<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:26:23"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731051" ref_strand="+" ref_description="SGN-E731051 [LA26AA06]">
      <seq>agaagatgcaaacggtaatcaagaaaaagtagatgaattattccggatttcagctggtgctggaaagaaactttatgagaagggtgattttggagcatcaaaaatttcaaacatagatacttatatattgaagaaggttggcttgtttccagatgtactggagcgcagaattaagcaacattttgacaatggagacaatatttcagctttggtgacgggagaattttatacaaagaaggagcattttccaggatttgcgcgaccttttgtctttaatgctgaagttttgctgaaggttgggcgcaatatagaagctaaagatgctgctaggggggctttaaaatcaccatggtggactttgggttgcgaataccatgaagttgctaatatggctgaatgggaagatgaacaaattgagtatatcaaagagaaagtaactgaggagggtagggaagccgatctaaagaaagggaagcaacctgctcaggttgcattggatgaagctgctttcttgttggatctagcttccattgacggttcatgggacgattgtgcagaaaggattgctgaatgctacaaggaggcgggcctgcatgaagttgcaaactttgtggtttacagagactgaaataccagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="4781" stop="3059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4481" g_stop="4346" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4345" i_stop="4263" i_length="83">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4262" g_stop="4200" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="199" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4199" i_stop="4122" i_length="78">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4121" g_stop="4027" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="294" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4026" i_stop="3926" i_length="101">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3925" g_stop="3844" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="376" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3843" i_stop="3758" i_length="86">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3757" g_stop="3647" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="487" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3646" i_stop="3511" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3510" g_stop="3359" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="639" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E731051" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4481" e_stop="4346"/>
          <exon e_start="4262" e_stop="4200"/>
          <exon e_start="4121" e_stop="4027"/>
          <exon e_start="3925" e_stop="3844"/>
          <exon e_start="3757" e_stop="3647"/>
          <exon e_start="3510" e_stop="3359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATGCAAACGGTAATCAAGAAAAAGTAGATGAATTATTCCGGATTTCAGCTGGTGCTGGAAAGAAACTTTATGAGAAGGGTGATTTTGGAGCATCAAAAATTTCAAACATAGATACTTATATATTGAAGAAGGTAGAAGGAAGGATGTATACGGCAATATCTTGATGATGGTCATTGTGACTCAAGCTAATTGCACTTATTGATATTTTCTCTAGGTTGGCTTGTTTCCAGATGTACTGGAGCGCAGAATTAAGCAACATTTTGACAATGGAGACAATGTAAGAAAGTTCTTTTTTATCTAGTAAGCAATGCTCAATCCATTGCATTTGGGTGATATATATACGTGCTGTTGGAAGATTTCAGCTTTGGTGACGGGAGAATTTTATACAAAGAAGGAGCATTTTCCAGGATTTGCGCGACCTTTTGTCTTTAATGCTGAAGTTTTGCTGAAGTCTGTAATATCTCATAGTTTTTCTTCCTCAATAAATCTGTGTATTTATAAAACAAGTTATTCTACAACATATTTACTCATATAGTTCTCTTCTTCTCTAGGGTTGGGCGCAATATAGAAGCTAAAGATGCTGCTAGGGGGGCTTTAAAATCACCATGGTGGACTTTGGGTTGCGAATACCATGTACGCAATTCCTTGATCCAATCAATTTGTTTTTGCCTTTTGCAGCATGCTGATGCTAGGTCTATCTGGTTCTCTCTTTATTGCAGGAAGTTGCTAATATGGCTGAATGGGAAGATGAACAAATTGAGTATATCAAAGAGAAAGTAACTGAGGAGGGTAGGGAAGCCGATCTAAAGAAAGGGAAGCAACCTGCTCAGGTATCACTAAACTCTCTATTAAACATGAATTTATATGTGTTTGCATAAGAAAATGATTTCCCAGATTTCAGCACCTACTCCTTGACAAAAAGAAGATAAACCTTCGTTCCTTTTTCTTCCTATACCTATTTTGCAGGTTGCATTGGATGAAGCTGCTTTCTTGTTGGATCTAGCTTCCATTGACGGTTCATGGGACGATTGTGCAGAAAGGATTGCTGAATGCTACAAGGAGGCGGGCCTGCATGAAGTTGCAAACTTTGTGGTTTACAGAGACTGAAATACCAGCAA</genome_strand>
        <mrna_strand>AGAAGATGCAAACGGTAATCAAGAAAAAGTAGATGAATTATTCCGGATTTCAGCTGGTGCTGGAAAGAAACTTTATGAGAAGGGTGATTTTGGAGCATCAAAAATTTCAAACATAGATACTTATATATTGAAGAAG...................................................................................GTTGGCTTGTTTCCAGATGTACTGGAGCGCAGAATTAAGCAACATTTTGACAATGGAGACAAT..............................................................................ATTTCAGCTTTGGTGACGGGAGAATTTTATACAAAGAAGGAGCATTTTCCAGGATTTGCGCGACCTTTTGTCTTTAATGCTGAAGTTTTGCTGAA.....................................................................................................GGTTGGGCGCAATATAGAAGCTAAAGATGCTGCTAGGGGGGCTTTAAAATCACCATGGTGGACTTTGGGTTGCGAATACCAT......................................................................................GAAGTTGCTAATATGGCTGAATGGGAAGATGAACAAATTGAGTATATCAAAGAGAAAGTAACTGAGGAGGGTAGGGAAGCCGATCTAAAGAAAGGGAAGCAACCTGCTCAG........................................................................................................................................GTTGCATTGGATGAAGCTGCTTTCTTGTTGGATCTAGCTTCCATTGACGGTTCATGGGACGATTGTGCAGAAAGGATTGCTGAATGCTACAAGGAGGCGGGCCTGCATGAAGTTGCAAACTTTGTGGTTTACAGAGACTGAAATACCAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736859" ref_strand="+" ref_description="SGN-E736859 [LC07CD02]">
      <seq>cacacaagtaatatcaggaaagataatgaagttgggtggtggagtgggttttggatgtccacgcgccgtcgcatttcccggcattttattcagccgctgccgaccaacattccgatgctattcctcttcttcttctccagaccatgtatcatttatcaaagatgtagctgcaactcaagcaccggaacatttgaatgaacttctcaaaatccttcaggtgagaggtgaagaaataatttctcctggtgccaagcaagggctggttcctctagtgattcctctttccagaaggagttcagattctgtaactgcactgttacgatggccaactgccccatctgggatggagatgccgttggtagaagtgcgcaagtatggtgtgtggctattatctaagaatgtagatcagtacattcacagggttttggcggaagaagatgcaaacggtaatcaagaaaaagtagatgaattattccggatttcagctggtgctggaaagaaactttatgagaagggtgattttggagcatcaaaaatttcaaacatagatacttatatattgaagaaggttggcttgtttccagatgtactggagcgcagaattaagcaacattttgacaatggagacaatatttcagctttggtgacgggagaattttatacaaagaaggagcattttccaggatttgcgcgaccttttgtctttaatgctgaagttttgctgaaggttgggcgcaatatagaagctaaagatgctgctaggggggctttaaaatcaccatggtggactttgggttgcgaataccatgaagttgctaatatggctgaatgggaagatgaacaaattgagtatatcaaagagaaagtaactgaggaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="6488" stop="3387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6188" g_stop="6049" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6048" i_stop="5741" i_length="308">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5740" g_stop="5657" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="224" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5656" i_stop="5061" i_length="596">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.632" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5060" g_stop="4986" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="299" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4985" i_stop="4895" i_length="91">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4894" g_stop="4852" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="342" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4851" i_stop="4703" i_length="149">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4702" g_stop="4645" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="400" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4644" i_stop="4514" i_length="131">
            <donor d_prob="0.737" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4513" g_stop="4346" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="568" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4345" i_stop="4263" i_length="83">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4262" g_stop="4200" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="631" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4199" i_stop="4122" i_length="78">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4121" g_stop="4027" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="726" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4026" i_stop="3926" i_length="101">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="3925" g_stop="3844" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="808" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="3843" i_stop="3758" i_length="86">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="3757" g_stop="3687" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="809" r_stop="879" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E736859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6188" e_stop="6049"/>
          <exon e_start="5740" e_stop="5657"/>
          <exon e_start="5060" e_stop="4986"/>
          <exon e_start="4894" e_stop="4852"/>
          <exon e_start="4702" e_stop="4645"/>
          <exon e_start="4513" e_stop="4346"/>
          <exon e_start="4262" e_stop="4200"/>
          <exon e_start="4121" e_stop="4027"/>
          <exon e_start="3925" e_stop="3844"/>
          <exon e_start="3757" e_stop="3687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACAAGTAATATCAGGAAAGATAATGAAGTTGGGTGGTGGAGTGGGTTTTGGATGTCCACGCGCCGTCGCATTTCCCGGCATTTTATTCAGCCGCTGCCGACCAACATTCCGATGCTATTCCTCTTCTTCTTCTCCAGGTAAAGAAAACTGCAAACCTACAAATACTTCTTCCGTGTTTATTTGTACATGTATTGTCTAGCCGAATGCCGATGTCTACTAGTTTTGAAATGAGGTCTAGTTGATTGATATAATTGAAATAAAATGTGGATTAACCAATCGGAGATCGTTCACTGCCGTGCCATGTTAGTATGAATTGCATCACTGCCGTGAGGTTTTTTGTCTAGTCTAATTTGATACTAGTTGGTTGCTACTGCACCAATTCACATGTGTTTTGAATGCACAGATTCGTATTTGAAATGATGGAAGTGGTATTTTTTCAATGCAGACCATGTATCATTTATCAAAGATGTAGCTGCAACTCAAGCACCGGAACATTTGAATGAACTTCTCAAAATCCTTCAGGTGAGAGGTGAGGCAATCTAATTCCATTATTTAAAATTTTGATTAATTTGAGTATGCTTCTATTAGAAAATAAATATTAAATGGAGAAGCCTGCTATAATCCTTATATTAGCTCTCGACAGTTATACTGAAACCACTCTTTGGAAACTTACCTTTTTTATGTATATATCACGATATAACTGGTCATAGGTGCTTCTAGTTTTAGTTAGTGTTAGAGTTACCTTTTTCATGTATATATCACAATAACTGGTCAGGAGTGCTTCCAGTTCTAGTTAGAGTTTTAAAAAAAGTACTTTTCCTTACCTGTAGGTCCTCTTCAATGTTTGTTTCACAGTTATAGTTAGGAGTAACTTATCGTTACTGAAACTTGAGGTGTCAGGGGGGGGTCCTGTTAGGGTAATCTTTTGTTTCTCTTGGTTACTTGATATTAAGGAAGTGTCATAGGATGACCTGGTACGCCCGACAAAGACTTGGGTAATATCCTTTCATAGGCTTACTTAGATGAGATTTTTGGCTTAGGTTGTTATTGATAGTTTGATTGTCAACATAACTGATGTCTGATGGTCTCTATGAACCTCATGCACTGCTCAACACCTTATGATAGGTGAAGAAATAATTTCTCCTGGTGCCAAGCAAGGGCTGGTTCCTCTAGTGATTCCTCTTTCCAGAAGGAGTTCAGGTATGGTGGAGAAATTGGATCTGATATCAAGCTTTTCTAAAGTTGAAAGCGTGCTTCTATGTTCATTTTTTTTCCTTCTCTTCTTTTGTAGATTCTGTAACTGCACTGTTACGATGGCCAACTGCCCCATCTGGGTAATATTATTCATCAAAATGCTGAGTTTTGTGGATATCTCTGTTCTACTTTTTGGGTGCTTATCTCGGTTTATTCTCCGGTCTCCTAATTGCTCTCAGGAAAAGGGGGAAAATATTTTGTATCTGATTTACATCTTCATTGTTTACAGGATGGAGATGCCGTTGGTAGAAGTGCGCAAGTATGGTGTGTGGCTATTATCTAAGAATGTAAGCTACTATGAACTTGCTCTACTACTTGGGATCTGGATGATGTTTGATAGGGTTAATTGCTTCACTCTTGCATTCTGCTTTGGTAGCATGCACAAATTTATCCCACCTTTCCTTTTACCATGCTATAGGTAGATCAGTACATTCACAGGGTTTTGGCGGAAGAAGATGCAAACGGTAATCAAGAAAAAGTAGATGAATTATTCCGGATTTCAGCTGGTGCTGGAAAGAAACTTTATGAGAAGGGTGATTTTGGAGCATCAAAAATTTCAAACATAGATACTTATATATTGAAGAAGGTAGAAGGAAGGATGTATACGGCAATATCTTGATGATGGTCATTGTGACTCAAGCTAATTGCACTTATTGATATTTTCTCTAGGTTGGCTTGTTTCCAGATGTACTGGAGCGCAGAATTAAGCAACATTTTGACAATGGAGACAATGTAAGAAAGTTCTTTTTTATCTAGTAAGCAATGCTCAATCCATTGCATTTGGGTGATATATATACGTGCTGTTGGAAGATTTCAGCTTTGGTGACGGGAGAATTTTATACAAAGAAGGAGCATTTTCCAGGATTTGCGCGACCTTTTGTCTTTAATGCTGAAGTTTTGCTGAAGTCTGTAATATCTCATAGTTTTTCTTCCTCAATAAATCTGTGTATTTATAAAACAAGTTATTCTACAACATATTTACTCATATAGTTCTCTTCTTCTCTAGGGTTGGGCGCAATATAGAAGCTAAAGATGCTGCTAGGGGGGCTTTAAAATCACCATGGTGGACTTTGGGTTGCGAATACCATGTACGCAATTCCTTGATCCAATCAATTTGTTTTTGCCTTTTGCAGCATGCTGATGCTAGGTCTATCTGGTTCTCTCTTTATTGCAGGAAGTTGCTAATATGGCTGAATGGGAAGATGAACAAATTGAGTATATCAAAGAGAAAGTAACTGAGGAGGG</genome_strand>
        <mrna_strand>CACACAAGTAATATCAGGAAAGATAATGAAGTTGGGTGGTGGAGTGGGTTTTGGATGTCCACGCGCCGTCGCATTTCCCGGCATTTTATTCAGCCGCTGCCGACCAACATTCCGATGCTATTCCTCTTCTTCTTCTCCAG....................................................................................................................................................................................................................................................................................................................ACCATGTATCATTTATCAAAGATGTAGCTGCAACTCAAGCACCGGAACATTTGAATGAACTTCTCAAAATCCTTCAGGTGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAATAATTTCTCCTGGTGCCAAGCAAGGGCTGGTTCCTCTAGTGATTCCTCTTTCCAGAAGGAGTTCAG...........................................................................................ATTCTGTAACTGCACTGTTACGATGGCCAACTGCCCCATCTGG.....................................................................................................................................................GATGGAGATGCCGTTGGTAGAAGTGCGCAAGTATGGTGTGTGGCTATTATCTAAGAAT...................................................................................................................................GTAGATCAGTACATTCACAGGGTTTTGGCGGAAGAAGATGCAAACGGTAATCAAGAAAAAGTAGATGAATTATTCCGGATTTCAGCTGGTGCTGGAAAGAAACTTTATGAGAAGGGTGATTTTGGAGCATCAAAAATTTCAAACATAGATACTTATATATTGAAGAAG...................................................................................GTTGGCTTGTTTCCAGATGTACTGGAGCGCAGAATTAAGCAACATTTTGACAATGGAGACAAT..............................................................................ATTTCAGCTTTGGTGACGGGAGAATTTTATACAAAGAAGGAGCATTTTCCAGGATTTGCGCGACCTTTTGTCTTTAATGCTGAAGTTTTGCTGAA.....................................................................................................GGTTGGGCGCAATATAGAAGCTAAAGATGCTGCTAGGGGGGCTTTAAAATCACCATGGTGGACTTTGGGTTGCGAATACCAT......................................................................................GAAGTTGCTAATATGGCTGAATGGGAAGATGAACAAATTGAGTATATCAAAGAGAAAGTAACTGAGGAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235309" ref_strand="+" ref_description="SGN-E235309 [cLED-11-G4]">
      <seq>gagattccaatcttatcgttaataaaccgccggttctggaccgttggtttcctgaatttgttgctagtccaattcatgtacctttatctaatgaacatgtccatgatgaatttgatctgcctttgttagaagaaagagttttccattttagcaaggagaatatagctcaactcaaagccaaagccaattctgaatatggaaacgaccaaaagatttgtatctcttcattacaagccgttttggctcatatctggcaatctgttatccgttgccgttgtggtacgaacgctaacgaaaaatttagtttcaaattacttataggcgcaaggacaaggctccagccgcatttacctgaaggctattttggaaatgcggtacattttgtaaacgtgacaaccaccgctagggagatgttggagcatgattcatgttgggctgctatgcaaataaataaggtggtatctacgcaaactcatgaagagggtatgaatttttatcaaaattgggtgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="14997" stop="13790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14697" g_stop="14269" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14268" i_stop="14176" i_length="93">
            <donor d_prob="0.797" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14175" g_stop="14090" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="515" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E235309" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14697" e_stop="14269"/>
          <exon e_start="14175" e_stop="14090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTCCAATCTTATCGTTAATAAACCGCCGGTTCTGGACCGTTGGTTTCCTGAATTTGTTGCTAGTCCAATTCATGTACCTTTATCTAATGAACATGTCCATGATGAATTTGATCTGCCTTTGTTAGAAGAAAGAGTTTTCCATTTTAGCAAGGAGAATATAGCTCAACTCAAAGCCAAAGCCAATTCTGAATATGGAAACGACCAAAAGATTTGTATCTCTTCATTACAAGCCGTTTTGGCTCATATCTGGCAATCTGTTATCCGTTGCCGTTGTGGTACGAACGCTAACGAAAAATTTAGTTTCAAATTACTTATAGGCGCAAGGACAAGGCTCCAGCCGCATTTACCTGAAGGCTATTTTGGAAATGCGGTACATTTTGTAAACGTGACAACCACCGCTAGGGAGATGTTGGAGCATGATTCAGGTTAGTGAGGAATTAAAAGGGCTTAAACAAGTTAAAATTCAGTAAGGAATGAATTAAACTATTTTTTAAGATATACCTTTAAAAAAACTGCAGGTTGGGCTGCTATGCAAATAAATAAGGTGGTATCTACGCAAACTCATGAAGAGGTTATGAATTTTTATCAAAATTGGGTGAAAAAT</genome_strand>
        <mrna_strand>GAGATTCCAATCTTATCGTTAATAAACCGCCGGTTCTGGACCGTTGGTTTCCTGAATTTGTTGCTAGTCCAATTCATGTACCTTTATCTAATGAACATGTCCATGATGAATTTGATCTGCCTTTGTTAGAAGAAAGAGTTTTCCATTTTAGCAAGGAGAATATAGCTCAACTCAAAGCCAAAGCCAATTCTGAATATGGAAACGACCAAAAGATTTGTATCTCTTCATTACAAGCCGTTTTGGCTCATATCTGGCAATCTGTTATCCGTTGCCGTTGTGGTACGAACGCTAACGAAAAATTTAGTTTCAAATTACTTATAGGCGCAAGGACAAGGCTCCAGCCGCATTTACCTGAAGGCTATTTTGGAAATGCGGTACATTTTGTAAACGTGACAACCACCGCTAGGGAGATGTTGGAGCATGATTCAT.............................................................................................GTTGGGCTGCTATGCAAATAAATAAGGTGGTATCTACGCAAACTCATGAAGAGGGTATGAATTTTTATCAAAATTGGGTGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227096" ref_strand="+" ref_description="SGN-E227096 [cLED-1-L7]">
      <seq>agattccaatcttatcgttaataaaccgccggttctggaccgttggtttcctgaatttgttgctagtccaattcatgtacctttatctaatgaacatgtccatgatgaatttgatctgcctttgttagaagaaagagttttccattttagcaaggagaatatagctcaactcaaagccaaagccaattctgaatatggaaacgaccaaaagatttgtatctcttcattacaagccgttttggctcatatctggcaatctgttatccgttgccgntgtggtacgaacgctaacgaaaaatttagtttcaaattacttataggcgcaaggacaaggctccagccgcatttacctgaaggctattttggaaatgcggtacattttgtaaacgtgacaaccaccgctagggagatgttggagcatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="14996" stop="13972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14696" g_stop="14272" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E227096" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14696" e_stop="14272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTCCAATCTTATCGTTAATAAACCGCCGGTTCTGGACCGTTGGTTTCCTGAATTTGTTGCTAGTCCAATTCATGTACCTTTATCTAATGAACATGTCCATGATGAATTTGATCTGCCTTTGTTAGAAGAAAGAGTTTTCCATTTTAGCAAGGAGAATATAGCTCAACTCAAAGCCAAAGCCAATTCTGAATATGGAAACGACCAAAAGATTTGTATCTCTTCATTACAAGCCGTTTTGGCTCATATCTGGCAATCTGTTATCCGTTGCCGTTGTGGTACGAACGCTAACGAAAAATTTAGTTTCAAATTACTTATAGGCGCAAGGACAAGGCTCCAGCCGCATTTACCTGAAGGCTATTTTGGAAATGCGGTACATTTTGTAAACGTGACAACCACCGCTAGGGAGATGTTGGAGCATGATT</genome_strand>
        <mrna_strand>AGATTCCAATCTTATCGTTAATAAACCGCCGGTTCTGGACCGTTGGTTTCCTGAATTTGTTGCTAGTCCAATTCATGTACCTTTATCTAATGAACATGTCCATGATGAATTTGATCTGCCTTTGTTAGAAGAAAGAGTTTTCCATTTTAGCAAGGAGAATATAGCTCAACTCAAAGCCAAAGCCAATTCTGAATATGGAAACGACCAAAAGATTTGTATCTCTTCATTACAAGCCGTTTTGGCTCATATCTGGCAATCTGTTATCCGTTGCCGNTGTGGTACGAACGCTAACGAAAAATTTAGTTTCAAATTACTTATAGGCGCAAGGACAAGGCTCCAGCCGCATTTACCTGAAGGCTATTTTGGAAATGCGGTACATTTTGTAAACGTGACAACCACCGCTAGGGAGATGTTGGAGCATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332460" ref_strand="+" ref_description="SGN-E332460 [cTOD-17-L19]">
      <seq>tcaactcctcacagtagatcctatccaaaaaggattatttttccgtaaaccaaatcctgagcaacctaaagagttagcaaaatcatcatcagaaattattaatcgcctaaaagtttcactctctgatactctaaatcattttcctcttctcgcgggtcgacttattgctagtaaaaatagtgatggcacctcatctttctttgtagattgcaacaatgaaggagctgagttcaattacgtcactgcacctgatttaactgtggatgatatcttggaacaaacttacgtgccaaagattgtcaagtatttcttcccactcaatggagtatgcaactatgaaggtgtttcaaaaccattgttggctgtgcaagtcacagagctagtggatggattcttcattggttgcactatcaatcattgtgtagcggatgggacttcattttggcatttcttcaattgttggtctgaaatagcgcgcagtggagattccaatcttatcgttaataaaccgccggttctggaccgttggtttcctgaatttgttgctagtccaattcatgtacctttatctaatgaacatgtccatgatgaatttgatctgcctttgttagaagaaagagttttccattttagcaaggagaatatagctcaactcaaagccaaagccaattctgaatatggaaacgaccaaaagatttgtatctcttcattancagccgttttggctcatatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="15609" stop="14145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15309" g_stop="14969" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14968" i_stop="14839" i_length="130">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14838" g_stop="14445" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="735" r_length="394" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E332460" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15309" e_stop="14969"/>
          <exon e_start="14838" e_stop="14445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAGGTGAAATTAAATATAATTATGCCAACAACCCTAAAAGTTTTCGTTGTTACATAGATACTACACTTTTTAAGTTTCAACAGGAGCATGCATGACTCTTTTTTAAATTTTAAATTATATTGTGTCTCACCAGGTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCTTCAATTGTTGGTCTGAAATAGCGCGCAGTGGAGATTCCAATCTTATCGTTAATAAACCGCCGGTTCTGGACCGTTGGTTTCCTGAATTTGTTGCTAGTCCAATTCATGTACCTTTATCTAATGAACATGTCCATGATGAATTTGATCTGCCTTTGTTAGAAGAAAGAGTTTTCCATTTTAGCAAGGAGAATATAGCTCAACTCAAAGCCAAAGCCAATTCTGAATATGGAAACGACCAAAAGATTTGTATCTCTTCATTACAAGCCGTTTTGGCTCATATCTG</genome_strand>
        <mrna_strand>TCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAG..................................................................................................................................GTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCTTCAATTGTTGGTCTGAAATAGCGCGCAGTGGAGATTCCAATCTTATCGTTAATAAACCGCCGGTTCTGGACCGTTGGTTTCCTGAATTTGTTGCTAGTCCAATTCATGTACCTTTATCTAATGAACATGTCCATGATGAATTTGATCTGCCTTTGTTAGAAGAAAGAGTTTTCCATTTTAGCAAGGAGAATATAGCTCAACTCAAAGCCAAAGCCAATTCTGAATATGGAAACGACCAAAAGATTTGTATCTCTTCATTANCAGCCGTTTTGGCTCATATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241725" ref_strand="+" ref_description="SGN-E241725 [cLED-36-P1]">
      <seq>tattgctagtaaaaatagtgatggcacctcatctttctttgtagattgcaacaatgaaggagctgagttcaattacgtcactgcacctgatttaactgtggatgatatcttggaacaaacttacgtgccaaagattgtcaagtatttcttcccactcaatggagtatgcaactatgaaggtgtttcaaaaccattgttggctgtgcaagtcacagagctagtggatggattcttcattggttgcactatcaatcattgtgtagcggatgggacttcattttggcatttcttcaattgttggtctgaaatagcgcgcagtggagattccaatcttatcgtcaataaaccgccggttctggaccgttggtttcctgaattcgttgctagtccaattcatgtacctttatctaatgaacatgtccatgatgaatttgatctgcctttgttagaagaaagagttttccattttagcaaggagaatatagctcaactcaaagccaaagccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="15447" stop="14210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15147" g_stop="14969" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14968" i_stop="14839" i_length="130">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14838" g_stop="14510" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="508" r_length="329" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E241725" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15147" e_stop="14969"/>
          <exon e_start="14838" e_stop="14510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAGGTGAAATTAAATATAATTATGCCAACAACCCTAAAAGTTTTCGTTGTTACATAGATACTACACTTTTTAAGTTTCAACAGGAGCATGCATGACTCTTTTTTAAATTTTAAATTATATTGTGTCTCACCAGGTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCTTCAATTGTTGGTCTGAAATAGCGCGCAGTGGAGATTCCAATCTTATCGTTAATAAACCGCCGGTTCTGGACCGTTGGTTTCCTGAATTTGTTGCTAGTCCAATTCATGTACCTTTATCTAATGAACATGTCCATGATGAATTTGATCTGCCTTTGTTAGAAGAAAGAGTTTTCCATTTTAGCAAGGAGAATATAGCTCAACTCAAAGCCAAAGCCAAT</genome_strand>
        <mrna_strand>TATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAG..................................................................................................................................GTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCTTCAATTGTTGGTCTGAAATAGCGCGCAGTGGAGATTCCAATCTTATCGTCAATAAACCGCCGGTTCTGGACCGTTGGTTTCCTGAATTCGTTGCTAGTCCAATTCATGTACCTTTATCTAATGAACATGTCCATGATGAATTTGATCTGCCTTTGTTAGAAGAAAGAGTTTTCCATTTTAGCAAGGAGAATATAGCTCAACTCAAAGCCAAAGCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333971" ref_strand="+" ref_description="SGN-E333971 [cTOD-24-A5]">
      <seq>tcagtttagcttttgcaacaaatattcaaagatgacaaaacttcgagtagtatcagtatgtgtaattaggtcccaaaaattctcttcaagcaaaaaaatccagttaactccatgggatcttcaactcctcacagtagatcctatccaaaaaggattatttttccgtaaaccaaatcctgagcaacctaaagagttagcaaaatcatcatcagaaattattaatcgcctaaaagtttcactctctgatactctaaatcattttcctcttctcgcgggtcgacttattgctagtaaaaatagtgatggcacctcatctttctttgtagattgcaacaatgaaggagctgagttcaattacgtcactgcacctgatttaactgtggatgatatcttggaacaaacttacgtgccaaagattgtcaagtatttcttcccactcaatggagtatgcaactatgaaggtgtttcaaaaccattgttggctgtgcaagtcacagagctagtggatggattcttcattggttgcactatcaatcattgtgtagcggatgggacttcattttggcatttcttcaattgttggtctgaaatagcgcgcagtggagattccaatcttatcgttaataaaccgccggttctgggacgttgggtttctgaatttgttgctagtccaattcatgtacctttatctaatgacatgtccatgatgaaattgatctgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="15729" stop="14276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15429" g_stop="14969" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14968" i_stop="14839" i_length="130">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14838" g_stop="14576" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="723" r_length="262" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E333971" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15429" e_stop="14969"/>
          <exon e_start="14838" e_stop="14576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAGGTGAAATTAAATATAATTATGCCAACAACCCTAAAAGTTTTCGTTGTTACATAGATACTACACTTTTTAAGTTTCAACAGGAGCATGCATGACTCTTTTTTAAATTTTAAATTATATTGTGTCTCACCAGGTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCTTCAATTGTTGGTCTGAAATAGCGCGCAGTGGAGATTCCAATCTTATCGTTAATAAACCGCCGGTTCTGGACCGTTGGTTTCCTGAATTTGTTGCTAGTCCAATTCATGTACCTTTATCTAATGAACATGTCCATGATGAATTTGATCTGCCT</genome_strand>
        <mrna_strand>TCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAG..................................................................................................................................GTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCTTCAATTGTTGGTCTGAAATAGCGCGCAGTGGAGATTCCAATCTTATCGTTAATAAACCGCCGGTTCTGGGACGTTGGGTTTCTGAATTTGTTGCTAGTCCAATTCATGTACCTTTATCTAATG-ACATGTCCATGATGAAATTGATCTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332699" ref_strand="+" ref_description="SGN-E332699 [cTOD-18-G15]">
      <seq>ttttatattatatatatataggtatgtgagccatgactcattaagtataagtgaatttctcctcagtttagcttttgcaacaaatattcaaagatgacaaaacttcgagtagtatcagtatgtgtaattaggtcccaaaaattctcttcaagcaaaaaaatccagttaactccatgggatcttcaactcctcacagtagatcctatccaaaaaggattatttttccgtaaaccaaatcctgagcaacctaaagagttagcaaaatcatcatcagaaattattaatcgcctaaaagtttcactctctgatactctaaatcattttcctcttctcgcgggtcgacttattgctagtaaaaatagtgatggcacctcatctttctttgtagattgcaacaatgaaggagctgagttcaattacgtcactgcacctgatttaactgtggatgatatcttggaacaaacttacgtgccaaagattgtcaagtatttcttcccactcaatggagtatgcaactatgaaggtgtttcaaaaccattgttggctgtgcaagtcacagagctagtggatggattcttcattggttgcactatcaatcattgtgtagcggatgggacttcattttggcatttcttcaattgttggtctgaaatagcgcgcagtggagattccaatcttatcgttaataaaccgccggttctgggaccgttggtttcctgaatttgttgctagtccaattcatgtacctttatctaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="15791" stop="14304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15491" g_stop="14969" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14968" i_stop="14839" i_length="130">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14838" g_stop="14604" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="759" r_length="236" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E332699" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15491" e_stop="14969"/>
          <exon e_start="14838" e_stop="14604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAGGTGAAATTAAATATAATTATGCCAACAACCCTAAAAGTTTTCGTTGTTACATAGATACTACACTTTTTAAGTTTCAACAGGAGCATGCATGACTCTTTTTTAAATTTTAAATTATATTGTGTCTCACCAGGTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCTTCAATTGTTGGTCTGAAATAGCGCGCAGTGGAGATTCCAATCTTATCGTTAATAAACCGCCGGTTCT-GGACCGTTGGTTTCCTGAATTTGTTGCTAGTCCAATTCATGTACCTTTATCTAATGA</genome_strand>
        <mrna_strand>TTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAG..................................................................................................................................GTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCTTCAATTGTTGGTCTGAAATAGCGCGCAGTGGAGATTCCAATCTTATCGTTAATAAACCGCCGGTTCTGGGACCGTTGGTTTCCTGAATTTGTTGCTAGTCCAATTCATGTACCTTTATCTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334579" ref_strand="+" ref_description="SGN-E334579 [cTOD-23-I15]">
      <seq>ctcagtttagcttctgcatcaaattttatattatatatatataggtatgtgagccatgactcattaagtataagtgaatttctcctcagtttagcttttgcaacaaatattcaaagatgacaaaacttcgagtagtatcagtatgtgtaattaggtcccaaaaattctcttcaagcaaaaaatccagttaactccatgggatcttcaactcctcacagtagatcctatccaaaaaggattatttttccgtaaaccaaatcctgagcaacctaaagagttagcaaaatcatcatcagaaattattaatcgcctaaaagtttcactctctgatactctaaatcattttcctcttctcgcgggtcgacttattgctagtaaaaatagtgatggcacctcatctttctttgtagattgcaacaatgaaggagctgagttcaattacgtcactgcacctgatttaactgtggatgatatcttggaacaaacttacgtgccaaagattgtcaagtatttcttcccactcaatggagtatgcaactatgaaggtgtttcaaaaccattgttggctgtgcaagtcacagagctagtggatggattcttcattggttgcactatcaatcattgtgtagcggatgggacttcattttggcatttcttcaattgttggtctgaaatagcgcgcagtggagattccaatcttatcgttaataaaccgccggttctngaccgttggtttcctgaaattgttgctagtccaattcatgtacctttatctaatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="15814" stop="14300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15514" g_stop="14969" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14968" i_stop="14839" i_length="130">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14838" g_stop="14605" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="779" r_length="234" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E334579" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15514" e_stop="14969"/>
          <exon e_start="14838" e_stop="14605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAGGTGAAATTAAATATAATTATGCCAACAACCCTAAAAGTTTTCGTTGTTACATAGATACTACACTTTTTAAGTTTCAACAGGAGCATGCATGACTCTTTTTTAAATTTTAAATTATATTGTGTCTCACCAGGTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCTTCAATTGTTGGTCTGAAATAGCGCGCAGTGGAGATTCCAATCTTATCGTTAATAAACCGCCGGTTCTGGACCGTTGGTTTCCTGAATTTGTTGCTAGTCCAATTCATGTACCTTTATCTAATG</genome_strand>
        <mrna_strand>CTCAGTTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGC-AAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAG..................................................................................................................................GTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCTTCAATTGTTGGTCTGAAATAGCGCGCAGTGGAGATTCCAATCTTATCGTTAATAAACCGCCGGTTCTNGACCGTTGGTTTCCTGAAATTGTTGCTAGTCCAATTCATGTACCTTTATCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333241" ref_strand="+" ref_description="SGN-E333241 [cTOD-20-L21]">
      <seq>tttagcttctgcatcaaattttatattatatatatataggtatgtgagccatgactcattaagtataagtgaatttctcctcagtttagcttttgcaacaaatattcaaagatgacaaaacttcgagtagtatcagtatgtgtaattaggtcccaaaaattctcttcaagcaaaaaaatccagttaactccatgggatcttcaactcctcacagtagatcctatccaaaaaggattatttttccgtaaaccaaatcctgagcaacctaaagagttagcaaaatcatcatcagaaattattaatcgcctaaaagtttcactctctgatactctaaatcattttcctcttctcgcgggtcgacttattgctagtaaaaatagtgatggcacctcatctttctttgtagattgcaacaatgaaggagctgagttcaattacgtcactgcacctgatttaactgtggatgatatcttggaacaaacttacgtgccaaagattgtcaagtatttcttcccactcaatggagtatgcaactatgaaggtgtttcaaaaccattgttggctgtgcaagtcacagagctagtggatggattcttcattggttgcactatcaatcattgtgtagcggatgggacttcattttggcatttcttcaattgttggtctgaaatagcgcgcagtggagattccaatcttatcgttaataaaccgccggttctggaccgnttggttcctgaatttgttgctagtccaattcatgtaccttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="15809" stop="14312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15509" g_stop="14969" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14968" i_stop="14839" i_length="130">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14838" g_stop="14612" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="768" r_length="227" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E333241" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15509" e_stop="14969"/>
          <exon e_start="14838" e_stop="14612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAGGTGAAATTAAATATAATTATGCCAACAACCCTAAAAGTTTTCGTTGTTACATAGATACTACACTTTTTAAGTTTCAACAGGAGCATGCATGACTCTTTTTTAAATTTTAAATTATATTGTGTCTCACCAGGTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCTTCAATTGTTGGTCTGAAATAGCGCGCAGTGGAGATTCCAATCTTATCGTTAATAAACCGCCGGTTCTGGACCGTTGGTTTCCTGAATTTGTTGCTAGTCCAATTCATGTACCTTTA</genome_strand>
        <mrna_strand>TTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAG..................................................................................................................................GTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCTTCAATTGTTGGTCTGAAATAGCGCGCAGTGGAGATTCCAATCTTATCGTTAATAAACCGCCGGTTCTGGACCGNTTGGTTCCTGAATTTGTTGCTAGTCCAATTCATGTACCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332698" ref_strand="+" ref_description="SGN-E332698 [cTOD-18-E19]">
      <seq>ctcagtttagcttctgcatcaaattttatattatatatatataggtatgtgagccatgactcattaagtataagtgaatttctcctcagtttagcttttgcaacaaatattcaaagatgacaaaacttcgagtagtatcagtatgtgtaattaggtcccaaaaattctcttcaagcaaaaaatccagttaactccatgggatcttcaactcctcacagtagatcctatccaaaaaggattatttttccgtaaaccaaatcctgagcaacctaaagagttagcaaaatcatcatcagaaattattaatcgcctaaaagtttcactctctgatactctaaatcattttcctcttctcgcgggtcgacttattgctagtaaaaatagtgatggcacctcatctttctttgtagattgcaacaatgaaggagctgagttcaattacgtcactgcacctgatttaactgtggatgatatcttggaacaaacttacgtgccaaagattgtcaagtatttcttcccactcaatggagtatgcaactatgaaggtgtttcaaaaccattgttggctgtgcaagtcacagagctagtggatggattcttcattggttgcactatcaatcattgtgtagcggatgggacttcattttggcatttctttcattgttggtctgaaatagcgcgcagtggagatccaatctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="15814" stop="14383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15514" g_stop="14969" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14968" i_stop="14839" i_length="130">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14838" g_stop="14683" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="700" r_length="155" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E332698" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15514" e_stop="14969"/>
          <exon e_start="14838" e_stop="14683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAGGTGAAATTAAATATAATTATGCCAACAACCCTAAAAGTTTTCGTTGTTACATAGATACTACACTTTTTAAGTTTCAACAGGAGCATGCATGACTCTTTTTTAAATTTTAAATTATATTGTGTCTCACCAGGTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCTTCAATTGTTGGTCTGAAATAGCGCGCAGTGGAGATTCCAATCTTA</genome_strand>
        <mrna_strand>CTCAGTTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGC-AAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAG..................................................................................................................................GTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCTTTCATTGTTGGTCTGAAATAGCGCGCAGTGGAGA-TCCAATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333539" ref_strand="+" ref_description="SGN-E333539 [cTOD-22-I11]">
      <seq>ctcagtttagcttctgcatcaaattttatattatatatatataggtatgtgagccatgactcattaagtataagtgaatttctcctcagtttagcttttgcaacaaatattcaaagatgacaaaacttcgagtagtatcagtatgtgtaattaggtcccaaaaattctcttcaagcaaaaaaatccagttaactccatgggatcttcaactcctcacagtagatcctatccaaaaaggattatttttccgtaaaccaaatcctgagcaacctaaagagttagcaaaatcatcatcagaaattattaatcgcctaaaagtttcactctctgatactctaaatcattttcctcttctcgcgggtcgacttattgctagtaaaaatagtgatggcacctcatctttctttgtagattgcaacaatgaaggagctgagttcaattacgtcactgcacctgatttaactgtggatgatatcttggaacaaacttacgtgccaaagattgtcaagtatttcttcccactcaatggagtatgcaactatgaaggtgtttcaaaaccattgttggctgtgcaagtcacagagctagtggatggattcttcattggttgcactatcaatcattgtgtagcggatgggacttcattttggcatttctttcattgttggtctgaaatagcgcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="15814" stop="14401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15514" g_stop="14969" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14968" i_stop="14839" i_length="130">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14838" g_stop="14701" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="684" r_length="138" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E333539" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15514" e_stop="14969"/>
          <exon e_start="14838" e_stop="14701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAGGTGAAATTAAATATAATTATGCCAACAACCCTAAAAGTTTTCGTTGTTACATAGATACTACACTTTTTAAGTTTCAACAGGAGCATGCATGACTCTTTTTTAAATTTTAAATTATATTGTGTCTCACCAGGTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCTTCAATTGTTGGTCTGAAATAGCGCGCA</genome_strand>
        <mrna_strand>CTCAGTTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAG..................................................................................................................................GTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCTTTCATTGTTGGTCTGAAATAGCGCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330909" ref_strand="+" ref_description="SGN-E330909 [cTOD-10-C8]">
      <seq>tgaatttctcctcagtttagcttttgcaacaaatattcaaagatgacaaaacttcgagtagtatcagtatgtgtaattaggtcccaaaaattctcttcaagcaaaaaaatccagttaactccatgggatcttcaactcctcacagtagatcctatccaaaaaggattatttttccgtaaaccaaatcctgagcaacctaaagagttagcaaaatcatcatcagaaattattaatcgcctaaaagtttcactctctgatactctaaatcattttcctcttctcgcgggtcgacttattgctagtaaaaatagtgatggcacctcatctttctttgtagattgcaacaatgaaggagctgagttcaattacgtcactgcacctgatttaactgtggatgatatcttggaacaaacttacgtgccaaagattgtcaagtatttcttcccactcaatggagtatgcaactatgaaggtgtttcaaaaccattgttggctgtgcaagtcacagagctagtggatggattcttcattggttgcactatcaatcattgtgtagcggatgggacttcattttggcatttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="15740" stop="14426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15440" g_stop="14969" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14968" i_stop="14839" i_length="130">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14838" g_stop="14726" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="585" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E330909" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15440" e_stop="14969"/>
          <exon e_start="14838" e_stop="14726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAGGTGAAATTAAATATAATTATGCCAACAACCCTAAAAGTTTTCGTTGTTACATAGATACTACACTTTTTAAGTTTCAACAGGAGCATGCATGACTCTTTTTTAAATTTTAAATTATATTGTGTCTCACCAGGTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCTTC</genome_strand>
        <mrna_strand>TGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAG..................................................................................................................................GTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330077" ref_strand="+" ref_description="SGN-E330077 [cTOD-5-E2]">
      <seq>tcagtttagcttctgcatcaaattttatattatatatatataggtatgtgagccatgactcattaagtataagtgaatttctcctcagtttagcttttgcaacaaatattcaaagatgacaaaacttcgagtagtatcagtatgtgtaattaggtcccaaaaattctcttcaagcaaaaaaatccagttaactccatgggatcttcaactcctcacagtagatcctatccaaaaaggattatttttccgtaaaccaaatcctgagcaacctaaagagttagcaaaatcatcatcagaaattattaatcgcctaaaagtttcactctctgatactctaaatcattttcctcttctcgcgggtcgacttattgctagtaaaaatagtgatggcacctcatctttctttgtagattgcaacaatgaaggagctgagttcaattacgtcactgcacctgatttaactgtggatgatatcttggaacaaacttacgtgccaaagattgtcaagtatttcttcccactcaatggagtatgcaactatgaaggtgtttcaaaaccattgttggctgtgcaagtcacagagctagtggatggattcttcattggttgcactatcaatcattgtgtagcggatgggacttcattttggcatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="15813" stop="14428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15513" g_stop="14969" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14968" i_stop="14839" i_length="130">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14838" g_stop="14728" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="656" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E330077" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15513" e_stop="14969"/>
          <exon e_start="14838" e_stop="14728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAGGTGAAATTAAATATAATTATGCCAACAACCCTAAAAGTTTTCGTTGTTACATAGATACTACACTTTTTAAGTTTCAACAGGAGCATGCATGACTCTTTTTTAAATTTTAAATTATATTGTGTCTCACCAGGTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCT</genome_strand>
        <mrna_strand>TCAGTTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAG..................................................................................................................................GTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242079" ref_strand="+" ref_description="SGN-E242079 [cLED-27-P16]">
