGATGATCTCTTCCTAGCCGCCAAACACACT : GTGGATTCATATGTGAAGAATGGTATGGTTGTTGGATTAGGTTCAGGTCATGCTTCTACATTGGCTATACAGTATCTAGGTCAGAAACTACGAGCTGGTACTATAAAAGATGTCACTGCCATACCCAC : GAACACTCTGATGCAGATGTGTTAGCAGTGCAAGTGAAGCAGCAAAGGCAGGAATTCCTTTGGAACAGTATGATGACAGTTTAAAG : ATTGATCTAGCATTTGATGAAGCTGACATTATGGAAGAAGAAACACTTGCTGCAATTATTGGTCGACGAAAACTGCAGGGAGATGATTC</gDNA_template>
            <first_frame> G  I  E  M  K  Q  K  *  A  T  W  L  W  L  W  L  C  L  L  Q  H  H  H  F  F  F  L  V  L  L  K  S  K  L  I  I  S  P  H  Q  E  N  P  S  I  A  L  L  L  V  L  L  S  L  M  I  S  S  *  P  P  N  T  L :   W  I  H  M  *  R  M  V  W  L  L  D  *  V  Q  V  M  L  L  H  W  L  Y  S  I  *  V  R  N  Y  E  L  V  L  *  K  M  S  L  P  Y  P   : R  T  L  *  C  R  C  V  S  S  A  S  E  A  A  K  A  G  I  P  L  E  Q  Y  D  D  S  L  K  :  I  D  L  A  F  D  E  A  D  I  M  E  E  E  T  L  A  A  I  I  G  R  R  K  L  Q  G  D  D   </first_frame>
            <second_frame>  G  L  R  *  S  R  N  E  Q  H  G  Y  G  Y  G  F  A  F  F  N  I  T  I  S  F  F  L  Y  Y  S  K  A  S  S  *  F  H  L  I  K  K  T  P  P  S  L  C  Y  S  F  Y  S  L  *  *  S  L  P  S  R  Q  T  H   : C  G  F  I  C  E  E  W  Y  G  C  W  I  R  F  R  S  C  F  Y  I  G  Y  T  V  S  R  S  E  T  T  S  W  Y  Y  K  R  C  H  C  H  T  H  :  E  H  S  D  A  D  V  L  A  V  Q  V  K  Q  Q  R  Q  E  F  L  W  N  S  M  M  T  V  *  R :   L  I  *  H  L  M  K  L  T  L  W  K  K  K  H  L  L  Q  L  L  V  D  E  N  C  R  E  M  I  </second_frame>
            <third_frame>   D  *  D  E  A  E  M  S  N  M  A  M  A  M  A  L  P  S  S  T  S  P  F  L  F  S  C  T  T  Q  K  Q  A  H  N  F  T  S  S  R  K  P  L  H  R  F  V  T  R  S  T  L  S  D  D  L  F  L  A  A  K  H  T  :  V  D  S  Y  V  K  N  G  M  V  V  G  L  G  S  G  H  A  S  T  L  A  I  Q  Y  L  G  Q  K  L  R  A  G  T  I  K  D  V  T  A  I  P  T :   N  T  L  M  Q  M  C  *  Q  C  K  *  S  S  K  G  R  N  S  F  G  T  V  *  *  Q  F  K   : D  *  S  S  I  *  *  S  *  H  Y  G  R  R  N  T  C  C  N  Y  W  S  T  K  T  A  G  R  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17327" stop="17509"/>
                    <exon start="17692" stop="17819"/>
                    <exon start="18242" stop="18266"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DEAEMSNMAMAMALPSSTSPFLFSCTTQKQAHNFTSSRKPLHRFVTRSTLSDDLFLAAKHTVDSYVKNGMVVGLGSGHASTLAIQYLGQKLRAGTIKDVTAIPTNTLMQMC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="17276" e_stop="17509"/>
            <exon e_start="17692" e_stop="18070"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.983"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="17276" e_stop="17509" e_length="234"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17510" i_stop="17691" i_length="182"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="17692" e_stop="18070" e_length="379"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17276" stop="17509"/>
              <exon start="17692" stop="18070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366765" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCAAAACAGATTGAAAACTGTTAATAGCAGCTGATAGTGATGGGATTGAGATGAAGCAGAAATGAGCAACATGGCTATGGCTATGGCTTTGCCTTCTTCAACATCACCATTTCTTTTTTCTTGTACTACTCAAAAGCAAGCTCATAATTTCACCTCATCAAGAAAACCCCTCCATCGCTTTGTTACTCGTTCTACTCTCTCTGATGATCTCTTCCTAGCCGCCAAACACACT : GTGGATTCATATGTGAAGAATGGTATGGTTGTTGGATTAGGTTCAGGTCATGCTTCTACATTGGCTATACAGTATCTAGGTCAGAAACTACGAGCTGGTACTATAAAAGATGTCACTGCCATACCCACGTAAGTTGAATCTATTGATCCTAATAAATAAGGGAAATATGATACCATCGTAGAATCTGATTTGGGCTTGTATGTGTTCTTTGTTGGTAGTTCATAGTGCAGATTAACTTGTTTGTTGAATAGACACACTCCATGTTATGTTGTTTTACTCGTCGTGTTCCCACTTCAACTATAGGGTGTGTTGAGAAATGATTTTACCTTGGAATTATCAATTTCTGGATTCATTAGATAGATAGTTGACACATGAAACA</gDNA_template>
            <first_frame> F  Q  N  R  L  K  T  V  N  S  S  *  *  *  W  D  *  D  E  A  E  M  S  N  M  A  M  A  M  A  L  P  S  S  T  S  P  F  L  F  S  C  T  T  Q  K  Q  A  H  N  F  T  S  S  R  K  P  L  H  R  F  V  T  R  S  T  L  S  D  D  L  F  L  A  A  K  H  T  :  V  D  S  Y  V  K  N  G  M  V  V  G  L  G  S  G  H  A  S  T  L  A  I  Q  Y  L  G  Q  K  L  R  A  G  T  I  K  D  V  T  A  I  P  T  *  V  E  S  I  D  P  N  K  *  G  K  Y  D  T  I  V  E  S  D  L  G  L  Y  V  F  F  V  G  S  S  *  C  R  L  T  C  L  L  N  R  H  T  P  C  Y  V  V  L  L  V  V  F  P  L  Q  L  *  G  V  L  R  N  D  F  T  L  E  L  S  I  S  G  F  I  R  *  I  V  D  T  *  N  </first_frame>
            <second_frame>  F  K  T  D  *  K  L  L  I  A  A  D  S  D  G  I  E  M  K  Q  K  *  A  T  W  L  W  L  W  L  C  L  L  Q  H  H  H  F  F  F  L  V  L  L  K  S  K  L  I  I  S  P  H  Q  E  N  P  S  I  A  L  L  L  V  L  L  S  L  M  I  S  S  *  P  P  N  T  L :   W  I  H  M  *  R  M  V  W  L  L  D  *  V  Q  V  M  L  L  H  W  L  Y  S  I  *  V  R  N  Y  E  L  V  L  *  K  M  S  L  P  Y  P  R  K  L  N  L  L  I  L  I  N  K  G  N  M  I  P  S  *  N  L  I  W  A  C  M  C  S  L  L  V  V  H  S  A  D  *  L  V  C  *  I  D  T  L  H  V  M  L  F  Y  S  S  C  S  H  F  N  Y  R  V  C  *  E  M  I  L  P  W  N  Y  Q  F  L  D  S  L  D  R  *  L  T  H  E  T </second_frame>
            <third_frame>   S  K  Q  I  E  N  C  *  *  Q  L  I  V  M  G  L  R  *  S  R  N  E  Q  H  G  Y  G  Y  G  F  A  F  F  N  I  T  I  S  F  F  L  Y  Y  S  K  A  S  S  *  F  H  L  I  K  K  T  P  P  S  L  C  Y  S  F  Y  S  L  *  *  S  L  P  S  R  Q  T  H   : C  G  F  I  C  E  E  W  Y  G  C  W  I  R  F  R  S  C  F  Y  I  G  Y  T  V  S  R  S  E  T  T  S  W  Y  Y  K  R  C  H  C  H  T  H  V  S  *  I  Y  *  S  *  *  I  R  E  I  *  Y  H  R  R  I  *  F  G  L  V  C  V  L  C  W  *  F  I  V  Q  I  N  L  F  V  E  *  T  H  S  M  L  C  C  F  T  R  R  V  P  T  S  T  I  G  C  V  E  K  *  F  Y  L  G  I  I  N  F  W  I  H  *  I  D  S  *  H  M  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17327" stop="17509"/>
                    <exon start="17692" stop="17823"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DEAEMSNMAMAMALPSSTSPFLFSCTTQKQAHNFTSSRKPLHRFVTRSTLSDDLFLAAKHTVDSYVKNGMVVGLGSGHASTLAIQYLGQKLRAGTIKDVTAIPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="17263" e_stop="17509"/>
            <exon e_start="17692" e_stop="17819"/>
            <exon e_start="18232" e_stop="18327"/>
            <exon e_start="18487" e_stop="18591"/>
            <exon e_start="18743" e_stop="18838"/>
            <exon e_start="18916" e_stop="18989"/>
            <exon e_start="19107" e_stop="19113"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.000" e_score="0.979"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="0.865"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="17263" e_stop="17509" e_length="247"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17510" i_stop="17691" i_length="182"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17692" e_stop="17819" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17820" i_stop="18231" i_length="412"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18232" e_stop="18327" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18328" i_stop="18486" i_length="159"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18487" e_stop="18591" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.978">
            <gDNA_intron_boundary i_start="18592" i_stop="18742" i_length="151"/>
          </intron>
          <exon e_serial="5" e_score="0.979">
            <gDNA_exon_boundary e_start="18743" e_stop="18838" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.911" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18839" i_stop="18915" i_length="77"/>
          </intron>
          <exon e_serial="6" e_score="0.865">
            <gDNA_exon_boundary e_start="18916" e_stop="18989" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18990" i_stop="19106" i_length="117"/>
          </intron>
          <exon e_serial="7" e_score="0.857">
            <gDNA_exon_boundary e_start="19107" e_stop="19113" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17263" stop="17509"/>
              <exon start="17692" stop="17819"/>
              <exon start="18232" stop="18327"/>
              <exon start="18487" stop="18591"/>
              <exon start="18743" stop="18838"/>
              <exon start="18916" stop="18989"/>
              <exon start="19107" stop="19113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554103" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCCTCTTATCTGTTTCAAAACAGATTGAAAACTGTTAATAGCAGCTGATAGTGATGGGATTGAGATGAAGCAGAAATGAGCAACATGGCTATGGCTATGGCTTTGCCTTCTTCAACATCACCATTTCTTTTTTCTTGTACTACTCAAAAGCAAGCTCATAATTTCACCTCATCAAGAAAACCCCTCCATCGCTTTGTTACTCGTTCTACTCTCTCTGATGATCTCTTCCTAGCCGCCAAACACACT : GTGGATTCATATGTGAAGAATGGTATGGTTGTTGGATTAGGTTCAGGTCATGCTTCTACATTGGCTATACAGTATCTAGGTCAGAAACTACGAGCTGGTACTATAAAAGATGTCACTGCCATACCCAC : GAGTAATCAGGAACACTCTGATGCAGATGTGTTAGCAGTGCAAGTGAAGCAGCAAAGGCAGGAATTCCTTTGGAACAGTATGATGACAGTTTAAAG : ATTGATCTAGCATTTGATGAAGCTGACATTATGGAAGAAGAAACACTTGCTGCAATTATTGGTCGACGAAAACTGCAGGGAGATGATTCTATAATTAAAGAGAAG : ACTATTTTAGAAGCAGCTGATCAACTGATATTTATTATAAAGGAAAAACAATTCAAGGGCGGTGTAGAAGGTTCAGTTCCAGTACTAATCAAATCT : GCTTATTCACTTCTCAGGTTAACTGGCTTGAAACAGCTGAAGAAATAGACGACCTCTTCCTCGGTGATGCAGAG : GTTTGGA</gDNA_template>
            <first_frame> A  L  L  S  V  S  K  Q  I  E  N  C  *  *  Q  L  I  V  M  G  L  R  *  S  R  N  E  Q  H  G  Y  G  Y  G  F  A  F  F  N  I  T  I  S  F  F  L  Y  Y  S  K  A  S  S  *  F  H  L  I  K  K  T  P  P  S  L  C  Y  S  F  Y  S  L  *  *  S  L  P  S  R  Q  T  H   : C  G  F  I  C  E  E  W  Y  G  C  W  I  R  F  R  S  C  F  Y  I  G  Y  T  V  S  R  S  E  T  T  S  W  Y  Y  K  R  C  H  C  H  T  H  :  E  *  S  G  T  L  *  C  R  C  V  S  S  A  S  E  A  A  K  A  G  I  P  L  E  Q  Y  D  D  S  L  K  :  I  D  L  A  F  D  E  A  D  I  M  E  E  E  T  L  A  A  I  I  G  R  R  K  L  Q  G  D  D  S  I  I  K  E  K  :  T  I  L  E  A  A  D  Q  L  I  F  I  I  K  E  K  Q  F  K  G  G  V  E  G  S  V  P  V  L  I  K  S  :  A  Y  S  L  L  R  L  T  G  L  K  Q  L  K  K  *  T  T  S  S  S  V  M  Q  R :   F  G </first_frame>
            <second_frame>  P  S  Y  L  F  Q  N  R  L  K  T  V  N  S  S  *  *  *  W  D  *  D  E  A  E  M  S  N  M  A  M  A  M  A  L  P  S  S  T  S  P  F  L  F  S  C  T  T  Q  K  Q  A  H  N  F  T  S  S  R  K  P  L  H  R  F  V  T  R  S  T  L  S  D  D  L  F  L  A  A  K  H  T  :  V  D  S  Y  V  K  N  G  M  V  V  G  L  G  S  G  H  A  S  T  L  A  I  Q  Y  L  G  Q  K  L  R  A  G  T  I  K  D  V  T  A  I  P  T :   S  N  Q  E  H  S  D  A  D  V  L  A  V  Q  V  K  Q  Q  R  Q  E  F  L  W  N  S  M  M  T  V  *  R :   L  I  *  H  L  M  K  L  T  L  W  K  K  K  H  L  L  Q  L  L  V  D  E  N  C  R  E  M  I  L  *  L  K  R  R :   L  F  *  K  Q  L  I  N  *  Y  L  L  *  R  K  N  N  S  R  A  V  *  K  V  Q  F  Q  Y  *  S  N  L :   L  I  H  F  S  G  *  L  A  *  N  S  *  R  N  R  R  P  L  P  R  *  C  R   : G  L   </second_frame>
            <third_frame>   P  L  I  C  F  K  T  D  *  K  L  L  I  A  A  D  S  D  G  I  E  M  K  Q  K  *  A  T  W  L  W  L  W  L  C  L  L  Q  H  H  H  F  F  F  L  V  L  L  K  S  K  L  I  I  S  P  H  Q  E  N  P  S  I  A  L  L  L  V  L  L  S  L  M  I  S  S  *  P  P  N  T  L :   W  I  H  M  *  R  M  V  W  L  L  D  *  V  Q  V  M  L  L  H  W  L  Y  S  I  *  V  R  N  Y  E  L  V  L  *  K  M  S  L  P  Y  P   : R  V  I  R  N  T  L  M  Q  M  C  *  Q  C  K  *  S  S  K  G  R  N  S  F  G  T  V  *  *  Q  F  K   : D  *  S  S  I  *  *  S  *  H  Y  G  R  R  N  T  C  C  N  Y  W  S  T  K  T  A  G  R  *  F  Y  N  *  R  E   : D  Y  F  R  S  S  *  S  T  D  I  Y  Y  K  G  K  T  I  Q  G  R  C  R  R  F  S  S  S  T  N  Q  I   : C  L  F  T  S  Q  V  N  W  L  E  T  A  E  E  I  D  D  L  F  L  G  D  A  E  :  V  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17327" stop="17509"/>
                    <exon start="17692" stop="17819"/>
                    <exon start="18232" stop="18325"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DEAEMSNMAMAMALPSSTSPFLFSCTTQKQAHNFTSSRKPLHRFVTRSTLSDDLFLAAKHTVDSYVKNGMVVGLGSGHASTLAIQYLGQKLRAGTIKDVTAIPTSNQEHSDADVLAVQVKQQRQEFLWNSMMTV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18253" stop="18327"/>
                    <exon start="18487" stop="18591"/>
                    <exon start="18743" stop="18838"/>
                    <exon start="18916" stop="18963"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRCVSSASEAAKAGIPLEQYDDSLKIDLAFDEADIMEEETLAAIIGRRKLQGDDSIIKEKTILEAADQLIFIIKEKQFKGGVEGSVPVLIKSAYSLLRLTGLKQLKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="20378" PGL_stop="19920"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20378" e_stop="19920"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="20378" e_stop="19920" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20378" stop="19920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTATTCGAATACGAAATTAAATTACAATACACACAAAAAGAATAGTTTAATTTTTCTCTCTTTAAACTAAGGAGTGAAAGAAAAAAACAAAATAAAAATAAAAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCATAAATAATTTTTTTAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTGTAACGGCAGGGGTATATGAGTCGTTTGTATAACAGCAAGGGCATATATGAGCCACTTTTATAACGAGGGGTATATCAGCTCTAAATGACAAAGTTGAGGGGTATATCAGACCGTTTTCCCTTGTTTTTATATATTAATTC</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  I  R  I  R  N  *  I  T  I  H  T  K  R  I  V  *  F  F  S  L  *  T  K  E  *  K  K  K  T  K  *  K  *  K  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  P  I  N  N  F  F  K  K  I  R  S  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  V  Y  V  S  H  F  V  T  A  G  V  Y  E  S  F  V  *  Q  Q  G  H  I  *  A  T  F  I  T  R  G  I  S  A  L  N  D  K  V  E  G  Y  I  R  P  F  S  L  V  F  I  Y  *  F </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  L  F  E  Y  E  I  K  L  Q  Y  T  Q  K  E  *  F  N  F  S  L  F  K  L  R  S  E  R  K  K  Q  N  K  N  K  K  L  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  P  *  I  I  F  L  K  K  L  E  V  T  N  I  N  L  K  L  I  F  *  L  P  L  N  E  G  Y  M  *  V  I  L  *  R  Q  G  Y  M  S  R  L  Y  N  S  K  G  I  Y  E  P  L  L  *  R  G  V  Y  Q  L  *  M  T  K  L  R  G  I  S  D  R  F  P  L  F  L  Y  I  N   </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  Y  S  N  T  K  L  N  Y  N  T  H  K  K  N  S  L  I  F  L  S  L  N  *  G  V  K  E  K  N  K  I  K  I  K  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  T  H  K  *  F  F  *  K  N  *  K  *  Q  I  *  I  *  N  *  F  F  N  F  R  *  M  K  G  I  C  E  S  F  C  N  G  R  G  I  *  V  V  C  I  T  A  R  A  Y  M  S  H  F  Y  N  E  G  Y  I  S  S  K  *  Q  S  *  G  V  Y  Q  T  V  F  P  C  F  Y  I  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0045L06.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="23428" PGL_stop="21298"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22956" e_stop="22847"/>
            <exon e_start="22768" e_stop="22364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.945" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22956" e_stop="22847" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.945">
            <gDNA_intron_boundary i_start="22846" i_stop="22769" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22768" e_stop="22364" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22956" stop="22847"/>
              <exon start="22768" stop="22364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22956" stop="22847"/>
              <exon start="22768" stop="22364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22956" stop="22847"/>
              <exon start="22768" stop="22365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250569" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTGCACAGGGAACAATATCATTTGGTGTTGGCTTTTTCTTTGTTATAATTGGTTGGCCCATACTGGGTATGATTCTTGAGGCATATGGATTTGTCGTACTTTTCAG : TGGTTTCTGGCCAACATTGGCAGTTTTTCTTCAGAAGATACCTATTCTAGGTTGGATCTTCCAGCAGCCCTATATCAGATCGGTATGTTTGATTGCATTGTTCATACTTTATTCTTGTATTTCTTTAAGTTTGGGGGAATCATTAGTTTTTTAGAAAGCATTTTCTTACTTCAATTGTGTATAGTCCTTTCGTTCTGACCTTAATAGATTGGTTGGACAATGATATGCTTGTGGTAGAAAGGAACCAATGGCTGATATATGGTGTAGGAGATAATCCATAGATTTTACAGAGAAACATCTGGAAGTAGTCTTAAGTGCCTTGTATTTTGCTTATATTATGACTAGGCTGTACAATAATCACCAAGGATCATAGAAGGAACAAAATGAAATTGCCATTTTTTCACC</gDNA_template>
            <first_frame> F  F  A  Q  G  T  I  S  F  G  V  G  F  F  F  V  I  I  G  W  P  I  L  G  M  I  L  E  A  Y  G  F  V  V  L  F  S :   G  F  W  P  T  L  A  V  F  L  Q  K  I  P  I  L  G  W  I  F  Q  Q  P  Y  I  R  S  V  C  L  I  A  L  F  I  L  Y  S  C  I  S  L  S  L  G  E  S  L  V  F  *  K  A  F  S  Y  F  N  C  V  *  S  F  R  S  D  L  N  R  L  V  G  Q  *  Y  A  C  G  R  K  E  P  M  A  D  I  W  C  R  R  *  S  I  D  F  T  E  K  H  L  E  V  V  L  S  A  L  Y  F  A  Y  I  M  T  R  L  Y  N  N  H  Q  G  S  *  K  E  Q  N  E  I  A  I  F  S   </first_frame>
            <second_frame>  F  L  H  R  E  Q  Y  H  L  V  L  A  F  S  L  L  *  L  V  G  P  Y  W  V  *  F  L  R  H  M  D  L  S  Y  F  S   : V  V  S  G  Q  H  W  Q  F  F  F  R  R  Y  L  F  *  V  G  S  S  S  S  P  I  S  D  R  Y  V  *  L  H  C  S  Y  F  I  L  V  F  L  *  V  W  G  N  H  *  F  F  R  K  H  F  L  T  S  I  V  Y  S  P  F  V  L  T  L  I  D  W  L  D  N  D  M  L  V  V  E  R  N  Q  W  L  I  Y  G  V  G  D  N  P  *  I  L  Q  R  N  I  W  K  *  S  *  V  P  C  I  L  L  I  L  *  L  G  C  T  I  I  T  K  D  H  R  R  N  K  M  K  L  P  F  F  H  </second_frame>