      <seq>tttgcaacaaatattcaaagatgacaaaacttcgagtagtatcagtatgtgtaattaggtcccaaaaattctcttcaagcaaaaaaatccagttaactccatgggatcttcaactcctcacagtagatcctatccaaaaaggattatttttccgtaaaccaaatcctgagcaacctaaagagttagcaaaatcatcatcagaaattattaatcgcctaaaagtttcactctctgatactctaaatcattttcctcttctcgcgggtcgacttattgctagtaaaaatagtgatggcacctcatctttctttgtagattgcaacaatgaaggagctgagttcaattacgtcactgcacctgatttaactgtggatgatatcttggaacaaacttacgtgccaaagattgtcaagtatttcttcccactcaatggagtatgcaactatgaaggtgtttcaaaaccattgttggctgtgcaagtcacagagctagtggatggattcttcattggttgcactatcaatcattgtgtagcggatgggacttcattttggcatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="15718" stop="14429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15418" g_stop="14969" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14968" i_stop="14839" i_length="130">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14838" g_stop="14729" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="560" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E242079" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15418" e_stop="14969"/>
          <exon e_start="14838" e_stop="14729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAGGTGAAATTAAATATAATTATGCCAACAACCCTAAAAGTTTTCGTTGTTACATAGATACTACACTTTTTAAGTTTCAACAGGAGCATGCATGACTCTTTTTTAAATTTTAAATTATATTGTGTCTCACCAGGTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTC</genome_strand>
        <mrna_strand>TTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAG..................................................................................................................................GTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333650" ref_strand="+" ref_description="SGN-E333650 [cTOD-22-D12]">
      <seq>tgcatcaaattttatattatatatatataggtatgtgagccatgactcattaagtataagtgaatttctcctcagtttagcttttgcaacaaatattcaaagatgacaaaacttcgagtagtatcagtatgtgtaattaggtcccaaaaattctcttcaagcaaaaaaatccagttaactccatgggatcttcaactcctcacagtagatcctatccaaaaaggattatttttccgtaaaccaaatcctgagcaacctaaagagttagcaaaatcatcatcagaaattattaatcgcctaaaagtttcactctctgatactctaaatcattttcctcttctcgcgggtcgacttattgctagtaaaaatagtgatggcacctcatctttctttgtagattgcaacaatgaaggagctgagttcaattacgtcactgcacctgatttaactgtggatgatatcttggaacaaacttacgtgccaaagattgtcaagtatttcttcccactcaatggagtatgcaactatgaaggtgtttcaaaaccattgttggctgtgcaagtcacagagctagtggatggattcttcattggttgcactatcaatcattgtgtagcggatggggactcattttggcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="15800" stop="14431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15500" g_stop="14969" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14968" i_stop="14839" i_length="130">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14838" g_stop="14731" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="640" r_length="108" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E333650" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15500" e_stop="14969"/>
          <exon e_start="14838" e_stop="14731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAGGTGAAATTAAATATAATTATGCCAACAACCCTAAAAGTTTTCGTTGTTACATAGATACTACACTTTTTAAGTTTCAACAGGAGCATGCATGACTCTTTTTTAAATTTTAAATTATATTGTGTCTCACCAGGTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATT</genome_strand>
        <mrna_strand>TGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAG..................................................................................................................................GTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGGACTCATTTTGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334386" ref_strand="+" ref_description="SGN-E334386 [cTOD-21-D14]">
      <seq>tcagtttagcttctgcatcaaattttatattatatatatataggtatgtgagccatgactcattaagtataagtgaatttctcctcagtttagcttttgcaacaaatattcaaagatgacaaaacttcgagtagtatcagtatgtgtaattaggtcccaaaaattctcttcaagcaaaaaaatccagttaactccatgggatcttcaactcctcacagtagatcctatccaaaaaggattatttttccgtaaaccaaatcctgagcaacctaaagagttagcaaaatcatcatcagaaattattaatcgcctaaaagtttcactctctgatactctaaatcattttcctcttctcgcgggtcgacttattgctagtaaaaatagtgatggcacctcatctttctttgtagattgcaacaatgaaggagctgagttcaattacgtcactgcacctgatttaactgtggatgatatcttggaacaaacttacgtgccaaagattgtcaagtatttcttcccactcaatggagtatgcaactatgaaggtgtttcaaaaccattgttggctgtgcaagtcacagagctagtggatggattcttcattggttgcactatcaatcattgtgtagcggatgggacttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="15813" stop="14439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15513" g_stop="14969" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14968" i_stop="14839" i_length="130">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14838" g_stop="14739" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="645" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E334386" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15513" e_stop="14969"/>
          <exon e_start="14838" e_stop="14739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAGGTGAAATTAAATATAATTATGCCAACAACCCTAAAAGTTTTCGTTGTTACATAGATACTACACTTTTTAAGTTTCAACAGGAGCATGCATGACTCTTTTTTAAATTTTAAATTATATTGTGTCTCACCAGGTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATT</genome_strand>
        <mrna_strand>TCAGTTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAG..................................................................................................................................GTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333420" ref_strand="+" ref_description="SGN-E333420 [cTOD-20-F10]">
      <seq>tcagtttagcttctgcatcaaattttatattatatatatataggtatgtgagccatgactcattaagtataagtgaatttctcctcagtttagcttttgcaacaaatattcaaagatgacaaaacttcgagtagtatcagtatgtgtaattaggtcccaaaaattctcttcaagcaaaaaaatccagttaactccatgggatcttcaactcctcacagtagatcctatccaaaaaggattatttttccgtaaaccaaatcctgagcaacctaaagagttagcaaaatcatcatcagaaattattaatcgcctaaaagtttcactctctgatactctaaatcattttcctcttctcgcgggtcgacttattgctagtaaaaatagtgatggcacctcatctttctttgtagattgcaacaatgaaggagctgagttcaattacgtcactgcacctgatttaactgtggatgatatcttggaacaaacttacgtgccaaagattgtcaagtatttcttcccactcaatggagtatgcaactatgaaggtgtttcaaaaccattgtttggctgtgcaagtcacagagctagtggatggattcttcattggttgcactatcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="15813" stop="14464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15513" g_stop="14969" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14968" i_stop="14839" i_length="130">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14838" g_stop="14764" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="621" r_length="76" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E333420" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15513" e_stop="14969"/>
          <exon e_start="14838" e_stop="14764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAGGTGAAATTAAATATAATTATGCCAACAACCCTAAAAGTTTTCGTTGTTACATAGATACTACACTTTTTAAGTTTCAACAGGAGCATGCATGACTCTTTTTTAAATTTTAAATTATATTGTGTCTCACCAGGTGTTTCAAAACCATTG-TTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATC</genome_strand>
        <mrna_strand>TCAGTTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAG..................................................................................................................................GTGTTTCAAAACCATTGTTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330951" ref_strand="+" ref_description="SGN-E330951 [cTOD-10-F19]">
      <seq>tcattaagtataagtgaatttctcctcagtttagctggtgcagcgaatattcaaagatgacaaaacttcgagtagtatcagtatgtgtaattaggtcccaaaaattctcttcaagcaaaaaaatccagttaactccatgggatcttcaactcctcacagtagatcctatccaaaaaggattatttttccgtaaaccaaatcctgagcaacctaaagagttagcaaaatcatcatcagaaattattaatcgcctaaaagtttcactctctgatactctaaatcattttcctcttctcgcgggtcgacttattgctagtaaaaatagtgatggcacctcatctttctttgtagattgcaacaatgaaggagctgagttcaattacgtcactgcacctgatttaactgtggatgatatcttggaacaaacttacgtgccaaagattgtcaagtatttcttcccactcaatggagtatgcaactatgaaggtgtttcaaaaccattgttggctgtgcaagtcacagagctagtggatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="15754" stop="14489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15454" g_stop="14969" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14968" i_stop="14839" i_length="130">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14838" g_stop="14789" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="536" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E330951" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15454" e_stop="14969"/>
          <exon e_start="14838" e_stop="14789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAGGTGAAATTAAATATAATTATGCCAACAACCCTAAAAGTTTTCGTTGTTACATAGATACTACACTTTTTAAGTTTCAACAGGAGCATGCATGACTCTTTTTTAAATTTTAAATTATATTGTGTCTCACCAGGTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGA</genome_strand>
        <mrna_strand>TCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTGGTGCAGCGAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAG..................................................................................................................................GTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329841" ref_strand="+" ref_description="SGN-E329841 [cTOD-3-L3]">
      <seq>ttagcttctgcatcaaattttatattatatatatataggtatgtgagccatgactcattaagtataagtgaatttctcctcagtttagcttttgcaacaaatattcaaagatgacaaaacttcgagtagtatcagtatgtgtaattaggtcccaaaaattctcttcaagcaaaaaaatccagttaactccatgggatcttcaactcctcacagtagatcctatccaaaaaggattatttttccgtaaaccaaatcctgagcaacctaaagagttagcaaaatcatcatcagaaattattaatcgcctaaaagtttcactctctgatactctaaatcattttcctcttctcgcgggtcgacttattgctagtaaaaatagtgatggcacctcatctttctttgtagattgcaacaatgaaggagctgagttcaattacgtcactgcacctgatttaactgtggatgatatcttggaacaaacttacgtgccaaagattgtcaagtatttcttcccactcaatggagtatgcaactatgaaggtgtttcaaaaccattgttggctgtgcaagtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="15808" stop="14505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15508" g_stop="14969" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14968" i_stop="14839" i_length="130">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14838" g_stop="14805" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="574" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E329841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15508" e_stop="14969"/>
          <exon e_start="14838" e_stop="14805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAGGTGAAATTAAATATAATTATGCCAACAACCCTAAAAGTTTTCGTTGTTACATAGATACTACACTTTTTAAGTTTCAACAGGAGCATGCATGACTCTTTTTTAAATTTTAAATTATATTGTGTCTCACCAGGTGTTTCAAAACCATTGTTGGCTGTGCAAGTCAC</genome_strand>
        <mrna_strand>TTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAG..................................................................................................................................GTGTTTCAAAACCATTGTTGGCTGTGCAAGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331161" ref_strand="+" ref_description="SGN-E331161 [cTOD-6-H18]">
      <seq>gctcagtttagcttctgcatcaaattttatattatatatatataggtatgtgagccatgactcattaagtataagtgaatttctcctcagtttagcttttgcaacaaatattcaaagatgacaaaacttcgagtagtatcagtatgtgtaattaggtcccaaaaattctcttcaagcaaaaaaatccagttaactccatgggatcttcaactcctcacagtagatcctatccaaaaaggattatttttccgtaaaccaaatcctgagcaacctaaagagttagcaaaatcatcatcagaaattattaatcgcctaaaagtttcactctctgatactctaaatcattttcctcttctcgcgggtcgacttattgctagtaaaaatagtgatggcacctcatctttctttgtagattgcaacaatgaaggagctgagttcaattacgtcactgcacctgatttaactgtggatgatatcttggaacaaacttacgtgccaaagattgtcaagtatttcttcccactcaatggagtatgcaactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="15814" stop="14672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15515" g_stop="14972" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E331161" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15515" e_stop="14972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAGTTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATG</genome_strand>
        <mrna_strand>GCTCAGTTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330357" ref_strand="+" ref_description="SGN-E330357 [cTOD-4-C5]">
      <seq>tcagtttagcttctgcatcaaattttatattatatatatatagggatgtgagccatgactcattaagtataagtgaatttctcctcagtttagcttttgcaacaaatattcaaagatgacaaaacttcgagtagtatcagtatgtgtaattaggtcccaaaaattctcttcaagcaaaaaaatccagttaactccatgggatcttcaactcctcacagtagatcctatccaaaaaggattatttttccgtaaaccaaatcctgagcaacctaaagagttagcaaaatcatcatcagaaattattaatcgcctaaaagtttcactctctgatactctaaatcattttcctcttctcgcgggtcgacttattgctagtaaaaatagtgatggcacctcatctttctttgtagattgcaacaatgaaggagctgagttcaattacgtcactgcacctgatttaactgtggatgatatcttggaacaaacttacgtgccaaagattgtcaagtattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="15813" stop="14701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15513" g_stop="15001" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E330357" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15513" e_stop="15001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTT</genome_strand>
        <mrna_strand>TCAGTTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGGATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329461" ref_strand="+" ref_description="SGN-E329461 [cTOD-11-E22]">
      <seq>gtttatcttctgcatcaaattttatattggatatatgtaggtatgtgagccatgactcattaagtataagtgaatttctcctcagtttagcttttgcaacaaatattcaaagatgacaaaacttcgagtagtatcagtatgtgtaattaggtcccaaaaattctcttcaagcaaaaaaatccagttaactccatgggatcttcaactcctcacagtagatcctatccaaaaaggattatttttccgtaaaccaaatcctgagcaacctaaagagttagcaaaatcatcatcagaaattattaatcgcctaaaagtttcactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="15810" stop="14888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15510" g_stop="15188" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E329461" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15510" e_stop="15188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCT</genome_strand>
        <mrna_strand>GTTTATCTTCTGCATCAAATTTTATATTGGATATATGTAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267764" ref_strand="+" ref_description="SGN-E267764 [cLEI-12-P9]">
      <seq>tccgatgcagctaacaggatccgataattactccatttggagcagggccatgcgaatccaattgcttgggaagaacaagctgggtattgttgatggcagttggaaaaaggaggatttcggaactgaataggggcatcaatgggatcgatgtaatgcgattgttcaaggctggattatgagctctgtaactcaggatttgcatacaggtactatttatggcaacgagtgcacgagctgtttgggaggatcttcaagagcgttttgacaaagtaaatgcttaaaggatctatcaattgcataaagccatagccaccactgtacaagacaaaaattgacgcaatttttgacgggtctgaatgaaacctatgatcaatcacgtagtcagatattgatggttgaacctacgcccattattaacaaaggttatgctatgcttgttgagagggagagccaaagatcaatcacatctacatctatgagtggagaaggtacaaatctagctgccttcatggcagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="20211" stop="21418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20513" g_stop="20818" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="324" r_length="307" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20819" i_stop="20939" i_length="121">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20940" g_stop="21132" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="517" r_length="193" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E267764" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20513" e_stop="20818"/>
          <exon e_start="20940" e_stop="21132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCGATACTTACTCCATTTGGAGCAGAGCCATGCGAATCCAATTACTTGGGAAGAACAAGCTGGGTATTGTTGATGGTAGCTGGAAAAAGGAGGATTTCGGAACTAAATTGGGGCATTAATGGGATCGATGTAATGCGATTGTTCAAGGCTGGATTATGAGCTCTGTAACTCAGGATTTGCATGTAGGTATTGTTTAT-GCAACGAGTGCACAAGCTGTTTGGGAGGATCTTCGAGAGCGTTTTGACAAAGTAAATGCTTCAAGGATCTATCAATCGCATAAAGCCATAGCCACCACTGTACAAGGTATTGATAGTATACCGACTTATTTCTTTGAGTTGTGAATTTTATGGGATGAATTTGCTAGTATCACACCTCCACCCTGTAATTGTCCAAATTTTAAGGATCTGTCTATGCATATGGAGAGACAAAAATTGATGCAATTTTTGATGGATTTGAATGAAACCTATGAACAATCACGTAGTCAGATATTGATGGTTGAACCTACGCCCACTATTAACAAAGTTTATGCTATGCTTGTTGAGAGAGAGAGCCAAAGATCAATCATATCTACATCTATGAGTGAAGAAGGTACAGATTTAACTGTTCTCATGGCAGGA</genome_strand>
        <mrna_strand>GATCCGATAATTACTCCATTTGGAGCAGGGCCATGCGAATCCAATTGCTTGGGAAGAACAAGCTGGGTATTGTTGATGGCAGTTGGAAAAAGGAGGATTTCGGAACTGAATAGGGGCATCAATGGGATCGATGTAATGCGATTGTTCAAGGCTGGATTATGAGCTCTGTAACTCAGGATTTGCATACAGGTACTATTTATGGCAACGAGTGCACGAGCTGTTTGGGAGGATCTTCAAGAGCGTTTTGACAAAGTAAATGCTTAAAGGATCTATCAATTGCATAAAGCCATAGCCACCACTGTACAAG.........................................................................................................................ACAAAAATTGACGCAATTTTTGACGGGTCTGAATGAAACCTATGATCAATCACGTAGTCAGATATTGATGGTTGAACCTACGCCCATTATTAACAAAGGTTATGCTATGCTTGTTGAGAGGGAGAGCCAAAGATCAATCACATCTACATCTATGAGTGGAGAAGGTACAAATCTAGCTGCCTTCATGGCAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314149" ref_strand="+" ref_description="SGN-E314149 [cTOA-21-E22]">
      <seq>tttactatcccatgctgccgtgtttctcggagaagcacagtatgtggagaagacacagcacaggaggaggaggcgctaatggttacttcattttggtactgtgtcacttggctcttcactgcttactcatcactcgctcaactgcttgttctaatgggaattgccagcttcttgattcatgtgcttcggctacggattgtgggccttctttatactgtggtgattgccctgaattgggaaagagtcagcccttttgcatcagaggacaagctatagaacctacttccattatcagtggattgcccttcaacaaatactcgtggttggtcacccataatgccttttcaatggtaaatgcaccattattgacaggccctcagagaattacattctataatcaagaagacactgtcacaaaccaattgagaaatggagtgcggggattgatgctggatatgtacgattttgagaacgatatatggctctgtcactcatttcgtggccaatgttacaacttcactgcctttcaaccggcaattaacactttgaaagaagtggangcatttttgagcgcaaatcctacagaaatagtcaccatcataattgaggattatgtgcattccccaaagggtttaacnagggtatttgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="48551" stop="50444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48851" g_stop="49017" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49018" i_stop="49212" i_length="195">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49213" g_stop="49335" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="290" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49336" i_stop="49575" i_length="240">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.646" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49576" g_stop="49713" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="428" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49714" i_stop="49831" i_length="118">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49832" g_stop="49930" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="527" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49931" i_stop="50018" i_length="88">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50019" g_stop="50144" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="653" r_length="126" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E314149" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48851" e_stop="49017"/>
          <exon e_start="49213" e_stop="49335"/>
          <exon e_start="49576" e_stop="49713"/>
          <exon e_start="49832" e_stop="49930"/>
          <exon e_start="50019" e_stop="50144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTATCCCATGCTGCCGTGTTTCTCGGAGAAGCACAGTATGTGGAGAAGACACAGCACAGGAGGAGGAGGCGCTAATGGTTACTTCATTTTGGTACTGTGTCACTTGGCTCTTCACTGCTTACTCATCACTCGCTCAACTGCTTGTTCTAATGGGAATTGCCAGGTTCCTCTCTCTTTATTGATTTCTTGATATATACATTATGCAACAAAGATTTATTTGGGAAAAAAAACTCATTTTCTTGAATATTTGCGGTCTCTATACGCAATTCTTGTATGAATTCTTGAACCCCATTTGCAGATCCGTGCAATTTTCAATTTTCATTTGTGGGTTTCAGCTGAAATTTCATGAATATTACAGCTTCTTGATTCATGTGCTTCGGCTACGGATTGTGGGCCTTCTTTATACTGTGGTGATTGCCCTGAATTGGGAAAGAGTCAGCCCTTTTGCATCAGAGGACAAGCTATAGAACCTACTTCCATTGTAAGTTTCTTTCTAACTTTCTTTACTCTACTCTGCAGTTTCTGTTTTCTAAGCTGAGGTTTATCAGAAACAACCTTTCTATCTCATAGTGAGGTTGGGTTAGGGTAAGGTTTGCAAACTCTCTATCCTCTTCGAACCTCACTTGTGGTATTACACTGGGTATGTTATTGTTGTCCTTTTTGAGTAGCGATGATGTATGTATAATGCTTTTCTTCTCCTTTTGGACTTGGCAATGAGCAGATCAGTGGATTGCCCTTCAACAAATACTCGTGGTTGGTCACCCATAATGCCTTTTCAATGGTAAATGCACCATTATTGACAGGCCCTCAGAGAATTACATTCTATAATCAAGAAGACACTGTCACAAACCAATTGAGAGTATGTGGTTTCTTATATTTGTGATTTTTCCAACCTTCATCTCTTCTACATTCTGTTCAAAGACACGAGTTCTTATGCTCTTTTATACTAATTCTGTTTATTTTATCTATCTTCTTAGAATGGAGTGCGGGGATTGATGCTGGATATGTACGATTTTGAGAACGATATATGGCTCTGTCACTCATTTCGTGGCCAATGTTACAACTTCACTGCCTTTGTAATGTCATACAATCCCTCTCTTCTTTTGATGTGAGATTGCCTTTGAGTAGCTATTCTGATGTTAATATGTAAAATGTGCTTTCTAGCAACCGGCAATTAACACTTTGAAAGAGGTGGAGGCATTTTTGAGCGCAAATCCTACAGAAATAGTCACCATCATAATTGAGGATTATGTGCATTCCCCAAAGGGTTTAACAAGGGTATTTGCTGAT</genome_strand>
        <mrna_strand>TTTACTATCCCATGCTGCCGTGTTTCTCGGAGAAGCACAGTATGTGGAGAAGACACAGCACAGGAGGAGGAGGCGCTAATGGTTACTTCATTTTGGTACTGTGTCACTTGGCTCTTCACTGCTTACTCATCACTCGCTCAACTGCTTGTTCTAATGGGAATTGCCAG...................................................................................................................................................................................................CTTCTTGATTCATGTGCTTCGGCTACGGATTGTGGGCCTTCTTTATACTGTGGTGATTGCCCTGAATTGGGAAAGAGTCAGCCCTTTTGCATCAGAGGACAAGCTATAGAACCTACTTCCATT................................................................................................................................................................................................................................................ATCAGTGGATTGCCCTTCAACAAATACTCGTGGTTGGTCACCCATAATGCCTTTTCAATGGTAAATGCACCATTATTGACAGGCCCTCAGAGAATTACATTCTATAATCAAGAAGACACTGTCACAAACCAATTGAGA......................................................................................................................AATGGAGTGCGGGGATTGATGCTGGATATGTACGATTTTGAGAACGATATATGGCTCTGTCACTCATTTCGTGGCCAATGTTACAACTTCACTGCCTTT........................................................................................CAACCGGCAATTAACACTTTGAAAGAAGTGGANGCATTTTTGAGCGCAAATCCTACAGAAATAGTCACCATCATAATTGAGGATTATGTGCATTCCCCAAAGGGTTTAACNAGGGTATTTGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280824" ref_strand="-" ref_description="SGN-E280824 [cLEL-6-D20](-)">
      <seq>gcacgagcccatgctgccgtgtttttcggagaagcacagtatgtggagaagacacagcacaggaggaggagcgcctaatggttacttcattttggtactgtgtcacttggctcttcactgcttactcatcactcgctcaactgcttgttctaatgggaattgccagcttcttgattcatgtgcttcggctacggattgtgggccttctttatactgtggtgattgccctgaattgggaaagagtcagcccttttgcatcagaggacaagctatagaacctacttccattatcagtggattgcccttcaacaaatactcgtggttggtcacccataatgccttttcaatgtgtaatgcaccattattgacaggccctcagagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="48554" stop="49970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48852" g_stop="49017" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49018" i_stop="49212" i_length="195">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49213" g_stop="49335" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="289" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49336" i_stop="49575" i_length="240">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.646" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49576" g_stop="49670" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="384" r_length="95" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E280824" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280824" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48852" e_stop="49017"/>
          <exon e_start="49213" e_stop="49335"/>
          <exon e_start="49576" e_stop="49670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTATCCCATGCTGCCGTGTTTCTCGGAGAAGCACAGTATGTGGAGAAGACACAGCACAGGAGGAGGAGGCGCTAATGGTTACTTCATTTTGGTACTGTGTCACTTGGCTCTTCACTGCTTACTCATCACTCGCTCAACTGCTTGTTCTAATGGGAATTGCCAGGTTCCTCTCTCTTTATTGATTTCTTGATATATACATTATGCAACAAAGATTTATTTGGGAAAAAAAACTCATTTTCTTGAATATTTGCGGTCTCTATACGCAATTCTTGTATGAATTCTTGAACCCCATTTGCAGATCCGTGCAATTTTCAATTTTCATTTGTGGGTTTCAGCTGAAATTTCATGAATATTACAGCTTCTTGATTCATGTGCTTCGGCTACGGATTGTGGGCCTTCTTTATACTGTGGTGATTGCCCTGAATTGGGAAAGAGTCAGCCCTTTTGCATCAGAGGACAAGCTATAGAACCTACTTCCATTGTAAGTTTCTTTCTAACTTTCTTTACTCTACTCTGCAGTTTCTGTTTTCTAAGCTGAGGTTTATCAGAAACAACCTTTCTATCTCATAGTGAGGTTGGGTTAGGGTAAGGTTTGCAAACTCTCTATCCTCTTCGAACCTCACTTGTGGTATTACACTGGGTATGTTATTGTTGTCCTTTTTGAGTAGCGATGATGTATGTATAATGCTTTTCTTCTCCTTTTGGACTTGGCAATGAGCAGATCAGTGGATTGCCCTTCAACAAATACTCGTGGTTGGTCACCCATAATGCCTTTTCAATGGTAAATGCACCATTATTGACAGGCCCTCAGAGAAT</genome_strand>
        <mrna_strand>GCACGAGCCCATGCTGCCGTGTTTTTCGGAGAAGCACAGTATGTGGAGAAGACACAGCACAGGAGGAGGAGCGCCTAATGGTTACTTCATTTTGGTACTGTGTCACTTGGCTCTTCACTGCTTACTCATCACTCGCTCAACTGCTTGTTCTAATGGGAATTGCCAG...................................................................................................................................................................................................CTTCTTGATTCATGTGCTTCGGCTACGGATTGTGGGCCTTCTTTATACTGTGGTGATTGCCCTGAATTGGGAAAGAGTCAGCCCTTTTGCATCAGAGGACAAGCTATAGAACCTACTTCCATT................................................................................................................................................................................................................................................ATCAGTGGATTGCCCTTCAACAAATACTCGTGGTTGGTCACCCATAATGCCTTTTCAATGTGTAATGCACCATTATTGACAGGCCCTCAGAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314150" ref_strand="+" ref_description="SGN-E314150 [cTOA-21-G4]">
      <seq>tttctcggagaacacagtatgtggagaagacacagcacaggaggaggaggcgctaatggttacttcattttggtactgtgtcacttggctcttcactgcttactcatcactcgctcaactgcttgttctaatgggaattgccagcttcttgattcatgtgcttcggctacggattgtgggccttctttatactgtggtgattgccctgaattgggaaagagtcagcccttttgcatcagaggacaagctatagaacctacttccattatcagtggattgcccttcaacaaatactcgtggttggtcacccataatgccttttcaatggtaaatgcaccattattgacaggccctcagagaattacattctataatcaagaagacactgtcacaaaccaattgagaaatggagtgcggggaatgatgctggatatgtacgattttgagaacgatatatggctctgtcactcatttcgtggccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="48573" stop="50211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48873" g_stop="49017" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49018" i_stop="49212" i_length="195">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49213" g_stop="49335" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="267" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49336" i_stop="49575" i_length="240">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.646" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49576" g_stop="49713" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="405" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49714" i_stop="49831" i_length="118">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49832" g_stop="49911" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="485" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E314150" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48873" e_stop="49017"/>
          <exon e_start="49213" e_stop="49335"/>
          <exon e_start="49576" e_stop="49713"/>
          <exon e_start="49832" e_stop="49911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCGGAGAAGCACAGTATGTGGAGAAGACACAGCACAGGAGGAGGAGGCGCTAATGGTTACTTCATTTTGGTACTGTGTCACTTGGCTCTTCACTGCTTACTCATCACTCGCTCAACTGCTTGTTCTAATGGGAATTGCCAGGTTCCTCTCTCTTTATTGATTTCTTGATATATACATTATGCAACAAAGATTTATTTGGGAAAAAAAACTCATTTTCTTGAATATTTGCGGTCTCTATACGCAATTCTTGTATGAATTCTTGAACCCCATTTGCAGATCCGTGCAATTTTCAATTTTCATTTGTGGGTTTCAGCTGAAATTTCATGAATATTACAGCTTCTTGATTCATGTGCTTCGGCTACGGATTGTGGGCCTTCTTTATACTGTGGTGATTGCCCTGAATTGGGAAAGAGTCAGCCCTTTTGCATCAGAGGACAAGCTATAGAACCTACTTCCATTGTAAGTTTCTTTCTAACTTTCTTTACTCTACTCTGCAGTTTCTGTTTTCTAAGCTGAGGTTTATCAGAAACAACCTTTCTATCTCATAGTGAGGTTGGGTTAGGGTAAGGTTTGCAAACTCTCTATCCTCTTCGAACCTCACTTGTGGTATTACACTGGGTATGTTATTGTTGTCCTTTTTGAGTAGCGATGATGTATGTATAATGCTTTTCTTCTCCTTTTGGACTTGGCAATGAGCAGATCAGTGGATTGCCCTTCAACAAATACTCGTGGTTGGTCACCCATAATGCCTTTTCAATGGTAAATGCACCATTATTGACAGGCCCTCAGAGAATTACATTCTATAATCAAGAAGACACTGTCACAAACCAATTGAGAGTATGTGGTTTCTTATATTTGTGATTTTTCCAACCTTCATCTCTTCTACATTCTGTTCAAAGACACGAGTTCTTATGCTCTTTTATACTAATTCTGTTTATTTTATCTATCTTCTTAGAATGGAGTGCGGGGATTGATGCTGGATATGTACGATTTTGAGAACGATATATGGCTCTGTCACTCATTTCGTGGCCAATG</genome_strand>
        <mrna_strand>TTTCTCGGAGAA-CACAGTATGTGGAGAAGACACAGCACAGGAGGAGGAGGCGCTAATGGTTACTTCATTTTGGTACTGTGTCACTTGGCTCTTCACTGCTTACTCATCACTCGCTCAACTGCTTGTTCTAATGGGAATTGCCAG...................................................................................................................................................................................................CTTCTTGATTCATGTGCTTCGGCTACGGATTGTGGGCCTTCTTTATACTGTGGTGATTGCCCTGAATTGGGAAAGAGTCAGCCCTTTTGCATCAGAGGACAAGCTATAGAACCTACTTCCATT................................................................................................................................................................................................................................................ATCAGTGGATTGCCCTTCAACAAATACTCGTGGTTGGTCACCCATAATGCCTTTTCAATGGTAAATGCACCATTATTGACAGGCCCTCAGAGAATTACATTCTATAATCAAGAAGACACTGTCACAAACCAATTGAGA......................................................................................................................AATGGAGTGCGGGGAATGATGCTGGATATGTACGATTTTGAGAACGATATATGGCTCTGTCACTCATTTCGTGGCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396096" ref_strand="+" ref_description="SGN-E396096 [TUS-19-E19]">
      <seq>cgctaatggttacttcattttggtactgtgtcacttggctcttcactgcttactcatcactcgctcaactgcttgttctaatgggaattgccagcttcttgattcatgtgcttcggctacggattgtgggccttctttatactgtggtgattgccctgaattgggaaagagtcagcccttttgcatcagaggacaagctatagaacctacttccattatcagtggattgcccttcaacaaatactcgtggttggtcacccataatgccttttcaatggtaaatgcaccattattgacaggccctcagagaattacattctataatcaagaagacactgtcacaaaccaattgagaaatggagtgcggggattgatgctggatatgtacgattttgagaacgatatatggctctgtcggctgcatttcgtggccaatgttacaacttcactgcctttcaaccggcaattaacactttgaaagaggtggaggcatttttgagcgcaaatcctacagaaataatcaccatcataattgaggattatgtgcatttccccaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="48624" stop="50421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48924" g_stop="49017" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49018" i_stop="49212" i_length="195">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49213" g_stop="49335" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="217" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49336" i_stop="49575" i_length="240">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.646" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49576" g_stop="49713" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="355" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49714" i_stop="49831" i_length="118">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49832" g_stop="49930" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="456" r_length="101" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49931" i_stop="50018" i_length="88">
            <donor d_prob="0.886" d_score="0.90"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50019" g_stop="50121" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="560" r_length="104" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E396096" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48924" e_stop="49017"/>
          <exon e_start="49213" e_stop="49335"/>
          <exon e_start="49576" e_stop="49713"/>
          <exon e_start="49832" e_stop="49930"/>
          <exon e_start="50019" e_stop="50121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTAATGGTTACTTCATTTTGGTACTGTGTCACTTGGCTCTTCACTGCTTACTCATCACTCGCTCAACTGCTTGTTCTAATGGGAATTGCCAGGTTCCTCTCTCTTTATTGATTTCTTGATATATACATTATGCAACAAAGATTTATTTGGGAAAAAAAACTCATTTTCTTGAATATTTGCGGTCTCTATACGCAATTCTTGTATGAATTCTTGAACCCCATTTGCAGATCCGTGCAATTTTCAATTTTCATTTGTGGGTTTCAGCTGAAATTTCATGAATATTACAGCTTCTTGATTCATGTGCTTCGGCTACGGATTGTGGGCCTTCTTTATACTGTGGTGATTGCCCTGAATTGGGAAAGAGTCAGCCCTTTTGCATCAGAGGACAAGCTATAGAACCTACTTCCATTGTAAGTTTCTTTCTAACTTTCTTTACTCTACTCTGCAGTTTCTGTTTTCTAAGCTGAGGTTTATCAGAAACAACCTTTCTATCTCATAGTGAGGTTGGGTTAGGGTAAGGTTTGCAAACTCTCTATCCTCTTCGAACCTCACTTGTGGTATTACACTGGGTATGTTATTGTTGTCCTTTTTGAGTAGCGATGATGTATGTATAATGCTTTTCTTCTCCTTTTGGACTTGGCAATGAGCAGATCAGTGGATTGCCCTTCAACAAATACTCGTGGTTGGTCACCCATAATGCCTTTTCAATGGTAAATGCACCATTATTGACAGGCCCTCAGAGAATTACATTCTATAATCAAGAAGACACTGTCACAAACCAATTGAGAGTATGTGGTTTCTTATATTTGTGATTTTTCCAACCTTCATCTCTTCTACATTCTGTTCAAAGACACGAGTTCTTATGCTCTTTTATACTAATTCTGTTTATTTTATCTATCTTCTTAGAATGGAGTGCGGGGATTGATGCTGGATATGTACGATTTTGAGAACGATATATGGCTCTGTC-ACT-CATTTCGTGGCCAATGTTACAACTTCACTGCCTTTGTAATGTCATACAATCCCTCTCTTCTTTTGATGTGAGATTGCCTTTGAGTAGCTATTCTGATGTTAATATGTAAAATGTGCTTTCTAGCAACCGGCAATTAACACTTTGAAAGAGGTGGAGGCATTTTTGAGCGCAAATCCTACAGAAATAGTCACCATCATAATTGAGGATTATGTGCA-TTCCCCAAAGG</genome_strand>
        <mrna_strand>CGCTAATGGTTACTTCATTTTGGTACTGTGTCACTTGGCTCTTCACTGCTTACTCATCACTCGCTCAACTGCTTGTTCTAATGGGAATTGCCAG...................................................................................................................................................................................................CTTCTTGATTCATGTGCTTCGGCTACGGATTGTGGGCCTTCTTTATACTGTGGTGATTGCCCTGAATTGGGAAAGAGTCAGCCCTTTTGCATCAGAGGACAAGCTATAGAACCTACTTCCATT................................................................................................................................................................................................................................................ATCAGTGGATTGCCCTTCAACAAATACTCGTGGTTGGTCACCCATAATGCCTTTTCAATGGTAAATGCACCATTATTGACAGGCCCTCAGAGAATTACATTCTATAATCAAGAAGACACTGTCACAAACCAATTGAGA......................................................................................................................AATGGAGTGCGGGGATTGATGCTGGATATGTACGATTTTGAGAACGATATATGGCTCTGTCGGCTGCATTTCGTGGCCAATGTTACAACTTCACTGCCTTT........................................................................................CAACCGGCAATTAACACTTTGAAAGAGGTGGAGGCATTTTTGAGCGCAAATCCTACAGAAATAATCACCATCATAATTGAGGATTATGTGCATTTCCCCAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231034" ref_strand="+" ref_description="SGN-E231034 [cLED-5-D13]">
      <seq>gctaatggttacttcattttggtactgtgtcacttggctcttcactgcttactcatcactcgctcaactgcttgttctaatgggaattgccagcttcttgattcatgtgcttcggctacggattgtgggccttctttatactgtggtgattgccctgaattgggaaagagtcagcccttttgcatcagaggacaagctatagaacctacttccattatcagtggattgcccttcaacaaatactcgtggttggtcacccataatgccttttcaatggtaaatgcaccattattgacaggccctcagagaattacattctataatcaagaagacactgtcacaaaccaattgagaaatggagtgcggggattgatgctggatatgtacgattttgagaacgatatatggctctgtcactcatttcgtggccaatgttacaacttcactgcctttcaaccggcaattaacactttgaaagaggtggaggcatttttgagcgcaaatcctacagaaatagtcaccatcataattgaggattatgtgcattccccaaagggtttaacaagggtatttgctgatgctgggttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="48625" stop="50455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48925" g_stop="49017" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49018" i_stop="49212" i_length="195">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49213" g_stop="49335" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="216" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49336" i_stop="49575" i_length="240">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.646" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49576" g_stop="49713" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="354" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49714" i_stop="49831" i_length="118">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49832" g_stop="49930" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="453" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49931" i_stop="50018" i_length="88">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50019" g_stop="50155" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="590" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E231034" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48925" e_stop="49017"/>
          <exon e_start="49213" e_stop="49335"/>
          <exon e_start="49576" e_stop="49713"/>
          <exon e_start="49832" e_stop="49930"/>
          <exon e_start="50019" e_stop="50155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAATGGTTACTTCATTTTGGTACTGTGTCACTTGGCTCTTCACTGCTTACTCATCACTCGCTCAACTGCTTGTTCTAATGGGAATTGCCAGGTTCCTCTCTCTTTATTGATTTCTTGATATATACATTATGCAACAAAGATTTATTTGGGAAAAAAAACTCATTTTCTTGAATATTTGCGGTCTCTATACGCAATTCTTGTATGAATTCTTGAACCCCATTTGCAGATCCGTGCAATTTTCAATTTTCATTTGTGGGTTTCAGCTGAAATTTCATGAATATTACAGCTTCTTGATTCATGTGCTTCGGCTACGGATTGTGGGCCTTCTTTATACTGTGGTGATTGCCCTGAATTGGGAAAGAGTCAGCCCTTTTGCATCAGAGGACAAGCTATAGAACCTACTTCCATTGTAAGTTTCTTTCTAACTTTCTTTACTCTACTCTGCAGTTTCTGTTTTCTAAGCTGAGGTTTATCAGAAACAACCTTTCTATCTCATAGTGAGGTTGGGTTAGGGTAAGGTTTGCAAACTCTCTATCCTCTTCGAACCTCACTTGTGGTATTACACTGGGTATGTTATTGTTGTCCTTTTTGAGTAGCGATGATGTATGTATAATGCTTTTCTTCTCCTTTTGGACTTGGCAATGAGCAGATCAGTGGATTGCCCTTCAACAAATACTCGTGGTTGGTCACCCATAATGCCTTTTCAATGGTAAATGCACCATTATTGACAGGCCCTCAGAGAATTACATTCTATAATCAAGAAGACACTGTCACAAACCAATTGAGAGTATGTGGTTTCTTATATTTGTGATTTTTCCAACCTTCATCTCTTCTACATTCTGTTCAAAGACACGAGTTCTTATGCTCTTTTATACTAATTCTGTTTATTTTATCTATCTTCTTAGAATGGAGTGCGGGGATTGATGCTGGATATGTACGATTTTGAGAACGATATATGGCTCTGTCACTCATTTCGTGGCCAATGTTACAACTTCACTGCCTTTGTAATGTCATACAATCCCTCTCTTCTTTTGATGTGAGATTGCCTTTGAGTAGCTATTCTGATGTTAATATGTAAAATGTGCTTTCTAGCAACCGGCAATTAACACTTTGAAAGAGGTGGAGGCATTTTTGAGCGCAAATCCTACAGAAATAGTCACCATCATAATTGAGGATTATGTGCATTCCCCAAAGGGTTTAACAAGGGTATTTGCTGATGCTGGGTTGGA</genome_strand>
        <mrna_strand>GCTAATGGTTACTTCATTTTGGTACTGTGTCACTTGGCTCTTCACTGCTTACTCATCACTCGCTCAACTGCTTGTTCTAATGGGAATTGCCAG...................................................................................................................................................................................................CTTCTTGATTCATGTGCTTCGGCTACGGATTGTGGGCCTTCTTTATACTGTGGTGATTGCCCTGAATTGGGAAAGAGTCAGCCCTTTTGCATCAGAGGACAAGCTATAGAACCTACTTCCATT................................................................................................................................................................................................................................................ATCAGTGGATTGCCCTTCAACAAATACTCGTGGTTGGTCACCCATAATGCCTTTTCAATGGTAAATGCACCATTATTGACAGGCCCTCAGAGAATTACATTCTATAATCAAGAAGACACTGTCACAAACCAATTGAGA......................................................................................................................AATGGAGTGCGGGGATTGATGCTGGATATGTACGATTTTGAGAACGATATATGGCTCTGTCACTCATTTCGTGGCCAATGTTACAACTTCACTGCCTTT........................................................................................CAACCGGCAATTAACACTTTGAAAGAGGTGGAGGCATTTTTGAGCGCAAATCCTACAGAAATAGTCACCATCATAATTGAGGATTATGTGCATTCCCCAAAGGGTTTAACAAGGGTATTTGCTGATGCTGGGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347608" ref_strand="+" ref_description="SGN-E347608 [cTOF-26-F3]">
      <seq>ttccattatcagtggattgcccttcaacaaatactcgtggttggtcacccataatgccttttcaatggtaaatgcaccattattgacaggccctcagagaattacattctataatcaagaagacactgtcacaaaccaattgagaaatggagtgcggggattgatgctggatatgtacgattttgagaacgatatatggctctgtcactcatttcgtggccaatgttacaacttcactgcctttcaaccggcaattaacactttgaaagaggtggaggcatttttgagcgcaaatcctacagaaatagtcaccatcataattgaggattatgtgcattccccaaagggtttaacaagggtatttgctgatgctgggttggacaagtattggtttcctgtttctaagatgccgagaaaaggtgatgattggcccactgtgaatgatatggttaaaaagaattatcgtctgttggtttttacttctgactcttccaaggaagctgctgaaggaattgcttatcagtggagatacatggttgaaaatgagcctggagaccctgnagtggtgcctggctcatgctccagtcgtaaggaatcaaaggcacttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="49276" stop="50765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49329" g_stop="49335" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49336" i_stop="49575" i_length="240">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.646" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49576" g_stop="49713" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="145" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49714" i_stop="49831" i_length="118">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49832" g_stop="49930" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="244" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49931" i_stop="50018" i_length="88">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50019" g_stop="50322" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="548" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50323" i_stop="50403" i_length="81">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50404" g_stop="50465" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="610" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E347608" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49329" e_stop="49335"/>
          <exon e_start="49576" e_stop="49713"/>
          <exon e_start="49832" e_stop="49930"/>