            <third_frame>   F  C  T  G  N  N  I  I  W  C  W  L  F  L  C  Y  N  W  L  A  H  T  G  Y  D  S  *  G  I  W  I  C  R  T  F  Q  :  W  F  L  A  N  I  G  S  F  S  S  E  D  T  Y  S  R  L  D  L  P  A  A  L  Y  Q  I  G  M  F  D  C  I  V  H  T  L  F  L  Y  F  F  K  F  G  G  I  I  S  F  L  E  S  I  F  L  L  Q  L  C  I  V  L  S  F  *  P  *  *  I  G  W  T  M  I  C  L  W  *  K  G  T  N  G  *  Y  M  V  *  E  I  I  H  R  F  Y  R  E  T  S  G  S  S  L  K  C  L  V  F  C  L  Y  Y  D  *  A  V  Q  *  S  P  R  I  I  E  G  T  K  *  N  C  H  F  F  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22956" stop="22847"/>
                    <exon start="22768" stop="22615"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFAQGTISFGVGFFFVIIGWPILGMILEAYGFVVLFSGFWPTLAVFLQKIPILGWIFQQPYIRSVCLIALFILYSCISLSLGESLVF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22873" stop="22847"/>
                    <exon start="22768" stop="22571"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIWICRTFQWFLANIGSFSSEDTYSRLDLPAALYQIGMFDCIVHTLFLYFFKFGGIISFLESIFLLQLCIVLSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="23428" e_stop="23423"/>
            <exon e_start="23361" e_stop="23270"/>
            <exon e_start="23145" e_stop="23065"/>
            <exon e_start="22944" e_stop="22847"/>
            <exon e_start="22768" e_stop="22687"/>
            <exon e_start="21569" e_stop="21298"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.750" acc_prob="0.815" e_score="0.667"/>
          <exon-intron don_prob="0.994" acc_prob="0.979" e_score="0.870"/>
          <exon-intron don_prob="0.401" acc_prob="0.974" e_score="0.951"/>
          <exon-intron don_prob="0.988" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="23428" e_stop="23423" e_length="6"/>
          </exon>
          <intron i_serial="1" don_prob="0.750" acc_prob="0.815">
            <gDNA_intron_boundary i_start="23422" i_stop="23362" i_length="61"/>
          </intron>
          <exon e_serial="2" e_score="0.870">
            <gDNA_exon_boundary e_start="23361" e_stop="23270" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.979">
            <gDNA_intron_boundary i_start="23269" i_stop="23146" i_length="124"/>
          </intron>
          <exon e_serial="3" e_score="0.951">
            <gDNA_exon_boundary e_start="23145" e_stop="23065" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.401" acc_prob="0.974">
            <gDNA_intron_boundary i_start="23064" i_stop="22945" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22944" e_stop="22847" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.945">
            <gDNA_intron_boundary i_start="22846" i_stop="22769" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22768" e_stop="22687" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.976">
            <gDNA_intron_boundary i_start="22686" i_stop="21570" i_length="1117"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="21569" e_stop="21298" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23428" stop="23423"/>
              <exon start="23361" stop="23270"/>
              <exon start="23145" stop="23065"/>
              <exon start="22944" stop="22847"/>
              <exon start="22768" stop="22687"/>
              <exon start="21569" stop="21312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22873" stop="22847"/>
              <exon start="22768" stop="22687"/>
              <exon start="21569" stop="21298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229107" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGAA : AGATAGGGCTAGGATTGACGGGATTTGGAGTGTTTTTCTCATTCTTGGGGATCGTGTTCTTCTTTGACAAGGGACTAATTGCCATGGGAAAT : ATCCTCTTCTTCTCAGGGGTGGCACTGACCATTGGTCTCAAGTCATCACTACAGTTCTTTAGTAAACGTAGTAATTTCAAG : GGAACAATATCATTTGGTGTTGGCTTTTTCTTTGTTATAATTGGTTGGCCCATACTGGGTATGATTCTTGAGGCATATGGATTTGTCGTACTTTTCAG : TGGTTTCTGGCCAACATTGGCAGTTTTTCTTCAGAAGATACCTATTCTAGGTTGGATCTTCCAGCAGCCCTATATCAGATCG : TTCTTTGACCGCTACCGTGGAAAACGTGTCCCTGTGTAGTATCATTTTGAAAGATACAAAGCAAACAAGATTGATTAGTCCCGCTTGCACGAATTTGTAAGATTTTTATATCTAGAACAGGATGATAGTAATTGTTTGTTCCTAGTTGGTTGTATTGGCCTTTCTGTGCTGTAAATCAGATCATGTACCTAGTTACCAATATTATACTTTTGTTTTCTAGATGAAAGTGGAGAAAAAAACTTGATCTCCAGATCTTTAATCAATGGTACAAA</gDNA_template>
            <first_frame> K  E  :  R  *  G  *  D  *  R  D  L  E  C  F  S  H  S  W  G  S  C  S  S  L  T  R  D  *  L  P  W  E  I :   S  S  S  S  Q  G  W  H  *  P  L  V  S  S  H  H  Y  S  S  L  V  N  V  V  I  S  R :   E  Q  Y  H  L  V  L  A  F  S  L  L  *  L  V  G  P  Y  W  V  *  F  L  R  H  M  D  L  S  Y  F  S   : V  V  S  G  Q  H  W  Q  F  F  F  R  R  Y  L  F  *  V  G  S  S  S  S  P  I  S  D  R :   S  L  T  A  T  V  E  N  V  S  L  C  S  I  I  L  K  D  T  K  Q  T  R  L  I  S  P  A  C  T  N  L  *  D  F  Y  I  *  N  R  M  I  V  I  V  C  S  *  L  V  V  L  A  F  L  C  C  K  S  D  H  V  P  S  Y  Q  Y  Y  T  F  V  F  *  M  K  V  E  K  K  T  *  S  P  D  L  *  S  M  V  Q  </first_frame>
            <second_frame>  K  K :   D  R  A  R  I  D  G  I  W  S  V  F  L  I  L  G  D  R  V  L  L  *  Q  G  T  N  C  H  G  K   : Y  P  L  L  L  R  G  G  T  D  H  W  S  Q  V  I  T  T  V  L  *  *  T  *  *  F  Q   : G  N  N  I  I  W  C  W  L  F  L  C  Y  N  W  L  A  H  T  G  Y  D  S  *  G  I  W  I  C  R  T  F  Q  :  W  F  L  A  N  I  G  S  F  S  S  E  D  T  Y  S  R  L  D  L  P  A  A  L  Y  Q  I   : V  L  *  P  L  P  W  K  T  C  P  C  V  V  S  F  *  K  I  Q  S  K  Q  D  *  L  V  P  L  A  R  I  C  K  I  F  I  S  R  T  G  *  *  *  L  F  V  P  S  W  L  Y  W  P  F  C  A  V  N  Q  I  M  Y  L  V  T  N  I  I  L  L  F  S  R  *  K  W  R  K  K  L  D  L  Q  I  F  N  Q  W  Y  K </second_frame>
            <third_frame>   R   : K  I  G  L  G  L  T  G  F  G  V  F  F  S  F  L  G  I  V  F  F  F  D  K  G  L  I  A  M  G  N  :  I  L  F  F  S  G  V  A  L  T  I  G  L  K  S  S  L  Q  F  F  S  K  R  S  N  F  K  :  G  T  I  S  F  G  V  G  F  F  F  V  I  I  G  W  P  I  L  G  M  I  L  E  A  Y  G  F  V  V  L  F  S :   G  F  W  P  T  L  A  V  F  L  Q  K  I  P  I  L  G  W  I  F  Q  Q  P  Y  I  R  S  :  F  F  D  R  Y  R  G  K  R  V  P  V  *  Y  H  F  E  R  Y  K  A  N  K  I  D  *  S  R  L  H  E  F  V  R  F  L  Y  L  E  Q  D  D  S  N  C  L  F  L  V  G  C  I  G  L  S  V  L  *  I  R  S  C  T  *  L  P  I  L  Y  F  C  F  L  D  E  S  G  E  K  N  L  I  S  R  S  L  I  N  G  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23426" stop="23423"/>
                    <exon start="23361" stop="23270"/>
                    <exon start="23145" stop="23065"/>
                    <exon start="22944" stop="22847"/>
                    <exon start="22768" stop="22687"/>
                    <exon start="21569" stop="21531"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKIGLGLTGFGVFFSFLGIVFFFDKGLIAMGNILFFSGVALTIGLKSSLQFFSKRSNFKGTISFGVGFFFVIIGWPILGMILEAYGFVVLFSGFWPTLAVFLQKIPILGWIFQQPYIRSFFDRYRGKRVPV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="23835" PGL_stop="25629"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23835" e_stop="23948"/>
            <exon e_start="24055" e_stop="24149"/>
            <exon e_start="24294" e_stop="24423"/>
            <exon e_start="24784" e_stop="24928"/>
            <exon e_start="25014" e_stop="25629"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.804" acc_prob="0.866" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.867" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23835" e_stop="23948" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.804" acc_prob="0.866">
            <gDNA_intron_boundary i_start="23949" i_stop="24054" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24055" e_stop="24149" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24150" i_stop="24293" i_length="144"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24294" e_stop="24423" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.940">
            <gDNA_intron_boundary i_start="24424" i_stop="24783" i_length="360"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24784" e_stop="24928" e_length="145"/>
          </exon>
          <intron i_serial="4" don_prob="0.867" acc_prob="0.979">
            <gDNA_intron_boundary i_start="24929" i_stop="25013" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="25014" e_stop="25629" e_length="616"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23835" stop="23948"/>
              <exon start="24055" stop="24149"/>
              <exon start="24294" stop="24423"/>
              <exon start="24784" stop="24928"/>
              <exon start="25014" stop="25172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23900" stop="23948"/>
              <exon start="24055" stop="24149"/>
              <exon start="24294" stop="24423"/>