          <exon e_start="50019" e_stop="50322"/>
          <exon e_start="50404" e_stop="50465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATTGTAAGTTTCTTTCTAACTTTCTTTACTCTACTCTGCAGTTTCTGTTTTCTAAGCTGAGGTTTATCAGAAACAACCTTTCTATCTCATAGTGAGGTTGGGTTAGGGTAAGGTTTGCAAACTCTCTATCCTCTTCGAACCTCACTTGTGGTATTACACTGGGTATGTTATTGTTGTCCTTTTTGAGTAGCGATGATGTATGTATAATGCTTTTCTTCTCCTTTTGGACTTGGCAATGAGCAGATCAGTGGATTGCCCTTCAACAAATACTCGTGGTTGGTCACCCATAATGCCTTTTCAATGGTAAATGCACCATTATTGACAGGCCCTCAGAGAATTACATTCTATAATCAAGAAGACACTGTCACAAACCAATTGAGAGTATGTGGTTTCTTATATTTGTGATTTTTCCAACCTTCATCTCTTCTACATTCTGTTCAAAGACACGAGTTCTTATGCTCTTTTATACTAATTCTGTTTATTTTATCTATCTTCTTAGAATGGAGTGCGGGGATTGATGCTGGATATGTACGATTTTGAGAACGATATATGGCTCTGTCACTCATTTCGTGGCCAATGTTACAACTTCACTGCCTTTGTAATGTCATACAATCCCTCTCTTCTTTTGATGTGAGATTGCCTTTGAGTAGCTATTCTGATGTTAATATGTAAAATGTGCTTTCTAGCAACCGGCAATTAACACTTTGAAAGAGGTGGAGGCATTTTTGAGCGCAAATCCTACAGAAATAGTCACCATCATAATTGAGGATTATGTGCATTCCCCAAAGGGTTTAACAAGGGTATTTGCTGATGCTGGGTTGGACAAGTATTGGTTTCCTGTTTCTAAGATGCCGAGAAAAGGTGATGATTGGCCCACTGTGAATGATATGGTTAAAAAGAATTATCGTCTGTTGGTTTTTACTTCTGACTCTTCCAAGGAAGCTGCTGAAGGAATTGCTTATCAGTGGAGATACATGGTTGAAAATGAGCGTAAGTACTAATCGCTCCTTTTTGGTGATTCTGGTTTGTGGATTGATTCTGTAGCAATAATATGTGGTAATGATGTTTCAGCTGGAGACCCTGGAGTGGTGCCTGGCTCATGCTCCAGTCGTAAGGAATCAAAGGCACTTAAT</genome_strand>
        <mrna_strand>TTCCATT................................................................................................................................................................................................................................................ATCAGTGGATTGCCCTTCAACAAATACTCGTGGTTGGTCACCCATAATGCCTTTTCAATGGTAAATGCACCATTATTGACAGGCCCTCAGAGAATTACATTCTATAATCAAGAAGACACTGTCACAAACCAATTGAGA......................................................................................................................AATGGAGTGCGGGGATTGATGCTGGATATGTACGATTTTGAGAACGATATATGGCTCTGTCACTCATTTCGTGGCCAATGTTACAACTTCACTGCCTTT........................................................................................CAACCGGCAATTAACACTTTGAAAGAGGTGGAGGCATTTTTGAGCGCAAATCCTACAGAAATAGTCACCATCATAATTGAGGATTATGTGCATTCCCCAAAGGGTTTAACAAGGGTATTTGCTGATGCTGGGTTGGACAAGTATTGGTTTCCTGTTTCTAAGATGCCGAGAAAAGGTGATGATTGGCCCACTGTGAATGATATGGTTAAAAAGAATTATCGTCTGTTGGTTTTTACTTCTGACTCTTCCAAGGAAGCTGCTGAAGGAATTGCTTATCAGTGGAGATACATGGTTGAAAATGAGC.................................................................................CTGGAGACCCTGNAGTGGTGCCTGGCTCATGCTCCAGTCGTAAGGAATCAAAGGCACTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699403" ref_strand="+" ref_description="SGN-E699403 [FA09DG08]">
      <seq>ccattattttgagaacgatatatggctctgtcactcatttcgcggccaatgttacaacttcactgcctttcaaccggcaattaacactttgaaagaggtggaggcatttttgagcgcaaatcctacagaaatagtcaccatcataattgaggattatgtgcattccccaaagggtttaacaagggtatttgctgatgctgggttggacaagtattggtttcctgtttctaagatgccgagaaaaggtgatgattggcccactgtgaatgatatggttaaaaagaattatcgtctgttggtttttacttctgactcttccaaggaagctgctgaaggaattgcttatcagtggagatacatggttgaaaatgagcctggagaccctggagtggtgcctggctcatgctccagtcgtaaggaatcaaaggcacttaattccagaagtgcttctctgtttctaatgaattactttcccacagttgccgtacaagatggagcctgcaaagagcattcaactcaatttgttgatacgattggtgcctgttacaaagcaccaggcaacatgatgcccaattatgtggcagtaaacttttacatgagaagcgatgggggaggagtttttgatgtcttacatcaaatgaacggtcggacactatgtggttgcccgacggccactgcatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="49566" stop="51098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49861" g_stop="49930" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49931" i_stop="50018" i_length="88">
            <donor d_prob="0.886" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50019" g_stop="50322" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="374" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50323" i_stop="50403" i_length="81">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50404" g_stop="50627" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="598" r_length="224" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50628" i_stop="50713" i_length="86">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50714" g_stop="50798" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="683" r_length="85" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E699403" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49861" e_stop="49930"/>
          <exon e_start="50019" e_stop="50322"/>
          <exon e_start="50404" e_stop="50627"/>
          <exon e_start="50714" e_stop="50798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACGATTTTGAGAACGATATATGGCTCTGTCACTCATTTCGTGGCCAATGTTACAACTTCACTGCCTTTGTAATGTCATACAATCCCTCTCTTCTTTTGATGTGAGATTGCCTTTGAGTAGCTATTCTGATGTTAATATGTAAAATGTGCTTTCTAGCAACCGGCAATTAACACTTTGAAAGAGGTGGAGGCATTTTTGAGCGCAAATCCTACAGAAATAGTCACCATCATAATTGAGGATTATGTGCATTCCCCAAAGGGTTTAACAAGGGTATTTGCTGATGCTGGGTTGGACAAGTATTGGTTTCCTGTTTCTAAGATGCCGAGAAAAGGTGATGATTGGCCCACTGTGAATGATATGGTTAAAAAGAATTATCGTCTGTTGGTTTTTACTTCTGACTCTTCCAAGGAAGCTGCTGAAGGAATTGCTTATCAGTGGAGATACATGGTTGAAAATGAGCGTAAGTACTAATCGCTCCTTTTTGGTGATTCTGGTTTGTGGATTGATTCTGTAGCAATAATATGTGGTAATGATGTTTCAGCTGGAGACCCTGGAGTGGTGCCTGGCTCATGCTCCAGTCGTAAGGAATCAAAGGCACTTAATTCCAGAAGTGCTTCTCTGTTTCTAATGAATTACTTTCCCACAGTTGCCGTACAAGATGGAGCCTGCAAAGAGCATTCAACTCAATTTGTTGATACGATTGGTGCCTGTTACAAAGCAGCAGGCAACATGATGCCCAATTATGTGGCAGTAAACTTTTACATGGTATTAAAATATTTACTGCTTACTGATGCTGGTGCAGAATTACTAAATATTTTCAACATTGACTGATGAAAAACAAAATCCTGCAGAGAAGTGATGGGGGAGGAGTTTTTGATGTTTTAGATCAAATGAACGGTCGGACACTATGTGGTTGCCCGACGGTCACTGCATGCC</genome_strand>
        <mrna_strand>CCATTATTTTGAGAACGATATATGGCTCTGTCACTCATTTCGCGGCCAATGTTACAACTTCACTGCCTTT........................................................................................CAACCGGCAATTAACACTTTGAAAGAGGTGGAGGCATTTTTGAGCGCAAATCCTACAGAAATAGTCACCATCATAATTGAGGATTATGTGCATTCCCCAAAGGGTTTAACAAGGGTATTTGCTGATGCTGGGTTGGACAAGTATTGGTTTCCTGTTTCTAAGATGCCGAGAAAAGGTGATGATTGGCCCACTGTGAATGATATGGTTAAAAAGAATTATCGTCTGTTGGTTTTTACTTCTGACTCTTCCAAGGAAGCTGCTGAAGGAATTGCTTATCAGTGGAGATACATGGTTGAAAATGAGC.................................................................................CTGGAGACCCTGGAGTGGTGCCTGGCTCATGCTCCAGTCGTAAGGAATCAAAGGCACTTAATTCCAGAAGTGCTTCTCTGTTTCTAATGAATTACTTTCCCACAGTTGCCGTACAAGATGGAGCCTGCAAAGAGCATTCAACTCAATTTGTTGATACGATTGGTGCCTGTTACAAAGCACCAGGCAACATGATGCCCAATTATGTGGCAGTAAACTTTTACATG......................................................................................AGAAGCGATGGGGGAGGAGTTTTTGATGTCTTACATCAAATGAACGGTCGGACACTATGTGGTTGCCCGACGGCCACTGCATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344158" ref_strand="+" ref_description="SGN-E344158 [cTOF-16-M4]">
      <seq>cctggctcatgctccagtcgtaaggaatcaaaggcacttaattccagaagtgcttctctgtttctaatgaattactttcccacagttgccgtacaagatggagcctgcaaagagcattcaactcaatttgttgatacgattggtgcctgttacaaagcagcaggcaacatgatgcccaattatgtggcagtaaacttttacatgagaagtgatgggggaggagtttttgatgttttagatcaaatgaacggtcggacactatgtggttgcccgacggtcactgcatgccaggtgggggtacattttggagtttgtaagaatactactgcagcgaatgcagctcctacagcaaccaatactgctggaatgttttcagggtccgtgcaattaacaggccatgcttcaacaatccatttttccactaccttatacctattttcattgtcttctgtaatggtgttgtttctactatgagaagaaaaagagagttccacgcagaagttacatgagtttcatccacggatgctcgatatctactatattaccctgtgtagaattatggagtcggaataggtacagtatacactagaatccacttcggcatgtctgagatgatgaatgttcaacttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="50124" stop="52854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50424" g_stop="50627" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50628" i_stop="50713" i_length="86">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50714" g_stop="50800" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="291" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50801" i_stop="52213" i_length="1413">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52214" g_stop="52554" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="632" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E344158" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50424" e_stop="50627"/>
          <exon e_start="50714" e_stop="50800"/>
          <exon e_start="52214" e_stop="52554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGCTCATGCTCCAGTCGTAAGGAATCAAAGGCACTTAATTCCAGAAGTGCTTCTCTGTTTCTAATGAATTACTTTCCCACAGTTGCCGTACAAGATGGAGCCTGCAAAGAGCATTCAACTCAATTTGTTGATACGATTGGTGCCTGTTACAAAGCAGCAGGCAACATGATGCCCAATTATGTGGCAGTAAACTTTTACATGGTATTAAAATATTTACTGCTTACTGATGCTGGTGCAGAATTACTAAATATTTTCAACATTGACTGATGAAAAACAAAATCCTGCAGAGAAGTGATGGGGGAGGAGTTTTTGATGTTTTAGATCAAATGAACGGTCGGACACTATGTGGTTGCCCGACGGTCACTGCATGCCAGGTTATTTTTTCTCAAATATCCAATATTTGGATAACTGCTTTAGTTGTAAACATGTGTCTATGTGCCAAAGGTTCACTCTATGAAGAGAGATAGGAGGAAGAACCATGATTGATTCTCTTTAAGTTGAGTCATTATGTAGTCCGTAGGTGACACATTTTTTTTCAATACGGTAGTAGAAAAAGTAACATAAGTCTGTCCAAAAAAGAAAAAGAAGTGAAAGTCCACAATTAGAAATAGCTTTTGAAGAAACCTTGTAGATGAGAAATAGCATGCTGCTTATGATTTATCAGATCACAGGAGCTTGAAACATCGATTGCAACATCTTTTTCTTGACTTCAAACAAATTTGATGTATTATTCACGGTAGAAGTGGTGAGGCTAGCCCGTGATATTTAACATCCTCCTCACATGAATAGTTTAAAAAAAACAACAACTTAGCAATCAGCAGGAGAGTTGACTTGCAGTTTTGCACCATCTTTGCCTACATATGGTCAAAAAGTTCTGATATAGGATGTTCCTTCCTAGTCTCCTTTGTAACCTATGTCTCAAAATAAAAATGTGCAATATGATGACATACCTGGAAGATCTAATCTTAAACATGACTTTGATGAGTGACGTGATCTTTTGATATTAATCTTTGATAAAAATTGGAAGATTTGTGCTGGAAGGACATTGTCATGATTGAACTCACAAAATTCCTTAACATAGCTTCATTAGCTTTTATTATGATAAACTGTTTTCGCCTTTATGGATATTGCAAACATTCTGAGGGATCTATTAAGCTTAAAGAGTTTTGTTGGTCAAACAATTCTTCAGAAATATAGGGTCATCACTGAGATTCTCAGTAGCAGCCTTCAAGAGACAAGAAGTACATATCTCAATATAAAAACTAGCGATATACTTGACAGTTTCTTCTCAGATGACATATCAGACCATTTCTCATTACCATTCTGTTGGTTCCAATTGAAATGTCTCAGCTTGGCTTAACTTTGTTATTAAGAAAAAAGTTGAAATAATGAATTGTTTATGATGTATTGGAGGCATGCATACATGACTACATGAGGCCATAGTTTCACTTTTCCTTTTCAGAATACAGAATCAAGAAAAGCTAGTTTAAGATGACCGAAAATAGGCCCTGTAATATTTTTGAATCATACCATGGTTTAAGTTTGTTTTTCAGGAAAGTTGACACTATATTATAGCAGACCAAAATGTAAAGGTTGACATTCAATTTGGGAAGGAAGGAATCGTTTTCATTTGGGTAATAGACTGTTCTGGAAGATTTACTTGAAGTTGAGGGAAAAGAAACATGGTTGTACTGAAGCTTTTTCTGTGGAGTCAAGGATGCAGCCTCAAAGTTGTTACAAAAATTATCATTTTAGAACTTGTTCTTAAATGGACTTTCTTTTTGCAGGTGGGGGTACATTTTGGAGTTTGTAAGAATACTACTGCAGCGAATGCAGCTCCTACAGCAACCAATACTGCTGGAATGTTTTCAGGGTCCGTGCAATTAACAGGCCATGCTTCAACAATCCATTTTTCCACTACCTTATACCTATTTTCATTGTCTTCTGTAATGGTGTTGTTTCTACTATGAGAAGAAAAAGAGAGTTCCACGCAGAAGTTACATGAGTTTCATCCACGGATGCTCGATATCTACTATATTACCCTGTGTAGAATTATGGAGTCGGAATAGGTACAGTATACACTAGAATCCACTTCGGCATGTCTGAGATGATGAATGTTCAACTTGAC</genome_strand>
        <mrna_strand>CCTGGCTCATGCTCCAGTCGTAAGGAATCAAAGGCACTTAATTCCAGAAGTGCTTCTCTGTTTCTAATGAATTACTTTCCCACAGTTGCCGTACAAGATGGAGCCTGCAAAGAGCATTCAACTCAATTTGTTGATACGATTGGTGCCTGTTACAAAGCAGCAGGCAACATGATGCCCAATTATGTGGCAGTAAACTTTTACATG......................................................................................AGAAGTGATGGGGGAGGAGTTTTTGATGTTTTAGATCAAATGAACGGTCGGACACTATGTGGTTGCCCGACGGTCACTGCATGCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGGTACATTTTGGAGTTTGTAAGAATACTACTGCAGCGAATGCAGCTCCTACAGCAACCAATACTGCTGGAATGTTTTCAGGGTCCGTGCAATTAACAGGCCATGCTTCAACAATCCATTTTTCCACTACCTTATACCTATTTTCATTGTCTTCTGTAATGGTGTTGTTTCTACTATGAGAAGAAAAAGAGAGTTCCACGCAGAAGTTACATGAGTTTCATCCACGGATGCTCGATATCTACTATATTACCCTGTGTAGAATTATGGAGTCGGAATAGGTACAGTATACACTAGAATCCACTTCGGCATGTCTGAGATGATGAATGTTCAACTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356883" ref_strand="+" ref_description="SGN-E356883 [cTOS-22-G16]">
      <seq>acattttggagtttgtaagaatactactgcagcgaatgcagctcctacagcaaccaatactgctggaatgttttcagggtccgtgcaattaacaggccatgcttcaacaatccatttttccactaccttatacctattttcattgtcttctgtaatggtgttgtttctactatgagaagaaaaagagagttccacgcagaagttacatgagtttcatccacggatgctcgatatctactatattaccctgtgtagaattatggagtcggaataggtacagtatacactagaatccacttcggcatgtctgagatgatgaatgttcaacttgacattttcctagtaaaatataacttgtcattttataggagatttggatatagaagtaagcaagggattggagaagagtatcaacatgtaacagatacttttatcacatcccatgtgcattttctagctgccagtttttcccccttggtatgttgacaatgatagtcttattcttcaactgaattttggttaattttttcagtatgaaaaatgttatgttcctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="51922" stop="53076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52222" g_stop="52775" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="555" polyA_stop="564"/>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E356883" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52222" e_stop="52775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTTGGAGTTTGTAAGAATACTACTGCAGCGAATGCAGCTCCTACAGCAACCAATACTGCTGGAATGTTTTCAGGGTCCGTGCAATTAACAGGCCATGCTTCAACAATCCATTTTTCCACTACCTTATACCTATTTTCATTGTCTTCTGTAATGGTGTTGTTTCTACTATGAGAAGAAAAAGAGAGTTCCACGCAGAAGTTACATGAGTTTCATCCACGGATGCTCGATATCTACTATATTACCCTGTGTAGAATTATGGAGTCGGAATAGGTACAGTATACACTAGAATCCACTTCGGCATGTCTGAGATGATGAATGTTCAACTTGACATTTTCCTAGTAAAATATAACTTGTCATTTTATAGGAGATTTGGATATAGAAGTAAGCAAGGGATTGGAGAAGAGTATCAACATGTAACAGATACTTTTATCACATCCCATGTGCATTTTCTAGCTGCCAGTTTTTCCCCCTTGGTATGTTGACAATGATAGTCTTATTCTTCAACTGAATTTTGGTTAATTTTTTCAGTATGAAAAATGTTATGTTCCTC</genome_strand>
        <mrna_strand>ACATTTTGGAGTTTGTAAGAATACTACTGCAGCGAATGCAGCTCCTACAGCAACCAATACTGCTGGAATGTTTTCAGGGTCCGTGCAATTAACAGGCCATGCTTCAACAATCCATTTTTCCACTACCTTATACCTATTTTCATTGTCTTCTGTAATGGTGTTGTTTCTACTATGAGAAGAAAAAGAGAGTTCCACGCAGAAGTTACATGAGTTTCATCCACGGATGCTCGATATCTACTATATTACCCTGTGTAGAATTATGGAGTCGGAATAGGTACAGTATACACTAGAATCCACTTCGGCATGTCTGAGATGATGAATGTTCAACTTGACATTTTCCTAGTAAAATATAACTTGTCATTTTATAGGAGATTTGGATATAGAAGTAAGCAAGGGATTGGAGAAGAGTATCAACATGTAACAGATACTTTTATCACATCCCATGTGCATTTTCTAGCTGCCAGTTTTTCCCCCTTGGTATGTTGACAATGATAGTCTTATTCTTCAACTGAATTTTGGTTAATTTTTTCAGTATGAAAAATGTTATGTTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396095" ref_strand="+" ref_description="SGN-E396095 [TUS-19-E19](-)">
      <seq>atgcagttcctacagcaaccaatactgctggaatgttttcagggtccccccaattaacaggccatgcttcaacaatccatttttccactaccttatacctattttcattgttttctgtaatggtgttgtttctactatgagaagaaaaagagagttccacgcagaagttacatgagtttcatccacggatgctcgatatttactatattaccctgtgtagaattatggagtcggaataggtacagtatacactagaatccacttcggcatgtttgagatgatgaatgttcaacttgacattttcctagtaaaatataacttgtcattttataggagatttggatatagaagtaagcaagggattggagaagagtatcaacatgtaacagatacttttatcacatcccatgtgcattttctagctgccagtttttcccccttggtatgttgacaatgataatggtatttttcaactgaattttggttaattttttcagtaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="51957" stop="53062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52257" g_stop="52761" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="506" polyA_stop="522"/>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E396095" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52257" e_stop="52761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAGCTCCTACAGCAACCAATACTGCTGGAATGTTTTCAGGGTCCGTGCAATTAACAGGCCATGCTTCAACAATCCATTTTTCCACTACCTTATACCTATTTTCATTGTCTTCTGTAATGGTGTTGTTTCTACTATGAGAAGAAAAAGAGAGTTCCACGCAGAAGTTACATGAGTTTCATCCACGGATGCTCGATATCTACTATATTACCCTGTGTAGAATTATGGAGTCGGAATAGGTACAGTATACACTAGAATCCACTTCGGCATGTCTGAGATGATGAATGTTCAACTTGACATTTTCCTAGTAAAATATAACTTGTCATTTTATAGGAGATTTGGATATAGAAGTAAGCAAGGGATTGGAGAAGAGTATCAACATGTAACAGATACTTTTATCACATCCCATGTGCATTTTCTAGCTGCCAGTTTTTCCCCCTTGGTATGTTGACAATGATAGTCTTATTCTTCAACTGAATTTTGGTTAATTTTTTCAGTATGAAAA</genome_strand>
        <mrna_strand>ATGCAGTTCCTACAGCAACCAATACTGCTGGAATGTTTTCAGGGTCCCCCCAATTAACAGGCCATGCTTCAACAATCCATTTTTCCACTACCTTATACCTATTTTCATTGTTTTCTGTAATGGTGTTGTTTCTACTATGAGAAGAAAAAGAGAGTTCCACGCAGAAGTTACATGAGTTTCATCCACGGATGCTCGATATTTACTATATTACCCTGTGTAGAATTATGGAGTCGGAATAGGTACAGTATACACTAGAATCCACTTCGGCATGTTTGAGATGATGAATGTTCAACTTGACATTTTCCTAGTAAAATATAACTTGTCATTTTATAGGAGATTTGGATATAGAAGTAAGCAAGGGATTGGAGAAGAGTATCAACATGTAACAGATACTTTTATCACATCCCATGTGCATTTTCTAGCTGCCAGTTTTTCCCCCTTGGTATGTTGACAATGATAATGGTATTTTTCAACTGAATTTTGGTTAATTTTTTCAGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238657" ref_strand="+" ref_description="SGN-E238657 [cLEL-9-J19](-)">
      <seq>ggcacgagaaccaatactgctggaatgttttcagggtccgtgcaattaacaggccatgcttcaacaatccatttttccactaccttatacctattttcattgtcttctgtaatggtgttgtttctactatgacaagaaaaagagagttccacgcagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="51968" stop="52722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52265" g_stop="52422" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="159" polyA_stop="174"/>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E238657" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>158</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52265" e_stop="52422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTACAGCAACCAATACTGCTGGAATGTTTTCAGGGTCCGTGCAATTAACAGGCCATGCTTCAACAATCCATTTTTCCACTACCTTATACCTATTTTCATTGTCTTCTGTAATGGTGTTGTTTCTACTATGAGAAGAAAAAGAGAGTTCCACGCAGAA</genome_strand>
        <mrna_strand>GGCACGAGAACCAATACTGCTGGAATGTTTTCAGGGTCCGTGCAATTAACAGGCCATGCTTCAACAATCCATTTTTCCACTACCTTATACCTATTTTCATTGTCTTCTGTAATGGTGTTGTTTCTACTATGACAAGAAAAAGAGAGTTCCACGCAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E692071" ref_strand="+" ref_description="SGN-E692071 [LH_Ea07M05]">
      <seq>tgttgtcaaataacggatcgcgggctgtaccaattgtcaactgcaaaatgtgtcagcaatctatcatcactatctttatggggcactactgggatcacagatacaggtgttgttcagctgcatctgaatattggtggtacatttataacagacacgtccttgtttgctattgctggtagctgcccacacttgaagtctattgtgctgtggggctgccgtcatgtaactgagaatgggcttctagctttagtaaataagtgtcgcaaactagagtctatcaatgcatggggcatgagggttaccgtggactgctttgtcggcctactcactattagcccagctctacaaatagaacctaaaggaatgctgcctaatattgctgtcttctgaggagcctttaagttcctgtgtgacctttgtctttgaagggccatccacctgaattgttattgcattatatcttgtgtacagcttgtcaattgtttcattgaccaataatgatttgtttttatttggacattgcctgctgcaggcttctgaaaagatctgctagtaattattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="54430" stop="52646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54131" g_stop="54012" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54011" i_stop="53571" i_length="441">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53570" g_stop="53496" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="195" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53495" i_stop="53322" i_length="174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53321" g_stop="52939" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="572" r_length="377" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E692071" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54131" e_stop="54012"/>
          <exon e_start="53570" e_stop="53496"/>
          <exon e_start="53321" e_stop="52939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTCAAATAACCGATCGCGGGTTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTATGGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAGCTGGTATGTCGTCCTCATTGTTTATCGTGTCTGTGATCGTGATATTAAGTAGGTCTAGTTAGATGTTATTTTAGAGGTTTATGTCTATCGTTATCATGCTTACTTGAAGATATTTTGATAATGACATTTTGAACTTTCACACCTTTAATTTTGTTGCTTTGCATGCATATGTTTTGATTCCCCGAATAAGGAAGATGTTTGTTAGGAAAAAAGGTTGATGGCTAAGGCGCTGGAGCTATCTTGTTACCTCAATCTGTACTTAACACAATTGCTTTTAGAATTGGAAAGAGAATCATATATTGATTAGAGAAGAGAGATTTCTTCACCTGTTTAAATCTGCCTGTACTTTTCGGTGGAATTAGCTGCTTATGTATAGTTCAAGTAGACTATTGCCTCATTTAGTTTTGGGTTTTCTGATAGATCTCCAGAGCTAATTCTCTACAGCATCTGAATATTGGTGGTACATTTATAACAGACACGTCCTTGTTTGCTATTGCTGGTAGCTGCCCACACTTGAAGGTAAGTCTCCGAAAATTCCACATCTTAAGGTCGCATCACCAATTCACTAGTAGGTTCTAACCTCTTTTTTTAATTTTTATGTTTACTTTCTCCATTGTTATAATAAGATATAACACGAAAGTGTTTGATTCACGGGATTTTTAAGATACGAATACTTGTCCATATCTTTTGCAGTCTATTGTGCTGTGGGGCTGCCGTCATGTAACTGAAAATGGGCTTCTAGCTTTAGTAAATAAGTGTCGCAAACTAGAGTCTATCAATGCATGGGGCATGAGGGTTACCGTGGACTGCTTTGTCGGCCTACTCACTATTAGCCCAGCTCTACAAATAGAACCTAAAGGAATGCTGCCTAATATTGCTGTCTTCTGAGGAGCCTTTAAGTTCCTGTGCGTCCTTTGTCTTTGGAAGGGCAATCCACCTGAATTGTTATTGCATTATATCTTGTGTACAGCTTGTCAATTGTTTCATTGACCAATAATGCTTTGTATTTATTTGGACATTGCCTGCTGCAGGGCGTCGAAAAGATCCGATCTGCTAGTAATTATTAAAATTCCATT</genome_strand>
        <mrna_strand>TGTTGTCAAATAACGGATCGCGGGCTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTATGGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTGAATATTGGTGGTACATTTATAACAGACACGTCCTTGTTTGCTATTGCTGGTAGCTGCCCACACTTGAAG..............................................................................................................................................................................TCTATTGTGCTGTGGGGCTGCCGTCATGTAACTGAGAATGGGCTTCTAGCTTTAGTAAATAAGTGTCGCAAACTAGAGTCTATCAATGCATGGGGCATGAGGGTTACCGTGGACTGCTTTGTCGGCCTACTCACTATTAGCCCAGCTCTACAAATAGAACCTAAAGGAATGCTGCCTAATATTGCTGTCTTCTGAGGAGCCTTTAAGTTCCTGTGTGACCTTTGTCTTT-GAAGGGCCATCCACCTGAATTGTTATTGCATTATATCTTGTGTACAGCTTGTCAATTGTTTCATTGACCAATAATGATTTGTTTTTATTTGGACATTGCCTGCTGCA-GGCTTCTGAAA-A---GATCTGCTAGTAATTATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396219" ref_strand="+" ref_description="SGN-E396219 [TUS-24-P14](-)">
      <seq>gagaaaaaatgagtttttttgggcgggaaagtggatgatgattcaacaacttgccttgtgcttcatgcttacagtctcaaggaacttgacatttcgaggagccgttggggttgtcaaataaccgatcgcgggttgtaccaattgtcaactgcaaaatgtgtcagcaatctatcatcactatctttatggggcactactgggatcacagatacaggtgttgttcagctgatctccagagctaattctctacagcatctgaatattggtggtacatttataacagacacgtccttgtttgctattgctggtagctgcccacacttgaagtctattgtgctgtggggctgccgtcatgtaactgaaaatgggcttctagctttagtaaataagtgtcgcaaactagagtctatcaatgcatggggcatgagggttaccgtggactgctttgtcggcctactcactattagcccagctctacaaatagaacctaaaggaatgctgcctaatattgctgtcttctgaggagcctttaagttcctgtgcgtcctttgtctttggaagggcaatccacctgaattgttattgcattatatcttgtgtacagcttgtcaattgtttcattgaccaataatgctttgtatttatttggacattgcctgctgcagggcgtcgaaaagatccgatctgctagtaattattaaaattccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="55319" stop="52641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55019" g_stop="54929" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54928" i_stop="54148" i_length="781">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54147" g_stop="54012" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="228" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54011" i_stop="53595" i_length="417">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.434" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53594" g_stop="53496" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="327" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53495" i_stop="53322" i_length="174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53321" g_stop="52942" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="707" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="708" polyA_stop="717"/>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E396219" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55019" e_stop="54929"/>
          <exon e_start="54147" e_stop="54012"/>
          <exon e_start="53594" e_stop="53496"/>
          <exon e_start="53321" e_stop="52942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAAAATGAGTTTTTCT-GGCTGGAAAGTGGATGATGATTCAACAACTCGCCTTGTGCTTCATGCTTACAGTCTCAAGGAACTTGACATGTATGTATGTCTATATAATTAGTTTTGTACTCTATGCTTGCTACAAGTTAGTTTATTTCGTATACTCTTTTAACTGAAATATAGATGTTTGCAGTACATTTGATGAAACGCTATCTAAAAATGATGGAACTTAAAAGGATTTTGAGGTTGAGAATGCTTATAGTAGTAGTAAACAGAAAATTCGAGCGACTTTCTTGGACTAATTAACTTCAGTAAGACTTTATAGTCATGTTTAGACCATTGATGGTCTTCTTTTCAACTTTTGCAATCAAGAGTAATTAATTGCTCTTTTCATCTATCTTAAGTAAGATGAGCAACACTTCAACTTCTGAAAATCTGGCTAGGTCTAGACTGTGTGGCCGTTAATAGATTCACCACATTGTCTTACCTGTGAGCTGCTCTCTCTTTGATCAGTGATACAATAACCAATAGATCGATGAAGCCATCTAATCGTGCAGAGTTACTAGTATTAAAGAGTATATACATTTTTATTTCTATATGAGATCCTATTTTCTGCAACACTCGATTGATTTATAGCTATTATATTAGTCGTCACATATCAATAAATTGAGTTCCATGCTTTCTTAACCATCCTGAAGTATAATTGGGCGGGGGATATAATCAGATTTACAGGTATTCTAATCTAAAAAGCACCTGCAACCGTTTTGGTTCTTTTTCGTTGTTTCAACTTTAGATGTTTTAGTGTTCAAAAATACAATATAATGATGATTAGGGAGATAACTTGTGTGATGTACTGTTCTGACTTGTTTGCTTTCTCCAGTTCGAGGAGCCGTTGGGGTTGTCAAATAACCGATCGCGGGTTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTATGGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAGCTGGTATGTCGTCCTCATTGTTTATCGTGTCTGTGATCGTGATATTAAGTAGGTCTAGTTAGATGTTATTTTAGAGGTTTATGTCTATCGTTATCATGCTTACTTGAAGATATTTTGATAATGACATTTTGAACTTTCACACCTTTAATTTTGTTGCTTTGCATGCATATGTTTTGATTCCCCGAATAAGGAAGATGTTTGTTAGGAAAAAAGGTTGATGGCTAAGGCGCTGGAGCTATCTTGTTACCTCAATCTGTACTTAACACAATTGCTTTTAGAATTGGAAAGAGAATCATATATTGATTAGAGAAGAGAGATTTCTTCACCTGTTTAAATCTGCCTGTACTTTTCGGTGGAATTAGCTGCTTATGTATAGTTCAAGTAGACTATTGCCTCATTTAGTTTTGGGTTTTCTGATAGATCTCCAGAGCTAATTCTCTACAGCATCTGAATATTGGTGGTACATTTATAACAGACACGTCCTTGTTTGCTATTGCTGGTAGCTGCCCACACTTGAAGGTAAGTCTCCGAAAATTCCACATCTTAAGGTCGCATCACCAATTCACTAGTAGGTTCTAACCTCTTTTTTTAATTTTTATGTTTACTTTCTCCATTGTTATAATAAGATATAACACGAAAGTGTTTGATTCACGGGATTTTTAAGATACGAATACTTGTCCATATCTTTTGCAGTCTATTGTGCTGTGGGGCTGCCGTCATGTAACTGAAAATGGGCTTCTAGCTTTAGTAAATAAGTGTCGCAAACTAGAGTCTATCAATGCATGGGGCATGAGGGTTACCGTGGACTGCTTTGTCGGCCTACTCACTATTAGCCCAGCTCTACAAATAGAACCTAAAGGAATGCTGCCTAATATTGCTGTCTTCTGAGGAGCCTTTAAGTTCCTGTGCGTCCTTTGTCTTTGGAAGGGCAATCCACCTGAATTGTTATTGCATTATATCTTGTGTACAGCTTGTCAATTGTTTCATTGACCAATAATGCTTTGTATTTATTTGGACATTGCCTGCTGCAGGGCGTCGAAAAGATCCGATCTGCTAGTAATTATTAAAATTCC</genome_strand>
        <mrna_strand>GAGAAAAAATGAGTTTTTTTGGGCGGGAAAGTGGATGATGATTCAACAACTTGCCTTGTGCTTCATGCTTACAGTCTCAAGGAACTTGACAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAGGAGCCGTTGGGGTTGTCAAATAACCGATCGCGGGTTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTATGGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCAGAGCTAATTCTCTACAGCATCTGAATATTGGTGGTACATTTATAACAGACACGTCCTTGTTTGCTATTGCTGGTAGCTGCCCACACTTGAAG..............................................................................................................................................................................TCTATTGTGCTGTGGGGCTGCCGTCATGTAACTGAAAATGGGCTTCTAGCTTTAGTAAATAAGTGTCGCAAACTAGAGTCTATCAATGCATGGGGCATGAGGGTTACCGTGGACTGCTTTGTCGGCCTACTCACTATTAGCCCAGCTCTACAAATAGAACCTAAAGGAATGCTGCCTAATATTGCTGTCTTCTGAGGAGCCTTTAAGTTCCTGTGCGTCCTTTGTCTTTGGAAGGGCAATCCACCTGAATTGTTATTGCATTATATCTTGTGTACAGCTTGTCAATTGTTTCATTGACCAATAATGCTTTGTATTTATTTGGACATTGCCTGCTGCAGGGCGTCGAAAAGATCCGATCTGCTAGTAATTATTAAAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392414" ref_strand="+" ref_description="SGN-E392414 [TUS-34-O15](-)">
      <seq>aaaaaatgagtttttctggctggaaagtggatgatgattcaacaactcgccttgtgcttcatgcttacagtctcaaggaacttgacatttcgaggagccgttggggttgtcaaataaccgatcgcgggttgtaccaattgtcaactgcaaaatgtgtcagcaatctatcatcactatctttatggggcactactgggatcacagatacaggtgttgttcagctgatctccagagctaattctctacagcatctgaatattggtggtacatttataacagacacgtccttgtttgctattgctggtagctgcccacacttgaagtctattgtgctgtggggctgccgtcatgtaactgaaaatgggcttctagctttagtaaataagtgtcgcaaactagagtctatcaatgcatggggcatgagggttaccgtggactgctttgtcggcctactcactattagcccagctctacaaatagaacctaaaggaatgctgcctaatattgctgtcttctgaggagcctttaagttcctgtgcgtcctttgtctttggaagggcaatccacctgaattgttattgcattatatcttgtgtacagcttgtcaattgtttcattgaccaataatgctttgtatttatttggacattgcctgctgcagggcgtcgaaaagatccgatctgctagtaattattaaaattccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="55316" stop="52641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55016" g_stop="54929" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54928" i_stop="54148" i_length="781">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54147" g_stop="54012" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="224" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54011" i_stop="53595" i_length="417">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.434" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53594" g_stop="53496" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="323" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53495" i_stop="53322" i_length="174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53321" g_stop="52942" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="703" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="704" polyA_stop="713"/>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E392414" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55016" e_stop="54929"/>
          <exon e_start="54147" e_stop="54012"/>
          <exon e_start="53594" e_stop="53496"/>
          <exon e_start="53321" e_stop="52942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGAGTTTTTCTGGCTGGAAAGTGGATGATGATTCAACAACTCGCCTTGTGCTTCATGCTTACAGTCTCAAGGAACTTGACATGTATGTATGTCTATATAATTAGTTTTGTACTCTATGCTTGCTACAAGTTAGTTTATTTCGTATACTCTTTTAACTGAAATATAGATGTTTGCAGTACATTTGATGAAACGCTATCTAAAAATGATGGAACTTAAAAGGATTTTGAGGTTGAGAATGCTTATAGTAGTAGTAAACAGAAAATTCGAGCGACTTTCTTGGACTAATTAACTTCAGTAAGACTTTATAGTCATGTTTAGACCATTGATGGTCTTCTTTTCAACTTTTGCAATCAAGAGTAATTAATTGCTCTTTTCATCTATCTTAAGTAAGATGAGCAACACTTCAACTTCTGAAAATCTGGCTAGGTCTAGACTGTGTGGCCGTTAATAGATTCACCACATTGTCTTACCTGTGAGCTGCTCTCTCTTTGATCAGTGATACAATAACCAATAGATCGATGAAGCCATCTAATCGTGCAGAGTTACTAGTATTAAAGAGTATATACATTTTTATTTCTATATGAGATCCTATTTTCTGCAACACTCGATTGATTTATAGCTATTATATTAGTCGTCACATATCAATAAATTGAGTTCCATGCTTTCTTAACCATCCTGAAGTATAATTGGGCGGGGGATATAATCAGATTTACAGGTATTCTAATCTAAAAAGCACCTGCAACCGTTTTGGTTCTTTTTCGTTGTTTCAACTTTAGATGTTTTAGTGTTCAAAAATACAATATAATGATGATTAGGGAGATAACTTGTGTGATGTACTGTTCTGACTTGTTTGCTTTCTCCAGTTCGAGGAGCCGTTGGGGTTGTCAAATAACCGATCGCGGGTTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTATGGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAGCTGGTATGTCGTCCTCATTGTTTATCGTGTCTGTGATCGTGATATTAAGTAGGTCTAGTTAGATGTTATTTTAGAGGTTTATGTCTATCGTTATCATGCTTACTTGAAGATATTTTGATAATGACATTTTGAACTTTCACACCTTTAATTTTGTTGCTTTGCATGCATATGTTTTGATTCCCCGAATAAGGAAGATGTTTGTTAGGAAAAAAGGTTGATGGCTAAGGCGCTGGAGCTATCTTGTTACCTCAATCTGTACTTAACACAATTGCTTTTAGAATTGGAAAGAGAATCATATATTGATTAGAGAAGAGAGATTTCTTCACCTGTTTAAATCTGCCTGTACTTTTCGGTGGAATTAGCTGCTTATGTATAGTTCAAGTAGACTATTGCCTCATTTAGTTTTGGGTTTTCTGATAGATCTCCAGAGCTAATTCTCTACAGCATCTGAATATTGGTGGTACATTTATAACAGACACGTCCTTGTTTGCTATTGCTGGTAGCTGCCCACACTTGAAGGTAAGTCTCCGAAAATTCCACATCTTAAGGTCGCATCACCAATTCACTAGTAGGTTCTAACCTCTTTTTTTAATTTTTATGTTTACTTTCTCCATTGTTATAATAAGATATAACACGAAAGTGTTTGATTCACGGGATTTTTAAGATACGAATACTTGTCCATATCTTTTGCAGTCTATTGTGCTGTGGGGCTGCCGTCATGTAACTGAAAATGGGCTTCTAGCTTTAGTAAATAAGTGTCGCAAACTAGAGTCTATCAATGCATGGGGCATGAGGGTTACCGTGGACTGCTTTGTCGGCCTACTCACTATTAGCCCAGCTCTACAAATAGAACCTAAAGGAATGCTGCCTAATATTGCTGTCTTCTGAGGAGCCTTTAAGTTCCTGTGCGTCCTTTGTCTTTGGAAGGGCAATCCACCTGAATTGTTATTGCATTATATCTTGTGTACAGCTTGTCAATTGTTTCATTGACCAATAATGCTTTGTATTTATTTGGACATTGCCTGCTGCAGGGCGTCGAAAAGATCCGATCTGCTAGTAATTATTAAAATTCC</genome_strand>
        <mrna_strand>AAAAAATGAGTTTTTCTGGCTGGAAAGTGGATGATGATTCAACAACTCGCCTTGTGCTTCATGCTTACAGTCTCAAGGAACTTGACAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAGGAGCCGTTGGGGTTGTCAAATAACCGATCGCGGGTTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTATGGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCAGAGCTAATTCTCTACAGCATCTGAATATTGGTGGTACATTTATAACAGACACGTCCTTGTTTGCTATTGCTGGTAGCTGCCCACACTTGAAG..............................................................................................................................................................................TCTATTGTGCTGTGGGGCTGCCGTCATGTAACTGAAAATGGGCTTCTAGCTTTAGTAAATAAGTGTCGCAAACTAGAGTCTATCAATGCATGGGGCATGAGGGTTACCGTGGACTGCTTTGTCGGCCTACTCACTATTAGCCCAGCTCTACAAATAGAACCTAAAGGAATGCTGCCTAATATTGCTGTCTTCTGAGGAGCCTTTAAGTTCCTGTGCGTCCTTTGTCTTTGGAAGGGCAATCCACCTGAATTGTTATTGCATTATATCTTGTGTACAGCTTGTCAATTGTTTCATTGACCAATAATGCTTTGTATTTATTTGGACATTGCCTGCTGCAGGGCGTCGAAAAGATCCGATCTGCTAGTAATTATTAAAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E695911" ref_strand="+" ref_description="SGN-E695911 [LH_Ea07M05](-)">
      <seq>ggttgtcaaataacggatcgcgggctgtaccaattgtcaactgcaaaatgtgtcagcaatctatcatcactatctttatggggcactactgggatcacagatacaggtgttgttcagctgcatctgaatattggtggtacatttataacagacacgtccttgtttgctattgctggtagctgcccacacttgaagtctattgtgctgtggggctgccgtcatgtaactgagaatgggcttctagctttagtaaataagtgtcgcaaactagagtctatcaatgcatggggcatgagggttaccgtggactgctttgtcggcctactcactattagcccagctctacaaatagaacctaaaggaatgctgcctaatattgctgtcttctgaggagcctttaagttcctgtgtgacctttgtctttgaagggccatccacctgaattgttattgcattatatcttgtgtacagcttgtcaattgtttcaatgaccaataatgatttgtttttatttggacattgcctgtagggggcttctgaaaagatctgctagtaattattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="54431" stop="52646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54131" g_stop="54012" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54011" i_stop="53571" i_length="441">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53570" g_stop="53496" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="195" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53495" i_stop="53322" i_length="174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53321" g_stop="52959" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="552" r_length="357" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="562" polyA_stop="577"/>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E695911" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54131" e_stop="54012"/>
          <exon e_start="53570" e_stop="53496"/>
          <exon e_start="53321" e_stop="52959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTCAAATAACCGATCGCGGGTTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTATGGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAGCTGGTATGTCGTCCTCATTGTTTATCGTGTCTGTGATCGTGATATTAAGTAGGTCTAGTTAGATGTTATTTTAGAGGTTTATGTCTATCGTTATCATGCTTACTTGAAGATATTTTGATAATGACATTTTGAACTTTCACACCTTTAATTTTGTTGCTTTGCATGCATATGTTTTGATTCCCCGAATAAGGAAGATGTTTGTTAGGAAAAAAGGTTGATGGCTAAGGCGCTGGAGCTATCTTGTTACCTCAATCTGTACTTAACACAATTGCTTTTAGAATTGGAAAGAGAATCATATATTGATTAGAGAAGAGAGATTTCTTCACCTGTTTAAATCTGCCTGTACTTTTCGGTGGAATTAGCTGCTTATGTATAGTTCAAGTAGACTATTGCCTCATTTAGTTTTGGGTTTTCTGATAGATCTCCAGAGCTAATTCTCTACAGCATCTGAATATTGGTGGTACATTTATAACAGACACGTCCTTGTTTGCTATTGCTGGTAGCTGCCCACACTTGAAGGTAAGTCTCCGAAAATTCCACATCTTAAGGTCGCATCACCAATTCACTAGTAGGTTCTAACCTCTTTTTTTAATTTTTATGTTTACTTTCTCCATTGTTATAATAAGATATAACACGAAAGTGTTTGATTCACGGGATTTTTAAGATACGAATACTTGTCCATATCTTTTGCAGTCTATTGTGCTGTGGGGCTGCCGTCATGTAACTGAAAATGGGCTTCTAGCTTTAGTAAATAAGTGTCGCAAACTAGAGTCTATCAATGCATGGGGCATGAGGGTTACCGTGGACTGCTTTGTCGGCCTACTCACTATTAGCCCAGCTCTACAAATAGAACCTAAAGGAATGCTGCCTAATATTGCTGTCTTCTGAGGAGCCTTTAAGTTCCTGTGCGTCCTTTGTCTTTGGAAGGGCAATCCACCTGAATTGTTATTGCATTATATCTTGTGTACAGCTTGTCAATTGTTTCATTGACCAATAATGCTTTGTATTTATTTGGACATTGCCTGCTGCAGGGCGTCGAAAAGATCCGATCTGCTA</genome_strand>
        <mrna_strand>GGTTGTCAAATAACGGATCGCGGGCTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTATGGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTGAATATTGGTGGTACATTTATAACAGACACGTCCTTGTTTGCTATTGCTGGTAGCTGCCCACACTTGAAG..............................................................................................................................................................................TCTATTGTGCTGTGGGGCTGCCGTCATGTAACTGAGAATGGGCTTCTAGCTTTAGTAAATAAGTGTCGCAAACTAGAGTCTATCAATGCATGGGGCATGAGGGTTACCGTGGACTGCTTTGTCGGCCTACTCACTATTAGCCCAGCTCTACAAATAGAACCTAAAGGAATGCTGCCTAATATTGCTGTCTTCTGAGGAGCCTTTAAGTTCCTGTGTGACCTTTGTCTTT-GAAGGGCCATCCACCTGAATTGTTATTGCATTATATCTTGTGTACAGCTTGTCAATTGTTTCAATGACCAATAATGATTTGTTTTTATTTGGACATTGCCTG-TAGGGGGCTTCTGAAA-A---GATCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358592" ref_strand="+" ref_description="SGN-E358592 [cLHT-22-J20]">
      <seq>gggatcacagatacaggtgttgttcagctgatctccagagctaattctctacagcatctcaatattggtggtacatttataacagacacgtccttgtttgctattgctggtagctgcccacacttgaagtctattgtgctgtggggctgccgtcatgtaactgagaatgggcttctagctttagtaaataagtgtcgcaaactagagtctatcaatgcatggggcatgagggttaccgtggactgctttgtcggcctactcactattagcccaactctacaaatagaacctaaaggaatgctgcctaacattgctgtcttctgaggagccttttaagttcctgcgtgaccttcgtctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="54341" stop="52792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54041" g_stop="54012" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54011" i_stop="53595" i_length="417">
            <donor d_prob="0.949" d_score="0.00"/>
            <acceptor a_prob="0.434" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53594" g_stop="53496" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="129" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53495" i_stop="53322" i_length="174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53321" g_stop="53092" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="360" r_length="231" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E358592" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54041" e_stop="54012"/>
          <exon e_start="53594" e_stop="53496"/>
          <exon e_start="53321" e_stop="53092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATCACAGATACAGGTGTTGTTCAGCTGGTATGTCGTCCTCATTGTTTATCGTGTCTGTGATCGTGATATTAAGTAGGTCTAGTTAGATGTTATTTTAGAGGTTTATGTCTATCGTTATCATGCTTACTTGAAGATATTTTGATAATGACATTTTGAACTTTCACACCTTTAATTTTGTTGCTTTGCATGCATATGTTTTGATTCCCCGAATAAGGAAGATGTTTGTTAGGAAAAAAGGTTGATGGCTAAGGCGCTGGAGCTATCTTGTTACCTCAATCTGTACTTAACACAATTGCTTTTAGAATTGGAAAGAGAATCATATATTGATTAGAGAAGAGAGATTTCTTCACCTGTTTAAATCTGCCTGTACTTTTCGGTGGAATTAGCTGCTTATGTATAGTTCAAGTAGACTATTGCCTCATTTAGTTTTGGGTTTTCTGATAGATCTCCAGAGCTAATTCTCTACAGCATCTGAATATTGGTGGTACATTTATAACAGACACGTCCTTGTTTGCTATTGCTGGTAGCTGCCCACACTTGAAGGTAAGTCTCCGAAAATTCCACATCTTAAGGTCGCATCACCAATTCACTAGTAGGTTCTAACCTCTTTTTTTAATTTTTATGTTTACTTTCTCCATTGTTATAATAAGATATAACACGAAAGTGTTTGATTCACGGGATTTTTAAGATACGAATACTTGTCCATATCTTTTGCAGTCTATTGTGCTGTGGGGCTGCCGTCATGTAACTGAAAATGGGCTTCTAGCTTTAGTAAATAAGTGTCGCAAACTAGAGTCTATCAATGCATGGGGCATGAGGGTTACCGTGGACTGCTTTGTCGGCCTACTCACTATTAGCCCAGCTCTACAAATAGAACCTAAAGGAATGCTGCCTAATATTGCTGTCTTCTGAGGAGCC-TTTAAGTTCCTGTGCGTCCTTTGTCTTTG</genome_strand>
        <mrna_strand>GGGATCACAGATACAGGTGTTGTTCAGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCAGAGCTAATTCTCTACAGCATCTCAATATTGGTGGTACATTTATAACAGACACGTCCTTGTTTGCTATTGCTGGTAGCTGCCCACACTTGAAG..............................................................................................................................................................................TCTATTGTGCTGTGGGGCTGCCGTCATGTAACTGAGAATGGGCTTCTAGCTTTAGTAAATAAGTGTCGCAAACTAGAGTCTATCAATGCATGGGGCATGAGGGTTACCGTGGACTGCTTTGTCGGCCTACTCACTATTAGCCCAACTCTACAAATAGAACCTAAAGGAATGCTGCCTAACATTGCTGTCTTCTGAGGAGCCTTTTAAGTTCCTGCGTGACCTTCGTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392198" ref_strand="+" ref_description="SGN-E392198 [TUS-34-O15]">
      <seq>cctacttgtacgatttttatgaatagttttcctctgttccacagcttacataaaccacgactcctttccctttttcttcttgttgaaattttcatcaaatttgttgaattttgaagttaattcgtttggttaataatttgattcttccatcatgaaaagaaaggggatggaagaattagatgatcaaaacaggccgattgatagactcccctttgacctcttggctcacatttttgctatgcttacttgtttcaaggatttggctcagacaagtgctgtgtgcaggaaatggagacagggggtgaaggaatcgttagctagaagagaaaaaatgagtttttctggctggaaagtggatgatgattcaacaactcgccttgtgcttcatgcttacagtctcaaggaacttgacatttcgaggagccgttggggttgtcaaataaccgatcgcgggttgtaccaattgtcaactgcaaaatgtgtcagcaatctatcatcactatctttatggggcactactgggatcacagatacaggtgttgttcagctgatctccagagctaattctctacagcatctgaatattggtggtacatttataacagacacgtccttgtttgctattgctggtagctgcccacacttgaagtctattgtgctgtggggctgccgtcatgtaactgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="55727" stop="52985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55427" g_stop="55161" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55160" i_stop="55076" i_length="85">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55075" g_stop="54929" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="414" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54928" i_stop="54148" i_length="781">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54147" g_stop="54012" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="550" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54011" i_stop="53595" i_length="417">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.434" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53594" g_stop="53496" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="649" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53495" i_stop="53322" i_length="174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53321" g_stop="53285" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="686" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E392198" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55427" e_stop="55161"/>
          <exon e_start="55075" e_stop="54929"/>
          <exon e_start="54147" e_stop="54012"/>
          <exon e_start="53594" e_stop="53496"/>