              <exon start="24784" stop="24928"/>
              <exon start="25014" stop="25172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23942" stop="23948"/>
              <exon start="24055" stop="24149"/>
              <exon start="24294" stop="24423"/>
              <exon start="24784" stop="24928"/>
              <exon start="25014" stop="25389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24074" stop="24149"/>
              <exon start="24294" stop="24423"/>
              <exon start="24784" stop="24928"/>
              <exon start="25014" stop="25079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24146" stop="24149"/>
              <exon start="24294" stop="24423"/>
              <exon start="24784" stop="24928"/>
              <exon start="25014" stop="25456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24299" stop="24423"/>
              <exon start="24784" stop="24928"/>
              <exon start="25014" stop="25530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24330" stop="24423"/>
              <exon start="24784" stop="24928"/>
              <exon start="25014" stop="25405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24330" stop="24423"/>
              <exon start="24784" stop="24928"/>
              <exon start="25014" stop="25315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24382" stop="24423"/>
              <exon start="24784" stop="24928"/>
              <exon start="25014" stop="25520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24791" stop="24928"/>
              <exon start="25014" stop="25318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24792" stop="24928"/>
              <exon start="25014" stop="25416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24795" stop="24928"/>
              <exon start="25014" stop="25304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25014" stop="25629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25033" stop="25503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25130" stop="25605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25182" stop="25551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25273" stop="25547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220756" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCACTGTCTTAGAAGCTATGTCAGCTCATGGAGTCCCCACATTGATTTACTCTAGTACATGTGCGACATATGGAGAGCCTGAAAAGATGCCTATTACCGAAGAAACTCCACAG : CTCCCTATTAATCCATATGGAAAAGCGAAGAAAATGGCAGAGGATATTATTTTGGATTTCCATAAGAACTCAAACATGGCTGTCATGATTTTGAG : GTACTTCAATGTGATTGGATCTGATCCAGAGGGAAGACTAGGAGAAGCTCCCCGGCCTGAACTTCGTGAACATGGGCGAATTTCTGGTGCTTGTTATGATGCAGCTCGTGGAATCATACCTGGTCTCAAG : GTTAGAGGAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAG : GTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTCGTGGATTTTTAGTATTGCTAGAGTAGTTTTTTTGGAAGCGAAAGAGGGGTCTATATTTTTTCGTTCATCTAGATTGAATTACATGACACAGTTTTGTGTATTAGTCAGCCTATTTATCCAGTCATATATGATGTGTATCTTAGTCTAGTAAAACATATATTTAGATCAATAATAGTTCTGGGCCAGTATAGCTTCGTCCCTCATCTATGCTCATTTGAATTTGTTGCGTGTTTATTCTTGATGTATATAGAAAACTGGGTGTTATAATTGCCTCCACTTTTGGAGAAATGGAAGTTGCTTCGACCATATCA</gDNA_template>
            <first_frame> L  T  V  L  E  A  M  S  A  H  G  V  P  T  L  I  Y  S  S  T  C  A  T  Y  G  E  P  E  K  M  P  I  T  E  E  T  P  Q  :  L  P  I  N  P  Y  G  K  A  K  K  M  A  E  D  I  I  L  D  F  H  K  N  S  N  M  A  V  M  I  L  R :   Y  F  N  V  I  G  S  D  P  E  G  R  L  G  E  A  P  R  P  E  L  R  E  H  G  R  I  S  G  A  C  Y  D  A  A  R  G  I  I  P  G  L  K  :  V  R  G  T  D  Y  K  T  T  D  G  T  C  I  R  D  Y  I  D  V  T  D  L  V  D  A  H  V  K  A  L  E  K  S  R  P  G  K  V  G  I  Y  N  V  G  T  G  R   : G  R  S  V  K  E  F  V  E  A  C  K  A  A  T  G  V  P  I  K  V  D  F  L  P  R  R  P  G  D  Y  A  E  V  F  S  D  P  T  K  I  K  L  E  L  N  W  T  A  Q  H  T  D  L  Q  E  S  L  Q  V  A  W  R  W  Q  K  S  H  L  N  G  Y  G  S  S  L  V  K  S  S  *  C  I  D  N  L  S  L  W  K  I  D  M  N  P  I  T  Q  L  N  I  V  V  D  F  *  Y  C  *  S  S  F  F  G  S  E  R  G  V  Y  I  F  S  F  I  *  I  E  L  H  D  T  V  L  C  I  S  Q  P  I  Y  P  V  I  Y  D  V  Y  L  S  L  V  K  H  I  F  R  S  I  I  V  L  G  Q  Y  S  F  V  P  H  L  C  S  F  E  F  V  A  C  L  F  L  M  Y  I  E  N  W  V  L  *  L  P  P  L  L  E  K  W  K  L  L  R  P  Y   </first_frame>
            <second_frame>  S  L  S  *  K  L  C  Q  L  M  E  S  P  H  *  F  T  L  V  H  V  R  H  M  E  S  L  K  R  C  L  L  P  K  K  L  H  S :   S  L  L  I  H  M  E  K  R  R  K  W  Q  R  I  L  F  W  I  S  I  R  T  Q  T  W  L  S  *  F  *   : G  T  S  M  *  L  D  L  I  Q  R  E  D  *  E  K  L  P  G  L  N  F  V  N  M  G  E  F  L  V  L  V  M  M  Q  L  V  E  S  Y  L  V  S  R :   L  E  E  Q  T  I  R  Q  Q  M  V  H  A  L  G  I  I  *  M  S  L  I  W  L  M  L  M  *  K  L  L  K  S  L  G  L  G  R  W  E  S  T  M  L  E  P  E  E  :  V  D  Q  *  R  N  L  W  R  L  A  R  Q  P  L  E  F  L  S  K  L  T  S  F  L  V  A  L  V  I  M  Q  K  S  L  V  I  L  L  R  *  N  L  N  *  T  G  Q  P  N  T  L  I  F  K  R  V  C  R  L  H  G  D  G  R  N  H  T  L  M  V  M  V  H  L  W  S  S  L  R  N  A  L  T  T  Y  R  C  G  R  S  T  *  T  P  S  H  S  L  T  L  S  W  I  F  S  I  A  R  V  V  F  L  E  A  K  E  G  S  I  F  F  R  S  S  R  L  N  Y  M  T  Q  F  C  V  L  V  S  L  F  I  Q  S  Y  M  M  C  I  L  V  *  *  N  I  Y  L  D  Q  *  *  F  W  A  S  I  A  S  S  L  I  Y  A  H  L  N  L  L  R  V  Y  S  *  C  I  *  K  T  G  C  Y  N  C  L  H  F  W  R  N  G  S  C  F  D  H  I  </second_frame>
            <third_frame>   H  C  L  R  S  Y  V  S  S  W  S  P  H  I  D  L  L  *  Y  M  C  D  I  W  R  A  *  K  D  A  Y  Y  R  R  N  S  T   : A  P  Y  *  S  I  W  K  S  E  E  N  G  R  G  Y  Y  F  G  F  P  *  E  L  K  H  G  C  H  D  F  E  :  V  L  Q  C  D  W  I  *  S  R  G  K  T  R  R  S  S  P  A  *  T  S  *  T  W  A  N  F  W  C  L  L  *  C  S  S  W  N  H  T  W  S  Q   : G  *  R  N  R  L  *  D  N  R  W  Y  M  H  *  G  L  Y  R  C  H  *  S  G  *  C  S  C  E  S  S  *  K  V  *  A  W  E  G  G  N  L  Q  C  W  N  R  K  R :   *  I  S  E  G  I  C  G  G  L  Q  G  S  H  W  S  S  Y  Q  S  *  L  P  S  S  S  P  W  *  L  C  R  S  L  *  *  S  Y  *  D  K  T  *  T  E  L  D  S  P  T  H  *  S  S  R  E  F  A  G  C  M  E  M  A  E  I  T  P  *  W  L  W  F  I  S  G  Q  V  F  V  M  H  *  Q  L  I  V  V  E  D  R  H  E  P  H  H  T  A  *  H  C  R  G  F  L  V  L  L  E  *  F  F  W  K  R  K  R  G  L  Y  F  F  V  H  L  D  *  I  T  *  H  S  F  V  Y  *  S  A  Y  L  S  S  H  I  *  C  V  S  *  S  S  K  T  Y  I  *  I  N  N  S  S  G  P  V  *  L  R  P  S  S  M  L  I  *  I  C  C  V  F  I  L  D  V  Y  R  K  L  G  V  I  I  A  S  T  F  G  E  M  E  V  A  S  T  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23835" stop="23948"/>
                    <exon start="24055" stop="24149"/>
                    <exon start="24294" stop="24423"/>
                    <exon start="24784" stop="24928"/>
                    <exon start="25014" stop="25255"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTVLEAMSAHGVPTLIYSSTCATYGEPEKMPITEETPQLPINPYGKAKKMAEDIILDFHKNSNMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACYDAARGIIPGLKVRGTDYKTTDGTCIRDYIDVTDLVDAHVKALEKSRPGKVGIYNVGTGRGRSVKEFVEACKAATGVPIKVDFLPRRPGDYAEVFSDPTKIKLELNWTAQHTDLQESLQVAWRWQKSHLNGYGSSLVKSS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25391" stop="25585"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IELHDTVLCISQPIYPVIYDVYLSLVKHIFRSIIVLGQYSFVPHLCSFEFVACLFLMYIENWVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="23835" e_stop="23948"/>
            <exon e_start="24055" e_stop="24149"/>
            <exon e_start="24294" e_stop="24423"/>
            <exon e_start="24784" e_stop="24928"/>
            <exon e_start="25014" e_stop="25508"/>
            <exon e_start="25569" e_stop="25574"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.804" acc_prob="0.866" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.867" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.675" e_score="0.996"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23835" e_stop="23948" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.804" acc_prob="0.866">
            <gDNA_intron_boundary i_start="23949" i_stop="24054" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24055" e_stop="24149" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24150" i_stop="24293" i_length="144"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24294" e_stop="24423" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.940">
            <gDNA_intron_boundary i_start="24424" i_stop="24783" i_length="360"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24784" e_stop="24928" e_length="145"/>