          <exon e_start="53321" e_stop="53285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTACTTGTACGATTTTTATGAATAGTTTTCCTCTGTTCCACAGCTTACATAAACCACGACTCCTTTCCCTTTTTCTTCTTGTTGAAATTTTCATCAAATTTGTTGAATTTTGAAGTTAATTCGTTTGGTTAATAATTTGATTCTTCCATCATGAAAAGAAAGGGGATGGAAGAATTAGATGATCAAAACAGGCCGATTGATAGACTCCCCTTTGACCTCTTGGCTCACATTTTTGCTATGCTTACTTGTTTCAAGGATTTGGCTCAGTTAATTTCAGCTTCTTTTTCTTTTTCCCCTTTTTGTTTAATTTGTTCTTTGTGTTTATTTGTCGTTTTTTGGTACTTGTTGTAGGACAAGTGCTGTGTGCAGGAAATGGAGACAGGGGGTGAAGGAATCGTTAGCTAGAAGAGAAAAAATGAGTTTTTCTGGCTGGAAAGTGGATGATGATTCAACAACTCGCCTTGTGCTTCATGCTTACAGTCTCAAGGAACTTGACATGTATGTATGTCTATATAATTAGTTTTGTACTCTATGCTTGCTACAAGTTAGTTTATTTCGTATACTCTTTTAACTGAAATATAGATGTTTGCAGTACATTTGATGAAACGCTATCTAAAAATGATGGAACTTAAAAGGATTTTGAGGTTGAGAATGCTTATAGTAGTAGTAAACAGAAAATTCGAGCGACTTTCTTGGACTAATTAACTTCAGTAAGACTTTATAGTCATGTTTAGACCATTGATGGTCTTCTTTTCAACTTTTGCAATCAAGAGTAATTAATTGCTCTTTTCATCTATCTTAAGTAAGATGAGCAACACTTCAACTTCTGAAAATCTGGCTAGGTCTAGACTGTGTGGCCGTTAATAGATTCACCACATTGTCTTACCTGTGAGCTGCTCTCTCTTTGATCAGTGATACAATAACCAATAGATCGATGAAGCCATCTAATCGTGCAGAGTTACTAGTATTAAAGAGTATATACATTTTTATTTCTATATGAGATCCTATTTTCTGCAACACTCGATTGATTTATAGCTATTATATTAGTCGTCACATATCAATAAATTGAGTTCCATGCTTTCTTAACCATCCTGAAGTATAATTGGGCGGGGGATATAATCAGATTTACAGGTATTCTAATCTAAAAAGCACCTGCAACCGTTTTGGTTCTTTTTCGTTGTTTCAACTTTAGATGTTTTAGTGTTCAAAAATACAATATAATGATGATTAGGGAGATAACTTGTGTGATGTACTGTTCTGACTTGTTTGCTTTCTCCAGTTCGAGGAGCCGTTGGGGTTGTCAAATAACCGATCGCGGGTTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTATGGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAGCTGGTATGTCGTCCTCATTGTTTATCGTGTCTGTGATCGTGATATTAAGTAGGTCTAGTTAGATGTTATTTTAGAGGTTTATGTCTATCGTTATCATGCTTACTTGAAGATATTTTGATAATGACATTTTGAACTTTCACACCTTTAATTTTGTTGCTTTGCATGCATATGTTTTGATTCCCCGAATAAGGAAGATGTTTGTTAGGAAAAAAGGTTGATGGCTAAGGCGCTGGAGCTATCTTGTTACCTCAATCTGTACTTAACACAATTGCTTTTAGAATTGGAAAGAGAATCATATATTGATTAGAGAAGAGAGATTTCTTCACCTGTTTAAATCTGCCTGTACTTTTCGGTGGAATTAGCTGCTTATGTATAGTTCAAGTAGACTATTGCCTCATTTAGTTTTGGGTTTTCTGATAGATCTCCAGAGCTAATTCTCTACAGCATCTGAATATTGGTGGTACATTTATAACAGACACGTCCTTGTTTGCTATTGCTGGTAGCTGCCCACACTTGAAGGTAAGTCTCCGAAAATTCCACATCTTAAGGTCGCATCACCAATTCACTAGTAGGTTCTAACCTCTTTTTTTAATTTTTATGTTTACTTTCTCCATTGTTATAATAAGATATAACACGAAAGTGTTTGATTCACGGGATTTTTAAGATACGAATACTTGTCCATATCTTTTGCAGTCTATTGTGCTGTGGGGCTGCCGTCATGTAACTGAAA</genome_strand>
        <mrna_strand>CCTACTTGTACGATTTTTATGAATAGTTTTCCTCTGTTCCACAGCTTACATAAACCACGACTCCTTTCCCTTTTTCTTCTTGTTGAAATTTTCATCAAATTTGTTGAATTTTGAAGTTAATTCGTTTGGTTAATAATTTGATTCTTCCATCATGAAAAGAAAGGGGATGGAAGAATTAGATGATCAAAACAGGCCGATTGATAGACTCCCCTTTGACCTCTTGGCTCACATTTTTGCTATGCTTACTTGTTTCAAGGATTTGGCTCA.....................................................................................GACAAGTGCTGTGTGCAGGAAATGGAGACAGGGGGTGAAGGAATCGTTAGCTAGAAGAGAAAAAATGAGTTTTTCTGGCTGGAAAGTGGATGATGATTCAACAACTCGCCTTGTGCTTCATGCTTACAGTCTCAAGGAACTTGACAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAGGAGCCGTTGGGGTTGTCAAATAACCGATCGCGGGTTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTATGGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCAGAGCTAATTCTCTACAGCATCTGAATATTGGTGGTACATTTATAACAGACACGTCCTTGTTTGCTATTGCTGGTAGCTGCCCACACTTGAAG..............................................................................................................................................................................TCTATTGTGCTGTGGGGCTGCCGTCATGTAACTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E398568" ref_strand="+" ref_description="SGN-E398568 [TUS-24-P14]">
      <seq>cctacttgtacgatttttatgaatagttttcctctgttccacagcttacataaaccacgactcctttccctttttcttcttgttgaaattttcatcaaatttgttgaattttgaagttaattcgtttggttaataatttgattcttccatcatgaaaagaaaggggatggaagaattagatgatcaaaacaggccgattgatagactcccctttgacctcttggctcacatttttgctatgcttacttgtttcaaggatttggctcagacaagtgctgtgtgcaggaaatggagacagggggtgaaggaatcgttagctagaagagaaaaaatgagtttttctggctggaaagtggatgatgattcaacaactcgccttgtgcttcatgcttacagtctcaaggaacttgacatttcgaggagccgttggggttgtcaaataaccgatcgcgggttgtaccaattgtcaactgcaaaatgtgtcagcaatctatcatcactatctttatggggcactactgggatcacagatacaggtgttgttcagctgatctccagagctaattctctacagcatctgaatattggtggtacatttataac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="55727" stop="53242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55427" g_stop="55161" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55160" i_stop="55076" i_length="85">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55075" g_stop="54929" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="414" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54928" i_stop="54148" i_length="781">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54147" g_stop="54012" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="550" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54011" i_stop="53595" i_length="417">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.434" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53594" g_stop="53542" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="603" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E398568" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55427" e_stop="55161"/>
          <exon e_start="55075" e_stop="54929"/>
          <exon e_start="54147" e_stop="54012"/>
          <exon e_start="53594" e_stop="53542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTACTTGTACGATTTTTATGAATAGTTTTCCTCTGTTCCACAGCTTACATAAACCACGACTCCTTTCCCTTTTTCTTCTTGTTGAAATTTTCATCAAATTTGTTGAATTTTGAAGTTAATTCGTTTGGTTAATAATTTGATTCTTCCATCATGAAAAGAAAGGGGATGGAAGAATTAGATGATCAAAACAGGCCGATTGATAGACTCCCCTTTGACCTCTTGGCTCACATTTTTGCTATGCTTACTTGTTTCAAGGATTTGGCTCAGTTAATTTCAGCTTCTTTTTCTTTTTCCCCTTTTTGTTTAATTTGTTCTTTGTGTTTATTTGTCGTTTTTTGGTACTTGTTGTAGGACAAGTGCTGTGTGCAGGAAATGGAGACAGGGGGTGAAGGAATCGTTAGCTAGAAGAGAAAAAATGAGTTTTTCTGGCTGGAAAGTGGATGATGATTCAACAACTCGCCTTGTGCTTCATGCTTACAGTCTCAAGGAACTTGACATGTATGTATGTCTATATAATTAGTTTTGTACTCTATGCTTGCTACAAGTTAGTTTATTTCGTATACTCTTTTAACTGAAATATAGATGTTTGCAGTACATTTGATGAAACGCTATCTAAAAATGATGGAACTTAAAAGGATTTTGAGGTTGAGAATGCTTATAGTAGTAGTAAACAGAAAATTCGAGCGACTTTCTTGGACTAATTAACTTCAGTAAGACTTTATAGTCATGTTTAGACCATTGATGGTCTTCTTTTCAACTTTTGCAATCAAGAGTAATTAATTGCTCTTTTCATCTATCTTAAGTAAGATGAGCAACACTTCAACTTCTGAAAATCTGGCTAGGTCTAGACTGTGTGGCCGTTAATAGATTCACCACATTGTCTTACCTGTGAGCTGCTCTCTCTTTGATCAGTGATACAATAACCAATAGATCGATGAAGCCATCTAATCGTGCAGAGTTACTAGTATTAAAGAGTATATACATTTTTATTTCTATATGAGATCCTATTTTCTGCAACACTCGATTGATTTATAGCTATTATATTAGTCGTCACATATCAATAAATTGAGTTCCATGCTTTCTTAACCATCCTGAAGTATAATTGGGCGGGGGATATAATCAGATTTACAGGTATTCTAATCTAAAAAGCACCTGCAACCGTTTTGGTTCTTTTTCGTTGTTTCAACTTTAGATGTTTTAGTGTTCAAAAATACAATATAATGATGATTAGGGAGATAACTTGTGTGATGTACTGTTCTGACTTGTTTGCTTTCTCCAGTTCGAGGAGCCGTTGGGGTTGTCAAATAACCGATCGCGGGTTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTATGGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAGCTGGTATGTCGTCCTCATTGTTTATCGTGTCTGTGATCGTGATATTAAGTAGGTCTAGTTAGATGTTATTTTAGAGGTTTATGTCTATCGTTATCATGCTTACTTGAAGATATTTTGATAATGACATTTTGAACTTTCACACCTTTAATTTTGTTGCTTTGCATGCATATGTTTTGATTCCCCGAATAAGGAAGATGTTTGTTAGGAAAAAAGGTTGATGGCTAAGGCGCTGGAGCTATCTTGTTACCTCAATCTGTACTTAACACAATTGCTTTTAGAATTGGAAAGAGAATCATATATTGATTAGAGAAGAGAGATTTCTTCACCTGTTTAAATCTGCCTGTACTTTTCGGTGGAATTAGCTGCTTATGTATAGTTCAAGTAGACTATTGCCTCATTTAGTTTTGGGTTTTCTGATAGATCTCCAGAGCTAATTCTCTACAGCATCTGAATATTGGTGGTACATTTATAAC</genome_strand>
        <mrna_strand>CCTACTTGTACGATTTTTATGAATAGTTTTCCTCTGTTCCACAGCTTACATAAACCACGACTCCTTTCCCTTTTTCTTCTTGTTGAAATTTTCATCAAATTTGTTGAATTTTGAAGTTAATTCGTTTGGTTAATAATTTGATTCTTCCATCATGAAAAGAAAGGGGATGGAAGAATTAGATGATCAAAACAGGCCGATTGATAGACTCCCCTTTGACCTCTTGGCTCACATTTTTGCTATGCTTACTTGTTTCAAGGATTTGGCTCA.....................................................................................GACAAGTGCTGTGTGCAGGAAATGGAGACAGGGGGTGAAGGAATCGTTAGCTAGAAGAGAAAAAATGAGTTTTTCTGGCTGGAAAGTGGATGATGATTCAACAACTCGCCTTGTGCTTCATGCTTACAGTCTCAAGGAACTTGACAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAGGAGCCGTTGGGGTTGTCAAATAACCGATCGCGGGTTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTATGGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCAGAGCTAATTCTCTACAGCATCTGAATATTGGTGGTACATTTATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E251236" ref_strand="+" ref_description="SGN-E251236 [cLEG-10-K9]">
      <seq>tttgattcttccatcatgaaaggaaaggggatggaagaattagatgatcaaaacatgccgattgatagactcccctttgacctcttggctcacatttttgctatgcttacttgtttcaaggatttggctcagacaagtgctgtgtgcaggaaatggagacagggggtgaaggaatcgttagctagaagagaaaaaatgagtttttctggctggaaagtggatgatgattcaacaactcgccttgtgcttcatgcttacagtctcaaggaacttgacatttcgaggagccgttggggttgtcaaataaccgatcgcgggttgtaccaattgtcaactgcaaaatgtgtcagcaatctatcatcactatctttatgggggcactactgggatcacagatacaggtgttgttcaactggtatgtcgtcctcattgtttatcgtgtctgcgatcgggatattaagtaggtctagttagatgttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="55591" stop="53644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55291" g_stop="55161" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55160" i_stop="55076" i_length="85">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55075" g_stop="54929" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="278" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54928" i_stop="54148" i_length="781">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54147" g_stop="53944" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="483" r_length="205" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E251236" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55291" e_stop="55161"/>
          <exon e_start="55075" e_stop="54929"/>
          <exon e_start="54147" e_stop="53944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTCTTCCATCATGAAAAGAAAGGGGATGGAAGAATTAGATGATCAAAACAGGCCGATTGATAGACTCCCCTTTGACCTCTTGGCTCACATTTTTGCTATGCTTACTTGTTTCAAGGATTTGGCTCAGTTAATTTCAGCTTCTTTTTCTTTTTCCCCTTTTTGTTTAATTTGTTCTTTGTGTTTATTTGTCGTTTTTTGGTACTTGTTGTAGGACAAGTGCTGTGTGCAGGAAATGGAGACAGGGGGTGAAGGAATCGTTAGCTAGAAGAGAAAAAATGAGTTTTTCTGGCTGGAAAGTGGATGATGATTCAACAACTCGCCTTGTGCTTCATGCTTACAGTCTCAAGGAACTTGACATGTATGTATGTCTATATAATTAGTTTTGTACTCTATGCTTGCTACAAGTTAGTTTATTTCGTATACTCTTTTAACTGAAATATAGATGTTTGCAGTACATTTGATGAAACGCTATCTAAAAATGATGGAACTTAAAAGGATTTTGAGGTTGAGAATGCTTATAGTAGTAGTAAACAGAAAATTCGAGCGACTTTCTTGGACTAATTAACTTCAGTAAGACTTTATAGTCATGTTTAGACCATTGATGGTCTTCTTTTCAACTTTTGCAATCAAGAGTAATTAATTGCTCTTTTCATCTATCTTAAGTAAGATGAGCAACACTTCAACTTCTGAAAATCTGGCTAGGTCTAGACTGTGTGGCCGTTAATAGATTCACCACATTGTCTTACCTGTGAGCTGCTCTCTCTTTGATCAGTGATACAATAACCAATAGATCGATGAAGCCATCTAATCGTGCAGAGTTACTAGTATTAAAGAGTATATACATTTTTATTTCTATATGAGATCCTATTTTCTGCAACACTCGATTGATTTATAGCTATTATATTAGTCGTCACATATCAATAAATTGAGTTCCATGCTTTCTTAACCATCCTGAAGTATAATTGGGCGGGGGATATAATCAGATTTACAGGTATTCTAATCTAAAAAGCACCTGCAACCGTTTTGGTTCTTTTTCGTTGTTTCAACTTTAGATGTTTTAGTGTTCAAAAATACAATATAATGATGATTAGGGAGATAACTTGTGTGATGTACTGTTCTGACTTGTTTGCTTTCTCCAGTTCGAGGAGCCGTTGGGGTTGTCAAATAACCGATCGCGGGTTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTAT-GGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAGCTGGTATGTCGTCCTCATTGTTTATCGTGTCTGTGATCGTGATATTAAGTAGGTCTAGTTAGATGTTATTT</genome_strand>
        <mrna_strand>TTTGATTCTTCCATCATGAAAGGAAAGGGGATGGAAGAATTAGATGATCAAAACATGCCGATTGATAGACTCCCCTTTGACCTCTTGGCTCACATTTTTGCTATGCTTACTTGTTTCAAGGATTTGGCTCA.....................................................................................GACAAGTGCTGTGTGCAGGAAATGGAGACAGGGGGTGAAGGAATCGTTAGCTAGAAGAGAAAAAATGAGTTTTTCTGGCTGGAAAGTGGATGATGATTCAACAACTCGCCTTGTGCTTCATGCTTACAGTCTCAAGGAACTTGACAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAGGAGCCGTTGGGGTTGTCAAATAACCGATCGCGGGTTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTATGGGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAACTGGTATGTCGTCCTCATTGTTTATCGTGTCTGCGATCGGGATATTAAGTAGGTCTAGTTAGATGTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247333" ref_strand="+" ref_description="SGN-E247333 [cLEF-46-D16]">
      <seq>ctacttgtacgatttttatgaatagttttcctctgttccacagcttacataaaccacgactcctttccctttttcttcttgttgaaattttcatcaaatttgttgaattttgaagttaattcgtttggttaataatttgattcttccatcatgaaaagaaaggggatggaagaattagatgatcaaaacaggccgattgatagactcccctttgacctcttggctcacatttttgctatgcttacttgtttcaaggatttggctcagacaagtgctgtgtgcaggaaatggagacagggggtgaaggaatcgttagctagaagaaaaaaaatgagtttttctggctggaaagtggatgatgattcaacaactcgccttgtgcttcatgcttacagtctcaaggaacttgacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="55726" stop="54629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55426" g_stop="55161" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55160" i_stop="55076" i_length="85">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55075" g_stop="54929" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="413" r_length="147" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E247333" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55426" e_stop="55161"/>
          <exon e_start="55075" e_stop="54929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTGTACGATTTTTATGAATAGTTTTCCTCTGTTCCACAGCTTACATAAACCACGACTCCTTTCCCTTTTTCTTCTTGTTGAAATTTTCATCAAATTTGTTGAATTTTGAAGTTAATTCGTTTGGTTAATAATTTGATTCTTCCATCATGAAAAGAAAGGGGATGGAAGAATTAGATGATCAAAACAGGCCGATTGATAGACTCCCCTTTGACCTCTTGGCTCACATTTTTGCTATGCTTACTTGTTTCAAGGATTTGGCTCAGTTAATTTCAGCTTCTTTTTCTTTTTCCCCTTTTTGTTTAATTTGTTCTTTGTGTTTATTTGTCGTTTTTTGGTACTTGTTGTAGGACAAGTGCTGTGTGCAGGAAATGGAGACAGGGGGTGAAGGAATCGTTAGCTAGAAGAGAAAAAATGAGTTTTTCTGGCTGGAAAGTGGATGATGATTCAACAACTCGCCTTGTGCTTCATGCTTACAGTCTCAAGGAACTTGACAT</genome_strand>
        <mrna_strand>CTACTTGTACGATTTTTATGAATAGTTTTCCTCTGTTCCACAGCTTACATAAACCACGACTCCTTTCCCTTTTTCTTCTTGTTGAAATTTTCATCAAATTTGTTGAATTTTGAAGTTAATTCGTTTGGTTAATAATTTGATTCTTCCATCATGAAAAGAAAGGGGATGGAAGAATTAGATGATCAAAACAGGCCGATTGATAGACTCCCCTTTGACCTCTTGGCTCACATTTTTGCTATGCTTACTTGTTTCAAGGATTTGGCTCA.....................................................................................GACAAGTGCTGTGTGCAGGAAATGGAGACAGGGGGTGAAGGAATCGTTAGCTAGAAGAAAAAAAATGAGTTTTTCTGGCTGGAAAGTGGATGATGATTCAACAACTCGCCTTGTGCTTCATGCTTACAGTCTCAAGGAACTTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="56030" stop="56950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56330" g_stop="56651" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56330" e_stop="56651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAAATATACATTTTTGCATGTGTATATACAACTTTCTCTCGCTTTACACAATACAGAAACAGAA-TTATATACTTCTGTGTATACAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="56030" stop="56935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56330" g_stop="56623" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56330" e_stop="56623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAAATATACATTTTTGCATGTGTATATACAACTTTCTCTCGCTTTACACAATACAGAAACAGAATT</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="56031" stop="57076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56331" g_stop="56776" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56331" e_stop="56776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAAATATACATTTTTGCATGTGTATATACAACTTTCTCTCGCTTTACACAATACAGAAACAGAA-TTATATACTTCTGTGTATACAGCGAGAGAGGCGAGCGAGAATGAAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACG-CTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATC-AACCCTAGCTATTCCATTTAATTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E695347" ref_strand="+" ref_description="SGN-E695347 [LH_Ea06E17](-)">
      <seq>gcaatgacgagcaatggagaaaacagtagaccccaagaagttggacacaagagtctcttgcaaagcgatgccctatatcagtatattcttgaaacaagcgtgtacccgagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacctctgctgatgaagggcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatatcaatcgggataactatgagattggtcttccagtaattgaaaaggctggactagctcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagatggcaaatatcatggatcatacgatttcatatttgtggacgctgacaaagataattacttgaactatcacaagagattaatcgatttggttaagattggtggagtaattgggtatgacaacaccctatggaacggatcagtggtggcaccacctgatgcacccctaaggaaatacgttaggtattatagagattttgtattggaactcaacaaggccttggctgctgattccagaattgaaatctgtcagcttcctgttggtgatggtatcactttgtgtcgccgcatcagttaaaatatcaaggcattattttttaaatacccctatttcgaatcttttcattattttatgctttatttttatttctgtcttttctggtaaagggttgttgtctatgtacttattgattaattttacaaaggattttcataaataagaacaaaagttcaagtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="59097" stop="57266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58797" g_stop="58717" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58716" i_stop="58624" i_length="93">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58623" g_stop="58544" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="161" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58543" i_stop="58459" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58458" g_stop="58314" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="306" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58239" g_stop="58108" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="438" r_length="132" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58107" i_stop="58025" i_length="83">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58024" g_stop="57557" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="906" r_length="468" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E695347" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58797" e_stop="58717"/>
          <exon e_start="58623" e_stop="58544"/>
          <exon e_start="58458" e_stop="58314"/>
          <exon e_start="58239" e_stop="58108"/>
          <exon e_start="58024" e_stop="57557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAGGTAACCAAATTAAACCCCACATTTTAATTCCTATTGTCATACAAGAAATTAATATGCAAAACCTGTGTTGATCTTAATAAATTGTTTGAACAGTACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTAAAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATCAAGGCATTATTTTTGAAATTTCCCCTATTTCGAAT-TTTTCATTATTTTACGCTTTATTTTTAATTCTGTCTTTTCTGGTAAAAAATTGTTGTCTATGTACCTATTGATTAATTTTACAATGTATTTTCATAAATAAGAACAAAAGTTCAAGTAAATTAAGTTTCAAGG</genome_strand>
        <mrna_strand>GCAATGACGAGCAATGGAGAAAACAGTAGACCCCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG.............................................................................................TATATTCTTGAAACAAGCGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG.....................................................................................GAACCTTATGACCACCTCTGCTGATGAAGGGCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATCAATCGGGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGACTAGCTCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAT...................................................................................GGCAAATATCATGGATCATACGATTTCATATTTGTGGACGCTGACAAAGATAATTACTTGAACTATCACAAGAGATTAATCGATTTGGTTAAGATTGGTGGAGTAATTGGGTATGACAACACCCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTAAGGAAATACGTTAGGTATTATAGAGATTTTGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATCAAGGCATTATTTTTTAAA-TACCCCTATTTCGAATCTTTTCATTATTTTATGCTTTATTTTTATTTCTGTCTTTTCTGGTAAAGGGTTGTTGTCTATGTACTTATTGATTAATTTTACAAAGGATTTTCATAAATAAGAACAAAAGTTCAAGTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E538242" ref_strand="+" ref_description="SGN-E538242 [TUS-57-E23](-)">
      <seq>caaagcgatgccctatatcagtacattcttgaaacaagtgtgtacctgagagagcctgaagccatgaaagagctaagagagattcctgcaaaacacccttggaaccttatgaccacctctgctgatgaaggtcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcacaagagattaatcgacttggttaaggttggtggagtaattgggtatgacaatactctatggaacggatcagtggtggcaccacctgatgcaccccttagaaaatacgttaggtattatagggatttcgtattggaactcaacaaggccttggctgctgattccagaattgaaatctgtcagcttcctgttggtgatggtatcactttgtgtcgccgcatcagttaaaatatcaaggcattatttttgaaatttcccctatttcgaatttttcattattttacgctttatttttaattctgtcttttctggtaaaaaattgttgtctatgtacctattgattaattttacaatgtattttcataaataagaacaaaagttcaagtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="59037" stop="57266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58737" g_stop="58717" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58716" i_stop="58624" i_length="93">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58623" g_stop="58544" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="101" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58543" i_stop="58459" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58458" g_stop="58314" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="246" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58239" g_stop="58108" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="378" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58107" i_stop="58025" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58024" g_stop="57571" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="832" r_length="454" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="833" polyA_stop="849"/>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E538242" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58737" e_stop="58717"/>
          <exon e_start="58623" e_stop="58544"/>
          <exon e_start="58458" e_stop="58314"/>
          <exon e_start="58239" e_stop="58108"/>
          <exon e_start="58024" e_stop="57571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCGATGCCCTATATCAGGTAACCAAATTAAACCCCACATTTTAATTCCTATTGTCATACAAGAAATTAATATGCAAAACCTGTGTTGATCTTAATAAATTGTTTGAACAGTACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTAAAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATCAAGGCATTATTTTTGAAATTTCCCCTATTTCGAATTTTTCATTATTTTACGCTTTATTTTTAATTCTGTCTTTTCTGGTAAAAAATTGTTGTCTATGTACCTATTGATTAATTTTACAATGTATTTTCATAAATAAGAACAAAAGTTCAAGTAA</genome_strand>
        <mrna_strand>CAAAGCGATGCCCTATATCAG.............................................................................................TACATTCTTGAAACAAGTGTGTACCTGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTCCTGCAAAACACCCTTG.....................................................................................GAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATCAAGGCATTATTTTTGAAATTTCCCCTATTTCGAATTTTTCATTATTTTACGCTTTATTTTTAATTCTGTCTTTTCTGGTAAAAAATTGTTGTCTATGTACCTATTGATTAATTTTACAATGTATTTTCATAAATAAGAACAAAAGTTCAAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377708" ref_strand="+" ref_description="SGN-E377708 [TUS-20-I14]">
      <seq>tcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcacaagagattaatcgacttggttaaggttggtggagtaattgggtatgacaatactctatggaacggatcagtggtggcaccacctgatgcaccccttagaaaatacgttaggtattatagggatttcgtattggaactcaacaaggccttggctgctgattccagaattgaaatctgtcagcttcctgttggtgatggtatcactttgtgtcgccgcatcagttaaaatatcaaggcattatttttgaaatttcccctatttcgaatttttcattattttacgctttatttttaattctgtcttttctggtaaaaaattgttgtctatgtacctattgattaattttacaatgtattttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="58708" stop="57296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58408" g_stop="58314" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58239" g_stop="58108" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="227" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58107" i_stop="58025" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58024" g_stop="57596" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="656" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E377708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58408" e_stop="58314"/>
          <exon e_start="58239" e_stop="58108"/>
          <exon e_start="58024" e_stop="57596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTAAAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATCAAGGCATTATTTTTGAAATTTCCCCTATTTCGAATTTTTCATTATTTTACGCTTTATTTTTAATTCTGTCTTTTCTGGTAAAAAATTGTTGTCTATGTACCTATTGATTAATTTTACAATGTATTTTCA</genome_strand>
        <mrna_strand>TCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATCAAGGCATTATTTTTGAAATTTCCCCTATTTCGAATTTTTCATTATTTTACGCTTTATTTTTAATTCTGTCTTTTCTGGTAAAAAATTGTTGTCTATGTACCTATTGATTAATTTTACAATGTATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233004" ref_strand="+" ref_description="SGN-E233004 [cLED-6-N9]">
      <seq>tcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcacaagagattaatcgacttggttaaggttggtggagtaattgggtatgacaatactctatggaacggatcagtggtggcaccacctgatgcaccccttagaaaatacgttaggtattatagggatttcgtattggaactcaacaaggccttggctgctgattccagaattgaaatctgtcagcttcctgttggtgatggtatcactttgtgtcgccgcatcagttaaaatatcaaggcattatttttgaaatttcccctatttcgaatttttcattattttacgctttatttttaattctgtcttttctggtaaaaaattgttgtctatgtacctattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="58708" stop="57318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58408" g_stop="58314" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58239" g_stop="58108" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="227" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58107" i_stop="58025" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58024" g_stop="57618" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="634" r_length="407" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E233004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58408" e_stop="58314"/>
          <exon e_start="58239" e_stop="58108"/>
          <exon e_start="58024" e_stop="57618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTAAAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATCAAGGCATTATTTTTGAAATTTCCCCTATTTCGAATTTTTCATTATTTTACGCTTTATTTTTAATTCTGTCTTTTCTGGTAAAAAATTGTTGTCTATGTACCTATTGA</genome_strand>
        <mrna_strand>TCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATCAAGGCATTATTTTTGAAATTTCCCCTATTTCGAATTTTTCATTATTTTACGCTTTATTTTTAATTCTGTCTTTTCTGGTAAAAAATTGTTGTCTATGTACCTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242819" ref_strand="+" ref_description="SGN-E242819 [cLED-31-P21]">
      <seq>tcaaactcatcaatgccaaaaactccatggaaattggggtttttactggttactctatgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcacaagagattaatcgacttggttaaggttggtggagtaattgggtatgacaatactctatggaacggatcagtggtggcaccacctgatgcaccccttagaaaatacgttaggtattatagggatttcgtattggaactcaacaaggccttggctgctgattccagaattgaaatctgtcagcttcctggtggggatggtatcactttgtgtcgccgcatcagttaaaatatcaaggcattatttttgaaatttcccctatttcgaatttttcattattttacgctttatttttaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="58708" stop="57358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58408" g_stop="58314" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58239" g_stop="58108" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="227" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58107" i_stop="58025" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58024" g_stop="57658" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="594" r_length="367" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E242819" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58408" e_stop="58314"/>
          <exon e_start="58239" e_stop="58108"/>
          <exon e_start="58024" e_stop="57658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTAAAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATCAAGGCATTATTTTTGAAATTTCCCCTATTTCGAATTTTTCATTATTTTACGCTTTATTTTTAATTCT</genome_strand>
        <mrna_strand>TCAAACTCATCAATGCCAAAAACTCCATGGAAATTGGGGTTTTTACTGGTTACTCTATGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGGTGGGGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATCAAGGCATTATTTTTGAAATTTCCCCTATTTCGAATTTTTCATTATTTTACGCTTTATTTTTAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352305" ref_strand="+" ref_description="SGN-E352305 [cTOS-9-K13]">
      <seq>gaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcacaagagattaatcgacttggttaaggttggtggagtaattgggtatgacaatactctatggaacggatcagtggtggcaccacctgatgcaccccttagaaaatacgttaggtattatagggatttcgtattggaactcaacaaggccttggctgctgattccagaattgaaatctgtcagcttcctgttggtgatggtatcactttgtgtcgccgcatcagttaaaatatcaaggcattattttttgaatttcccctatttcgaanttttcattattttacgctttatttttaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="58679" stop="57360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58379" g_stop="58314" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58239" g_stop="58108" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="198" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58107" i_stop="58025" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58024" g_stop="57660" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="563" r_length="365" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E352305" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58379" e_stop="58314"/>
          <exon e_start="58239" e_stop="58108"/>
          <exon e_start="58024" e_stop="57660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTAAAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATCAAGGCATTATTTTTGAAATTTCCCCTATTTCGAATTTTTCATTATTTTACGCTTTATTTTTAATT</genome_strand>
        <mrna_strand>GAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATCAAGGCATTATTTTTTGAATTTCCCCTATTTCGAANTTTTCATTATTTTACGCTTTATTTTTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691507" ref_strand="+" ref_description="SGN-E691507 [LH_Ea06E17]">
      <seq>ccgttgatatatagttcaaattatatccataagcagttagccctgacgagcaatggagaaaacagtagacaccaagaagttggacacaagagtctcttgcaaagcgatgccctatatcagtatattcttgaaacaagcgtgtacccgagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacctctgctgatgaagggcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatatcaatcgggataactatgagattggtcttccagtaattgaaaaggctggactagctcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagatggcaaatatcatggatcatacgatttcatatttgtggacgctgacaaagataattacttgaactatcacaagagattaatcgatttggttaagattggtggagtaattgggtatgacaacaccctatggaacggatcagtggtggcaccacctgatgcacccctaaggaaatacgttaggtattatagagattttgtattggaactcaacaaggccttggctgctgattccagaattgaaatctgtcagcttcctgttggtgatggtatcactttgtgtcgccgcatcagtttaaatatcaaggcattattttttaaatacccctatttcgaatcttttcattattttatgctttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="59132" stop="57366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58838" g_stop="58717" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58716" i_stop="58624" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58623" g_stop="58544" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="200" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58543" i_stop="58459" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58458" g_stop="58314" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="345" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58239" g_stop="58108" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="477" r_length="132" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58107" i_stop="58025" i_length="83">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58024" g_stop="57666" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="836" r_length="359" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E691507" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58838" e_stop="58717"/>
          <exon e_start="58623" e_stop="58544"/>
          <exon e_start="58458" e_stop="58314"/>
          <exon e_start="58239" e_stop="58108"/>
          <exon e_start="58024" e_stop="57666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAGATATATAGTTTAAAAATATATCCATAAGCAGTTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAGGTAACCAAATTAAACCCCACATTTTAATTCCTATTGTCATACAAGAAATTAATATGCAAAACCTGTGTTGATCTTAATAAATTGTTTGAACAGTACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTAAAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATCAAGGCATTATTTTTGAAATTTCCCCTATTTCGAAT-TTTTCATTATTTTACGCTTTATTT</genome_strand>
        <mrna_strand>CCG-TTGATATATAGTTCAAA-TTATATCCATAAGCAGTTAGCCCTGACGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG.............................................................................................TATATTCTTGAAACAAGCGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG.....................................................................................GAACCTTATGACCACCTCTGCTGATGAAGGGCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATCAATCGGGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGACTAGCTCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAT...................................................................................GGCAAATATCATGGATCATACGATTTCATATTTGTGGACGCTGACAAAGATAATTACTTGAACTATCACAAGAGATTAATCGATTTGGTTAAGATTGGTGGAGTAATTGGGTATGACAACACCCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTAAGGAAATACGTTAGGTATTATAGAGATTTTGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTTAAATATCAAGGCATTATTTTTTAAA-TACCCCTATTTCGAATCTTTTCATTATTTTATGCTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205570" ref_strand="+" ref_description="SGN-E205570 [cLEC-21-C2]">
      <seq>gcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacctctgctgatgaaggtcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcacaagagattaatcgacttggttaaggttggtggagtaattgggtatgacaatactctatggaacggatcagtggtggcaccacctgatgcaccccttagaaaatacgttaggtattatagggatttcgtattggaactcaacaaggccttggctgctgattccagaattgaaatctgtcagcttcctgttggtgatggtatcactttgtgtcgccgcatcagttaaaatatcaaggcattatttttgaaatttcccctatttcgaatttttcattattttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="58891" stop="57375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58591" g_stop="58544" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58543" i_stop="58459" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58458" g_stop="58314" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="193" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58239" g_stop="58108" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="325" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58107" i_stop="58025" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58024" g_stop="57675" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="675" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E205570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58591" e_stop="58544"/>
          <exon e_start="58458" e_stop="58314"/>
          <exon e_start="58239" e_stop="58108"/>
          <exon e_start="58024" e_stop="57675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTAAAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATCAAGGCATTATTTTTGAAATTTCCCCTATTTCGAATTTTTCATTATTTTAC</genome_strand>
        <mrna_strand>GCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG.....................................................................................GAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATCAAGGCATTATTTTTGAAATTTCCCCTATTTCGAATTTTTCATTATTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309815" ref_strand="+" ref_description="SGN-E309815 [cLEZ-10-M3]">
      <seq>atgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacctctgctgatgaaggtcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcacaagagattaatcgacttggttaaggttggtggagtaattgggtatgacaatactctatggaacggatcagtggtggcaccacctgatgcaccccttagaaaatacgttaggtattatagggatttcgtattggaactcaacaaggccttggctgctgattccagaattgaaatctgtcagcttcctgttggtgatggtatcactttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="58881" stop="57447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58581" g_stop="58544" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58543" i_stop="58459" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58458" g_stop="58314" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="183" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58239" g_stop="58108" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="315" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58107" i_stop="58025" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58024" g_stop="57747" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="593" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E309815" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58581" e_stop="58544"/>
          <exon e_start="58458" e_stop="58314"/>
          <exon e_start="58239" e_stop="58108"/>
          <exon e_start="58024" e_stop="57747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTAAAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTG</genome_strand>
        <mrna_strand>ATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG.....................................................................................GAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237664" ref_strand="+" ref_description="SGN-E237664 [cLED-19-G16]">
      <seq>tcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcacaagagattaatcgacttggttaaggttggtggagtaattgggtatgacaatactctatggaacggatcagtggtggcaccacctgatgcaccccttagaaaatacgttaggtattatagggatttcgtattggaactcaacaaggccttggctgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="58708" stop="57498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58408" g_stop="58314" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58239" g_stop="58108" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="227" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58107" i_stop="58025" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58024" g_stop="57798" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="454" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E237664" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58408" e_stop="58314"/>
          <exon e_start="58239" e_stop="58108"/>
          <exon e_start="58024" e_stop="57798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTAAAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGA</genome_strand>
        <mrna_strand>TCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240579" ref_strand="+" ref_description="SGN-E240579 [cLED-21-M2]">
      <seq>atcaatgccaattacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcacaagagattaatcgacttggtttaggttggtggagtaatttggtatgacaatactctatggaacggatcagtggtggcaccacctgatgcaccccttaaaaaatacgttaggtattatagggatttcgtattggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="58700" stop="57520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58400" g_stop="58314" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58239" g_stop="58108" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="219" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58107" i_stop="58025" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58024" g_stop="57820" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="424" r_length="205" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E240579" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58400" e_stop="58314"/>
          <exon e_start="58239" e_stop="58108"/>
          <exon e_start="58024" e_stop="57820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTAAAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAAC</genome_strand>
        <mrna_strand>ATCAATGCCAATTACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTTAGGTTGGTGGAGTAATTTGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAAAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228050" ref_strand="+" ref_description="SGN-E228050 [cLED-2-G6]">
      <seq>tcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggccactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="58708" stop="57653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58408" g_stop="58314" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58239" g_stop="58108" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="227" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58107" i_stop="58025" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58024" g_stop="57953" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="299" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E228050" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58408" e_stop="58314"/>
          <exon e_start="58239" e_stop="58108"/>
          <exon e_start="58024" e_stop="57953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTAAAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAG</genome_strand>
        <mrna_strand>TCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCCACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297171" ref_strand="+" ref_description="SGN-E297171 [cLET-29-G10]">
      <seq>ttttttatctatttcagaaacagcaagatatatagtttaaaaatatatccataagcagttagcaatgatgagcaatggagaaaacagtagacaccaagaagttggacacaagagtctcttgcaaagcgatgccctatatcagtacattcttgaaacaagtgtgtacccgagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacctctgctgatgaaggtcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattgggggttttactggttactctctgctggcaactgctatggctcttcctgatgatggcgagattctagcaatggatattaaccgcgataactatgagattggtctttcagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacgggcaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="59158" stop="57665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58858" g_stop="58717" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58716" i_stop="58624" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58623" g_stop="58544" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="222" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58543" i_stop="58459" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58458" g_stop="58314" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="367" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58239" g_stop="58108" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="499" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58107" i_stop="58025" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58024" g_stop="57965" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="559" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E297171" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58858" e_stop="58717"/>
          <exon e_start="58623" e_stop="58544"/>
          <exon e_start="58458" e_stop="58314"/>
          <exon e_start="58239" e_stop="58108"/>
          <exon e_start="58024" e_stop="57965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTATCTATTTCAGAAACAGCAAGATATATAGTTTAAAAATATATCCATAAGCAGTTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAGGTAACCAAATTAAACCCCACATTTTAATTCCTATTGTCATACAAGAAATTAATATGCAAAACCTGTGTTGATCTTAATAAATTGTTTGAACAGTACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTAAAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTG</genome_strand>
        <mrna_strand>TTTTTTATCTATTTCAGAAACAGCAAGATATATAGTTTAAAAATATATCCATAAGCAGTTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG.............................................................................................TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG.....................................................................................GAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGGTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCGAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTTCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGGCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238199" ref_strand="+" ref_description="SGN-E238199 [cLED-22-M21]">
      <seq>aacagcaagatatatagtttaaaaatatatccataagcagttagcaatgatgagcaatggagaaaacagtagacaccaagaagttggacacaagagtctcttgcaaagcgatgccctatatcagtacattcttgaaacaagtgtgtacccgagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggtaataactcattttctcactaattacttcatccaattcgatacttattgtatgctgatatcttcattttgtggaaaaaaaacaggaaccttatgaccacctctgctgatgaaggtcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="59140" stop="57848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58840" g_stop="58717" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58716" i_stop="58624" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58623" g_stop="58314" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="434" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58239" g_stop="58148" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="526" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E238199" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58840" e_stop="58717"/>
          <exon e_start="58623" e_stop="58314"/>
          <exon e_start="58239" e_stop="58148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGCAAGATATATAGTTTAAAAATATATCCATAAGCAGTTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAGGTAACCAAATTAAACCCCACATTTTAATTCCTATTGTCATACAAGAAATTAATATGCAAAACCTGTGTTGATCTTAATAAATTGTTTGAACAGTACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGA</genome_strand>
        <mrna_strand>AACAGCAAGATATATAGTTTAAAAATATATCCATAAGCAGTTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG.............................................................................................TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267297" ref_strand="+" ref_description="SGN-E267297 [cLEI-17-A5]">
      <seq>cacagcaagatatataggttaaaaatataggcataagcagttagcaatgatgagcaatggagaaaacagtagacaccaagaagttggacacaagagtctcttgcaaagcgatgccctatatcagtacattcttgaaacaagtgtgtacccgagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacctctgctgatgaaggtcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="59139" stop="57849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58840" g_stop="58717" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58716" i_stop="58624" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58623" g_stop="58544" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="204" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58543" i_stop="58459" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58458" g_stop="58314" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="349" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58239" g_stop="58149" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="440" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E267297" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58840" e_stop="58717"/>
          <exon e_start="58623" e_stop="58544"/>
          <exon e_start="58458" e_stop="58314"/>
          <exon e_start="58239" e_stop="58149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGCAAGATATATAGTTTAAAAATATATCCATAAGCAGTTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAGGTAACCAAATTAAACCCCACATTTTAATTCCTATTGTCATACAAGAAATTAATATGCAAAACCTGTGTTGATCTTAATAAATTGTTTGAACAGTACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAG</genome_strand>
        <mrna_strand>CACAGCAAGATATATAGGTTAAAAATATAGGCATAAGCAGTTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG.............................................................................................TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG.....................................................................................GAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297274" ref_strand="+" ref_description="SGN-E297274 [cLET-29-G6]">
      <seq>ttttttatctatttcagaaacagtttgatatatagtttaaaaggatatccataagcggttagcaatgatgagcaatggagaaaacagtagacaccaagaagttggacacaagagtctcttgcaaagcgatgccctatatcagtacattcttgaaacaagtgtgtacccgagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacctttgctgatgaaggtcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="59158" stop="58041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58858" g_stop="58717" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58716" i_stop="58624" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58623" g_stop="58544" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="222" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58543" i_stop="58459" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58458" g_stop="58341" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="340" r_length="118" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E297274" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58858" e_stop="58717"/>
          <exon e_start="58623" e_stop="58544"/>
          <exon e_start="58458" e_stop="58341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTATCTATTTCAGAAACAGCAAGATATATAGTTTAAAAATATATCCATAAGCAGTTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAGGTAACCAAATTAAACCCCACATTTTAATTCCTATTGTCATACAAGAAATTAATATGCAAAACCTGTGTTGATCTTAATAAATTGTTTGAACAGTACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACT</genome_strand>
        <mrna_strand>TTTTTTATCTATTTCAGAAACAGTTTGATATATAGTTTAAAAGGATATCCATAAGCGGTTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG.............................................................................................TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG.....................................................................................GAACCTTATGACCACCTTTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282827" ref_strand="+" ref_description="SGN-E282827 [cLER-15-K8]">
      <seq>atatatccataagcagttagcaatgatgagcaatggagaaaacagtagacaccaagaagttggacacaagagtctcttgcaaagcgatgccctatatcagtacattcttgaaacaagtgtgtacccgagagagcctgaagccatgaaagagctaaaagagattactgcaaaacacccttggaaccttatgaccacctctgctgatgaaggtcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattgggggttttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="59116" stop="58062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58816" g_stop="58717" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58716" i_stop="58624" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58623" g_stop="58544" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="180" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58543" i_stop="58459" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58458" g_stop="58362" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="277" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E282827" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58816" e_stop="58717"/>
          <exon e_start="58623" e_stop="58544"/>
          <exon e_start="58458" e_stop="58362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATCCATAAGCAGTTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAGGTAACCAAATTAAACCCCACATTTTAATTCCTATTGTCATACAAGAAATTAATATGCAAAACCTGTGTTGATCTTAATAAATTGTTTGAACAGTACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACT</genome_strand>
        <mrna_strand>ATATATCCATAAGCAGTTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG.............................................................................................TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAAAGAGATTACTGCAAAACACCCTTG.....................................................................................GAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGGTTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282203" ref_strand="+" ref_description="SGN-E282203 [cLES-4-C13]">
      <seq>ggctactataacaccttatggaacggatcagtagtggcactacctgatgcaccccttagaaaatacgttaggtattatagggatttcgtattggaactcaacaaggccttagctgctgatcccagaattgaaatctgccagcttcccgttggtgatggcattaccctttgccgtcgtatcagttaaaatattcaacatgccacccacaggattcataacaacggggaattttatcattttttaaattctctgttttcagtattcaattgcattgtctatgctgtttatttcacagtgtatattcttataaattaaaaaagaaattcatggtcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="68827" stop="67891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68527" g_stop="68183" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E282203" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68527" e_stop="68183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTACGATAACACCTTATGGAACGGATCAGTAGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTAGCTGCTGATCCCAGAATTGAAATCTGCCAGCTTCCCGTTGGTGATGGCATTACCCTTTGCCGTCGTATCAGTTAAAATATTCAACATGCCACCCACAGGATTCATAACAACGGGGAATTTTATCATTTTTTAAATTCTCTGTTTTCAGTATTCAATTGCATTGTCTATGCTGTTTATTTCACAGTGTATATTCTTATAAATTAAAAAAGAAATTCATGGTCAGATATGTAATGT</genome_strand>
        <mrna_strand>GGCTACTATAACACCTTATGGAACGGATCAGTAGTGGCACTACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTAGCTGCTGATCCCAGAATTGAAATCTGCCAGCTTCCCGTTGGTGATGGCATTACCCTTTGCCGTCGTATCAGTTAAAATATTCAACATGCCACCCACAGGATTCATAACAACGGGGAATTTTATCATTTTTTAAATTCTCTGTTTTCAGTATTCAATTGCATTGTCTATGCTGTTTATTTCACAGTGTATATTCTTATAAATTAAAAAAGAAATTCATGGTCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357786" ref_strand="-" ref_description="SGN-E357786 [cTOS-24-C17]">
      <seq>cagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcacaagagattaattgacttggttaaggttggtggagtaattggctacgataacaccttatggaacggatcagtagtggcaccacctgatgcaccccttagaaaatacgttaggtattatagggatttcgtattggaactcaacaaggccttagctgctgatcccagaattgaaatctgccagcttcccgttggtgatggcattaccctttgccgtcgtatcagttaaaatattcaacatgccacccacaggattcataacaacggggaattttatcattttttaaattctctgttttcagtattcaattgcattgtctatgctgtttatttcacagtgtatattcttataaattaaaaaagaaattcatggtcagaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="69064" stop="67891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68764" g_stop="68719" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68718" i_stop="68636" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68635" g_stop="68194" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="488" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="489" polyA_stop="511"/>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E357786" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357786" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68764" e_stop="68719"/>
          <exon e_start="68635" e_stop="68194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTATAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATTGACTTGGTTAAGGTTGGTGGAGTAATTGGCTACGATAACACCTTATGGAACGGATCAGTAGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTAGCTGCTGATCCCAGAATTGAAATCTGCCAGCTTCCCGTTGGTGATGGCATTACCCTTTGCCGTCGTATCAGTTAAAATATTCAACATGCCACCCACAGGATTCATAACAACGGGGAATTTTATCATTTTTTAAATTCTCTGTTTTCAGTATTCAATTGCATTGTCTATGCTGTTTATTTCACAGTGTATATTCTTATAAATTAAAAAAGAAATTCATGGTCAG</genome_strand>
        <mrna_strand>CAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATTGACTTGGTTAAGGTTGGTGGAGTAATTGGCTACGATAACACCTTATGGAACGGATCAGTAGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTAGCTGCTGATCCCAGAATTGAAATCTGCCAGCTTCCCGTTGGTGATGGCATTACCCTTTGCCGTCGTATCAGTTAAAATATTCAACATGCCACCCACAGGATTCATAACAACGGGGAATTTTATCATTTTTTAAATTCTCTGTTTTCAGTATTCAATTGCATTGTCTATGCTGTTTATTTCACAGTGTATATTCTTATAAATTAAAAAAGAAATTCATGGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212636" ref_strand="+" ref_description="SGN-E212636 [cLEC-73-C21]">
      <seq>agaaacaaaatatagctcttcaataccaacaagcaatggcaagcaatggagaaaatggtagacaccaagaagttggacacaagagtctcttgcaaagcgatgccctatatcagtacattcttgaaacaagtgtgtacccgagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacctctgctgatgaaggtcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcctccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcacaagagattaattgacttggttaaggttggtggagtaattggctacgataacaccttatggaacggatcagtagtggcaccacctgatgcaccccttagaaaatacgttaggtattatagggatttcgtattggaactcaacaaggccttagctgctgatcccagaattgaaatctgccagcttcccgttggtgatggcattaccctttgccgtcgtatcagttaaaatattcaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="69740" stop="68029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69440" g_stop="69328" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69327" i_stop="69235" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69234" g_stop="69155" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="193" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69154" i_stop="69070" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69069" g_stop="68925" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="338" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68924" i_stop="68851" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68850" g_stop="68719" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="470" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68718" i_stop="68636" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68635" g_stop="68329" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="777" r_length="307" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E212636" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69440" e_stop="69328"/>
          <exon e_start="69234" e_stop="69155"/>
          <exon e_start="69069" e_stop="68925"/>
          <exon e_start="68850" e_stop="68719"/>
          <exon e_start="68635" e_stop="68329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACAAAATATAGCTCTTCAATACCAACAAGCAATGGCAAGCAATGGAGAAAATGGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAGGTAACCAAATTAAACCCCACATTTTAATTCCTATTGTCATACAAGAAATTAATATGCAAAACCTGTGTTGATCTTAATAAATTGTTTGAACAGTACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTATAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATTGACTTGGTTAAGGTTGGTGGAGTAATTGGCTACGATAACACCTTATGGAACGGATCAGTAGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTAGCTGCTGATCCCAGAATTGAAATCTGCCAGCTTCCCGTTGGTGATGGCATTACCCTTTGCCGTCGTATCAGTTAAAATATTCAACATG</genome_strand>
        <mrna_strand>AGAAACAAAATATAGCTCTTCAATACCAACAAGCAATGGCAAGCAATGGAGAAAATGGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG.............................................................................................TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG.....................................................................................GAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCCTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATTGACTTGGTTAAGGTTGGTGGAGTAATTGGCTACGATAACACCTTATGGAACGGATCAGTAGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTAGCTGCTGATCCCAGAATTGAAATCTGCCAGCTTCCCGTTGGTGATGGCATTACCCTTTGCCGTCGTATCAGTTAAAATATTCAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214942" ref_strand="+" ref_description="SGN-E214942 [cLEC-78-L23]">
      <seq>tcagaaacaaaatatagctcttcaataccaacaagcaatggcaagcaatggagaaaatggtagacaccaagaagttggacacaagagtctcttgcaaagcgatgccctatatcagtacattcttgaaacaagtgtgtacccgagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacctctgctgatgaaggtcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcacaagagattaattgacttggttaaggttggtggagtaattggctacgataacaccttatggaacggatcagtagtggcaccacctgatgcacccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="69742" stop="68171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69442" g_stop="69328" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69327" i_stop="69235" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69234" g_stop="69155" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="195" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69154" i_stop="69070" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69069" g_stop="68925" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="340" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68924" i_stop="68851" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68850" g_stop="68719" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="472" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68718" i_stop="68636" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68635" g_stop="68471" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="637" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E214942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69442" e_stop="69328"/>
          <exon e_start="69234" e_stop="69155"/>
          <exon e_start="69069" e_stop="68925"/>
          <exon e_start="68850" e_stop="68719"/>
          <exon e_start="68635" e_stop="68471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAACAAAATATAGCTCTTCAATACCAACAAGCAATGGCAAGCAATGGAGAAAATGGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAGGTAACCAAATTAAACCCCACATTTTAATTCCTATTGTCATACAAGAAATTAATATGCAAAACCTGTGTTGATCTTAATAAATTGTTTGAACAGTACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTATAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATTGACTTGGTTAAGGTTGGTGGAGTAATTGGCTACGATAACACCTTATGGAACGGATCAGTAGTGGCACCACCTGATGCACCCCTT</genome_strand>
        <mrna_strand>TCAGAAACAAAATATAGCTCTTCAATACCAACAAGCAATGGCAAGCAATGGAGAAAATGGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG.............................................................................................TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG.....................................................................................GAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATTGACTTGGTTAAGGTTGGTGGAGTAATTGGCTACGATAACACCTTATGGAACGGATCAGTAGTGGCACCACCTGATGCACCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205340" ref_strand="+" ref_description="SGN-E205340 [cLEC-25-N11]">
      <seq>ctaatctacatcagaaacaaaatatagctcttcaataccaacaagcaatggcaagcaatggagaaaatggtagacaccaagaagttggacacaagagtctcttgcaaagcgatgccctatatcagtacattcttgaaacaagtgtgtacccgagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacctctgctgatgaaggtcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcacaagagattaattgacttggttaaggttggtggagtaattggctacgataacaccttatggaacggatcagtagtggcaccacctgatgcacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="69752" stop="68173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69452" g_stop="69328" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69327" i_stop="69235" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69234" g_stop="69155" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="205" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69154" i_stop="69070" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69069" g_stop="68925" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="350" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68924" i_stop="68851" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68850" g_stop="68719" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="482" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68718" i_stop="68636" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68635" g_stop="68473" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="645" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E205340" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69452" e_stop="69328"/>
          <exon e_start="69234" e_stop="69155"/>
          <exon e_start="69069" e_stop="68925"/>
          <exon e_start="68850" e_stop="68719"/>
          <exon e_start="68635" e_stop="68473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATCTACATCAGAAACAAAATATAGCTCTTCAATACCAACAAGCAATGGCAAGCAATGGAGAAAATGGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAGGTAACCAAATTAAACCCCACATTTTAATTCCTATTGTCATACAAGAAATTAATATGCAAAACCTGTGTTGATCTTAATAAATTGTTTGAACAGTACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTATAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATTGACTTGGTTAAGGTTGGTGGAGTAATTGGCTACGATAACACCTTATGGAACGGATCAGTAGTGGCACCACCTGATGCACCCC</genome_strand>
        <mrna_strand>CTAATCTACATCAGAAACAAAATATAGCTCTTCAATACCAACAAGCAATGGCAAGCAATGGAGAAAATGGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG.............................................................................................TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG.....................................................................................GAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATTGACTTGGTTAAGGTTGGTGGAGTAATTGGCTACGATAACACCTTATGGAACGGATCAGTAGTGGCACCACCTGATGCACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242922" ref_strand="+" ref_description="SGN-E242922 [cLED-31-B13]">
      <seq>aaaatatagctcttcaataccaacaagcaatggcaagcaatggagaaaatggtagacaccaagaagttggacacaagagtctcttgcaaagcgatgccctatatcagtacattcttgaaacaagtgtgtacccgagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacctctgctgatgaaggtcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcacaagagattaattgacttggttaaggttggtggagtaattggctacgataacaccttatggaacggatcagtagtggcaccacctgatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="69734" stop="68177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69434" g_stop="69328" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69327" i_stop="69235" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69234" g_stop="69155" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="187" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69154" i_stop="69070" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69069" g_stop="68925" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="332" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68924" i_stop="68851" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68850" g_stop="68719" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="464" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68718" i_stop="68636" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68635" g_stop="68477" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="623" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E242922" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69434" e_stop="69328"/>
          <exon e_start="69234" e_stop="69155"/>
          <exon e_start="69069" e_stop="68925"/>
          <exon e_start="68850" e_stop="68719"/>
          <exon e_start="68635" e_stop="68477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATAGCTCTTCAATACCAACAAGCAATGGCAAGCAATGGAGAAAATGGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAGGTAACCAAATTAAACCCCACATTTTAATTCCTATTGTCATACAAGAAATTAATATGCAAAACCTGTGTTGATCTTAATAAATTGTTTGAACAGTACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTATAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATTGACTTGGTTAAGGTTGGTGGAGTAATTGGCTACGATAACACCTTATGGAACGGATCAGTAGTGGCACCACCTGATGCA</genome_strand>
        <mrna_strand>AAAATATAGCTCTTCAATACCAACAAGCAATGGCAAGCAATGGAGAAAATGGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG.............................................................................................TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG.....................................................................................GAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATTGACTTGGTTAAGGTTGGTGGAGTAATTGGCTACGATAACACCTTATGGAACGGATCAGTAGTGGCACCACCTGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213512" ref_strand="+" ref_description="SGN-E213512 [cLEC-71-E1]">
      <seq>agaaacaaaatatagctcttcaataccaacaagcaatggcaagcaatggagaaaatggtagacaccaagaagttggacacaagagtctcttgcaaagcgatgccctatatcagtacattcttgaaacaagtgtgtacccgagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacctctgctgatgaaggtcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcctccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggcccataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcacaagagattaattgacttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="69740" stop="68247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69440" g_stop="69328" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69327" i_stop="69235" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69234" g_stop="69155" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="193" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69154" i_stop="69070" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69069" g_stop="68925" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="338" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68924" i_stop="68851" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68850" g_stop="68719" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="470" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68718" i_stop="68636" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68635" g_stop="68547" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="559" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E213512" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69440" e_stop="69328"/>
          <exon e_start="69234" e_stop="69155"/>
          <exon e_start="69069" e_stop="68925"/>
          <exon e_start="68850" e_stop="68719"/>
          <exon e_start="68635" e_stop="68547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACAAAATATAGCTCTTCAATACCAACAAGCAATGGCAAGCAATGGAGAAAATGGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAGGTAACCAAATTAAACCCCACATTTTAATTCCTATTGTCATACAAGAAATTAATATGCAAAACCTGTGTTGATCTTAATAAATTGTTTGAACAGTACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTATAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATTGACTTGGT</genome_strand>
        <mrna_strand>AGAAACAAAATATAGCTCTTCAATACCAACAAGCAATGGCAAGCAATGGAGAAAATGGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG.............................................................................................TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG.....................................................................................GAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCCTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCCATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATTGACTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206934" ref_strand="+" ref_description="SGN-E206934 [cLEC-33-I13]">
      <seq>ctaatctacatcagaaacaaaatatagctcttcaataccaacaagcaatggcaagcaatggagaaaatggtagacaccaagaagttggacacaagagtctcttgcaaagcgatgccctatatcagtacattcttgaaacaagtgtgtacccgagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacctctgctgatgaaggtcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcacaagagattaattgacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="69752" stop="68249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69452" g_stop="69328" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69327" i_stop="69235" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69234" g_stop="69155" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="205" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69154" i_stop="69070" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69069" g_stop="68925" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="350" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68924" i_stop="68851" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68850" g_stop="68719" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="482" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68718" i_stop="68636" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68635" g_stop="68549" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="569" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E206934" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69452" e_stop="69328"/>
          <exon e_start="69234" e_stop="69155"/>
          <exon e_start="69069" e_stop="68925"/>
          <exon e_start="68850" e_stop="68719"/>
          <exon e_start="68635" e_stop="68549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATCTACATCAGAAACAAAATATAGCTCTTCAATACCAACAAGCAATGGCAAGCAATGGAGAAAATGGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAGGTAACCAAATTAAACCCCACATTTTAATTCCTATTGTCATACAAGAAATTAATATGCAAAACCTGTGTTGATCTTAATAAATTGTTTGAACAGTACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTATAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATTGACTTG</genome_strand>
        <mrna_strand>CTAATCTACATCAGAAACAAAATATAGCTCTTCAATACCAACAAGCAATGGCAAGCAATGGAGAAAATGGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG.............................................................................................TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG.....................................................................................GAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATTGACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310738" ref_strand="+" ref_description="SGN-E310738 [cLEZ-15-B5]">
      <seq>agaaacaaaatatatctcttcaataccaacaagcaatggcaagcaatggagaaaatggtagacaccaagaagttggacacaagagtctcttgcaaagcgatgccctatatcagtacattcttgaaacaagtgtgtacccgagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacctctgctgatgaaggtcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcacaagagattaattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="69740" stop="68252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69440" g_stop="69328" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69327" i_stop="69235" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69234" g_stop="69155" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="193" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69154" i_stop="69070" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69069" g_stop="68925" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="338" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68924" i_stop="68851" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68850" g_stop="68719" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="470" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68718" i_stop="68636" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68635" g_stop="68552" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="554" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E310738" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69440" e_stop="69328"/>
          <exon e_start="69234" e_stop="69155"/>
          <exon e_start="69069" e_stop="68925"/>
          <exon e_start="68850" e_stop="68719"/>
          <exon e_start="68635" e_stop="68552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACAAAATATAGCTCTTCAATACCAACAAGCAATGGCAAGCAATGGAGAAAATGGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAGGTAACCAAATTAAACCCCACATTTTAATTCCTATTGTCATACAAGAAATTAATATGCAAAACCTGTGTTGATCTTAATAAATTGTTTGAACAGTACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTATAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATTGAC</genome_strand>
        <mrna_strand>AGAAACAAAATATATCTCTTCAATACCAACAAGCAATGGCAAGCAATGGAGAAAATGGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG.............................................................................................TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG.....................................................................................GAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228050" ref_strand="+" ref_description="SGN-E228050 [cLED-2-G6]">
      <seq>tcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggccactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="69319" stop="57653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69019" g_stop="68925" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68924" i_stop="68851" i_length="74">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68850" g_stop="68719" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="227" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68718" i_stop="68636" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68635" g_stop="68564" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="299" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E228050" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69019" e_stop="68925"/>
          <exon e_start="68850" e_stop="68719"/>
          <exon e_start="68635" e_stop="68564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTATAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAG</genome_strand>
        <mrna_strand>TCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCCACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311664" ref_strand="+" ref_description="SGN-E311664 [cLEZ-9-J11]">
      <seq>tcagaaacaaaatatagctcttcaataccaacaagcaatggcaagcaatggagaaaatggtagacaccaagaagttggacacaagagtctcttgcaaagcgatgccctatatcagtacattcttgaaacaagtgtgtacccgagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacctctgctgatgaaggtcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="69742" stop="57656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69442" g_stop="69328" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69327" i_stop="69235" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69234" g_stop="69155" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="195" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69154" i_stop="69070" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69069" g_stop="68925" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="340" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68924" i_stop="68851" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68850" g_stop="68719" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="472" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68718" i_stop="68636" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68635" g_stop="68567" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="541" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E311664" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69442" e_stop="69328"/>
          <exon e_start="69234" e_stop="69155"/>
          <exon e_start="69069" e_stop="68925"/>
          <exon e_start="68850" e_stop="68719"/>
          <exon e_start="68635" e_stop="68567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAACAAAATATAGCTCTTCAATACCAACAAGCAATGGCAAGCAATGGAGAAAATGGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAGGTAACCAAATTAAACCCCACATTTTAATTCCTATTGTCATACAAGAAATTAATATGCAAAACCTGTGTTGATCTTAATAAATTGTTTGAACAGTACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTATAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCAC</genome_strand>
        <mrna_strand>TCAGAAACAAAATATAGCTCTTCAATACCAACAAGCAATGGCAAGCAATGGAGAAAATGGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG.............................................................................................TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG.....................................................................................GAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206723" ref_strand="+" ref_description="SGN-E206723 [cLEC-31-I24]">
      <seq>agaaacaaaatatagctcttcaataccaacaagcaatggcaagcaatggagaaaatggtagacaccaagaagttggacacaagagtctcttgcaaagcgatgccctatatcagtacattcttgaaacaagtgtgtacccgagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacctctgctgatgaaggtcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcctccagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="69740" stop="57890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69440" g_stop="69328" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69327" i_stop="69235" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69234" g_stop="69155" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="193" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69154" i_stop="69070" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69069" g_stop="68925" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="338" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68924" i_stop="68851" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68850" g_stop="68801" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="388" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E206723" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69440" e_stop="69328"/>
          <exon e_start="69234" e_stop="69155"/>
          <exon e_start="69069" e_stop="68925"/>
          <exon e_start="68850" e_stop="68801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACAAAATATAGCTCTTCAATACCAACAAGCAATGGCAAGCAATGGAGAAAATGGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAGGTAACCAAATTAAACCCCACATTTTAATTCCTATTGTCATACAAGAAATTAATATGCAAAACCTGTGTTGATCTTAATAAATTGTTTGAACAGTACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGT</genome_strand>
        <mrna_strand>AGAAACAAAATATAGCTCTTCAATACCAACAAGCAATGGCAAGCAATGGAGAAAATGGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG.............................................................................................TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG.....................................................................................GAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCCTCCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244646" ref_strand="+" ref_description="SGN-E244646 [cLED-38-C17]">