          </exon>
          <intron i_serial="4" don_prob="0.867" acc_prob="0.979">
            <gDNA_intron_boundary i_start="24929" i_stop="25013" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="25014" e_stop="25508" e_length="495"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.675">
            <gDNA_intron_boundary i_start="25509" i_stop="25568" i_length="60"/>
          </intron>
          <exon e_serial="6" e_score="0.667">
            <gDNA_exon_boundary e_start="25569" e_stop="25574" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23835" stop="23948"/>
              <exon start="24055" stop="24149"/>
              <exon start="24294" stop="24423"/>
              <exon start="24784" stop="24928"/>
              <exon start="25014" stop="25172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23900" stop="23948"/>
              <exon start="24055" stop="24149"/>
              <exon start="24294" stop="24423"/>
              <exon start="24784" stop="24928"/>
              <exon start="25014" stop="25172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23942" stop="23948"/>
              <exon start="24055" stop="24149"/>
              <exon start="24294" stop="24423"/>
              <exon start="24784" stop="24928"/>
              <exon start="25014" stop="25389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24074" stop="24149"/>
              <exon start="24294" stop="24423"/>
              <exon start="24784" stop="24928"/>
              <exon start="25014" stop="25079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24146" stop="24149"/>
              <exon start="24294" stop="24423"/>
              <exon start="24784" stop="24928"/>
              <exon start="25014" stop="25456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24330" stop="24423"/>
              <exon start="24784" stop="24928"/>
              <exon start="25014" stop="25405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24330" stop="24423"/>
              <exon start="24784" stop="24928"/>
              <exon start="25014" stop="25315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24791" stop="24928"/>
              <exon start="25014" stop="25508"/>
              <exon start="25569" stop="25574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24791" stop="24928"/>
              <exon start="25014" stop="25318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24792" stop="24928"/>
              <exon start="25014" stop="25416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24795" stop="24928"/>
              <exon start="25014" stop="25304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25033" stop="25503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454317" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCACTGTCTTAGAAGCTATGTCAGCTCATGGAGTCCCCACATTGATTTACTCTAGTACATGTGCGACATATGGAGAGCCTGAAAAGATGCCTATTACCGAAGAAACTCCACAG : CTCCCTATTAATCCATATGGAAAAGCGAAGAAAATGGCAGAGGATATTATTTTGGATTTCCATAAGAACTCAAACATGGCTGTCATGATTTTGAG : GTACTTCAATGTGATTGGATCTGATCCAGAGGGAAGACTAGGAGAAGCTCCCCGGCCTGAACTTCGTGAACATGGGCGAATTTCTGGTGCTTGTTATGATGCAGCTCGTGGAATCATACCTGGTCTCAAG : GTTAGAGGAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAG : GTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTCGTGGATTTTTAGTATTGCTAGAGTAGTTTTTTTGGAAGCGAAAGAGGGGTCTATATTTTTTCGTTCATCTAGATTGAATTACATGACACAGTTTTGTGTATTAGTCAGCCTATTTATCCAGTCATATATGATGTGTATCTTAGTCTAGTAAAACATATATTTAGATCAATAATAGTTCTGGGCCAGTATA : AAAACT</gDNA_template>
            <first_frame> L  T  V  L  E  A  M  S  A  H  G  V  P  T  L  I  Y  S  S  T  C  A  T  Y  G  E  P  E  K  M  P  I  T  E  E  T  P  Q  :  L  P  I  N  P  Y  G  K  A  K  K  M  A  E  D  I  I  L  D  F  H  K  N  S  N  M  A  V  M  I  L  R :   Y  F  N  V  I  G  S  D  P  E  G  R  L  G  E  A  P  R  P  E  L  R  E  H  G  R  I  S  G  A  C  Y  D  A  A  R  G  I  I  P  G  L  K  :  V  R  G  T  D  Y  K  T  T  D  G  T  C  I  R  D  Y  I  D  V  T  D  L  V  D  A  H  V  K  A  L  E  K  S  R  P  G  K  V  G  I  Y  N  V  G  T  G  R   : G  R  S  V  K  E  F  V  E  A  C  K  A  A  T  G  V  P  I  K  V  D  F  L  P  R  R  P  G  D  Y  A  E  V  F  S  D  P  T  K  I  K  L  E  L  N  W  T  A  Q  H  T  D  L  Q  E  S  L  Q  V  A  W  R  W  Q  K  S  H  L  N  G  Y  G  S  S  L  V  K  S  S  *  C  I  D  N  L  S  L  W  K  I  D  M  N  P  I  T  Q  L  N  I  V  V  D  F  *  Y  C  *  S  S  F  F  G  S  E  R  G  V  Y  I  F  S  F  I  *  I  E  L  H  D  T  V  L  C  I  S  Q  P  I  Y  P  V  I  Y  D  V  Y  L  S  L  V  K  H  I  F  R  S  I  I  V  L  G  Q  Y   : K  N  </first_frame>
            <second_frame>  S  L  S  *  K  L  C  Q  L  M  E  S  P  H  *  F  T  L  V  H  V  R  H  M  E  S  L  K  R  C  L  L  P  K  K  L  H  S :   S  L  L  I  H  M  E  K  R  R  K  W  Q  R  I  L  F  W  I  S  I  R  T  Q  T  W  L  S  *  F  *   : G  T  S  M  *  L  D  L  I  Q  R  E  D  *  E  K  L  P  G  L  N  F  V  N  M  G  E  F  L  V  L  V  M  M  Q  L  V  E  S  Y  L  V  S  R :   L  E  E  Q  T  I  R  Q  Q  M  V  H  A  L  G  I  I  *  M  S  L  I  W  L  M  L  M  *  K  L  L  K  S  L  G  L  G  R  W  E  S  T  M  L  E  P  E  E  :  V  D  Q  *  R  N  L  W  R  L  A  R  Q  P  L  E  F  L  S  K  L  T  S  F  L  V  A  L  V  I  M  Q  K  S  L  V  I  L  L  R  *  N  L  N  *  T  G  Q  P  N  T  L  I  F  K  R  V  C  R  L  H  G  D  G  R  N  H  T  L  M  V  M  V  H  L  W  S  S  L  R  N  A  L  T  T  Y  R  C  G  R  S  T  *  T  P  S  H  S  L  T  L  S  W  I  F  S  I  A  R  V  V  F  L  E  A  K  E  G  S  I  F  F  R  S  S  R  L  N  Y  M  T  Q  F  C  V  L  V  S  L  F  I  Q  S  Y  M  M  C  I  L  V  *  *  N  I  Y  L  D  Q  *  *  F  W  A  S  I  :  K  T </second_frame>
            <third_frame>   H  C  L  R  S  Y  V  S  S  W  S  P  H  I  D  L  L  *  Y  M  C  D  I  W  R  A  *  K  D  A  Y  Y  R  R  N  S  T   : A  P  Y  *  S  I  W  K  S  E  E  N  G  R  G  Y  Y  F  G  F  P  *  E  L  K  H  G  C  H  D  F  E  :  V  L  Q  C  D  W  I  *  S  R  G  K  T  R  R  S  S  P  A  *  T  S  *  T  W  A  N  F  W  C  L  L  *  C  S  S  W  N  H  T  W  S  Q   : G  *  R  N  R  L  *  D  N  R  W  Y  M  H  *  G  L  Y  R  C  H  *  S  G  *  C  S  C  E  S  S  *  K  V  *  A  W  E  G  G  N  L  Q  C  W  N  R  K  R :   *  I  S  E  G  I  C  G  G  L  Q  G  S  H  W  S  S  Y  Q  S  *  L  P  S  S  S  P  W  *  L  C  R  S  L  *  *  S  Y  *  D  K  T  *  T  E  L  D  S  P  T  H  *  S  S  R  E  F  A  G  C  M  E  M  A  E  I  T  P  *  W  L  W  F  I  S  G  Q  V  F  V  M  H  *  Q  L  I  V  V  E  D  R  H  E  P  H  H  T  A  *  H  C  R  G  F  L  V  L  L  E  *  F  F  W  K  R  K  R  G  L  Y  F  F  V  H  L  D  *  I  T  *  H  S  F  V  Y  *  S  A  Y  L  S  S  H  I  *  C  V  S  *  S  S  K  T  Y  I  *  I  N  N  S  S  G  P  V  * :   K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23835" stop="23948"/>
                    <exon start="24055" stop="24149"/>
                    <exon start="24294" stop="24423"/>
                    <exon start="24784" stop="24928"/>
                    <exon start="25014" stop="25255"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTVLEAMSAHGVPTLIYSSTCATYGEPEKMPITEETPQLPINPYGKAKKMAEDIILDFHKNSNMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACYDAARGIIPGLKVRGTDYKTTDGTCIRDYIDVTDLVDAHVKALEKSRPGKVGIYNVGTGRGRSVKEFVEACKAATGVPIKVDFLPRRPGDYAEVFSDPTKIKLELNWTAQHTDLQESLQVAWRWQKSHLNGYGSSLVKSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="24773" e_stop="24928"/>
            <exon e_start="25014" e_stop="25629"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.867" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24773" e_stop="24928" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.867" acc_prob="0.979">
            <gDNA_intron_boundary i_start="24929" i_stop="25013" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="25014" e_stop="25629" e_length="616"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24773" stop="24928"/>
              <exon start="25014" stop="25540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424726" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24791" stop="24928"/>
              <exon start="25014" stop="25318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24792" stop="24928"/>
              <exon start="25014" stop="25416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24795" stop="24928"/>
              <exon start="25014" stop="25304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25014" stop="25629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25033" stop="25503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25130" stop="25605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25182" stop="25551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25273" stop="25547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220756" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTCGTGCAGGTTAGAGGAACAGACTATAAGACAACAGATGGTACATGCATTAGGGATTATATAGATGTCACTGATCTGGTTGATGCTCATGTGAAAGCTCTTGAAAAGTCTAGGCCTGGGAAGGTGGGAATCTACAATGTTGGAACCGGAAGAG : GTAGATCAGTGAAGGAATTTGTGGAGGCTTGCAAGGCAGCCACTGGAGTTCCTATCAAAGTTGACTTCCTTCCTCGTCGCCCTGGTGATTATGCAGAAGTCTTTAGTGATCCTACTAAGATAAAACTTGAACTGAACTGGACAGCCCAACACACTGATCTTCAAGAGAGTTTGCAGGTTGCATGGAGATGGCAGAAATCACACCTTAATGGTTATGGTTCATCTCTGGTCAAGTCTTCGTAATGCATTGACAACTTATCGTTGTGGAAGATCGACATGAACCCCATCACACAGCTTAACATTGTCGTGGATTTTTAGTATTGCTAGAGTAGTTTTTTTGGAAGCGAAAGAGGGGTCTATATTTTTTCGTTCATCTAGATTGAATTACATGACACAGTTTTGTGTATTAGTCAGCCTATTTATCCAGTCATATATGATGTGTATCTTAGTCTAGTAAAACATATATTTAGATCAATAATAGTTCTGGGCCAGTATAGCTTCGTCCCTCATCTATGCTCATTTGAATTTGTTGCGTGTTTATTCTTGATGTATATAGAAAACTGGGTGTTATAATTGCCTCCACTTTTGGAGAAATGGAAGTTGCTTCGACCATATCA</gDNA_template>
            <first_frame> S  S  C  R  L  E  E  Q  T  I  R  Q  Q  M  V  H  A  L  G  I  I  *  M  S  L  I  W  L  M  L  M  *  K  L  L  K  S  L  G  L  G  R  W  E  S  T  M  L  E  P  E  E  :  V  D  Q  *  R  N  L  W  R  L  A  R  Q  P  L  E  F  L  S  K  L  T  S  F  L  V  A  L  V  I  M  Q  K  S  L  V  I  L  L  R  *  N  L  N  *  T  G  Q  P  N  T  L  I  F  K  R  V  C  R  L  H  G  D  G  R  N  H  T  L  M  V  M  V  H  L  W  S  S  L  R  N  A  L  T  T  Y  R  C  G  R  S  T  *  T  P  S  H  S  L  T  L  S  W  I  F  S  I  A  R  V  V  F  L  E  A  K  E  G  S  I  F  F  R  S  S  R  L  N  Y  M  T  Q  F  C  V  L  V  S  L  F  I  Q  S  Y  M  M  C  I  L  V  *  *  N  I  Y  L  D  Q  *  *  F  W  A  S  I  A  S  S  L  I  Y  A  H  L  N  L  L  R  V  Y  S  *  C  I  *  K  T  G  C  Y  N  C  L  H  F  W  R  N  G  S  C  F  D  H  I  </first_frame>
            <second_frame>  R  R  A  G  *  R  N  R  L  *  D  N  R  W  Y  M  H  *  G  L  Y  R  C  H  *  S  G  *  C  S  C  E  S  S  *  K  V  *  A  W  E  G  G  N  L  Q  C  W  N  R  K  R :   *  I  S  E  G  I  C  G  G  L  Q  G  S  H  W  S  S  Y  Q  S  *  L  P  S  S  S  P  W  *  L  C  R  S  L  *  *  S  Y  *  D  K  T  *  T  E  L  D  S  P  T  H  *  S  S  R  E  F  A  G  C  M  E  M  A  E  I  T  P  *  W  L  W  F  I  S  G  Q  V  F  V  M  H  *  Q  L  I  V  V  E  D  R  H  E  P  H  H  T  A  *  H  C  R  G  F  L  V  L  L  E  *  F  F  W  K  R  K  R  G  L  Y  F  F  V  H  L  D  *  I  T  *  H  S  F  V  Y  *  S  A  Y  L  S  S  H  I  *  C  V  S  *  S  S  K  T  Y  I  *  I  N  N  S  S  G  P  V  *  L  R  P  S  S  M  L  I  *  I  C  C  V  F  I  L  D  V  Y  R  K  L  G  V  I  I  A  S  T  F  G  E  M  E  V  A  S  T  I  S </second_frame>
            <third_frame>   V  V  Q  V  R  G  T  D  Y  K  T  T  D  G  T  C  I  R  D  Y  I  D  V  T  D  L  V  D  A  H  V  K  A  L  E  K  S  R  P  G  K  V  G  I  Y  N  V  G  T  G  R   : G  R  S  V  K  E  F  V  E  A  C  K  A  A  T  G  V  P  I  K  V  D  F  L  P  R  R  P  G  D  Y  A  E  V  F  S  D  P  T  K  I  K  L  E  L  N  W  T  A  Q  H  T  D  L  Q  E  S  L  Q  V  A  W  R  W  Q  K  S  H  L  N  G  Y  G  S  S  L  V  K  S  S  *  C  I  D  N  L  S  L  W  K  I  D  M  N  P  I  T  Q  L  N  I  V  V  D  F  *  Y  C  *  S  S  F  F  G  S  E  R  G  V  Y  I  F  S  F  I  *  I  E  L  H  D  T  V  L  C  I  S  Q  P  I  Y  P  V  I  Y  D  V  Y  L  S  L  V  K  H  I  F  R  S  I  I  V  L  G  Q  Y  S  F  V  P  H  L  C  S  F  E  F  V  A  C  L  F  L  M  Y  I  E  N  W  V  L  *  L  P  P  L  L  E  K  W  K  L  L  R  P  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24775" stop="24928"/>
                    <exon start="25014" stop="25255"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVQVRGTDYKTTDGTCIRDYIDVTDLVDAHVKALEKSRPGKVGIYNVGTGRGRSVKEFVEACKAATGVPIKVDFLPRRPGDYAEVFSDPTKIKLELNWTAQHTDLQESLQVAWRWQKSHLNGYGSSLVKSS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25391" stop="25585"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IELHDTVLCISQPIYPVIYDVYLSLVKHIFRSIIVLGQYSFVPHLCSFEFVACLFLMYIENWVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="29860" PGL_stop="25705"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29860" e_stop="29761"/>
            <exon e_start="29684" e_stop="29527"/>
            <exon e_start="28137" e_stop="27706"/>
            <exon e_start="26222" e_stop="25705"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.401" acc_prob="0.955" e_score="0.960"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="0.975"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="0.977"/>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="29860" e_stop="29761" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.401" acc_prob="0.955">
            <gDNA_intron_boundary i_start="29760" i_stop="29685" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="29684" e_stop="29527" e_length="158"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="29526" i_stop="28138" i_length="1389"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="28137" e_stop="27706" e_length="432"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="27705" i_stop="26223" i_length="1483"/>
          </intron>
          <exon e_serial="4" e_score="0.925">
            <gDNA_exon_boundary e_start="26222" e_stop="25705" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29860" stop="29761"/>
              <exon start="29684" stop="29527"/>
              <exon start="28137" stop="27706"/>
              <exon start="26222" stop="26179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29860" stop="29761"/>
              <exon start="29684" stop="29527"/>
              <exon start="28137" stop="27720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27754" stop="27706"/>
              <exon start="26222" stop="25705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420262" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATTCAGGTTATGTTCGAATGTGGCAAATACAATTTGGTTCATGACTTTTTCAAGAAAATGCAGAAGTCATGTGTTCCCAATGCTTTGACCTATAAAG : TTATTGTGAGTACTCTTTGGAAGGAAGGGAAAACAGACGAGGCCTTACTGGCAGTAGAAGACATGGAGCGACGAGGAATCGTGGGCACTGCCAGTTTGTATTATGACCTTGCTCGTTGCCTTTGTAGTGCAGGGAGGTGTGAAGAGGCGCTGATGCAA : ATGGGAAAGATATGCAAAGTTGCTACGAAGCCTCTAGTGGTGACTTACACTGGTCTAATTCAAGCCTGTCTGGATTCTGGTGACATTCAGAGTGGAGCATACATCTTCAACCACATGCACCAGTTCTGCTCCCCAAATTTGATAACTTATAATATAATGCTAAAAGGTTATCTAGATAGTGGGATGTTTGAAGAAGCAAAGCAAATGTTTTTCAAGTTATTGGATAATGGTAACTCTATTAGCAGTAAATTGGACGGTAAGGATAAGGTTTTCCCAGATGTCTACACATTCAACTTGATGTTGGATGCATGTGCTGCTGGAAAGAAATGGGATGATCTCAAGTTTGTGTACTCACATATGCTGAAATATGGATACCACTTCAATGCAAAGCGTCACATTCAGATGGTACTTGACTCCTGCAGGGATGGAAAG : GTGGAATTATTGGAAGCAACATGGAAGGACTTGGCTCGGGCTGATCGGGTTCCACCAGTGCCACTAGTCAAAGAAATGTTCCGCATGCAGCTGGAAAGAGGGAACATTGCTGCTGCCCTGACTTGTGTTACTGATTATCCTCCTGCTGAGTCTCAGGCATTTTCTGCCAAGTTTTGGATGAAGTTTTTTGAGGAAAATTCTGATCAATTATCAGACGGTACGCTTTTCAGATTGCTACAAGAGGTGAGCCGGATTGTTGCCAGAAATGACAGCAAAATACTCAACAATCTAATGGCTTCTTGTAAAGAATTTTTGAGAACTCAATCGACAAAAGTAGATAGAGTTCATAGTGAAACAGCTCTAGTTTGTTAACTTTGCTACAGCCCAAAAGAAGAAAAATCATCAGATACTGATCTGTTCTTGAACAAGTGCTCTATTTGTTAAGAGTTAAGAGTCAAGTTCATAATCAACTATTCTTTATCAGTATAATCATATTTGATTGTTTAGTTCAGCAAGAA</gDNA_template>
            <first_frame> F  I  Q  V  M  F  E  C  G  K  Y  N  L  V  H  D  F  F  K  K  M  Q  K  S  C  V  P  N  A  L  T  Y  K   : V  I  V  S  T  L  W  K  E  G  K  T  D  E  A  L  L  A  V  E  D  M  E  R  R  G  I  V  G  T  A  S  L  Y  Y  D  L  A  R  C  L  C  S  A  G  R  C  E  E  A  L  M  Q  :  M  G  K  I  C  K  V  A  T  K  P  L  V  V  T  Y  T  G  L  I  Q  A  C  L  D  S  G  D  I  Q  S  G  A  Y  I  F  N  H  M  H  Q  F  C  S  P  N  L  I  T  Y  N  I  M  L  K  G  Y  L  D  S  G  M  F  E  E  A  K  Q  M  F  F  K  L  L  D  N  G  N  S  I  S  S  K  L  D  G  K  D  K  V  F  P  D  V  Y  T  F  N  L  M  L  D  A  C  A  A  G  K  K  W  D  D  L  K  F  V  Y  S  H  M  L  K  Y  G  Y  H  F  N  A  K  R  H  I  Q  M  V  L  D  S  C  R  D  G  K  :  V  E  L  L  E  A  T  W  K  D  L  A  R  A  D  R  V  P  P  V  P  L  V  K  E  M  F  R  M  Q  L  E  R  G  N  I  A  A  A  L  T  C  V  T  D  Y  P  P  A  E  S  Q  A  F  S  A  K  F  W  M  K  F  F  E  E  N  S  D  Q  L  S  D  G  T  L  F  R  L  L  Q  E  V  S  R  I  V  A  R  N  D  S  K  I  L  N  N  L  M  A  S  C  K  E  F  L  R  T  Q  S  T  K  V  D  R  V  H  S  E  T  A  L  V  C  *  L  C  Y  S  P  K  E  E  K  S  S  D  T  D  L  F  L  N  K  C  S  I  C  *  E  L  R  V  K  F  I  I  N  Y  S  L  S  V  *  S  Y  L  I  V  *  F  S  K   </first_frame>