      <seq>gagaactagtctcgattttttttttttttttttttttcaacttgaatttctttctttttttattcatcaaatacattgtgaaataagcatttggtaacatagacaatgcaatcttttgccataatacgaactaaaatgataaaattaaacgaatgagtaaaacaggggatttcaaaaatgataaatcctctatcgtcatgactcatgagttgttgattgccaccaatagtactatacgaatattttaactgatgcgacggcaaagagtgatgccatcaccaacaggaagctggcaaatttcgattctgggatcagcagccaacgccttgttaagttccaatacgaaatccctgtaatacctaacatatttcctgaggggtgcatcaggtggtgcaactactgatccattccatagggtgttgtcatagccaattaatccaccaatcttgaccaagtcgattaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="27098" stop="74450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72699" g_stop="72733" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.600"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72734" i_stop="73716" i_length="983">
            <donor d_prob="0.468" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73717" g_stop="74150" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="467" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E244646" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72699" e_stop="72733"/>
          <exon e_start="73717" e_stop="74150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAAATATTGCTCGATTTGATTTATGTAGCGATGTTCGATTATGCCTGAATCTTTTTATTTTAACAAAAAAAAAGAACTTTTGACGCAAATCAAAATTTAAACGTAAAACTAATAATTTTCTGTCTTAAATATACGCTTAGATTTCTGTAGCTATAAAAACCTGTAACTGAGGATACAAAAAGTTTGAAATCAAAGGTTTACATAAATTAACGAGAGCTCGTTTGGTCATATATTTCTCAAATAATATTTGGAGAAAAATTTAGTAAATAGTGTTTGTCCATACACTTTATTAGGTAAATATTTTTAACAAATAATTCAAATTTTCAAATACTAATTTTTTCTAGTATTTGAATCAAATCTCATTATTTAGTATCTTTGAAAAATTGAAATTTTACCCCAATTTTTTTTCTTTTTACAAAAGCACCATCTATAGTTGTTCTTTACGTTGTATAACATAATTTTTTGCATTAATTTCAAAGCACTGATGAAATATATATGGTGAATGTTAAATGATGATATGTTTATTAATAAAAATGATGAACAATCGACTCAAGACAATAAAGTAATGTGTTTTGTCTACTTCACGATGTATAAAATGATGCTTGTTGCACTCACTTCAAATTACCACATTGCTCTAGCGTCATGGAAACTATTTGTTATTATTATAACAAAGATCCAATTGACTTGTAATACAAACTTACGGTTAGTTTTGATATTTTTAAAACTTATGGATATAAATCATATTTTCTAAAAAAGTAAAATATATTTCTCAAATACTATGACCAAACACATGATGAAATTTCATTCAAATTTTTATCCAAATAATATTTGTCAAAAGTATCTGAAAATCCATGATCAAACGCTAGCAAAGAGAGAGTAGTTAGAATAATTAGGTTCACACTATCTAACAATGTAAAATACAAGTAGTTAAAAAAACTGTACTTGGAATTCAAAGATGAACAGAAAATAAGCATGACATTGCCCCATTGACATATGACGTTTGTGTACATTTGATCATTCAACTTGAATTTCTTTCTTTTTTTATTCATCAAATACATTGTGAAATAAGCATTTGGTAACATAGACAATGCAATCTTTTGCCATAATACGAACTAAAATGATAAAATTAAACGAATGAGTAAAACAGGGGATTTCAAAAATGATAAATCCTCTATCGTCATGACTCATGAGTTGTTGATTGCCACCAATAGTACTATACGAATATTTTAACTGATGCGACGGCAAAGAGTGATGCCATCACCAACAGGAAGCTGGCAAATTTCGATTCTGGGATCAGCAGCCAACGCCTTGTTAAGTTCCAATACGAAATCCCTGTAATACCTAACATATTTCCTGAGGGGTGCATCAGGTGGTGCAACTACTGATCCATTCCATAGGGTGTTGTCATAGCCAATTAATCCACCAATCTTGACCAAGTCGATTAATCTC</genome_strand>
        <mrna_strand>GAGAAC-TAGT-CTCGATTTTTTTTTTTTTTTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCAACTTGAATTTCTTTCTTTTTTTATTCATCAAATACATTGTGAAATAAGCATTTGGTAACATAGACAATGCAATCTTTTGCCATAATACGAACTAAAATGATAAAATTAAACGAATGAGTAAAACAGGGGATTTCAAAAATGATAAATCCTCTATCGTCATGACTCATGAGTTGTTGATTGCCACCAATAGTACTATACGAATATTTTAACTGATGCGACGGCAAAGAGTGATGCCATCACCAACAGGAAGCTGGCAAATTTCGATTCTGGGATCAGCAGCCAACGCCTTGTTAAGTTCCAATACGAAATCCCTGTAATACCTAACATATTTCCTGAGGGGTGCATCAGGTGGTGCAACTACTGATCCATTCCATAGGGTGTTGTCATAGCCAATTAATCCACCAATCTTGACCAAGTCGATTAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283615" ref_strand="+" ref_description="SGN-E283615 [cLES-1-I19](-)">
      <seq>ttggaacttaacaaggcgttggctgctgatcccagaatcgaaatttgccagcttcctgttggtgatggcatcactctttgccgtcgcatcagttaaaatattcgtatagtactattggtggcaatcaacaactcatgagtcatgacgatagaggatttatcatttttgaaatcccctgttttactcattcgtttaattttatcattttagttcgtattatggcaaaagattgcattgtctatgttaccaaatgcttatttcacaatgtatttgatgaataaaaaaagaaagaaattcaagttgaatgatcaaatgtacacaaacgtcatatgtcaatggggcaatgtcatgcttattttctgttcatctttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="74323" stop="73350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74023" g_stop="73644" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E283615" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74023" e_stop="73644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAACTTAACAAGGCGTTGGCTGCTGATCCCAGAATCGAAATTTGCCAGCTTCCTGTTGGTGATGGCATCACTCTTTGCCGTCGCATCAGTTAAAATATTCGTATAGTACTATTGGTGGCAATCAACAACTCATGAGTCATGACGATAGAGGATTTATCATTTTTGAAATCCCCTGTTTTACTCATTCGTTTAATTTTATCATTTTAGTTCGTATTATGGCAAAAGATTGCATTGTCTATGTTACCAAATGCTTATTTCACAATGTATTTGATGAATAAAAAAAGAAAGAAATTCAAGTTGAATGATCAAATGTACACAAACGTCATATGTCAATGGGGCAATGTCATGCTTATTTTCTGTTCATCTTTGAATTCCAA</genome_strand>
        <mrna_strand>TTGGAACTTAACAAGGCGTTGGCTGCTGATCCCAGAATCGAAATTTGCCAGCTTCCTGTTGGTGATGGCATCACTCTTTGCCGTCGCATCAGTTAAAATATTCGTATAGTACTATTGGTGGCAATCAACAACTCATGAGTCATGACGATAGAGGATTTATCATTTTTGAAATCCCCTGTTTTACTCATTCGTTTAATTTTATCATTTTAGTTCGTATTATGGCAAAAGATTGCATTGTCTATGTTACCAAATGCTTATTTCACAATGTATTTGATGAATAAAAAAAGAAAGAAATTCAAGTTGAATGATCAAATGTACACAAACGTCATATGTCAATGGGGCAATGTCATGCTTATTTTCTGTTCATCTTTGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283614" ref_strand="+" ref_description="SGN-E283614 [cLES-1-I19]">
      <seq>tggaacttaacaaggcgttggctgctgatcccagaatcgaaatttgccagcttcctgttggtgatggcatcactctttgccgtcgcatcagttaaaatattcgtatagtactattggtggcaatcaacaactcatgagtcatgacgatagaggatttatcatttttgaaatcccctgttttactcattcgtttaattttatcattttagttcgtattatggcaaaagattgcattgtctatgttaccaaatgcttatttcacaatgtatttgatgaataaaaaaagaaagaaattcaagttgaatgatcaaatgtacacaaacgtcatatgtcaatggggcaatgtcatgcttattttctgttcatctttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="74322" stop="73350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74022" g_stop="73644" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E283614" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74022" e_stop="73644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACTTAACAAGGCGTTGGCTGCTGATCCCAGAATCGAAATTTGCCAGCTTCCTGTTGGTGATGGCATCACTCTTTGCCGTCGCATCAGTTAAAATATTCGTATAGTACTATTGGTGGCAATCAACAACTCATGAGTCATGACGATAGAGGATTTATCATTTTTGAAATCCCCTGTTTTACTCATTCGTTTAATTTTATCATTTTAGTTCGTATTATGGCAAAAGATTGCATTGTCTATGTTACCAAATGCTTATTTCACAATGTATTTGATGAATAAAAAAAGAAAGAAATTCAAGTTGAATGATCAAATGTACACAAACGTCATATGTCAATGGGGCAATGTCATGCTTATTTTCTGTTCATCTTTGAATTCCAA</genome_strand>
        <mrna_strand>TGGAACTTAACAAGGCGTTGGCTGCTGATCCCAGAATCGAAATTTGCCAGCTTCCTGTTGGTGATGGCATCACTCTTTGCCGTCGCATCAGTTAAAATATTCGTATAGTACTATTGGTGGCAATCAACAACTCATGAGTCATGACGATAGAGGATTTATCATTTTTGAAATCCCCTGTTTTACTCATTCGTTTAATTTTATCATTTTAGTTCGTATTATGGCAAAAGATTGCATTGTCTATGTTACCAAATGCTTATTTCACAATGTATTTGATGAATAAAAAAAGAAAGAAATTCAAGTTGAATGATCAAATGTACACAAACGTCATATGTCAATGGGGCAATGTCATGCTTATTTTCTGTTCATCTTTGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717286" ref_strand="+" ref_description="SGN-E717286 [FB19DA09]">
      <seq>tgcaaaacaccctcggaaccttatgaccacttctgctgacgaagggcagttcttgaatatgcttctcaaactcatcaatgccaaaaacacaatggaaattggggtttttactggttactctctgcttgctactgccatggctcttcctgatgatggcaagattctagccatggatatcaaccgcgataactatgagattggacttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcactacctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaattacttgaactatcacaagagattaatcgacttggtcaagattggtggattaattggctatgacaacaccctatggaatggatcagtagttgcaccacctgatgcacccctcaggaaatatgttaggtattacagggatttcgtattggaacttaacaaggcgttggctgctgatcccagaatcaaaatttgccagcttcctgttggtgatggcatcactctttgccgtcgcatcagttaaaatattcgtatagtactattggtggcaatcaacaactcatgagtcatgacgatagaggatttatcatttttgaaatcccctgttttactcattcgtttaattttatcattttagttcgtattatggcaaaagattgcattgtctatgttaccaaatgcttatttcacaatgtatttgatgaataaaaaaagaaagaaattcaagttgaatgatcaaatgtacacaaacgtcatatgtcaatggggcaatgtcatgcttattttctgttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="74963" stop="73358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74768" g_stop="74754" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74753" i_stop="74663" i_length="91">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74662" g_stop="74518" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="160" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74517" i_stop="74442" i_length="76">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74441" g_stop="74310" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="292" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74309" i_stop="74222" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74221" g_stop="73663" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="851" r_length="559" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="855" polyA_stop="866"/>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E717286" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74768" e_stop="74754"/>
          <exon e_start="74662" e_stop="74518"/>
          <exon e_start="74441" e_stop="74310"/>
          <exon e_start="74221" e_stop="73663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAAACACCCTTGGTAAATAACTCATTTTCTCACTAATTACCTCATCCAATTGGATTGGTAGCTGGAACTAAGTATAAAAATTTTCATTTGGTGGAAAAAACAGGAACCTTATGACCACTTCTGCTGACGAAGGGCAGTTCTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACAATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTTGCTACTGCCATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTTTTTACTAACAAATGATAATTGCAACTTCATTATAAATCCTACTAATTTGCTACAATTGATTCAGATTCTAGCCATGGATATCAACCGCGATAACTATGAGATTGGACTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTACCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTATAACAACAAATAAATAAACTGATAACTTGTCTATGATGGTTAATGTGTTTCGAATAATTTTCTTTATAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAATTACTTGAACTATCACAAGAGATTAATCGACTTGGTCAAGATTGGTGGATTAATTGGCTATGACAACACCCTATGGAATGGATCAGTAGTTGCACCACCTGATGCACCCCTCAGGAAATATGTTAGGTATTACAGGGATTTCGTATTGGAACTTAACAAGGCGTTGGCTGCTGATCCCAGAATCGAAATTTGCCAGCTTCCTGTTGGTGATGGCATCACTCTTTGCCGTCGCATCAGTTAAAATATTCGTATAGTACTATTGGTGGCAATCAACAACTCATGAGTCATGACGATAGAGGATTTATCATTTTTGAAATCCCCTGTTTTACTCATTCGTTTAATTTTATCATTTTAGTTCGTATTATGGCAAAAGATTGCATTGTCTATGTTACCAAATGCTTATTTCACAATGTATTTGATGAATAAAAAAAGAAAGAAATTCAAGTTGAATGATCAAATGTACACAAACGTCATATGTCAATGGGGCAATGTCATGCTTATTTTCT</genome_strand>
        <mrna_strand>TGCAAAACACCCTCG...........................................................................................GAACCTTATGACCACTTCTGCTGACGAAGGGCAGTTCTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACAATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTTGCTACTGCCATGGCTCTTCCTGATGATGGCAAG............................................................................ATTCTAGCCATGGATATCAACCGCGATAACTATGAGATTGGACTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTACCTGTTCTTGACCAAATGATTGAAGAC........................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAATTACTTGAACTATCACAAGAGATTAATCGACTTGGTCAAGATTGGTGGATTAATTGGCTATGACAACACCCTATGGAATGGATCAGTAGTTGCACCACCTGATGCACCCCTCAGGAAATATGTTAGGTATTACAGGGATTTCGTATTGGAACTTAACAAGGCGTTGGCTGCTGATCCCAGAATCAAAATTTGCCAGCTTCCTGTTGGTGATGGCATCACTCTTTGCCGTCGCATCAGTTAAAATATTCGTATAGTACTATTGGTGGCAATCAACAACTCATGAGTCATGACGATAGAGGATTTATCATTTTTGAAATCCCCTGTTTTACTCATTCGTTTAATTTTATCATTTTAGTTCGTATTATGGCAAAAGATTGCATTGTCTATGTTACCAAATGCTTATTTCACAATGTATTTGATGAATAAAAAAAGAAAGAAATTCAAGTTGAATGATCAAATGTACACAAACGTCATATGTCAATGGGGCAATGTCATGCTTATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335900" ref_strand="+" ref_description="SGN-E335900 [cTOE-6-N20]">
      <seq>tcatgagtcatgacgatagaggatttatcatttttgaaatcccctgttttactcattcgtttaattttatcattttagttcgtattatggcaaaagattgcattgtctatgttaccaaatgcttatttcacaatgtatttgatgaataaaaaaagaaagaaattcaagttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="74191" stop="73411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73891" g_stop="73708" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E335900" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>184</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73891" e_stop="73708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGAGTCATGACGATAGAGGATTTATCATTTTTGAAATCCCCTGTTTTACTCATTCGTTTAATTTTATCATTTTAGTTCGTATTATGGCAAAAGATTGCATTGTCTATGTTACCAAATGCTTATTTCACAATGTATTTGATGAATAAAAAAAGAAAGAAATTCAAGTTGAATGATCAAATGT</genome_strand>
        <mrna_strand>TCATGAGTCATGACGATAGAGGATTTATCATTTTTGAAATCCCCTGTTTTACTCATTCGTTTAATTTTATCATTTTAGTTCGTATTATGGCAAAAGATTGCATTGTCTATGTTACCAAATGCTTATTTCACAATGTATTTGATGAATAAAAAAAGAAAGAAATTCAAGTTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541404" ref_strand="+" ref_description="SGN-E541404 [TUS-62-C22](-)">
      <seq>catcaatgcaaaaaacacaatggaaattgggtttttactggttactctctgcttgctactgccatggctcttcntgatgatggcaagattctagccatggatatcaaccgcgataactatgagattggacttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcactacctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaattacttgaactatcacaagagattaatcgacttggtcaagattggtggattaattggctatgacaacaccctatggaatggatcagtagttgcaccacctgatgcacccctcaggaaatatgttaggtattacagggatttcgtattggaacttaacaaggcgttggctgctgatcccagaatcgaaatttgccagcttcctgttggtgatggcatcactctttgccgtcgcatcagttaaaatattcgtatagtactattggtggcaatcaacaactcatgagtcatgacgatagaggatttatcatttttgaaatcccctgttttactcattcgtttaattttatcattttagttcgtattatggcaaaagattgcattgtctatgttaccaaatgcttatttcacaatgtatttgatgaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="74905" stop="73434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74605" g_stop="74518" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74517" i_stop="74442" i_length="76">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74441" g_stop="74310" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="219" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74309" i_stop="74222" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74221" g_stop="73735" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="706" r_length="487" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E541404" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74605" e_stop="74518"/>
          <exon e_start="74441" e_stop="74310"/>
          <exon e_start="74221" e_stop="73735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAATGCCAAAAACACAATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTTGCTACTGCCATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTTTTTACTAACAAATGATAATTGCAACTTCATTATAAATCCTACTAATTTGCTACAATTGATTCAGATTCTAGCCATGGATATCAACCGCGATAACTATGAGATTGGACTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTACCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTATAACAACAAATAAATAAACTGATAACTTGTCTATGATGGTTAATGTGTTTCGAATAATTTTCTTTATAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAATTACTTGAACTATCACAAGAGATTAATCGACTTGGTCAAGATTGGTGGATTAATTGGCTATGACAACACCCTATGGAATGGATCAGTAGTTGCACCACCTGATGCACCCCTCAGGAAATATGTTAGGTATTACAGGGATTTCGTATTGGAACTTAACAAGGCGTTGGCTGCTGATCCCAGAATCGAAATTTGCCAGCTTCCTGTTGGTGATGGCATCACTCTTTGCCGTCGCATCAGTTAAAATATTCGTATAGTACTATTGGTGGCAATCAACAACTCATGAGTCATGACGATAGAGGATTTATCATTTTTGAAATCCCCTGTTTTACTCATTCGTTTAATTTTATCATTTTAGTTCGTATTATGGCAAAAGATTGCATTGTCTATGTTACCAAATGCTTATTTCACAATGTATTTGATGAATAAAAAAAGAA</genome_strand>
        <mrna_strand>CATCAATGCAAAAAACACAATGGAAATT-GGGTTTTTACTGGTTACTCTCTGCTTGCTACTGCCATGGCTCTTCNTGATGATGGCAAG............................................................................ATTCTAGCCATGGATATCAACCGCGATAACTATGAGATTGGACTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTACCTGTTCTTGACCAAATGATTGAAGAC........................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAATTACTTGAACTATCACAAGAGATTAATCGACTTGGTCAAGATTGGTGGATTAATTGGCTATGACAACACCCTATGGAATGGATCAGTAGTTGCACCACCTGATGCACCCCTCAGGAAATATGTTAGGTATTACAGGGATTTCGTATTGGAACTTAACAAGGCGTTGGCTGCTGATCCCAGAATCGAAATTTGCCAGCTTCCTGTTGGTGATGGCATCACTCTTTGCCGTCGCATCAGTTAAAATATTCGTATAGTACTATTGGTGGCAATCAACAACTCATGAGTCATGACGATAGAGGATTTATCATTTTTGAAATCCCCTGTTTTACTCATTCGTTTAATTTTATCATTTTAGTTCGTATTATGGCAAAAGATTGCATTGTCTATGTTACCAAATGCTTATTTCACAATGTATTTGATGAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703880" ref_strand="+" ref_description="SGN-E703880 [FA22CH09]">
      <seq>cttactattatctgtttcagagtcaaaaaagcaatggcaaccaacggagaaaatggaagacatcaagaagttggacacaagagtctattgcaaagtgatgccctttatcagtatattcttgaaaccagtgtgtacccaagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacttctgctgacgaagggcagttcttgaatatgcttctcaaactcatcaatgccaaaaacacaatggaaattggggtttttactggttactctctgcttgctactgccatggctcttcctgatgatggcaagattctagccatggatatcaaccgcgataactatgagattggacttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcactacctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaattacttgaactatcacaagagattaatcgacttggtcaagattggtggattaattggctatgacaacaccctatggaatggatcagtagttgcaccacctgatgcacccctcaggaaatatgttaggtattacagggatttcgtattggaacttaacaaggcgttggctgctgatcccagaatcgaaatttgccagcttcctgttggtgatggcatcactctttgccgtcgcatcagttaaaatattcgtatagtactattggtggcaatcaacaactcatgagtcatgacgatagaggatttatcatttttgaaatcccctgttttactcattcgtttaattttatcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="75322" stop="73517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75022" g_stop="74912" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74911" i_stop="74834" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74833" g_stop="74754" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="191" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74753" i_stop="74663" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74662" g_stop="74518" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="336" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74517" i_stop="74442" i_length="76">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74441" g_stop="74310" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="468" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74309" i_stop="74222" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74221" g_stop="73817" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="873" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E703880" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75022" e_stop="74912"/>
          <exon e_start="74833" e_stop="74754"/>
          <exon e_start="74662" e_stop="74518"/>
          <exon e_start="74441" e_stop="74310"/>
          <exon e_start="74221" e_stop="73817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTATTATCTGTTTCAGAGTCAAAAAAGCAATGGCAACCAACGGAGAAAATGGAAGACATCAAGAAGTTGGACACAAGAGTCTATTGCAAAGTGATGCCCTTTATCAGGTAAATTTAAAGGCCATATACAAGTGTACAAGTTTTTTTTATGAACGTCGTGTTGATCTTAATAAATTGTTTGAACAGTATATTCTTGAAACCAGTGTGTACCCAAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAAATAACTCATTTTCTCACTAATTACCTCATCCAATTGGATTGGTAGCTGGAACTAAGTATAAAAATTTTCATTTGGTGGAAAAAACAGGAACCTTATGACCACTTCTGCTGACGAAGGGCAGTTCTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACAATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTTGCTACTGCCATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTTTTTACTAACAAATGATAATTGCAACTTCATTATAAATCCTACTAATTTGCTACAATTGATTCAGATTCTAGCCATGGATATCAACCGCGATAACTATGAGATTGGACTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTACCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTATAACAACAAATAAATAAACTGATAACTTGTCTATGATGGTTAATGTGTTTCGAATAATTTTCTTTATAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAATTACTTGAACTATCACAAGAGATTAATCGACTTGGTCAAGATTGGTGGATTAATTGGCTATGACAACACCCTATGGAATGGATCAGTAGTTGCACCACCTGATGCACCCCTCAGGAAATATGTTAGGTATTACAGGGATTTCGTATTGGAACTTAACAAGGCGTTGGCTGCTGATCCCAGAATCGAAATTTGCCAGCTTCCTGTTGGTGATGGCATCACTCTTTGCCGTCGCATCAGTTAAAATATTCGTATAGTACTATTGGTGGCAATCAACAACTCATGAGTCATGACGATAGAGGATTTATCATTTTTGAAATCCCCTGTTTTACTCATTCGTTTAATTTTATCATTT</genome_strand>
        <mrna_strand>CTTACTATTATCTGTTTCAGAGTCAAAAAAGCAATGGCAACCAACGGAGAAAATGGAAGACATCAAGAAGTTGGACACAAGAGTCTATTGCAAAGTGATGCCCTTTATCAG..............................................................................TATATTCTTGAAACCAGTGTGTACCCAAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG...........................................................................................GAACCTTATGACCACTTCTGCTGACGAAGGGCAGTTCTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACAATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTTGCTACTGCCATGGCTCTTCCTGATGATGGCAAG............................................................................ATTCTAGCCATGGATATCAACCGCGATAACTATGAGATTGGACTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTACCTGTTCTTGACCAAATGATTGAAGAC........................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAATTACTTGAACTATCACAAGAGATTAATCGACTTGGTCAAGATTGGTGGATTAATTGGCTATGACAACACCCTATGGAATGGATCAGTAGTTGCACCACCTGATGCACCCCTCAGGAAATATGTTAGGTATTACAGGGATTTCGTATTGGAACTTAACAAGGCGTTGGCTGCTGATCCCAGAATCGAAATTTGCCAGCTTCCTGTTGGTGATGGCATCACTCTTTGCCGTCGCATCAGTTAAAATATTCGTATAGTACTATTGGTGGCAATCAACAACTCATGAGTCATGACGATAGAGGATTTATCATTTTTGAAATCCCCTGTTTTACTCATTCGTTTAATTTTATCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721791" ref_strand="+" ref_description="SGN-E721791 [FC15BC08]">
      <seq>gaggttggttgcttactattatctgtttcagagtcaaaaaagcaatggcaaccaacggagaaaatggaagacatcaagaagttggacacaagagtctattgcaaagtgatgccctttatcagtatattcttgaaaccagtgtgtacccaagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacttctgctgacgaagggcagttcttgaatatgcttctcaaactcatcaatgccaaaaacacaatggaaattggggtttttactggttactctctgcttgctactgccatggctcttcctgatgatggcaagattctagccatggatatcaaccgcgataactatgagattggacttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcactacctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaattacttgaactatcacaagagattaatcgacttggtcaagattggtggattaattggctatgacaacaccctatggaatggatcagtagttgcaccacctgatgcacccctcaggaaatatgttaggtattacagggatttcgtattggaacttaacaaggcgttggctgctgatcccagaatcgaaatttgccagcttcctgttggtgatggcatcactctttgccgtcgcatcagttaaaatattcgtatagtactattggtggcaatcaacaactcatgagtcatgacgatagaggatttatcattttttgaatcccctgttttactcattcgtttaattttatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="75332" stop="73518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75033" g_stop="74912" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74911" i_stop="74834" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74833" g_stop="74754" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="202" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74753" i_stop="74663" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74662" g_stop="74518" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="347" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74517" i_stop="74442" i_length="76">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74441" g_stop="74310" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="479" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74309" i_stop="74222" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74221" g_stop="73818" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="883" r_length="404" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E721791" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75033" e_stop="74912"/>
          <exon e_start="74833" e_stop="74754"/>
          <exon e_start="74662" e_stop="74518"/>
          <exon e_start="74441" e_stop="74310"/>
          <exon e_start="74221" e_stop="73818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTTGGTTGCTTACTATTATCTGTTTCAGAGTCAAAAAAGCAATGGCAACCAACGGAGAAAATGGAAGACATCAAGAAGTTGGACACAAGAGTCTATTGCAAAGTGATGCCCTTTATCAGGTAAATTTAAAGGCCATATACAAGTGTACAAGTTTTTTTTATGAACGTCGTGTTGATCTTAATAAATTGTTTGAACAGTATATTCTTGAAACCAGTGTGTACCCAAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAAATAACTCATTTTCTCACTAATTACCTCATCCAATTGGATTGGTAGCTGGAACTAAGTATAAAAATTTTCATTTGGTGGAAAAAACAGGAACCTTATGACCACTTCTGCTGACGAAGGGCAGTTCTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACAATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTTGCTACTGCCATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTTTTTACTAACAAATGATAATTGCAACTTCATTATAAATCCTACTAATTTGCTACAATTGATTCAGATTCTAGCCATGGATATCAACCGCGATAACTATGAGATTGGACTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTACCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTATAACAACAAATAAATAAACTGATAACTTGTCTATGATGGTTAATGTGTTTCGAATAATTTTCTTTATAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAATTACTTGAACTATCACAAGAGATTAATCGACTTGGTCAAGATTGGTGGATTAATTGGCTATGACAACACCCTATGGAATGGATCAGTAGTTGCACCACCTGATGCACCCCTCAGGAAATATGTTAGGTATTACAGGGATTTCGTATTGGAACTTAACAAGGCGTTGGCTGCTGATCCCAGAATCGAAATTTGCCAGCTTCCTGTTGGTGATGGCATCACTCTTTGCCGTCGCATCAGTTAAAATATTCGTATAGTACTATTGGTGGCAATCAACAACTCATGAGTCATGACGATAGAGGATTTATCATTTTTGAAATCCCCTGTTTTACTCATTCGTTTAATTTTATCATT</genome_strand>
        <mrna_strand>GAGGTTGGTTGCTTACTATTATCTGTTTCAGAGTCAAAAAAGCAATGGCAACCAACGGAGAAAATGGAAGACATCAAGAAGTTGGACACAAGAGTCTATTGCAAAGTGATGCCCTTTATCAG..............................................................................TATATTCTTGAAACCAGTGTGTACCCAAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG...........................................................................................GAACCTTATGACCACTTCTGCTGACGAAGGGCAGTTCTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACAATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTTGCTACTGCCATGGCTCTTCCTGATGATGGCAAG............................................................................ATTCTAGCCATGGATATCAACCGCGATAACTATGAGATTGGACTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTACCTGTTCTTGACCAAATGATTGAAGAC........................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAATTACTTGAACTATCACAAGAGATTAATCGACTTGGTCAAGATTGGTGGATTAATTGGCTATGACAACACCCTATGGAATGGATCAGTAGTTGCACCACCTGATGCACCCCTCAGGAAATATGTTAGGTATTACAGGGATTTCGTATTGGAACTTAACAAGGCGTTGGCTGCTGATCCCAGAATCGAAATTTGCCAGCTTCCTGTTGGTGATGGCATCACTCTTTGCCGTCGCATCAGTTAAAATATTCGTATAGTACTATTGGTGGCAATCAACAACTCATGAGTCATGACGATAGAGGATTTATCATTTTTTGAATCCCCTGTTTTACTCATTCGTTTAATTTTATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290885" ref_strand="+" ref_description="SGN-E290885 [cLET-10-L1]">
      <seq>tctagccatggatatcaaccgttataactatgagattggacttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcactacctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaattacttgaactatcacaagagattaatcgacttggtcaagattggtggattaattggctatgacaacaccctatggaatggatcagtagttgcaccacctgatgcacccctcaggaaatatgttaggtattacagggatttcgtattggaacttaacaaggcgttggctgctgatcccagaatcgaaatttgccagcttcctgttggtgatggcatcactctttgccgtcgcatcagttaaaatattcgtatagtactattggtggcaatcaacaactcatgagtcatgacgatagaggatgtatcatttttgaaatcccctgttttactcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="74739" stop="73534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74439" g_stop="74310" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74309" i_stop="74222" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74221" g_stop="73834" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="518" r_length="388" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E290885" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74439" e_stop="74310"/>
          <exon e_start="74221" e_stop="73834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGCCATGGATATCAACCGCGATAACTATGAGATTGGACTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTACCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTATAACAACAAATAAATAAACTGATAACTTGTCTATGATGGTTAATGTGTTTCGAATAATTTTCTTTATAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAATTACTTGAACTATCACAAGAGATTAATCGACTTGGTCAAGATTGGTGGATTAATTGGCTATGACAACACCCTATGGAATGGATCAGTAGTTGCACCACCTGATGCACCCCTCAGGAAATATGTTAGGTATTACAGGGATTTCGTATTGGAACTTAACAAGGCGTTGGCTGCTGATCCCAGAATCGAAATTTGCCAGCTTCCTGTTGGTGATGGCATCACTCTTTGCCGTCGCATCAGTTAAAATATTCGTATAGTACTATTGGTGGCAATCAACAACTCATGAGTCATGACGATAGAGGATTTATCATTTTTGAAATCCCCTGTTTTACTCATTC</genome_strand>
        <mrna_strand>TCTAGCCATGGATATCAACCGTTATAACTATGAGATTGGACTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTACCTGTTCTTGACCAAATGATTGAAGAC........................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAATTACTTGAACTATCACAAGAGATTAATCGACTTGGTCAAGATTGGTGGATTAATTGGCTATGACAACACCCTATGGAATGGATCAGTAGTTGCACCACCTGATGCACCCCTCAGGAAATATGTTAGGTATTACAGGGATTTCGTATTGGAACTTAACAAGGCGTTGGCTGCTGATCCCAGAATCGAAATTTGCCAGCTTCCTGTTGGTGATGGCATCACTCTTTGCCGTCGCATCAGTTAAAATATTCGTATAGTACTATTGGTGGCAATCAACAACTCATGAGTCATGACGATAGAGGATGTATCATTTTTGAAATCCCCTGTTTTACTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E548544" ref_strand="+" ref_description="SGN-E548544 [TUS-62-C22]">
      <seq>ttactattatctgtttcagagtcaaaaaagcaatggcaaccaacggagaaaatggaagacatcaagaagttggacacaagagtctattgcaaagtgatgccctttatcagtatattcttgaaaccagtgtgtacccaagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacttctgctgacgaagggcagttcttgaatatgcttctcaaactcatcaatgccaaaaacacaatggaaattggggtttttactggttactctctgcttgctactgccatggctcttcctgatgatggcaagattctagccatggatatcaaccgcgataactatgagattggacttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcactacctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaattacttgaactatcacaagagattaatcgacttggtcaagattggtggattaattggctatgacaacaccctatggaatggatcagtagttgcaccacctgatgcacccctcaggaaatatgttaggtattacagggatttcgtattggaacttaacaaggcgttggctgctgatcccagaatcgaaatttgccagcttcctgttggtgatggcatcactctttgccgtcgcatcagttaaaatattcgtatagtactatgggtggcaatcaacaactcatgagtcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="75321" stop="73579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75021" g_stop="74912" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74911" i_stop="74834" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74833" g_stop="74754" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="190" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74753" i_stop="74663" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74662" g_stop="74518" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="335" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74517" i_stop="74442" i_length="76">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74441" g_stop="74310" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="467" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74309" i_stop="74222" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74221" g_stop="73879" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="810" r_length="343" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E548544" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75021" e_stop="74912"/>
          <exon e_start="74833" e_stop="74754"/>
          <exon e_start="74662" e_stop="74518"/>
          <exon e_start="74441" e_stop="74310"/>
          <exon e_start="74221" e_stop="73879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTATTATCTGTTTCAGAGTCAAAAAAGCAATGGCAACCAACGGAGAAAATGGAAGACATCAAGAAGTTGGACACAAGAGTCTATTGCAAAGTGATGCCCTTTATCAGGTAAATTTAAAGGCCATATACAAGTGTACAAGTTTTTTTTATGAACGTCGTGTTGATCTTAATAAATTGTTTGAACAGTATATTCTTGAAACCAGTGTGTACCCAAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAAATAACTCATTTTCTCACTAATTACCTCATCCAATTGGATTGGTAGCTGGAACTAAGTATAAAAATTTTCATTTGGTGGAAAAAACAGGAACCTTATGACCACTTCTGCTGACGAAGGGCAGTTCTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACAATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTTGCTACTGCCATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTTTTTACTAACAAATGATAATTGCAACTTCATTATAAATCCTACTAATTTGCTACAATTGATTCAGATTCTAGCCATGGATATCAACCGCGATAACTATGAGATTGGACTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTACCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTATAACAACAAATAAATAAACTGATAACTTGTCTATGATGGTTAATGTGTTTCGAATAATTTTCTTTATAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAATTACTTGAACTATCACAAGAGATTAATCGACTTGGTCAAGATTGGTGGATTAATTGGCTATGACAACACCCTATGGAATGGATCAGTAGTTGCACCACCTGATGCACCCCTCAGGAAATATGTTAGGTATTACAGGGATTTCGTATTGGAACTTAACAAGGCGTTGGCTGCTGATCCCAGAATCGAAATTTGCCAGCTTCCTGTTGGTGATGGCATCACTCTTTGCCGTCGCATCAGTTAAAATATTCGTATAGTACTATTGGTGGCAATCAACAACTCATGAGTCATGA</genome_strand>
        <mrna_strand>TTACTATTATCTGTTTCAGAGTCAAAAAAGCAATGGCAACCAACGGAGAAAATGGAAGACATCAAGAAGTTGGACACAAGAGTCTATTGCAAAGTGATGCCCTTTATCAG..............................................................................TATATTCTTGAAACCAGTGTGTACCCAAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG...........................................................................................GAACCTTATGACCACTTCTGCTGACGAAGGGCAGTTCTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACAATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTTGCTACTGCCATGGCTCTTCCTGATGATGGCAAG............................................................................ATTCTAGCCATGGATATCAACCGCGATAACTATGAGATTGGACTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTACCTGTTCTTGACCAAATGATTGAAGAC........................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAATTACTTGAACTATCACAAGAGATTAATCGACTTGGTCAAGATTGGTGGATTAATTGGCTATGACAACACCCTATGGAATGGATCAGTAGTTGCACCACCTGATGCACCCCTCAGGAAATATGTTAGGTATTACAGGGATTTCGTATTGGAACTTAACAAGGCGTTGGCTGCTGATCCCAGAATCGAAATTTGCCAGCTTCCTGTTGGTGATGGCATCACTCTTTGCCGTCGCATCAGTTAAAATATTCGTATAGTACTATGGGTGGCAATCAACAACTCATGAGTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297578" ref_strand="+" ref_description="SGN-E297578 [cLET-28-K6]">
      <seq>tactattatctgtttcagagtcaaaaaagcaatggcaaccaacggagaaaatggaagacatcaagaagttggacacaagagtctattgcaaagtgatgccctttatcagtatattcttgaaaccagtgtgtacccaagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacttctgctgacgaagggcagttcttgaatatgcttctcaaactcatcaatgccaaaaacacaatggaaattggggtttttactggttactctctgcttgctactgccatggctcttcctgatgatggcaagattctagccatggatatcaaccgcgataactatgagattggacttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcactacctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaattacttgaactatcacaagagattaatcgacttggtcaagattggtggattaattggctatgacaacaccctatggaatggatcagtagttgcaccacctgatgcacccctcaagaaatatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="75320" stop="73744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75020" g_stop="74912" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74911" i_stop="74834" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74833" g_stop="74754" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="189" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74753" i_stop="74663" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74662" g_stop="74518" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="334" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74517" i_stop="74442" i_length="76">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74441" g_stop="74310" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="466" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74309" i_stop="74222" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74221" g_stop="74044" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="644" r_length="178" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E297578" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75020" e_stop="74912"/>
          <exon e_start="74833" e_stop="74754"/>
          <exon e_start="74662" e_stop="74518"/>
          <exon e_start="74441" e_stop="74310"/>
          <exon e_start="74221" e_stop="74044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTATTATCTGTTTCAGAGTCAAAAAAGCAATGGCAACCAACGGAGAAAATGGAAGACATCAAGAAGTTGGACACAAGAGTCTATTGCAAAGTGATGCCCTTTATCAGGTAAATTTAAAGGCCATATACAAGTGTACAAGTTTTTTTTATGAACGTCGTGTTGATCTTAATAAATTGTTTGAACAGTATATTCTTGAAACCAGTGTGTACCCAAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAAATAACTCATTTTCTCACTAATTACCTCATCCAATTGGATTGGTAGCTGGAACTAAGTATAAAAATTTTCATTTGGTGGAAAAAACAGGAACCTTATGACCACTTCTGCTGACGAAGGGCAGTTCTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACAATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTTGCTACTGCCATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTTTTTACTAACAAATGATAATTGCAACTTCATTATAAATCCTACTAATTTGCTACAATTGATTCAGATTCTAGCCATGGATATCAACCGCGATAACTATGAGATTGGACTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTACCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTATAACAACAAATAAATAAACTGATAACTTGTCTATGATGGTTAATGTGTTTCGAATAATTTTCTTTATAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAATTACTTGAACTATCACAAGAGATTAATCGACTTGGTCAAGATTGGTGGATTAATTGGCTATGACAACACCCTATGGAATGGATCAGTAGTTGCACCACCTGATGCACCCCTCAGGAAATATGTTA</genome_strand>
        <mrna_strand>TACTATTATCTGTTTCAGAGTCAAAAAAGCAATGGCAACCAACGGAGAAAATGGAAGACATCAAGAAGTTGGACACAAGAGTCTATTGCAAAGTGATGCCCTTTATCAG..............................................................................TATATTCTTGAAACCAGTGTGTACCCAAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG...........................................................................................GAACCTTATGACCACTTCTGCTGACGAAGGGCAGTTCTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACAATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTTGCTACTGCCATGGCTCTTCCTGATGATGGCAAG............................................................................ATTCTAGCCATGGATATCAACCGCGATAACTATGAGATTGGACTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTACCTGTTCTTGACCAAATGATTGAAGAC........................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAATTACTTGAACTATCACAAGAGATTAATCGACTTGGTCAAGATTGGTGGATTAATTGGCTATGACAACACCCTATGGAATGGATCAGTAGTTGCACCACCTGATGCACCCCTCAAGAAATATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269063" ref_strand="+" ref_description="SGN-E269063 [cLEI-16-P23]">
      <seq>caaaacacccttggaaccttatgaccactggtgctgacgaaaggcgggtcttgaatatgcttctcaaactcatcaatgccaaaaacacaatggaaattggggtttttactggttactctctgcttgctactgccatggctcttcctgatgatggcaagattctagccatggatatcaaccgcgataactatgaaaatggacttccagtaattgataaggctggtctagcgcacaaaattgaattcagagaaggccctgcactacctgttcttgaccaaatgattgaagacgggcaataccatggatcatatgatttcatatttgtggatgctgacaaggacaattacttgaactattacaagagattaatcgacttggtcaagatttggtggattaattggctatgacatcaccctattgaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="74963" stop="73787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74766" g_stop="74754" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74753" i_stop="74663" i_length="91">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.948" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74662" g_stop="74518" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="158" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74517" i_stop="74442" i_length="76">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74441" g_stop="74310" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="290" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74309" i_stop="74222" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74221" g_stop="74087" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="426" r_length="136" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E269063" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74766" e_stop="74754"/>
          <exon e_start="74662" e_stop="74518"/>
          <exon e_start="74441" e_stop="74310"/>
          <exon e_start="74221" e_stop="74087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACACCCTTGGTAAATAACTCATTTTCTCACTAATTACCTCATCCAATTGGATTGGTAGCTGGAACTAAGTATAAAAATTTTCATTTGGTGGAAAAAACAGGAACCTTATGACCACTTCTGCTGACGAAGGGCAGTTCTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACAATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTTGCTACTGCCATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTTTTTACTAACAAATGATAATTGCAACTTCATTATAAATCCTACTAATTTGCTACAATTGATTCAGATTCTAGCCATGGATATCAACCGCGATAACTATGAGATTGGACTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTACCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTATAACAACAAATAAATAAACTGATAACTTGTCTATGATGGTTAATGTGTTTCGAATAATTTTCTTTATAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAATTACTTGAACTATCACAAGAGATTAATCGACTTGGTCAAGA-TTGGTGGATTAATTGGCTATGACAACACCCTATGGAATGGA</genome_strand>