            <second_frame>  S  F  R  L  C  S  N  V  A  N  T  I  W  F  M  T  F  S  R  K  C  R  S  H  V  F  P  M  L  *  P  I  K  :  L  L  *  V  L  F  G  R  K  G  K  Q  T  R  P  Y  W  Q  *  K  T  W  S  D  E  E  S  W  A  L  P  V  C  I  M  T  L  L  V  A  F  V  V  Q  G  G  V  K  R  R  *  C  K :   W  E  R  Y  A  K  L  L  R  S  L  *  W  *  L  T  L  V  *  F  K  P  V  W  I  L  V  T  F  R  V  E  H  T  S  S  T  T  C  T  S  S  A  P  Q  I  *  *  L  I  I  *  C  *  K  V  I  *  I  V  G  C  L  K  K  Q  S  K  C  F  S  S  Y  W  I  M  V  T  L  L  A  V  N  W  T  V  R  I  R  F  S  Q  M  S  T  H  S  T  *  C  W  M  H  V  L  L  E  R  N  G  M  I  S  S  L  C  T  H  I  C  *  N  M  D  T  T  S  M  Q  S  V  T  F  R  W  Y  L  T  P  A  G  M  E  R :   W  N  Y  W  K  Q  H  G  R  T  W  L  G  L  I  G  F  H  Q  C  H  *  S  K  K  C  S  A  C  S  W  K  E  G  T  L  L  L  P  *  L  V  L  L  I  I  L  L  L  S  L  R  H  F  L  P  S  F  G  *  S  F  L  R  K  I  L  I  N  Y  Q  T  V  R  F  S  D  C  Y  K  R  *  A  G  L  L  P  E  M  T  A  K  Y  S  T  I  *  W  L  L  V  K  N  F  *  E  L  N  R  Q  K  *  I  E  F  I  V  K  Q  L  *  F  V  N  F  A  T  A  Q  K  K  K  N  H  Q  I  L  I  C  S  *  T  S  A  L  F  V  K  S  *  E  S  S  S  *  S  T  I  L  Y  Q  Y  N  H  I  *  L  F  S  S  A  R  </second_frame>
            <third_frame>   H  S  G  Y  V  R  M  W  Q  I  Q  F  G  S  *  L  F  Q  E  N  A  E  V  M  C  S  Q  C  F  D  L  *  S :   Y  C  E  Y  S  L  E  G  R  E  N  R  R  G  L  T  G  S  R  R  H  G  A  T  R  N  R  G  H  C  Q  F  V  L  *  P  C  S  L  P  L  *  C  R  E  V  *  R  G  A  D  A   : N  G  K  D  M  Q  S  C  Y  E  A  S  S  G  D  L  H  W  S  N  S  S  L  S  G  F  W  *  H  S  E  W  S  I  H  L  Q  P  H  A  P  V  L  L  P  K  F  D  N  L  *  Y  N  A  K  R  L  S  R  *  W  D  V  *  R  S  K  A  N  V  F  Q  V  I  G  *  W  *  L  Y  *  Q  *  I  G  R  *  G  *  G  F  P  R  C  L  H  I  Q  L  D  V  G  C  M  C  C  W  K  E  M  G  *  S  Q  V  C  V  L  T  Y  A  E  I  W  I  P  L  Q  C  K  A  S  H  S  D  G  T  *  L  L  Q  G  W  K   : G  G  I  I  G  S  N  M  E  G  L  G  S  G  *  S  G  S  T  S  A  T  S  Q  R  N  V  P  H  A  A  G  K  R  E  H  C  C  C  P  D  L  C  Y  *  L  S  S  C  *  V  S  G  I  F  C  Q  V  L  D  E  V  F  *  G  K  F  *  S  I  I  R  R  Y  A  F  Q  I  A  T  R  G  E  P  D  C  C  Q  K  *  Q  Q  N  T  Q  Q  S  N  G  F  L  *  R  I  F  E  N  S  I  D  K  S  R  *  S  S  *  *  N  S  S  S  L  L  T  L  L  Q  P  K  R  R  K  I  I  R  Y  *  S  V  L  E  Q  V  L  Y  L  L  R  V  K  S  Q  V  H  N  Q  L  F  F  I  S  I  I  I  F  D  C  L  V  Q  Q  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29860" stop="29761"/>
                    <exon start="29684" stop="29527"/>
                    <exon start="28137" stop="27706"/>
                    <exon start="26222" stop="25851"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1059</number_coding_nucleotides>
                  <number_encoded_amino_acids>353</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIQVMFECGKYNLVHDFFKKMQKSCVPNALTYKVIVSTLWKEGKTDEALLAVEDMERRGIVGTASLYYDLARCLCSAGRCEEALMQMGKICKVATKPLVVTYTGLIQACLDSGDIQSGAYIFNHMHQFCSPNLITYNIMLKGYLDSGMFEEAKQMFFKLLDNGNSISSKLDGKDKVFPDVYTFNLMLDACAAGKKWDDLKFVYSHMLKYGYHFNAKRHIQMVLDSCRDGKVELLEATWKDLARADRVPPVPLVKEMFRMQLERGNIAAALTCVTDYPPAESQAFSAKFWMKFFEENSDQLSDGTLFRLLQEVSRIVARNDSKILNNLMASCKEFLRTQSTKVDRVHSETALVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="35389" PGL_stop="35763"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35389" e_stop="35763"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="35389" e_stop="35763" e_length="375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35389" stop="35763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277738" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGGCTTGAATTCAAGCTCTTCTCTATTAATTACATTATCTAAGCCACAAGAAACTACAATGGAACCCGCATTCCTCTTCTGCTTCTTAACCTTTTTCTTTCCCAGAGAAATTTCTAAAGTGGGTGTCTCGGAAATTGAAAATCCTGATGAAAAACAAGGGCAACGGAGGTAATTTGAACCAAAAACTCCATTGAAATCAGTACAAAGTGAAGCTCCAAATAGAGCTTCTGTCAAGATAATTGCCACCATCTCAACTCAACCACGCATTAAAGGCTGCACTTTATTCTTCTTCTTCTTCCTGGTTTGCTCCGTCGGCCGCCGGCGACCAAAGATAGGATTTTCCCGGCATGTAGTTATGAATGTTCAGTGCTTT</gDNA_template>
            <first_frame> E  G  L  N  S  S  S  S  L  L  I  T  L  S  K  P  Q  E  T  T  M  E  P  A  F  L  F  C  F  L  T  F  F  F  P  R  E  I  S  K  V  G  V  S  E  I  E  N  P  D  E  K  Q  G  Q  R  R  *  F  E  P  K  T  P  L  K  S  V  Q  S  E  A  P  N  R  A  S  V  K  I  I  A  T  I  S  T  Q  P  R  I  K  G  C  T  L  F  F  F  F  F  L  V  C  S  V  G  R  R  R  P  K  I  G  F  S  R  H  V  V  M  N  V  Q  C  F </first_frame>
            <second_frame>  K  A  *  I  Q  A  L  L  Y  *  L  H  Y  L  S  H  K  K  L  Q  W  N  P  H  S  S  S  A  S  *  P  F  S  F  P  E  K  F  L  K  W  V  S  R  K  L  K  I  L  M  K  N  K  G  N  G  G  N  L  N  Q  K  L  H  *  N  Q  Y  K  V  K  L  Q  I  E  L  L  S  R  *  L  P  P  S  Q  L  N  H  A  L  K  A  A  L  Y  S  S  S  S  S  W  F  A  P  S  A  A  G  D  Q  R  *  D  F  P  G  M  *  L  *  M  F  S  A   </second_frame>
            <third_frame>   R  L  E  F  K  L  F  S  I  N  Y  I  I  *  A  T  R  N  Y  N  G  T  R  I  P  L  L  L  L  N  L  F  L  S  Q  R  N  F  *  S  G  C  L  G  N  *  K  S  *  *  K  T  R  A  T  E  V  I  *  T  K  N  S  I  E  I  S  T  K  *  S  S  K  *  S  F  C  Q  D  N  C  H  H  L  N  S  T  T  H  *  R  L  H  F  I  L  L  L  L  P  G  L  L  R  R  P  P  A  T  K  D  R  I  F  P  A  C  S  Y  E  C  S  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35563" stop="35763"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEPKTPLKSVQSEAPNRASVKIIATISTQPRIKGCTLFFFFFLVCSVGRRRPKIGFSRHVVMNVQCF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="41381" PGL_stop="42550"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41381" e_stop="41677"/>
            <exon e_start="41907" e_stop="42038"/>
            <exon e_start="42398" e_stop="42550"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.981" e_score="0.963"/>
          <exon-intron don_prob="0.978" acc_prob="0.967" e_score="0.985"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="41381" e_stop="41677" e_length="297"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.981">
            <gDNA_intron_boundary i_start="41678" i_stop="41906" i_length="229"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="41907" e_stop="42038" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.967">
            <gDNA_intron_boundary i_start="42039" i_stop="42397" i_length="359"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="42398" e_stop="42550" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41381" stop="41677"/>
              <exon start="41907" stop="42038"/>
              <exon start="42398" stop="42550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41381" stop="41676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438308" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAGGCCTTCATCTGTTGCTTTAATTGAAGAAGAAGGAGAAAATTCTGTTCAAGTTCCTGGTCCTCCACCACCACCTCCCCCACCTCCTCCCCCACCACCTCCAAAACTTATGGCGAAAACTACATCAGGCATGGTACAGAGAGCTCCTCAGGTTGTAGAATTTTATCATTCACTGATGAAGAGAGACTCGAGGAAGGATTCATTAAATGGAGGAGTATGTGATGCGTCAAGTGTTTCAGACGTTCGTAGTAGCATGATCGGTGAAATTGAGAACAGATCATCTTATTTGCTGGCT : ATAAGGGCAGATGTTGAAACTCAAGCAGAATTTGTGATTTCCCTGATAGCAGAGGTCAATAATGCAGTTTATTCAGACATCGAGGACGTGGTTGCTTTTGTGAAATGGCTAGATGATGAACTTTGCTTTCTG : GTGGATGAAAGGGCAGTACTAAAGCACTTTGACTGGCCAGAGAGAAAAGCAGATACACTAAGGGAGGCAGCATTTGGATATAGAGATCTCAAGAAGTTGGAGAATGAAGTTTCAACTTACAAGGACGATCCTCGATCGCCATGTGATATTGCA</gDNA_template>
            <first_frame> P  R  P  S  S  V  A  L  I  E  E  E  G  E  N  S  V  Q  V  P  G  P  P  P  P  P  P  P  P  P  P  P  P  P  P  K  L  M  A  K  T  T  S  G  M  V  Q  R  A  P  Q  V  V  E  F  Y  H  S  L  M  K  R  D  S  R  K  D  S  L  N  G  G  V  C  D  A  S  S  V  S  D  V  R  S  S  M  I  G  E  I  E  N  R  S  S  Y  L  L  A  :  I  R  A  D  V  E  T  Q  A  E  F  V  I  S  L  I  A  E  V  N  N  A  V  Y  S  D  I  E  D  V  V  A  F  V  K  W  L  D  D  E  L  C  F  L  :  V  D  E  R  A  V  L  K  H  F  D  W  P  E  R  K  A  D  T  L  R  E  A  A  F  G  Y  R  D  L  K  K  L  E  N  E  V  S  T  Y  K  D  D  P  R  S  P  C  D  I  A </first_frame>
            <second_frame>  Q  G  L  H  L  L  L  *  L  K  K  K  E  K  I  L  F  K  F  L  V  L  H  H  H  L  P  H  L  L  P  H  H  L  Q  N  L  W  R  K  L  H  Q  A  W  Y  R  E  L  L  R  L  *  N  F  I  I  H  *  *  R  E  T  R  G  R  I  H  *  M  E  E  Y  V  M  R  Q  V  F  Q  T  F  V  V  A  *  S  V  K  L  R  T  D  H  L  I  C  W  L :   *  G  Q  M  L  K  L  K  Q  N  L  *  F  P  *  *  Q  R  S  I  M  Q  F  I  Q  T  S  R  T  W  L  L  L  *  N  G  *  M  M  N  F  A  F  W :   W  M  K  G  Q  Y  *  S  T  L  T  G  Q  R  E  K  Q  I  H  *  G  R  Q  H  L  D  I  E  I  S  R  S  W  R  M  K  F  Q  L  T  R  T  I  L  D  R  H  V  I  L   </second_frame>