        <mrna_strand>CAAAACACCCTTG...........................................................................................GAACCTTATGACCACTGGTGCTGACGAAAGGCGGGTCTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACAATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTTGCTACTGCCATGGCTCTTCCTGATGATGGCAAG............................................................................ATTCTAGCCATGGATATCAACCGCGATAACTATGAAAATGGACTTCCAGTAATTGATAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTACCTGTTCTTGACCAAATGATTGAAGAC........................................................................................GGGCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAATTACTTGAACTATTACAAGAGATTAATCGACTTGGTCAAGATTTGGTGGATTAATTGGCTATGACATCACCCTATTGAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337131" ref_strand="+" ref_description="SGN-E337131 [cTOE-7-H1]">
      <seq>tgtttcagagtcaaaaaagcaatggcaaccaacggagaaaatggaagacatcaagaagttggacacaagagtctattgcaaagtgatgccctttatcagtatattcttgaaaccagtgtgtacccaagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacttctgctgacgaagggcagttcttgaatatgcttctcaaactcatcaatgccaaaaacacaatggaaattggggtttttactggttactctctgcttgctactgccatggctcttcctgatgatggcaagattctagccatggatatcaaccgcgataactatgagattggacttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="75310" stop="74051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75010" g_stop="74912" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74911" i_stop="74834" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74833" g_stop="74754" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="179" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74753" i_stop="74663" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74662" g_stop="74518" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="324" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74517" i_stop="74442" i_length="76">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74441" g_stop="74351" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="415" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-E337131" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75010" e_stop="74912"/>
          <exon e_start="74833" e_stop="74754"/>
          <exon e_start="74662" e_stop="74518"/>
          <exon e_start="74441" e_stop="74351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCAGAGTCAAAAAAGCAATGGCAACCAACGGAGAAAATGGAAGACATCAAGAAGTTGGACACAAGAGTCTATTGCAAAGTGATGCCCTTTATCAGGTAAATTTAAAGGCCATATACAAGTGTACAAGTTTTTTTTATGAACGTCGTGTTGATCTTAATAAATTGTTTGAACAGTATATTCTTGAAACCAGTGTGTACCCAAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAAATAACTCATTTTCTCACTAATTACCTCATCCAATTGGATTGGTAGCTGGAACTAAGTATAAAAATTTTCATTTGGTGGAAAAAACAGGAACCTTATGACCACTTCTGCTGACGAAGGGCAGTTCTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACAATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTTGCTACTGCCATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTTTTTACTAACAAATGATAATTGCAACTTCATTATAAATCCTACTAATTTGCTACAATTGATTCAGATTCTAGCCATGGATATCAACCGCGATAACTATGAGATTGGACTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAG</genome_strand>
        <mrna_strand>TGTTTCAGAGTCAAAAAAGCAATGGCAACCAACGGAGAAAATGGAAGACATCAAGAAGTTGGACACAAGAGTCTATTGCAAAGTGATGCCCTTTATCAG..............................................................................TATATTCTTGAAACCAGTGTGTACCCAAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG...........................................................................................GAACCTTATGACCACTTCTGCTGACGAAGGGCAGTTCTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACAATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTTGCTACTGCCATGGCTCTTCCTGATGATGGCAAG............................................................................ATTCTAGCCATGGATATCAACCGCGATAACTATGAGATTGGACTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390218" ref_strand="+" ref_description="SGN-E390218 [TUS-39-H24]">
      <seq>caaaattaacttgatctgctcaacactgaacttgattttgctggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtttcttcctcatctgttgggaccatagattacgatccggatgagtatgaatgtgaaagtgaggatggtacagaggatttgggggcggaagcttcagttcaaccgccatctcgtaacacttccaagagaagcagagcagctgaagtgcacaatttgtctgaaaagaggagaagaagcaggattaatgagaagatgaaagcattgcnaaaacttattccaaattcaaataagactgacaaggcttcaatgcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="84759" stop="86294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85059" g_stop="85462" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85463" i_stop="85596" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85597" g_stop="85698" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="506" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85699" i_stop="85781" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85782" g_stop="85847" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="572" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85848" i_stop="85971" i_length="124">
            <donor d_prob="0.802" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85972" g_stop="85994" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="595" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E390218" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85059" e_stop="85462"/>
          <exon e_start="85597" e_stop="85698"/>
          <exon e_start="85782" e_stop="85847"/>
          <exon e_start="85972" e_stop="85994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTAACTTGATCTGCTCAACACTGAACTTGATTTTGCTGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAGGTATTTCTACATTTTCTACTTAATTCGTTTTGATTAATTAGTGTATTTAAGTTTTTATTTCCGAATTTGACTTTTTTACTTAATCCTGGTATATATATATATATATATTTTGTGATGATTTTTTTAATATGTAGGATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAGGTTTGTTTATTTTTTTGTTAATTAAGTTCATTATTGTCTGAATCGATGATTCCACGGGTTTAAATCTTGAATATGATTTACAGAGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAGGTGAGGAGTTGCATGTCTAGCAATTTTGAATCGAGTCTTGAAATAAGTAAATAACATAAACTTTTAGCAATATAAAGCTTAAAAGATTTTTGATTTTATTATTTTCTGATGGATTTCTGGACAGACTGACAAGGCTTCAATGCTTGA</genome_strand>
        <mrna_strand>CAAAATTAACTTGATCTGCTCAACACTGAACTTGATTTTGCTGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG......................................................................................................................................GATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAG...................................................................................AGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCNAAAACTTATTCCAAATTCAAATAAG............................................................................................................................ACTGACAAGGCTTCAATGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265834" ref_strand="+" ref_description="SGN-E265834 [cLEI-11-G2]">
      <seq>aaaattaacttgatctgctcaacactgaacttgattttgctggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtttcttcctcatctgttgggaccatagattacgatccggatgagtatgaatgtgaaagtgaggatggtacagaggatttgggggcggaagcttcagttcaaccgccatctcgtaacacttccaagagaagcagagcagctgaagtgcacaatttgtctgaaaagaggagaagaagcaggattaatgagaagatgaaagcattgcaaaaacttattccaaattcaaataagactgacaaggcttcaatgcttgatgaagccattgagtatcttaagcagcttcagctccaagtacagatgttgacaatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="84760" stop="86342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85060" g_stop="85462" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85463" i_stop="85596" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85597" g_stop="85698" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="505" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85699" i_stop="85781" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85782" g_stop="85847" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="571" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85848" i_stop="85971" i_length="124">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85972" g_stop="86037" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="637" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86038" i_stop="86314" i_length="277">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86315" g_stop="86328" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="651" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E265834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85060" e_stop="85462"/>
          <exon e_start="85597" e_stop="85698"/>
          <exon e_start="85782" e_stop="85847"/>
          <exon e_start="85972" e_stop="86037"/>
          <exon e_start="86315" e_stop="86328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAACTTGATCTGCTCAACACTGAACTTGATTTTGCTGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAGGTATTTCTACATTTTCTACTTAATTCGTTTTGATTAATTAGTGTATTTAAGTTTTTATTTCCGAATTTGACTTTTTTACTTAATCCTGGTATATATATATATATATATTTTGTGATGATTTTTTTAATATGTAGGATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAGGTTTGTTTATTTTTTTGTTAATTAAGTTCATTATTGTCTGAATCGATGATTCCACGGGTTTAAATCTTGAATATGATTTACAGAGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAGGTGAGGAGTTGCATGTCTAGCAATTTTGAATCGAGTCTTGAAATAAGTAAATAACATAAACTTTTAGCAATATAAAGCTTAAAAGATTTTTGATTTTATTATTTTCTGATGGATTTCTGGACAGACTGACAAGGCTTCAATGCTTGATGAAGCCATTGAGTATCTTAAGCAGCTTCAGCTCCAAGTACAGGTTTGCTGCTTCTGTTTAAATTTGCTGCATGTAATTTGTTTGGTATGATGGGGAGATAAAGATATTTTTTTAGAGGATAATATAATGTAATATTGTGTTGATTGGCCCAACTTTAGTGAAATTTAAAGTTCAGATAGTTGCAAAGAACATGTAGTGTTATTTGACTCAATTCAGTATATTTCCTAGATTGGTTCTAGCTGGTTATCTGTTCATTTAACACTAGTTGATTCGATCAAGTTATATGATTTATAGCATAAGAATGTACTTTGATCTGTAGATGTTGACAATGAG</genome_strand>
        <mrna_strand>AAAATTAACTTGATCTGCTCAACACTGAACTTGATTTTGCTGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG......................................................................................................................................GATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAG...................................................................................AGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAG............................................................................................................................ACTGACAAGGCTTCAATGCTTGATGAAGCCATTGAGTATCTTAAGCAGCTTCAGCTCCAAGTACAG.....................................................................................................................................................................................................................................................................................ATGTTGACAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396789" ref_strand="+" ref_description="SGN-E396789 [TUS-43-J8]">
      <seq>ctggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtttcttcctcatctgttgggaccatagattacgatccggatgagtatgaatgtgaaagtgaggatggtacagaggatttgggggcggaagcttcagttcaaccgccatctcgtaacacttccaagagaagcagagcagctgaagtgcacaatttgtctgaaaagaggagaagaagcaggattaatgagaagatgaaagcattgcaaaaacttattccaaattcaaataaaactgacaaggcttcaatgcttgatgaagccattgagtatcttaagcagcttcagctccaagtacagatgttgacaatgagaaacgggttaaacatgtatcctcttggcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="84799" stop="86660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85099" g_stop="85462" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85463" i_stop="85596" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85597" g_stop="85698" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="466" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85699" i_stop="85781" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85782" g_stop="85847" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="532" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85848" i_stop="85971" i_length="124">
            <donor d_prob="0.802" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85972" g_stop="86037" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="598" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86038" i_stop="86314" i_length="277">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86315" g_stop="86360" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="644" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E396789" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85099" e_stop="85462"/>
          <exon e_start="85597" e_stop="85698"/>
          <exon e_start="85782" e_stop="85847"/>
          <exon e_start="85972" e_stop="86037"/>
          <exon e_start="86315" e_stop="86360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAGGTATTTCTACATTTTCTACTTAATTCGTTTTGATTAATTAGTGTATTTAAGTTTTTATTTCCGAATTTGACTTTTTTACTTAATCCTGGTATATATATATATATATATTTTGTGATGATTTTTTTAATATGTAGGATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAGGTTTGTTTATTTTTTTGTTAATTAAGTTCATTATTGTCTGAATCGATGATTCCACGGGTTTAAATCTTGAATATGATTTACAGAGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAGGTGAGGAGTTGCATGTCTAGCAATTTTGAATCGAGTCTTGAAATAAGTAAATAACATAAACTTTTAGCAATATAAAGCTTAAAAGATTTTTGATTTTATTATTTTCTGATGGATTTCTGGACAGACTGACAAGGCTTCAATGCTTGATGAAGCCATTGAGTATCTTAAGCAGCTTCAGCTCCAAGTACAGGTTTGCTGCTTCTGTTTAAATTTGCTGCATGTAATTTGTTTGGTATGATGGGGAGATAAAGATATTTTTTTAGAGGATAATATAATGTAATATTGTGTTGATTGGCCCAACTTTAGTGAAATTTAAAGTTCAGATAGTTGCAAAGAACATGTAGTGTTATTTGACTCAATTCAGTATATTTCCTAGATTGGTTCTAGCTGGTTATCTGTTCATTTAACACTAGTTGATTCGATCAAGTTATATGATTTATAGCATAAGAATGTACTTTGATCTGTAGATGTTGACAATGAGAAACGGGTTAAACATGTATCCTCTTGGCCTGC</genome_strand>
        <mrna_strand>CTGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG......................................................................................................................................GATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAG...................................................................................AGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAA............................................................................................................................ACTGACAAGGCTTCAATGCTTGATGAAGCCATTGAGTATCTTAAGCAGCTTCAGCTCCAAGTACAG.....................................................................................................................................................................................................................................................................................ATGTTGACAATGAGAAACGGGTTAAACATGTATCCTCTTGGCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227089" ref_strand="+" ref_description="SGN-E227089 [cLED-1-H9]">
      <seq>tggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtttcttcctcatctgttgggaccatagattacgatccggatgagtatgaatgtgaaagtgaggatggtacagaggatttgggggcggaagcttcagttcaaccgccatctcgtaacacttccaagagaagcagagcagctgaagtgcacaatttgtctgaaaagaggagaagaagcaggattaatgagaagatgaaagcattgcaaaaacttattccaaattcaaataagactgacaaggcttcaatgcttgatgaacccattgagtatcttaagcagcttcagctccaagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="84800" stop="86335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85100" g_stop="85462" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85463" i_stop="85596" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85597" g_stop="85698" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="465" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85699" i_stop="85781" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85782" g_stop="85847" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="531" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85848" i_stop="85971" i_length="124">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85972" g_stop="86035" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="595" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E227089" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85100" e_stop="85462"/>
          <exon e_start="85597" e_stop="85698"/>
          <exon e_start="85782" e_stop="85847"/>
          <exon e_start="85972" e_stop="86035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAGGTATTTCTACATTTTCTACTTAATTCGTTTTGATTAATTAGTGTATTTAAGTTTTTATTTCCGAATTTGACTTTTTTACTTAATCCTGGTATATATATATATATATATTTTGTGATGATTTTTTTAATATGTAGGATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAGGTTTGTTTATTTTTTTGTTAATTAAGTTCATTATTGTCTGAATCGATGATTCCACGGGTTTAAATCTTGAATATGATTTACAGAGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAGGTGAGGAGTTGCATGTCTAGCAATTTTGAATCGAGTCTTGAAATAAGTAAATAACATAAACTTTTAGCAATATAAAGCTTAAAAGATTTTTGATTTTATTATTTTCTGATGGATTTCTGGACAGACTGACAAGGCTTCAATGCTTGATGAAGCCATTGAGTATCTTAAGCAGCTTCAGCTCCAAGTAC</genome_strand>
        <mrna_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG......................................................................................................................................GATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAG...................................................................................AGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAG............................................................................................................................ACTGACAAGGCTTCAATGCTTGATGAACCCATTGAGTATCTTAAGCAGCTTCAGCTCCAAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238321" ref_strand="+" ref_description="SGN-E238321 [cLED-17-M11]">
      <seq>tggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtttcttcctcatctgttgggaccatagattacgatccggatgagtatgaatgtgaaagtgaggatggtacagaggatttgggggcggaagcttcagttcaaccgccatctcgtaacacttccaagagaagcagagcagctgaagtgcacaatttgtctgaaaagaggagaagaagcaggattaatgagaagatgaaagcattgcaaaaacttattccaaattcaaataagactgacaaggcttcaatgcttgatgaagccattgagtatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="84800" stop="86312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85100" g_stop="85462" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85463" i_stop="85596" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85597" g_stop="85698" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="465" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85699" i_stop="85781" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85782" g_stop="85847" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="531" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85848" i_stop="85971" i_length="124">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85972" g_stop="86012" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="572" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E238321" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85100" e_stop="85462"/>
          <exon e_start="85597" e_stop="85698"/>
          <exon e_start="85782" e_stop="85847"/>
          <exon e_start="85972" e_stop="86012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAGGTATTTCTACATTTTCTACTTAATTCGTTTTGATTAATTAGTGTATTTAAGTTTTTATTTCCGAATTTGACTTTTTTACTTAATCCTGGTATATATATATATATATATTTTGTGATGATTTTTTTAATATGTAGGATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAGGTTTGTTTATTTTTTTGTTAATTAAGTTCATTATTGTCTGAATCGATGATTCCACGGGTTTAAATCTTGAATATGATTTACAGAGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAGGTGAGGAGTTGCATGTCTAGCAATTTTGAATCGAGTCTTGAAATAAGTAAATAACATAAACTTTTAGCAATATAAAGCTTAAAAGATTTTTGATTTTATTATTTTCTGATGGATTTCTGGACAGACTGACAAGGCTTCAATGCTTGATGAAGCCATTGAGTATCT</genome_strand>
        <mrna_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG......................................................................................................................................GATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAG...................................................................................AGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAG............................................................................................................................ACTGACAAGGCTTCAATGCTTGATGAAGCCATTGAGTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243638" ref_strand="+" ref_description="SGN-E243638 [cLED-34-J7]">
      <seq>tggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtttcttcctcatctgttgggaccatagattacgatccggatgagtatgaatgtgaaagtgaggatggtacagaggatttgggggcggaagcttcagttcaaccgccatctcgtaacacttccaagagaagcagagcagctgaagtgcacaatttgtctgaaaagaggagaagaagcaggattaatgagaagatgaaagcattgcaaaaacttattccaaattcaaataagactgacaaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="84800" stop="86147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85100" g_stop="85462" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85463" i_stop="85596" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85597" g_stop="85698" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="465" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85699" i_stop="85781" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85782" g_stop="85847" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="531" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85848" i_stop="85971" i_length="124">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85972" g_stop="85982" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="542" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E243638" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85100" e_stop="85462"/>
          <exon e_start="85597" e_stop="85698"/>
          <exon e_start="85782" e_stop="85847"/>
          <exon e_start="85972" e_stop="85982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAGGTATTTCTACATTTTCTACTTAATTCGTTTTGATTAATTAGTGTATTTAAGTTTTTATTTCCGAATTTGACTTTTTTACTTAATCCTGGTATATATATATATATATATTTTGTGATGATTTTTTTAATATGTAGGATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAGGTTTGTTTATTTTTTTGTTAATTAAGTTCATTATTGTCTGAATCGATGATTCCACGGGTTTAAATCTTGAATATGATTTACAGAGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAGGTGAGGAGTTGCATGTCTAGCAATTTTGAATCGAGTCTTGAAATAAGTAAATAACATAAACTTTTAGCAATATAAAGCTTAAAAGATTTTTGATTTTATTATTTTCTGATGGATTTCTGGACAGACTGACAAGGC</genome_strand>
        <mrna_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG......................................................................................................................................GATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAG...................................................................................AGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAG............................................................................................................................ACTGACAAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367884" ref_strand="+" ref_description="SGN-E367884 [TUS-22-E5]">
      <seq>tggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtttcttcctcatctgttgggaccatagattacgatccggatgagtatgaatgtgaaagtgaggatggtacagaggatttgggggcggaagcttcagttcaaccgccatctcgtaacacttccaagagaagcagagcagctgaagtgcacaatttgtctgaaaagaggataata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="84800" stop="85998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85100" g_stop="85462" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85463" i_stop="85596" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85597" g_stop="85698" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="465" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85699" i_stop="85781" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85782" g_stop="85790" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="474" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E367884" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85100" e_stop="85462"/>
          <exon e_start="85597" e_stop="85698"/>
          <exon e_start="85782" e_stop="85790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAGGTATTTCTACATTTTCTACTTAATTCGTTTTGATTAATTAGTGTATTTAAGTTTTTATTTCCGAATTTGACTTTTTTACTTAATCCTGGTATATATATATATATATATTTTGTGATGATTTTTTTAATATGTAGGATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAGGTTTGTTTATTTTTTTGTTAATTAAGTTCATTATTGTCTGAATCGATGATTCCACGGGTTTAAATCTTGAATATGATTTACAGAGGAGAAGA</genome_strand>
        <mrna_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG......................................................................................................................................GATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAG...................................................................................AGGATAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238607" ref_strand="+" ref_description="SGN-E238607 [cLED-17-J22]">
      <seq>tggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtttcttcctcatctgttgggaccatagattacgatccggatgagtatgaatgtgaaagtgaggatggtacagaggatttgggggcggaagcttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="84800" stop="85930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85100" g_stop="85462" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85463" i_stop="85596" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85597" g_stop="85630" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="397" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E238607" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85100" e_stop="85462"/>
          <exon e_start="85597" e_stop="85630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAGGTATTTCTACATTTTCTACTTAATTCGTTTTGATTAATTAGTGTATTTAAGTTTTTATTTCCGAATTTGACTTTTTTACTTAATCCTGGTATATATATATATATATATTTTGTGATGATTTTTTTAATATGTAGGATGGTACAGAGGATTTGGGGGCGGAAGCTTCAG</genome_strand>
        <mrna_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG......................................................................................................................................GATGGTACAGAGGATTTGGGGGCGGAAGCTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237759" ref_strand="+" ref_description="SGN-E237759 [cLED-19-N24]">
      <seq>tggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtttcttcctcatctgttgggaccatagattacgatccggatgagtatgaatgtgaaagtgaggatggtacagaggatttggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="84800" stop="85918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85100" g_stop="85462" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85463" i_stop="85596" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85597" g_stop="85618" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="385" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E237759" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85100" e_stop="85462"/>
          <exon e_start="85597" e_stop="85618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAGGTATTTCTACATTTTCTACTTAATTCGTTTTGATTAATTAGTGTATTTAAGTTTTTATTTCCGAATTTGACTTTTTTACTTAATCCTGGTATATATATATATATATATTTTGTGATGATTTTTTTAATATGTAGGATGGTACAGAGGATTTGGGGG</genome_strand>
        <mrna_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG......................................................................................................................................GATGGTACAGAGGATTTGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233578" ref_strand="+" ref_description="SGN-E233578 [cLED-9-B12]">
      <seq>tggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtttcttcctcatctgttgggaccatagattacgatccggatgagtatgaatgtgaaagtgaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="84800" stop="85766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85100" g_stop="85462" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E233578" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85100" e_stop="85462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG</genome_strand>
        <mrna_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237792" ref_strand="+" ref_description="SGN-E237792 [cLED-18-K7]">
      <seq>tggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="84800" stop="85702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85100" g_stop="85402" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E237792" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85100" e_stop="85402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTT</genome_strand>
        <mrna_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390441" ref_strand="+" ref_description="SGN-E390441 [TUS-39-H24](-)">
      <seq>catcaaaaagtaggtttgtgcgaggggaatgcattcacaaatgccaaagtggctgggaatctacaagttaaccaagacgcctcgttaaatgctattttcaacccaactgaaaattgtacagaaactaaggtaacaccaccgataactatgtcaaatataaaccggtcagacagtgcgtttgagcttgagtcatcgatgaatattcaccttgatccctttcagctctcaagatctaccagcaaggaaatttggagggaggatgacttacctttatatggtatgaatgagctaacgaccaaaactgcatcaactggatcaaatctggcattctcagttcccctagatacggatgcatctaacctgaagagaagcactcgggaggcctgcttgcttcgatatcagtttggtgctgtgaatgaaaccaatctggattgtgaccaacttctttcccaacaactgtatagcaacttctgaattttggcctgcatcgccttgctggattttgttgaagtaatgagacatgcattttgctgcttaggacgtttaatgttgttaacttttgggctcactagccactgtaatgaatgaatggaatataaatgaaaagattggactagtttctatcttgttatgaaatacgaaaattactactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="86090" stop="87660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86390" g_stop="86632" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86633" i_stop="86743" i_length="111">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86744" g_stop="86813" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="313" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86814" i_stop="86903" i_length="90">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86904" g_stop="87054" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="464" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87055" i_stop="87171" i_length="117">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87172" g_stop="87371" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="664" r_length="200" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E390441" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86390" e_stop="86632"/>
          <exon e_start="86744" e_stop="86813"/>
          <exon e_start="86904" e_stop="87054"/>
          <exon e_start="87172" e_stop="87371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAAAAGTAGGTTTGTGCGAGGGGAATGCATTCACAAATGCCAAAGTGGCTGGGAATCTACAAGTTAACCAAGACGCCTCGTTAAATGCTATTTTCAACCCAACTGAAAATTGTACAGAAACTAAGGTAACACCACCGATAACTATGTCAAATATAAACCGGTCAGACAGTGCGTTTGAGCTTGAGTCATCGATGAATATTCACCTTGATCCCTTTCAGCTCTCAAGATCTACCAGCAAGGTATGTTGGATACAAAACCTATTGGAATGCCATTTTTTATGAGGATGCAGAATTGCAGATTAAGGAATCAATTTATTTAACCATTTGACATTCACATTCTGTTTTGCGAAGGAAATTTGGAGGGAGGATGACTTACCTTTATATGGTATGAATGAGCTAACGACCAAAACTGCATCAACTGGTAGATTATTTGCTTGATATCCTTGCCTAGTTGACAACTTTTGCCTTGTATCCAGGTCTCTTTACCATTTTATATTTCATTGTATTATAGGATCAAATCTGGCATTCTCAGTTCCCCTAGATACGGATGCATCTAACCTGAAGAGAAGCACTCGGGAGGCCTGCTTGCTTCGATATCAGTTTGGTGCTGTGAATGAAACCAATCTGGATTGTGACCAACTTCTTTCCCAACAACTGTATAGGTAAGTGAACTCACATTATACCCGTGCTCTTACATAGCAATGATTTTTTTTAGTCCTTGTTCTATTGTTAGTCACTTTGGAAGTACTTATGTTGACATTATCTTAAGGTGAATGCAGCAACTTCTGAATTTTGGCCTGCATCGCCTTGCTGGATTTTGTTGAAGTAATGAGACATGCATTTTGCTGCTTAGGACGTTTAATGTTGTTAACTTTTGGGCTCACTAGCCACTGTAATGAATGAATGGAATATAAATGAAAAGATTGGACTAGTTTCTATCTTGTTATGAAATACGAAAATTACTACTAGGCATAGGATA</genome_strand>
        <mrna_strand>CATCAAAAAGTAGGTTTGTGCGAGGGGAATGCATTCACAAATGCCAAAGTGGCTGGGAATCTACAAGTTAACCAAGACGCCTCGTTAAATGCTATTTTCAACCCAACTGAAAATTGTACAGAAACTAAGGTAACACCACCGATAACTATGTCAAATATAAACCGGTCAGACAGTGCGTTTGAGCTTGAGTCATCGATGAATATTCACCTTGATCCCTTTCAGCTCTCAAGATCTACCAGCAAG...............................................................................................................GAAATTTGGAGGGAGGATGACTTACCTTTATATGGTATGAATGAGCTAACGACCAAAACTGCATCAACTG..........................................................................................GATCAAATCTGGCATTCTCAGTTCCCCTAGATACGGATGCATCTAACCTGAAGAGAAGCACTCGGGAGGCCTGCTTGCTTCGATATCAGTTTGGTGCTGTGAATGAAACCAATCTGGATTGTGACCAACTTCTTTCCCAACAACTGTATAG.....................................................................................................................CAACTTCTGAATTTTGGCCTGCATCGCCTTGCTGGATTTTGTTGAAGTAATGAGACATGCATTTTGCTGCTTAGGACGTTTAATGTTGTTAACTTTTGGGCTCACTAGCCACTGTAATGAATGAATGGAATATAAATGAAAAGATTGGACTAGTTTCTATCTTGTTATGAAATACGAAAATTACTACTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708579" ref_strand="+" ref_description="SGN-E708579 [FA36AF05]">
      <seq>gtttattgctaattttaaatttactgaggatgagatagctttcatcaggtcatcgttgccatcgtcatgtgaggatggcttctttgaataccttcgaagacttgactgttcagatattgagatatattctatttctgaaggatcagtagtttttcccaaggtaccgctgatgaggattgaaggaccagttgctgtggttcaactactggaaacaccatttgtaaacctcataaattatgcatcactagttactactaatgctgcaagacaccgtttcgttgctggaaggtccaaaatattgcttgaatttgggcttaggagagcacagggtcctgatggtggtatatcagcatccaagtattgctacatgggtggatttgatgcgacaagcaatgtggcagctggaaagctgtttggaatcccactccgtgggacacattcccatgcctttgttagctcatttctgagcccagatgagatcatagagaaatcacttcaacatcataatggttctagtgtttgtgaggattttgttagtctggtacagacatggcttgataaattaaagtggtcacacttattgggtggaattttcagcgagacaaatcaaagtgagttagccgctttcgcctcgtatgcacttgcatttcctggaagttttttggcccttgtagacacttatgatgtcatgagaagtggtcttccaaatttttgtgcagttgctcttgcacttaatgatttggggtataaagcagtgggcattagactagactctggtgatcttgcttatcagtcatgtgaagctaggaaattcttttgtgctattgagaaagaatttggattgcctggttttgcaaagacgagtatcacagctagcaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="89054" stop="94780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89354" g_stop="89426" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89427" i_stop="90301" i_length="875">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90302" g_stop="90421" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="193" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90422" i_stop="90541" i_length="120">
            <donor d_prob="0.774" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90542" g_stop="90676" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="328" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90677" i_stop="90756" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90757" g_stop="90818" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="390" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90819" i_stop="91165" i_length="347">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91166" g_stop="91241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="466" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91242" i_stop="92132" i_length="891">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92133" g_stop="92234" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="568" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92235" i_stop="93094" i_length="860">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93095" g_stop="93211" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="685" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93212" i_stop="93514" i_length="303">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="93515" g_stop="93573" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="744" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="93574" i_stop="94601" i_length="1028">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="94602" g_stop="94739" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="882" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E708579" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89354" e_stop="89426"/>
          <exon e_start="90302" e_stop="90421"/>
          <exon e_start="90542" e_stop="90676"/>
          <exon e_start="90757" e_stop="90818"/>
          <exon e_start="91166" e_stop="91241"/>
          <exon e_start="92133" e_stop="92234"/>
          <exon e_start="93095" e_stop="93211"/>
          <exon e_start="93515" e_stop="93573"/>
          <exon e_start="94602" e_stop="94739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTGCTAATTTTAAATTTACTGAGGATGAGATAGCTTTCATCAGGTCATCGTTGCCATCGTCATGTGAGGTAAAGTTGTTATTAACAAGCAAATATGGAGACATTATGTGGTGAAAATCAAGATAGCAAGATTGATATCAAGAATGGTCTCTTTTAATGAATCTTTCATGATACGTTGAGCCCTTTGTGGGTGATTGGAAACTTTCATATCCAAGATGGACCACAACCCCATTCTTGATATCAATCTTGCTATCTTGATTTGCACCACATATGTGTTGAACTTTTTGTGCTGATATATTGAATTCTGCTATCTGAATTAAGATATCATGTGGTCATTTGTTTATCCTTTACTCCTTTTCTATTATCCTCTGTTTTTGGATCTTTCTAAGGGTATTATTCAAATCGCCTGTAAAATTTGGGAACAAATGCTTTCTTGATGAGTTTATCTTCCATTGGCCAAAATATGATCATAAACAATTAATGCAACTGTACTTTTTCTTTGGGAATCCCTGCCTATTTCATAAACATGTCATCCCAGTATGTTTGGGATAATCAAGCTGTGACTGATGCTCCATCTGGTCATGCGTTATACTACTTCATCGTTCCATCTTGTTTATTCACTTCTGGTTTGGCACAATTTTAGAACAGAATATTAGTATGCGCTGTTCAATATTTGTTTAGGAGCATGTGGGCCCATAGTTTGACTTCTGTGTTGATGACAAATAGATTAAAAGATGAAATTCGATTGGAAATGTAAAAGTAAATCTTTAATGAAACTATTGTGGTATTTAAAATGTCTTCGCACTTTATACTTATTAAAATTGATTGGGAAATCTAAAAGGGAAAGTATGTGGGAGAATGGAGTGCTTCTTCAGGGAATATGTTTCTGTTTACTTTAAAGAATTTTTTGCTATGCTGAGAGCATATTTAAATGGATTATGTAGGATGGCTTCTTTGAATACCTTCGAAGACTTGACTGTTCAGATATTGAGATATATTCTATTTCTGAAGGATCAGTAGTTTTTCCCAAGGTACCGCTGATGAGGATTGAAGGACCAGTTGCTGTGAGTCACAATAACACTATCCTTTATTAGTGCTTTCTTTTGAAGCATCTCAACAGGGTTGTCTGTTGGATCTTCTCATGTACATCTCTAATAAGCTTAATGATTGCTTGTGTCTCAAAGGTGGTTCAACTACTGGAAACACCATTTGTAAACCTCATAAATTATGCATCACTAGTTACTACTAATGCTGCAAGACACCGTTTCGTTGCTGGAAGGTCCAAAATATTGCTTGAATTTGGGCTTAGGAGAGCACAGGTTGTTTATCTTTCCTATTATCATCTTTATATTTTATACATGTACAAACTGTGAACAAACTTTTGTACCTTCATGAGTAGGGTCCTGATGGTGGTATATCAGCATCCAAGTATTGCTACATGGGTGGATTTGATGCGACAAGGTGATTTCGTGTTTATTTCACTGTGTCTCTATGAAATGCATCATCTACTTATCTTTTTCCAATGATCTAACCAGAAAAATAATCATTCAAGAAAGAATTTGATCCGTAAGATGGATGGTTACAGTTGATAAAAAACTATGGTGTACTTTTACGTTTACATGCTGCATTATGGATTGCTGCAACCTAATGTTATATCTTTTGCTGGTTATGTTTATCATTTTGATAAGGAAATAAAATTTCTTTTTGTAAGTTAGAATGCTGAGACATTATTTTATTCCTGTTGGTGTTTTCTTTCTTTTTAATCATAGCCAAGACTGGAGGTTCACTGTTTCTTTGTGATTTGACAGCAATGTGGCAGCTGGAAAGCTGTTTGGAATCCCACTCCGTGGGACACATTCCCATGCCTTTGTTAGCTCATTTCTGGTAGGTGCAACCTTCAAAGATCTAGTTTATAGTCAAAGCATAGTAAGAAACATGTCTTAGGATAGTAAAGTGCTCCGTTCAAATTCCCATTTTAGTCCCTTATACGAATGTTAGTTTGTCTTCAGTTACTCATCTATTGTTATTATTATCATTTTTCATTATTACAGTCATTTTGAAGGTATAATTACCACATCTATTTGCTTGCTGGCCAACTTAATGTAGACATAATCATTTCATCTGTAACACATTTGATGACAATATTATGAATTTAATACTGAAAAGACGTTCTTGGCTGTTAAACAAATTACTTAAATTGTTTGATAGAGTCATTCACTATTGTAAGTGGAATGCAAGTGGTTTTTTTTGCTCTTATGGCTCCATATGTATTGATAGGGTACATAAATGCTTGTATATACTCAATTGGTTAAGTGACAATTGTAGTTTCTACCTCAATGTCATTGAGTGGCATCAGTTAAATATGTTAGTCAATGCATAATTGCACATAGCTCAATCACTAACTCATATGAAATTATGTGTATTGGAATGGCAAGCTTAGAGCTAATTATTGTTATACATATGATAAAATTATTTTCTGTCCTGACTTATCAAAAAATACATGATCGATTATCCAGGCTTCAGCTAGAATCCTTAGTAGATGTAATTATGAACTCATCATGTCATGTTCTCTGTGGATACTAATTTCAAGTTTTGTTACTATCAATTGTTTTGTCATGTGCACGTTATCTTGCTTATTGATGAATATAAAGACAAGTAAATTAAGTACTCAAATGTTCTGTAGATGCCTAGTATTTCTTTTTCTCTAGATTGTGCACTCAACATCTTCTACTTGCTTGAAGTTATCTGGTATTTAACTTAGTCCTTATGATGCAGAGCCCAGATGAGATCATAGAGAAATCACTTCAACATCATAATGGTTCTAGTGTTTGTGAGGATTTTGTTAGTCTGGTACAGACATGGCTTGATAAATTAAAGGTATTAATCATCTCATTCTTTTGATGCACTAGTTAGATCATCAAAAAAAAAAAAATTATTGAAGTCTTCCATTTGATTTTTTTTCTTGGAATCTGACCATTTCGGTTTATGCATTCTGATAAATCATATTGGTTCTCTATATTGGTATCACCTTTTTCATTTCAAATATCATTTAGCGTTGACTTCAATTTTCACCTTTTCATTTCAATATACTGAACTAAGCTCCTAGTCTTCCTTACCAAACCTGCTCAAAATCCACACCGTCAAGAGCATATGTGGTTTGAGTGACTGTCAGAGTGTCAATTCTTGTCAGTGTTTAATAAAGTAGGCCTAACATAGAAAACCTGAGGGAGTTTATGTTACAATTTGATTGCCAAAAGGGAGTATGATGTATAATTCCTTCATTTAATTCTGCTTAACCCCTATGGATAGCTGAACTCGTAGCCAGAATACTGGACATGTGCCTAATGTGTATGATTCCACTGAGATAAACTATTTCCTCTCGGACGATTTGTGTGCTTAGAGGTAACTATGATGCTAGGTTGTGCCCACCCGTCCTCCCCAAAAAGGAATAAATAATGCTACTCAGGGGTTGCATACCATTACAAAGAGAATCTGCATGTTTTTCATGATTGATAACAATGAAATATCTTTGTTGCCAAGTCTTCTCTTAGTACTCTAACAATGAGGCTGGAAATCTATTATGAATCTCATGTAGGCCTTCCCTTAATTTTGCATGAAGTTTAAAAATCCTTGTAGCATCATTAGGATATATCAATATAGAACATTACTCTGGAATCTGCTTCTCTTCCATTTTGAGCATGAATGTCATTGATGTGATAACTCTTTGATCTTTTCAGTGGTCACACTTATTGGGTGGAATTTTCAGCGAGACAAATCAAAGTGAGTTAGCCGCTTTCGCCTCGTATGCACTTGCATTTCCTGGAAGTTTTTTGGCCCTTGTAGACACTTATGATGTAAGTACAACTTGTGGACATATTCTTTTCCTCTGTATTCTGTGATATTTGGCTTGGCCATCTAAAACTATACACATGGATTTTGTAGAGACAAAACTTAGTCAATAATCTTACTTTGAAAGAGAAAAGGGTACTCGTCATGATATTTATATATCAGGCTAGACATATAATCTTTTTGTATTGGAAGTTCGAAATAATATTCAGCTAGTAATGTTGTTTCGATTAAGTTGTACTTATGCTGCATCCCCCTTTGTTCTTCATTTACAATGTGCTCTTTGATAACGTTTGAACGTACTTTAACAGGTCATGAGAAGTGGTCTTCCAAATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGGGTAAGCTGTTTGCATGATGAATTCTATTTAGATTGTAAAATTGCCTTTCTTTTATGCATGTCTTGGCCTCATGTGATCCTTAATATTCCGGAAGGGGAATGGTATGCCAACTAGAATTCCTAATTTTTCAATTTTGTTAATATGATAGTTTTAAACTTGTGTTATTTTGTTTTGTTCATGAACGTGAAAGAATAACTAGTCTAGAATGAAATCCTTGGATTTTGAAACAGCTAAGTGTGAATCTGTCCCCCACATCCACCTTTTAATACAGCAAGAGGTGCAAACACGCAAAGTTGTCCAGGGTCATCAATGGTTCTAGGACCTATTGTCCATGAGATACTTCCATCCTAGTTTGAGAATCATGTGCCATTCCTCTTAGAGTTTTCATGATGATATGTAATTTCATTTATTTTAATTATATATGTGTGGACCTAGCAAGGGAGGGTTAACCTAGTGGAAAGGAAAGGACTCTCCACATCAACCTTGAGGTTGGAGTTCAAGTTACCTATGGAACAAAGTAGGAACCGGTGATTATCGAGGCCTGGGCAAAAGGGGTTCCTGGTGGGGAGGGAGGAAGATAGTTGTCCATAGCTAAAAGAAGGTTTATATATGTGGACCTCGTTGATTAGATGAACCACACATGTACTTAAACATATACTTTCTTCAGACAATCTTGGTGTGTTATTAATGAAAGGTATTTACTTATCAAAAAAACGGAACGCACCTCTTATTTACAATTGATGGTGCAGAACCTTTCTATTTCATAATCACACAAGATATATACATTTTCTTAACGAAGAGCAATATAGATATCTCCCCTCCTTGTCCTAAACAATAAATTCATTTTTGAGCAAATTTGTGGGATTACACTGGGTATGTTGTTGTATTTCTTTAAGCTTGAATTATTACTATGTTTAAACTAGTCTTTTTCTACTTTCTAATGGTAATTTTCTAGTGTATTTTCTCTCTTTTGCACTCGCCCTGTATTTTGTTTTCAGCCTATTTAGTCTTTACATACTATTATGCAGGTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGA</genome_strand>