            <third_frame>   K  A  F  I  C  C  F  N  *  R  R  R  R  K  F  C  S  S  S  W  S  S  T  T  T  S  P  T  S  S  P  T  T  S  K  T  Y  G  E  N  Y  I  R  H  G  T  E  S  S  S  G  C  R  I  L  S  F  T  D  E  E  R  L  E  E  G  F  I  K  W  R  S  M  *  C  V  K  C  F  R  R  S  *  *  H  D  R  *  N  *  E  Q  I  I  L  F  A  G   : Y  K  G  R  C  *  N  S  S  R  I  C  D  F  P  D  S  R  G  Q  *  C  S  L  F  R  H  R  G  R  G  C  F  C  E  M  A  R  *  *  T  L  L  S   : G  G  *  K  G  S  T  K  A  L  *  L  A  R  E  K  S  R  Y  T  K  G  G  S  I  W  I  *  R  S  Q  E  V  G  E  *  S  F  N  L  Q  G  R  S  S  I  A  M  *  Y  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41381" stop="41677"/>
                    <exon start="41907" stop="42038"/>
                    <exon start="42398" stop="42550"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRPSSVALIEEEGENSVQVPGPPPPPPPPPPPPPPKLMAKTTSGMVQRAPQVVEFYHSLMKRDSRKDSLNGGVCDASSVSDVRSSMIGEIENRSSYLLAIRADVETQAEFVISLIAEVNNAVYSDIEDVVAFVKWLDDELCFLVDERAVLKHFDWPERKADTLREAAFGYRDLKKLENEVSTYKDDPRSPCDIA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="42735" PGL_stop="43955"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42735" e_stop="42805"/>
            <exon e_start="43286" e_stop="43429"/>
            <exon e_start="43567" e_stop="43955"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.746" e_score="0.986"/>
          <exon-intron don_prob="0.963" acc_prob="0.999" e_score="0.986"/>
          <exon-only e_score="0.892"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="42735" e_stop="42805" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.746">
            <gDNA_intron_boundary i_start="42806" i_stop="43285" i_length="480"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="43286" e_stop="43429" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43430" i_stop="43566" i_length="137"/>
          </intron>
          <exon e_serial="3" e_score="0.892">
            <gDNA_exon_boundary e_start="43567" e_stop="43955" e_length="389"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42735" stop="42805"/>
              <exon start="43286" stop="43429"/>
              <exon start="43567" stop="43955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416120" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTGATGCGCCACTGCAAAGAGTTCAAAATCCCCACACACTGGATGCTTGATAATGGGATATTAAGCAAG : ATAAAGTTTGGCTCTGTGAAGTTGGCTAAGGTGTACATGAAGAGGGTAGCTGCGGAGCTTCAGTCCAAAGGACCATTAGATAAAGACACTTCCATGGACTACATGCTACTCCAAGGAGTGAGATTTGCTTTCCGGATTCATCAG : TTTGCAGGAGGATTTGATGCAGAAACTATGCAAGCTTTCGAGGAGCTACGAGGCCTAGCACTTTCATTAAACAAGAAATAGAAGATAAAGATTTTTGTGATGAAGTACAATTTTGATAGAGGGCTTACCATCTCAGTAACCATCAATCCAAGTATTGACACATATGTATTAGAGAAAAAATAGAAGGTCTCTGTGGAAACATGGTTGACATCAATGATATTCCTTATCATTGATAATTGGTTCATGTTTTTGTATCCAATTTTTTGCTTTTGGTTTGATGGAAGTAGAAAGATCAGATCTCAAGTTTTCAGTATATTCTATATAAAGAAAGCTTGGTGAAAAAGCTAGAACTTTTATGCAAGTTTTCTATCATATCAATTTACTAATTG</gDNA_template>
            <first_frame> H  *  C  A  T  A  K  S  S  K  S  P  H  T  G  C  L  I  M  G  Y  *  A  R :   *  S  L  A  L  *  S  W  L  R  C  T  *  R  G  *  L  R  S  F  S  P  K  D  H  *  I  K  T  L  P  W  T  T  C  Y  S  K  E  *  D  L  L  S  G  F  I  S :   L  Q  E  D  L  M  Q  K  L  C  K  L  S  R  S  Y  E  A  *  H  F  H  *  T  R  N  R  R  *  R  F  L  *  *  S  T  I  L  I  E  G  L  P  S  Q  *  P  S  I  Q  V  L  T  H  M  Y  *  R  K  N  R  R  S  L  W  K  H  G  *  H  Q  *  Y  S  L  S  L  I  I  G  S  C  F  C  I  Q  F  F  A  F  G  L  M  E  V  E  R  S  D  L  K  F  S  V  Y  S  I  *  R  K  L  G  E  K  A  R  T  F  M  Q  V  F  Y  H  I  N  L  L  I  </first_frame>
            <second_frame>  I  D  A  P  L  Q  R  V  Q  N  P  H  T  L  D  A  *  *  W  D  I  K  Q   : D  K  V  W  L  C  E  V  G  *  G  V  H  E  E  G  S  C  G  A  S  V  Q  R  T  I  R  *  R  H  F  H  G  L  H  A  T  P  R  S  E  I  C  F  P  D  S  S   : V  C  R  R  I  *  C  R  N  Y  A  S  F  R  G  A  T  R  P  S  T  F  I  K  Q  E  I  E  D  K  D  F  C  D  E  V  Q  F  *  *  R  A  Y  H  L  S  N  H  Q  S  K  Y  *  H  I  C  I  R  E  K  I  E  G  L  C  G  N  M  V  D  I  N  D  I  P  Y  H  *  *  L  V  H  V  F  V  S  N  F  L  L  L  V  *  W  K  *  K  D  Q  I  S  S  F  Q  Y  I  L  Y  K  E  S  L  V  K  K  L  E  L  L  C  K  F  S  I  I  S  I  Y  *  L </second_frame>
            <third_frame>   L  M  R  H  C  K  E  F  K  I  P  T  H  W  M  L  D  N  G  I  L  S  K  :  I  K  F  G  S  V  K  L  A  K  V  Y  M  K  R  V  A  A  E  L  Q  S  K  G  P  L  D  K  D  T  S  M  D  Y  M  L  L  Q  G  V  R  F  A  F  R  I  H  Q  :  F  A  G  G  F  D  A  E  T  M  Q  A  F  E  E  L  R  G  L  A  L  S  L  N  K  K  *  K  I  K  I  F  V  M  K  Y  N  F  D  R  G  L  T  I  S  V  T  I  N  P  S  I  D  T  Y  V  L  E  K  K  *  K  V  S  V  E  T  W  L  T  S  M  I  F  L  I  I  D  N  W  F  M  F  L  Y  P  I  F  C  F  W  F  D  G  S  R  K  I  R  S  Q  V  F  S  I  F  Y  I  K  K  A  W  *  K  S  *  N  F  Y  A  S  F  L  S  Y  Q  F  T  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42737" stop="42805"/>
                    <exon start="43286" stop="43429"/>
                    <exon start="43567" stop="43647"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMRHCKEFKIPTHWMLDNGILSKIKFGSVKLAKVYMKRVAAELQSKGPLDKDTSMDYMLLQGVRFAFRIHQFAGGFDAETMQAFEELRGLALSLNKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="65715" PGL_stop="66276"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65715" e_stop="66276"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="65715" e_stop="66276" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65715" stop="66276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322332" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACAGCCATGTTAGACGTATATAGTACCATTAATTCCGTCTCACAAAACTTCTCCCTATCATCGGCGCCGGCGCCGACACTACCACTACCGCCGCCTTCGTCACCACCGACGGTGAGCCGTTACGAGCTACAAAAACGGCGAGACTGGAACACATTCGGACAGTACTTGAGAAACCACAAGCCACCACTGATACTTGCGCGATGCAGCGGAGCGAACATTCTAGAATTCTTAAAATACCTAGATCAATTCGGAAAAACGAAAGTTCACAGCTGTAATTGTCCGTTTTTCGGCGATCCTCATCCGCCGGCGCCGTGCAATTGCCCGTTGAAACAGGCGTGGGGGAGCCTTGACGCGCTAATTGGGAGGCTACGCGCTGCTTTCGAAGAGAACGGAGGACGGACGGAGACGAATCCGTTCGGTGCTCGAGCAGTGAGGTTGTATTTGAAGGAAGTGAGAGACACGCAAGCCAAAGCGAGGGGGATTGCTTATGAGAAGAAGAAAAGAAGAAATATTAAGCAGCGGATTAGTAGTACTATTAATAATTGTGATTAGAGTTTGAG</gDNA_template>
            <first_frame> T  Q  P  C  *  T  Y  I  V  P  L  I  P  S  H  K  T  S  P  Y  H  R  R  R  R  R  H  Y  H  Y  R  R  L  R  H  H  R  R  *  A  V  T  S  Y  K  N  G  E  T  G  T  H  S  D  S  T  *  E  T  T  S  H  H  *  Y  L  R  D  A  A  E  R  T  F  *  N  S  *  N  T  *  I  N  S  E  K  R  K  F  T  A  V  I  V  R  F  S  A  I  L  I  R  R  R  R  A  I  A  R  *  N  R  R  G  G  A  L  T  R  *  L  G  G  Y  A  L  L  S  K  R  T  E  D  G  R  R  R  I  R  S  V  L  E  Q  *  G  C  I  *  R  K  *  E  T  R  K  P  K  R  G  G  L  L  M  R  R  R  K  E  E  I  L  S  S  G  L  V  V  L  L  I  I  V  I  R  V  *  </first_frame>
            <second_frame>  H  S  H  V  R  R  I  *  Y  H  *  F  R  L  T  K  L  L  P  I  I  G  A  G  A  D  T  T  T  T  A  A  F  V  T  T  D  G  E  P  L  R  A  T  K  T  A  R  L  E  H  I  R  T  V  L  E  K  P  Q  A  T  T  D  T  C  A  M  Q  R  S  E  H  S  R  I  L  K  I  P  R  S  I  R  K  N  E  S  S  Q  L  *  L  S  V  F  R  R  S  S  S  A  G  A  V  Q  L  P  V  E  T  G  V  G  E  P  *  R  A  N  W  E  A  T  R  C  F  R  R  E  R  R  T  D  G  D  E  S  V  R  C  S  S  S  E  V  V  F  E  G  S  E  R  H  A  S  Q  S  E  G  D  C  L  *  E  E  E  K  K  K  Y  *  A  A  D  *  *  Y  Y  *  *  L  *  L  E  F  E </second_frame>
            <third_frame>   T  A  M  L  D  V  Y  S  T  I  N  S  V  S  Q  N  F  S  L  S  S  A  P  A  P  T  L  P  L  P  P  P  S  S  P  P  T  V  S  R  Y  E  L  Q  K  R  R  D  W  N  T  F  G  Q  Y  L  R  N  H  K  P  P  L  I  L  A  R  C  S  G  A  N  I  L  E  F  L  K  Y  L  D  Q  F  G  K  T  K  V  H  S  C  N  C  P  F  F  G  D  P  H  P  P  A  P  C  N  C  P  L  K  Q  A  W  G  S  L  D  A  L  I  G  R  L  R  A  A  F  E  E  N  G  G  R  T  E  T  N  P  F  G  A  R  A  V  R  L  Y  L  K  E  V  R  D  T  Q  A  K  A  R  G  I  A  Y  E  K  K  K  R  R  N  I  K  Q  R  I  S  S  T  I  N  N  C  D  *  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0045L06.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65717" stop="66268"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TAMLDVYSTINSVSQNFSLSSAPAPTLPLPPPSSPPTVSRYELQKRRDWNTFGQYLRNHKPPLILARCSGANILEFLKYLDQFGKTKVHSCNCPFFGDPHPPAPCNCPLKQAWGSLDALIGRLRAAFEENGGRTETNPFGARAVRLYLKEVRDTQAKARGIAYEKKKRRNIKQRISSTINNCD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 83 chains have been computed
$ 
$ memory statistics:
$ 111232 bytes spliced alignments in total
$ 44 spliced alignments have been stored
$ 2528 bytes was the average size of a spliced alignment
$ 18544 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1854 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 96 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:20:51
-->