        <mrna_strand>GTTTATTGCTAATTTTAAATTTACTGAGGATGAGATAGCTTTCATCAGGTCATCGTTGCCATCGTCATGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCTTCTTTGAATACCTTCGAAGACTTGACTGTTCAGATATTGAGATATATTCTATTTCTGAAGGATCAGTAGTTTTTCCCAAGGTACCGCTGATGAGGATTGAAGGACCAGTTGCT........................................................................................................................GTGGTTCAACTACTGGAAACACCATTTGTAAACCTCATAAATTATGCATCACTAGTTACTACTAATGCTGCAAGACACCGTTTCGTTGCTGGAAGGTCCAAAATATTGCTTGAATTTGGGCTTAGGAGAGCACAG................................................................................GGTCCTGATGGTGGTATATCAGCATCCAAGTATTGCTACATGGGTGGATTTGATGCGACAAG...........................................................................................................................................................................................................................................................................................................................................................CAATGTGGCAGCTGGAAAGCTGTTTGGAATCCCACTCCGTGGGACACATTCCCATGCCTTTGTTAGCTCATTTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCAGATGAGATCATAGAGAAATCACTTCAACATCATAATGGTTCTAGTGTTTGTGAGGATTTTGTTAGTCTGGTACAGACATGGCTTGATAAATTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCACACTTATTGGGTGGAATTTTCAGCGAGACAAATCAAAGTGAGTTAGCCGCTTTCGCCTCGTATGCACTTGCATTTCCTGGAAGTTTTTTGGCCCTTGTAGACACTTATGAT...............................................................................................................................................................................................................................................................................................................GTCATGAGAAGTGGTCTTCCAAATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236639" ref_strand="+" ref_description="SGN-E236639 [cLED-13-H20]">
      <seq>ttcaacatcataatggttctagtgtttgtgaggattttgttagtctggtacagacatggcttgataaattaaagtggtcacacttattgggtggaattttcagcgagacaaatcaaagtgagttagccgctttcgcctcgtatgcacttgcatttcctggaagttttttggcccttgtagacacttatgatgtcatgagaagtggtcttccaaatttttgtgcagttgctcttgcacttaatgatttggggtataaagcagtgggcattagactagactctggtgatcttgcttatcagtcatgtgaagctaggaaattcttttgtgctattgagaaagaatttggattgcctggttttgcaaagacgagtatcacagctagcaatgatcttaatgaagaaactctggatgcactaaataaacaaggtcacgaggttgatgcatttggtattggtactcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="91861" stop="94780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92161" g_stop="92234" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92235" i_stop="93094" i_length="860">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93095" g_stop="93211" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="191" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93212" i_stop="93514" i_length="303">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93515" g_stop="93573" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="250" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93574" i_stop="94601" i_length="1028">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94602" g_stop="94780" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="429" r_length="179" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E236639" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92161" e_stop="92234"/>
          <exon e_start="93095" e_stop="93211"/>
          <exon e_start="93515" e_stop="93573"/>
          <exon e_start="94602" e_stop="94780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACATCATAATGGTTCTAGTGTTTGTGAGGATTTTGTTAGTCTGGTACAGACATGGCTTGATAAATTAAAGGTATTAATCATCTCATTCTTTTGATGCACTAGTTAGATCATCAAAAAAAAAAAAATTATTGAAGTCTTCCATTTGATTTTTTTTCTTGGAATCTGACCATTTCGGTTTATGCATTCTGATAAATCATATTGGTTCTCTATATTGGTATCACCTTTTTCATTTCAAATATCATTTAGCGTTGACTTCAATTTTCACCTTTTCATTTCAATATACTGAACTAAGCTCCTAGTCTTCCTTACCAAACCTGCTCAAAATCCACACCGTCAAGAGCATATGTGGTTTGAGTGACTGTCAGAGTGTCAATTCTTGTCAGTGTTTAATAAAGTAGGCCTAACATAGAAAACCTGAGGGAGTTTATGTTACAATTTGATTGCCAAAAGGGAGTATGATGTATAATTCCTTCATTTAATTCTGCTTAACCCCTATGGATAGCTGAACTCGTAGCCAGAATACTGGACATGTGCCTAATGTGTATGATTCCACTGAGATAAACTATTTCCTCTCGGACGATTTGTGTGCTTAGAGGTAACTATGATGCTAGGTTGTGCCCACCCGTCCTCCCCAAAAAGGAATAAATAATGCTACTCAGGGGTTGCATACCATTACAAAGAGAATCTGCATGTTTTTCATGATTGATAACAATGAAATATCTTTGTTGCCAAGTCTTCTCTTAGTACTCTAACAATGAGGCTGGAAATCTATTATGAATCTCATGTAGGCCTTCCCTTAATTTTGCATGAAGTTTAAAAATCCTTGTAGCATCATTAGGATATATCAATATAGAACATTACTCTGGAATCTGCTTCTCTTCCATTTTGAGCATGAATGTCATTGATGTGATAACTCTTTGATCTTTTCAGTGGTCACACTTATTGGGTGGAATTTTCAGCGAGACAAATCAAAGTGAGTTAGCCGCTTTCGCCTCGTATGCACTTGCATTTCCTGGAAGTTTTTTGGCCCTTGTAGACACTTATGATGTAAGTACAACTTGTGGACATATTCTTTTCCTCTGTATTCTGTGATATTTGGCTTGGCCATCTAAAACTATACACATGGATTTTGTAGAGACAAAACTTAGTCAATAATCTTACTTTGAAAGAGAAAAGGGTACTCGTCATGATATTTATATATCAGGCTAGACATATAATCTTTTTGTATTGGAAGTTCGAAATAATATTCAGCTAGTAATGTTGTTTCGATTAAGTTGTACTTATGCTGCATCCCCCTTTGTTCTTCATTTACAATGTGCTCTTTGATAACGTTTGAACGTACTTTAACAGGTCATGAGAAGTGGTCTTCCAAATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGGGTAAGCTGTTTGCATGATGAATTCTATTTAGATTGTAAAATTGCCTTTCTTTTATGCATGTCTTGGCCTCATGTGATCCTTAATATTCCGGAAGGGGAATGGTATGCCAACTAGAATTCCTAATTTTTCAATTTTGTTAATATGATAGTTTTAAACTTGTGTTATTTTGTTTTGTTCATGAACGTGAAAGAATAACTAGTCTAGAATGAAATCCTTGGATTTTGAAACAGCTAAGTGTGAATCTGTCCCCCACATCCACCTTTTAATACAGCAAGAGGTGCAAACACGCAAAGTTGTCCAGGGTCATCAATGGTTCTAGGACCTATTGTCCATGAGATACTTCCATCCTAGTTTGAGAATCATGTGCCATTCCTCTTAGAGTTTTCATGATGATATGTAATTTCATTTATTTTAATTATATATGTGTGGACCTAGCAAGGGAGGGTTAACCTAGTGGAAAGGAAAGGACTCTCCACATCAACCTTGAGGTTGGAGTTCAAGTTACCTATGGAACAAAGTAGGAACCGGTGATTATCGAGGCCTGGGCAAAAGGGGTTCCTGGTGGGGAGGGAGGAAGATAGTTGTCCATAGCTAAAAGAAGGTTTATATATGTGGACCTCGTTGATTAGATGAACCACACATGTACTTAAACATATACTTTCTTCAGACAATCTTGGTGTGTTATTAATGAAAGGTATTTACTTATCAAAAAAACGGAACGCACCTCTTATTTACAATTGATGGTGCAGAACCTTTCTATTTCATAATCACACAAGATATATACATTTTCTTAACGAAGAGCAATATAGATATCTCCCCTCCTTGTCCTAAACAATAAATTCATTTTTGAGCAAATTTGTGGGATTACACTGGGTATGTTGTTGTATTTCTTTAAGCTTGAATTATTACTATGTTTAAACTAGTCTTTTTCTACTTTCTAATGGTAATTTTCTAGTGTATTTTCTCTCTTTTGCACTCGCCCTGTATTTTGTTTTCAGCCTATTTAGTCTTTACATACTATTATGCAGGTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAAGTAA</genome_strand>
        <mrna_strand>TTCAACATCATAATGGTTCTAGTGTTTGTGAGGATTTTGTTAGTCTGGTACAGACATGGCTTGATAAATTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCACACTTATTGGGTGGAATTTTCAGCGAGACAAATCAAAGTGAGTTAGCCGCTTTCGCCTCGTATGCACTTGCATTTCCTGGAAGTTTTTTGGCCCTTGTAGACACTTATGAT...............................................................................................................................................................................................................................................................................................................GTCATGAGAAGTGGTCTTCCAAATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAAGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240891" ref_strand="+" ref_description="SGN-E240891 [cLED-24-E21]">
      <seq>ttcaacatcataatggttctagtgtttgtgaggattttgttagtctggtacagacatggcttgataaattaaagtggtcacacttattgggtggaattttcagcgagacaaatcaaagtgagttagccgctttcgcctcgtatgcacttgcatttcctggaagttttttggcccttgtagacacttatgatgtcatgagaagtggtcttccaaatttttgtgcagttgctcttgcacttaatgatttggggtataaagcagtgggcattagactagactctggtgatcttgcttatcagtcatgtgaagctaggaaattcttttgtgctattgagaaagaatttggattgcctggttttgcaaagacgagtatcacagctagcaatgatcttaatgaagaaactctggatgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="91861" stop="94780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92161" g_stop="92234" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92235" i_stop="93094" i_length="860">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93095" g_stop="93211" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="191" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93212" i_stop="93514" i_length="303">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93515" g_stop="93573" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="250" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93574" i_stop="94601" i_length="1028">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94602" g_stop="94765" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="414" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-E240891" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92161" e_stop="92234"/>
          <exon e_start="93095" e_stop="93211"/>
          <exon e_start="93515" e_stop="93573"/>
          <exon e_start="94602" e_stop="94765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACATCATAATGGTTCTAGTGTTTGTGAGGATTTTGTTAGTCTGGTACAGACATGGCTTGATAAATTAAAGGTATTAATCATCTCATTCTTTTGATGCACTAGTTAGATCATCAAAAAAAAAAAAATTATTGAAGTCTTCCATTTGATTTTTTTTCTTGGAATCTGACCATTTCGGTTTATGCATTCTGATAAATCATATTGGTTCTCTATATTGGTATCACCTTTTTCATTTCAAATATCATTTAGCGTTGACTTCAATTTTCACCTTTTCATTTCAATATACTGAACTAAGCTCCTAGTCTTCCTTACCAAACCTGCTCAAAATCCACACCGTCAAGAGCATATGTGGTTTGAGTGACTGTCAGAGTGTCAATTCTTGTCAGTGTTTAATAAAGTAGGCCTAACATAGAAAACCTGAGGGAGTTTATGTTACAATTTGATTGCCAAAAGGGAGTATGATGTATAATTCCTTCATTTAATTCTGCTTAACCCCTATGGATAGCTGAACTCGTAGCCAGAATACTGGACATGTGCCTAATGTGTATGATTCCACTGAGATAAACTATTTCCTCTCGGACGATTTGTGTGCTTAGAGGTAACTATGATGCTAGGTTGTGCCCACCCGTCCTCCCCAAAAAGGAATAAATAATGCTACTCAGGGGTTGCATACCATTACAAAGAGAATCTGCATGTTTTTCATGATTGATAACAATGAAATATCTTTGTTGCCAAGTCTTCTCTTAGTACTCTAACAATGAGGCTGGAAATCTATTATGAATCTCATGTAGGCCTTCCCTTAATTTTGCATGAAGTTTAAAAATCCTTGTAGCATCATTAGGATATATCAATATAGAACATTACTCTGGAATCTGCTTCTCTTCCATTTTGAGCATGAATGTCATTGATGTGATAACTCTTTGATCTTTTCAGTGGTCACACTTATTGGGTGGAATTTTCAGCGAGACAAATCAAAGTGAGTTAGCCGCTTTCGCCTCGTATGCACTTGCATTTCCTGGAAGTTTTTTGGCCCTTGTAGACACTTATGATGTAAGTACAACTTGTGGACATATTCTTTTCCTCTGTATTCTGTGATATTTGGCTTGGCCATCTAAAACTATACACATGGATTTTGTAGAGACAAAACTTAGTCAATAATCTTACTTTGAAAGAGAAAAGGGTACTCGTCATGATATTTATATATCAGGCTAGACATATAATCTTTTTGTATTGGAAGTTCGAAATAATATTCAGCTAGTAATGTTGTTTCGATTAAGTTGTACTTATGCTGCATCCCCCTTTGTTCTTCATTTACAATGTGCTCTTTGATAACGTTTGAACGTACTTTAACAGGTCATGAGAAGTGGTCTTCCAAATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGGGTAAGCTGTTTGCATGATGAATTCTATTTAGATTGTAAAATTGCCTTTCTTTTATGCATGTCTTGGCCTCATGTGATCCTTAATATTCCGGAAGGGGAATGGTATGCCAACTAGAATTCCTAATTTTTCAATTTTGTTAATATGATAGTTTTAAACTTGTGTTATTTTGTTTTGTTCATGAACGTGAAAGAATAACTAGTCTAGAATGAAATCCTTGGATTTTGAAACAGCTAAGTGTGAATCTGTCCCCCACATCCACCTTTTAATACAGCAAGAGGTGCAAACACGCAAAGTTGTCCAGGGTCATCAATGGTTCTAGGACCTATTGTCCATGAGATACTTCCATCCTAGTTTGAGAATCATGTGCCATTCCTCTTAGAGTTTTCATGATGATATGTAATTTCATTTATTTTAATTATATATGTGTGGACCTAGCAAGGGAGGGTTAACCTAGTGGAAAGGAAAGGACTCTCCACATCAACCTTGAGGTTGGAGTTCAAGTTACCTATGGAACAAAGTAGGAACCGGTGATTATCGAGGCCTGGGCAAAAGGGGTTCCTGGTGGGGAGGGAGGAAGATAGTTGTCCATAGCTAAAAGAAGGTTTATATATGTGGACCTCGTTGATTAGATGAACCACACATGTACTTAAACATATACTTTCTTCAGACAATCTTGGTGTGTTATTAATGAAAGGTATTTACTTATCAAAAAAACGGAACGCACCTCTTATTTACAATTGATGGTGCAGAACCTTTCTATTTCATAATCACACAAGATATATACATTTTCTTAACGAAGAGCAATATAGATATCTCCCCTCCTTGTCCTAAACAATAAATTCATTTTTGAGCAAATTTGTGGGATTACACTGGGTATGTTGTTGTATTTCTTTAAGCTTGAATTATTACTATGTTTAAACTAGTCTTTTTCTACTTTCTAATGGTAATTTTCTAGTGTATTTTCTCTCTTTTGCACTCGCCCTGTATTTTGTTTTCAGCCTATTTAGTCTTTACATACTATTATGCAGGTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCAC</genome_strand>
        <mrna_strand>TTCAACATCATAATGGTTCTAGTGTTTGTGAGGATTTTGTTAGTCTGGTACAGACATGGCTTGATAAATTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCACACTTATTGGGTGGAATTTTCAGCGAGACAAATCAAAGTGAGTTAGCCGCTTTCGCCTCGTATGCACTTGCATTTCCTGGAAGTTTTTTGGCCCTTGTAGACACTTATGAT...............................................................................................................................................................................................................................................................................................................GTCATGAGAAGTGGTCTTCCAAATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>104</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6188" PGL_stop="3359"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6188" e_stop="6049"/>
            <exon e_start="5740" e_stop="5657"/>
            <exon e_start="5060" e_stop="4986"/>
            <exon e_start="4894" e_stop="4852"/>
            <exon e_start="4702" e_stop="4645"/>
            <exon e_start="4513" e_stop="4346"/>
            <exon e_start="4262" e_stop="4200"/>
            <exon e_start="4121" e_stop="4027"/>
            <exon e_start="3925" e_stop="3844"/>
            <exon e_start="3757" e_stop="3647"/>
            <exon e_start="3510" e_stop="3359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.632" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.737" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6188" e_stop="6049" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6048" i_stop="5741" i_length="308"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5740" e_stop="5657" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.632">
            <gDNA_intron_boundary i_start="5656" i_stop="5061" i_length="596"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5060" e_stop="4986" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="4985" i_stop="4895" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4894" e_stop="4852" e_length="43"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="0.995">
            <gDNA_intron_boundary i_start="4851" i_stop="4703" i_length="149"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4702" e_stop="4645" e_length="58"/>
          </exon>
          <intron i_serial="5" don_prob="0.737" acc_prob="0.988">
            <gDNA_intron_boundary i_start="4644" i_stop="4514" i_length="131"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="4513" e_stop="4346" e_length="168"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="4345" i_stop="4263" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="4262" e_stop="4200" e_length="63"/>
          </exon>
          <intron i_serial="7" don_prob="0.982" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4199" i_stop="4122" i_length="78"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4121" e_stop="4027" e_length="95"/>
          </exon>
          <intron i_serial="8" don_prob="0.939" acc_prob="0.975">
            <gDNA_intron_boundary i_start="4026" i_stop="3926" i_length="101"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="3925" e_stop="3844" e_length="82"/>
          </exon>
          <intron i_serial="9" don_prob="0.938" acc_prob="0.999">
            <gDNA_intron_boundary i_start="3843" i_stop="3758" i_length="86"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="3757" e_stop="3647" e_length="111"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="3646" i_stop="3511" i_length="136"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="3510" e_stop="3359" e_length="152"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6188" stop="6049"/>
              <exon start="5740" stop="5657"/>
              <exon start="5060" stop="4986"/>
              <exon start="4894" stop="4852"/>
              <exon start="4702" stop="4645"/>
              <exon start="4513" stop="4346"/>
              <exon start="4262" stop="4200"/>
              <exon start="4121" stop="4027"/>
              <exon start="3925" stop="3844"/>
              <exon start="3757" stop="3687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4481" stop="4346"/>
              <exon start="4262" stop="4200"/>
              <exon start="4121" stop="4027"/>
              <exon start="3925" stop="3844"/>
              <exon start="3757" stop="3647"/>
              <exon start="3510" stop="3359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731051" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACACAAGTAATATCAGGAAAGATAATGAAGTTGGGTGGTGGAGTGGGTTTTGGATGTCCACGCGCCGTCGCATTTCCCGGCATTTTATTCAGCCGCTGCCGACCAACATTCCGATGCTATTCCTCTTCTTCTTCTCCAG : ACCATGTATCATTTATCAAAGATGTAGCTGCAACTCAAGCACCGGAACATTTGAATGAACTTCTCAAAATCCTTCAGGTGAGAG : GTGAAGAAATAATTTCTCCTGGTGCCAAGCAAGGGCTGGTTCCTCTAGTGATTCCTCTTTCCAGAAGGAGTTCAG : ATTCTGTAACTGCACTGTTACGATGGCCAACTGCCCCATCTGG : GATGGAGATGCCGTTGGTAGAAGTGCGCAAGTATGGTGTGTGGCTATTATCTAAGAAT : GTAGATCAGTACATTCACAGGGTTTTGGCGGAAGAAGATGCAAACGGTAATCAAGAAAAAGTAGATGAATTATTCCGGATTTCAGCTGGTGCTGGAAAGAAACTTTATGAGAAGGGTGATTTTGGAGCATCAAAAATTTCAAACATAGATACTTATATATTGAAGAAG : GTTGGCTTGTTTCCAGATGTACTGGAGCGCAGAATTAAGCAACATTTTGACAATGGAGACAAT : ATTTCAGCTTTGGTGACGGGAGAATTTTATACAAAGAAGGAGCATTTTCCAGGATTTGCGCGACCTTTTGTCTTTAATGCTGAAGTTTTGCTGAA : GGTTGGGCGCAATATAGAAGCTAAAGATGCTGCTAGGGGGGCTTTAAAATCACCATGGTGGACTTTGGGTTGCGAATACCAT : GAAGTTGCTAATATGGCTGAATGGGAAGATGAACAAATTGAGTATATCAAAGAGAAAGTAACTGAGGAGGGTAGGGAAGCCGATCTAAAGAAAGGGAAGCAACCTGCTCAG : GTTGCATTGGATGAAGCTGCTTTCTTGTTGGATCTAGCTTCCATTGACGGTTCATGGGACGATTGTGCAGAAAGGATTGCTGAATGCTACAAGGAGGCGGGCCTGCATGAAGTTGCAAACTTTGTGGTTTACAGAGACTGAAATACCAGCAA</gDNA_template>
            <first_frame> H  T  S  N  I  R  K  D  N  E  V  G  W  W  S  G  F  W  M  S  T  R  R  R  I  S  R  H  F  I  Q  P  L  P  T  N  I  P  M  L  F  L  F  F  F  S  R :   P  C  I  I  Y  Q  R  C  S  C  N  S  S  T  G  T  F  E  *  T  S  Q  N  P  S  G  E  R :   *  R  N  N  F  S  W  C  Q  A  R  A  G  S  S  S  D  S  S  F  Q  K  E  F  R :   F  C  N  C  T  V  T  M  A  N  C  P  I  W  :  D  G  D  A  V  G  R  S  A  Q  V  W  C  V  A  I  I  *  E   : C  R  S  V  H  S  Q  G  F  G  G  R  R  C  K  R  *  S  R  K  S  R  *  I  I  P  D  F  S  W  C  W  K  E  T  L  *  E  G  *  F  W  S  I  K  N  F  K  H  R  Y  L  Y  I  E  E   : G  W  L  V  S  R  C  T  G  A  Q  N  *  A  T  F  *  Q  W  R  Q   : Y  F  S  F  G  D  G  R  I  L  Y  K  E  G  A  F  S  R  I  C  A  T  F  C  L  *  C  *  S  F  A  E  :  G  W  A  Q  Y  R  S  *  R  C  C  *  G  G  F  K  I  T  M  V  D  F  G  L  R  I  P   : *  S  C  *  Y  G  *  M  G  R  *  T  N  *  V  Y  Q  R  E  S  N  *  G  G  *  G  S  R  S  K  E  R  E  A  T  C  S   : G  C  I  G  *  S  C  F  L  V  G  S  S  F  H  *  R  F  M  G  R  L  C  R  K  D  C  *  M  L  Q  G  G  G  P  A  *  S  C  K  L  C  G  L  Q  R  L  K  Y  Q  Q </first_frame>
            <second_frame>  T  Q  V  I  S  G  K  I  M  K  L  G  G  G  V  G  F  G  C  P  R  A  V  A  F  P  G  I  L  F  S  R  C  R  P  T  F  R  C  Y  S  S  S  S  S  P   : D  H  V  S  F  I  K  D  V  A  A  T  Q  A  P  E  H  L  N  E  L  L  K  I  L  Q  V  R   : G  E  E  I  I  S  P  G  A  K  Q  G  L  V  P  L  V  I  P  L  S  R  R  S  S   : D  S  V  T  A  L  L  R  W  P  T  A  P  S  G :   M  E  M  P  L  V  E  V  R  K  Y  G  V  W  L  L  S  K  N  :  V  D  Q  Y  I  H  R  V  L  A  E  E  D  A  N  G  N  Q  E  K  V  D  E  L  F  R  I  S  A  G  A  G  K  K  L  Y  E  K  G  D  F  G  A  S  K  I  S  N  I  D  T  Y  I  L  K  K  :  V  G  L  F  P  D  V  L  E  R  R  I  K  Q  H  F  D  N  G  D  N  :  I  S  A  L  V  T  G  E  F  Y  T  K  K  E  H  F  P  G  F  A  R  P  F  V  F  N  A  E  V  L  L  K :   V  G  R  N  I  E  A  K  D  A  A  R  G  A  L  K  S  P  W  W  T  L  G  C  E  Y  H  :  E  V  A  N  M  A  E  W  E  D  E  Q  I  E  Y  I  K  E  K  V  T  E  E  G  R  E  A  D  L  K  K  G  K  Q  P  A  Q  :  V  A  L  D  E  A  A  F  L  L  D  L  A  S  I  D  G  S  W  D  D  C  A  E  R  I  A  E  C  Y  K  E  A  G  L  H  E  V  A  N  F  V  V  Y  R  D  *  N  T  S   </second_frame>
            <third_frame>   H  K  *  Y  Q  E  R  *  *  S  W  V  V  E  W  V  L  D  V  H  A  P  S  H  F  P  A  F  Y  S  A  A  A  D  Q  H  S  D  A  I  P  L  L  L  L  Q  :  T  M  Y  H  L  S  K  M  *  L  Q  L  K  H  R  N  I  *  M  N  F  S  K  S  F  R  *  E  :  V  K  K  *  F  L  L  V  P  S  K  G  W  F  L  *  *  F  L  F  P  E  G  V  Q  :  I  L  *  L  H  C  Y  D  G  Q  L  P  H  L   : G  W  R  C  R  W  *  K  C  A  S  M  V  C  G  Y  Y  L  R  M :   *  I  S  T  F  T  G  F  W  R  K  K  M  Q  T  V  I  K  K  K  *  M  N  Y  S  G  F  Q  L  V  L  E  R  N  F  M  R  R  V  I  L  E  H  Q  K  F  Q  T  *  I  L  I  Y  *  R  R :   L  A  C  F  Q  M  Y  W  S  A  E  L  S  N  I  L  T  M  E  T  I :   F  Q  L  W  *  R  E  N  F  I  Q  R  R  S  I  F  Q  D  L  R  D  L  L  S  L  M  L  K  F  C  *   : R  L  G  A  I  *  K  L  K  M  L  L  G  G  L  *  N  H  H  G  G  L  W  V  A  N  T  M :   K  L  L  I  W  L  N  G  K  M  N  K  L  S  I  S  K  R  K  *  L  R  R  V  G  K  P  I  *  R  K  G  S  N  L  L  R :   L  H  W  M  K  L  L  S  C  W  I  *  L  P  L  T  V  H  G  T  I  V  Q  K  G  L  L  N  A  T  R  R  R  A  C  M  K  L  Q  T  L  W  F  T  E  T  E  I  P  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6187" stop="6049"/>
                    <exon start="5740" stop="5657"/>
                    <exon start="5060" stop="4986"/>
                    <exon start="4894" stop="4852"/>
                    <exon start="4702" stop="4645"/>
                    <exon start="4513" stop="4346"/>
                    <exon start="4262" stop="4200"/>
                    <exon start="4121" stop="4027"/>
                    <exon start="3925" stop="3844"/>
                    <exon start="3757" stop="3647"/>
                    <exon start="3510" stop="3370"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQVISGKIMKLGGGVGFGCPRAVAFPGILFSRCRPTFRCYSSSSSPDHVSFIKDVAATQAPEHLNELLKILQVRGEEIISPGAKQGLVPLVIPLSRRSSDSVTALLRWPTAPSGMEMPLVEVRKYGVWLLSKNVDQYIHRVLAEEDANGNQEKVDELFRISAGAGKKLYEKGDFGASKISNIDTYILKKVGLFPDVLERRIKQHFDNGDNISALVTGEFYTKKEHFPGFARPFVFNAEVLLKVGRNIEAKDAARGALKSPWWTLGCEYHEVANMAEWEDEQIEYIKEKVTEEGREADLKKGKQPAQVALDEAAFLLDLASIDGSWDDCAERIAECYKEAGLHEVANFVVYRD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="15515" PGL_stop="14090"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15515" e_stop="14969"/>
            <exon e_start="14838" e_stop="14269"/>
            <exon e_start="14175" e_stop="14090"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.797" acc_prob="0.991" e_score="0.998"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15515" e_stop="14969" e_length="547"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14968" i_stop="14839" i_length="130"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="14838" e_stop="14269" e_length="570"/>
          </exon>
          <intron i_serial="2" don_prob="0.797" acc_prob="0.991">
            <gDNA_intron_boundary i_start="14268" i_stop="14176" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="14175" e_stop="14090" e_length="86"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15515" stop="14972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15514" stop="14969"/>
              <exon start="14838" stop="14605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15514" stop="14969"/>
              <exon start="14838" stop="14683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15514" stop="14969"/>
              <exon start="14838" stop="14701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15513" stop="14969"/>
              <exon start="14838" stop="14728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15513" stop="14969"/>
              <exon start="14838" stop="14739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15513" stop="14969"/>
              <exon start="14838" stop="14764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15513" stop="15001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15510" stop="15188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15509" stop="14969"/>
              <exon start="14838" stop="14612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15508" stop="14969"/>
              <exon start="14838" stop="14805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15500" stop="14969"/>
              <exon start="14838" stop="14731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15491" stop="14969"/>
              <exon start="14838" stop="14604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15454" stop="14969"/>
              <exon start="14838" stop="14789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15440" stop="14969"/>
              <exon start="14838" stop="14726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15429" stop="14969"/>
              <exon start="14838" stop="14576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15418" stop="14969"/>
              <exon start="14838" stop="14729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15309" stop="14969"/>
              <exon start="14838" stop="14445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15147" stop="14969"/>
              <exon start="14838" stop="14510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14697" stop="14269"/>
              <exon start="14175" stop="14090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14696" stop="14272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227096" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCAGTTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAG : GTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCTTCAATTGTTGGTCTGAAATAGCGCGCAGTGGAGATTCCAATCTTATCGTTAATAAACCGCCGGTTCTGGACCGTTGGTTTCCTGAATTTGTTGCTAGTCCAATTCATGTACCTTTATCTAATGAACATGTCCATGATGAATTTGATCTGCCTTTGTTAGAAGAAAGAGTTTTCCATTTTAGCAAGGAGAATATAGCTCAACTCAAAGCCAAAGCCAATTCTGAATATGGAAACGACCAAAAGATTTGTATCTCTTCATTACAAGCCGTTTTGGCTCATATCTGGCAATCTGTTATCCGTTGCCGTTGTGGTACGAACGCTAACGAAAAATTTAGTTTCAAATTACTTATAGGCGCAAGGACAAGGCTCCAGCCGCATTTACCTGAAGGCTATTTTGGAAATGCGGTACATTTTGTAAACGTGACAACCACCGCTAGGGAGATGTTGGAGCATGATTCAG : GTTGGGCTGCTATGCAAATAAATAAGGTGGTATCTACGCAAACTCATGAAGAGGTTATGAATTTTTATCAAAATTGGGTGAAAAAT</gDNA_template>
            <first_frame> S  Q  F  S  F  C  I  K  F  Y  I  I  Y  I  *  V  C  E  P  *  L  I  K  Y  K  *  I  S  P  Q  F  S  F  C  N  K  Y  S  K  M  T  K  L  R  V  V  S  V  C  V  I  R  S  Q  K  F  S  S  S  K  K  I  Q  L  T  P  W  D  L  Q  L  L  T  V  D  P  I  Q  K  G  L  F  F  R  K  P  N  P  E  Q  P  K  E  L  A  K  S  S  S  E  I  I  N  R  L  K  V  S  L  S  D  T  L  N  H  F  P  L  L  A  G  R  L  I  A  S  K  N  S  D  G  T  S  S  F  F  V  D  C  N  N  E  G  A  E  F  N  Y  V  T  A  P  D  L  T  V  D  D  I  L  E  Q  T  Y  V  P  K  I  V  K  Y  F  F  P  L  N  G  V  C  N  Y  E   : G  V  S  K  P  L  L  A  V  Q  V  T  E  L  V  D  G  F  F  I  G  C  T  I  N  H  C  V  A  D  G  T  S  F  W  H  F  F  N  C  W  S  E  I  A  R  S  G  D  S  N  L  I  V  N  K  P  P  V  L  D  R  W  F  P  E  F  V  A  S  P  I  H  V  P  L  S  N  E  H  V  H  D  E  F  D  L  P  L  L  E  E  R  V  F  H  F  S  K  E  N  I  A  Q  L  K  A  K  A  N  S  E  Y  G  N  D  Q  K  I  C  I  S  S  L  Q  A  V  L  A  H  I  W  Q  S  V  I  R  C  R  C  G  T  N  A  N  E  K  F  S  F  K  L  L  I  G  A  R  T  R  L  Q  P  H  L  P  E  G  Y  F  G  N  A  V  H  F  V  N  V  T  T  T  A  R  E  M  L  E  H  D  S   : G  W  A  A  M  Q  I  N  K  V  V  S  T  Q  T  H  E  E  V  M  N  F  Y  Q  N  W  V  K  N </first_frame>
            <second_frame>  L  S  L  A  S  A  S  N  F  I  L  Y  I  Y  R  Y  V  S  H  D  S  L  S  I  S  E  F  L  L  S  L  A  F  A  T  N  I  Q  R  *  Q  N  F  E  *  Y  Q  Y  V  *  L  G  P  K  N  S  L  Q  A  K  K  S  S  *  L  H  G  I  F  N  S  S  Q  *  I  L  S  K  K  D  Y  F  S  V  N  Q  I  L  S  N  L  K  S  *  Q  N  H  H  Q  K  L  L  I  A  *  K  F  H  S  L  I  L  *  I  I  F  L  F  S  R  V  D  L  L  L  V  K  I  V  M  A  P  H  L  S  L  *  I  A  T  M  K  E  L  S  S  I  T  S  L  H  L  I  *  L  W  M  I  S  W  N  K  L  T  C  Q  R  L  S  S  I  S  S  H  S  M  E  Y  A  T  M  K  :  V  F  Q  N  H  C  W  L  C  K  S  Q  S  *  W  M  D  S  S  L  V  A  L  S  I  I  V  *  R  M  G  L  H  F  G  I  S  S  I  V  G  L  K  *  R  A  V  E  I  P  I  L  S  L  I  N  R  R  F  W  T  V  G  F  L  N  L  L  L  V  Q  F  M  Y  L  Y  L  M  N  M  S  M  M  N  L  I  C  L  C  *  K  K  E  F  S  I  L  A  R  R  I  *  L  N  S  K  P  K  P  I  L  N  M  E  T  T  K  R  F  V  S  L  H  Y  K  P  F  W  L  I  S  G  N  L  L  S  V  A  V  V  V  R  T  L  T  K  N  L  V  S  N  Y  L  *  A  Q  G  Q  G  S  S  R  I  Y  L  K  A  I  L  E  M  R  Y  I  L  *  T  *  Q  P  P  L  G  R  C  W  S  M  I  Q  :  V  G  L  L  C  K  *  I  R  W  Y  L  R  K  L  M  K  R  L  *  I  F  I  K  I  G  *  K   </second_frame>
            <third_frame>   S  V  *  L  L  H  Q  I  L  Y  Y  I  Y  I  G  M  *  A  M  T  H  *  V  *  V  N  F  S  S  V  *  L  L  Q  Q  I  F  K  D  D  K  T  S  S  S  I  S  M  C  N  *  V  P  K  I  L  F  K  Q  K  N  P  V  N  S  M  G  S  S  T  P  H  S  R  S  Y  P  K  R  I  I  F  P  *  T  K  S  *  A  T  *  R  V  S  K  I  I  I  R  N  Y  *  S  P  K  S  F  T  L  *  Y  S  K  S  F  S  S  S  R  G  S  T  Y  C  *  *  K  *  *  W  H  L  I  F  L  C  R  L  Q  Q  *  R  S  *  V  Q  L  R  H  C  T  *  F  N  C  G  *  Y  L  G  T  N  L  R  A  K  D  C  Q  V  F  L  P  T  Q  W  S  M  Q  L  *  R :   C  F  K  T  I  V  G  C  A  S  H  R  A  S  G  W  I  L  H  W  L  H  Y  Q  S  L  C  S  G  W  D  F  I  L  A  F  L  Q  L  L  V  *  N  S  A  Q  W  R  F  Q  S  Y  R  *  *  T  A  G  S  G  P  L  V  S  *  I  C  C  *  S  N  S  C  T  F  I  *  *  T  C  P  *  *  I  *  S  A  F  V  R  R  K  S  F  P  F  *  Q  G  E  Y  S  S  T  Q  S  Q  S  Q  F  *  I  W  K  R  P  K  D  L  Y  L  F  I  T  S  R  F  G  S  Y  L  A  I  C  Y  P  L  P  L  W  Y  E  R  *  R  K  I  *  F  Q  I  T  Y  R  R  K  D  K  A  P  A  A  F  T  *  R  L  F  W  K  C  G  T  F  C  K  R  D  N  H  R  *  G  D  V  G  A  *  F  R :   L  G  C  Y  A  N  K  *  G  G  I  Y  A  N  S  *  R  G  Y  E  F  L  S  K  L  G  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15437" stop="14969"/>
                    <exon start="14838" stop="14269"/>
                    <exon start="14175" stop="14090"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1125</number_coding_nucleotides>
                  <number_encoded_amino_acids>375</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISPQFSFCNKYSKMTKLRVVSVCVIRSQKFSSSKKIQLTPWDLQLLTVDPIQKGLFFRKPNPEQPKELAKSSSEIINRLKVSLSDTLNHFPLLAGRLIASKNSDGTSSFFVDCNNEGAEFNYVTAPDLTVDDILEQTYVPKIVKYFFPLNGVCNYEGVSKPLLAVQVTELVDGFFIGCTINHCVADGTSFWHFFNCWSEIARSGDSNLIVNKPPVLDRWFPEFVASPIHVPLSNEHVHDEFDLPLLEERVFHFSKENIAQLKAKANSEYGNDQKICISSLQAVLAHIWQSVIRCRCGTNANEKFSFKLLIGARTRLQPHLPEGYFGNAVHFVNVTTTAREMLEHDSGWAAMQINKVVSTQTHEEVMNFYQNWVKN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="20513" PGL_stop="21132"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20513" e_stop="20818"/>
            <exon e_start="20940" e_stop="21132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="0.941"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="20513" e_stop="20818" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20819" i_stop="20939" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="0.917">
            <gDNA_exon_boundary e_start="20940" e_stop="21132" e_length="193"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20513" stop="20818"/>
              <exon start="20940" stop="21132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267764" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCCGATACTTACTCCATTTGGAGCAGAGCCATGCGAATCCAATTACTTGGGAAGAACAAGCTGGGTATTGTTGATGGTAGCTGGAAAAAGGAGGATTTCGGAACTAAATTGGGGCATTAATGGGATCGATGTAATGCGATTGTTCAAGGCTGGATTATGAGCTCTGTAACTCAGGATTTGCATGTAGGTATTGTTTATGCAACGAGTGCACAAGCTGTTTGGGAGGATCTTCGAGAGCGTTTTGACAAAGTAAATGCTTCAAGGATCTATCAATCGCATAAAGCCATAGCCACCACTGTACAAG : ACAAAAATTGATGCAATTTTTGATGGATTTGAATGAAACCTATGAACAATCACGTAGTCAGATATTGATGGTTGAACCTACGCCCACTATTAACAAAGTTTATGCTATGCTTGTTGAGAGAGAGAGCCAAAGATCAATCATATCTACATCTATGAGTGAAGAAGGTACAGATTTAACTGTTCTCATGGCAGGA</gDNA_template>
            <first_frame> D  P  I  L  T  P  F  G  A  E  P  C  E  S  N  Y  L  G  R  T  S  W  V  L  L  M  V  A  G  K  R  R  I  S  E  L  N  W  G  I  N  G  I  D  V  M  R  L  F  K  A  G  L  *  A  L  *  L  R  I  C  M  *  V  L  F  M  Q  R  V  H  K  L  F  G  R  I  F  E  S  V  L  T  K  *  M  L  Q  G  S  I  N  R  I  K  P  *  P  P  L  Y  K  :  T  K  I  D  A  I  F  D  G  F  E  *  N  L  *  T  I  T  *  S  D  I  D  G  *  T  Y  A  H  Y  *  Q  S  L  C  Y  A  C  *  E  R  E  P  K  I  N  H  I  Y  I  Y  E  *  R  R  Y  R  F  N  C  S  H  G  R  </first_frame>
            <second_frame>  I  R  Y  L  L  H  L  E  Q  S  H  A  N  P  I  T  W  E  E  Q  A  G  Y  C  *  W  *  L  E  K  G  G  F  R  N  *  I  G  A  L  M  G  S  M  *  C  D  C  S  R  L  D  Y  E  L  C  N  S  G  F  A  C  R  Y  C  L  C  N  E  C  T  S  C  L  G  G  S  S  R  A  F  *  Q  S  K  C  F  K  D  L  S  I  A  *  S  H  S  H  H  C  T  R :   Q  K  L  M  Q  F  L  M  D  L  N  E  T  Y  E  Q  S  R  S  Q  I  L  M  V  E  P  T  P  T  I  N  K  V  Y  A  M  L  V  E  R  E  S  Q  R  S  I  I  S  T  S  M  S  E  E  G  T  D  L  T  V  L  M  A  G </second_frame>
            <third_frame>   S  D  T  Y  S  I  W  S  R  A  M  R  I  Q  L  L  G  K  N  K  L  G  I  V  D  G  S  W  K  K  E  D  F  G  T  K  L  G  H  *  W  D  R  C  N  A  I  V  Q  G  W  I  M  S  S  V  T  Q  D  L  H  V  G  I  V  Y  A  T  S  A  Q  A  V  W  E  D  L  R  E  R  F  D  K  V  N  A  S  R  I  Y  Q  S  H  K  A  I  A  T  T  V  Q   : D  K  N  *  C  N  F  *  W  I  *  M  K  P  M  N  N  H  V  V  R  Y  *  W  L  N  L  R  P  L  L  T  K  F  M  L  C  L  L  R  E  R  A  K  D  Q  S  Y  L  H  L  *  V  K  K  V  Q  I  *  L  F  S  W  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20796" stop="20818"/>
                    <exon start="20940" stop="21132"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHSHHCTRQKLMQFLMDLNETYEQSRSQILMVEPTPTINKVYAMLVERESQRSIISTSMSEEGTDLTVLMAG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20635" stop="20818"/>
                    <exon start="20940" stop="20950"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WDRCNAIVQGWIMSSVTQDLHVGIVYATSAQAVWEDLRERFDKVNASRIYQSHKAIATTVQDKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="48851" PGL_stop="52775"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48851" e_stop="49017"/>
            <exon e_start="49213" e_stop="49335"/>
            <exon e_start="49576" e_stop="49713"/>
            <exon e_start="49832" e_stop="49930"/>
            <exon e_start="50019" e_stop="50322"/>
            <exon e_start="50404" e_stop="50627"/>
            <exon e_start="50714" e_stop="50800"/>
            <exon e_start="52214" e_stop="52775"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.646" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48851" e_stop="49017" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.871">
            <gDNA_intron_boundary i_start="49018" i_stop="49212" i_length="195"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49213" e_stop="49335" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.646">
            <gDNA_intron_boundary i_start="49336" i_stop="49575" i_length="240"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49576" e_stop="49713" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.864" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49714" i_stop="49831" i_length="118"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49832" e_stop="49930" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.886" acc_prob="0.985">
            <gDNA_intron_boundary i_start="49931" i_stop="50018" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50019" e_stop="50322" e_length="304"/>
          </exon>
          <intron i_serial="5" don_prob="0.947" acc_prob="0.964">
            <gDNA_intron_boundary i_start="50323" i_stop="50403" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="50404" e_stop="50627" e_length="224"/>
          </exon>
          <intron i_serial="6" don_prob="0.945" acc_prob="0.957">
            <gDNA_intron_boundary i_start="50628" i_stop="50713" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="50714" e_stop="50800" e_length="87"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="50801" i_stop="52213" i_length="1413"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="52214" e_stop="52775" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48851" stop="49017"/>
              <exon start="49213" stop="49335"/>
              <exon start="49576" stop="49713"/>
              <exon start="49832" stop="49930"/>
              <exon start="50019" stop="50144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48852" stop="49017"/>
              <exon start="49213" stop="49335"/>
              <exon start="49576" stop="49670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280824" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48873" stop="49017"/>
              <exon start="49213" stop="49335"/>
              <exon start="49576" stop="49713"/>
              <exon start="49832" stop="49911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48924" stop="49017"/>
              <exon start="49213" stop="49335"/>
              <exon start="49576" stop="49713"/>
              <exon start="49832" stop="49930"/>
              <exon start="50019" stop="50121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48925" stop="49017"/>
              <exon start="49213" stop="49335"/>
              <exon start="49576" stop="49713"/>
              <exon start="49832" stop="49930"/>
              <exon start="50019" stop="50155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49329" stop="49335"/>
              <exon start="49576" stop="49713"/>
              <exon start="49832" stop="49930"/>
              <exon start="50019" stop="50322"/>
              <exon start="50404" stop="50465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49861" stop="49930"/>
              <exon start="50019" stop="50322"/>
              <exon start="50404" stop="50627"/>
              <exon start="50714" stop="50798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50424" stop="50627"/>
              <exon start="50714" stop="50800"/>
              <exon start="52214" stop="52554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52222" stop="52775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52257" stop="52761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52265" stop="52422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238657" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTACTATCCCATGCTGCCGTGTTTCTCGGAGAAGCACAGTATGTGGAGAAGACACAGCACAGGAGGAGGAGGCGCTAATGGTTACTTCATTTTGGTACTGTGTCACTTGGCTCTTCACTGCTTACTCATCACTCGCTCAACTGCTTGTTCTAATGGGAATTGCCAG : CTTCTTGATTCATGTGCTTCGGCTACGGATTGTGGGCCTTCTTTATACTGTGGTGATTGCCCTGAATTGGGAAAGAGTCAGCCCTTTTGCATCAGAGGACAAGCTATAGAACCTACTTCCATT : ATCAGTGGATTGCCCTTCAACAAATACTCGTGGTTGGTCACCCATAATGCCTTTTCAATGGTAAATGCACCATTATTGACAGGCCCTCAGAGAATTACATTCTATAATCAAGAAGACACTGTCACAAACCAATTGAGA : AATGGAGTGCGGGGATTGATGCTGGATATGTACGATTTTGAGAACGATATATGGCTCTGTCACTCATTTCGTGGCCAATGTTACAACTTCACTGCCTTT : CAACCGGCAATTAACACTTTGAAAGAGGTGGAGGCATTTTTGAGCGCAAATCCTACAGAAATAGTCACCATCATAATTGAGGATTATGTGCATTCCCCAAAGGGTTTAACAAGGGTATTTGCTGATGCTGGGTTGGACAAGTATTGGTTTCCTGTTTCTAAGATGCCGAGAAAAGGTGATGATTGGCCCACTGTGAATGATATGGTTAAAAAGAATTATCGTCTGTTGGTTTTTACTTCTGACTCTTCCAAGGAAGCTGCTGAAGGAATTGCTTATCAGTGGAGATACATGGTTGAAAATGAGC : CTGGAGACCCTGGAGTGGTGCCTGGCTCATGCTCCAGTCGTAAGGAATCAAAGGCACTTAATTCCAGAAGTGCTTCTCTGTTTCTAATGAATTACTTTCCCACAGTTGCCGTACAAGATGGAGCCTGCAAAGAGCATTCAACTCAATTTGTTGATACGATTGGTGCCTGTTACAAAGCAGCAGGCAACATGATGCCCAATTATGTGGCAGTAAACTTTTACATG : AGAAGTGATGGGGGAGGAGTTTTTGATGTTTTAGATCAAATGAACGGTCGGACACTATGTGGTTGCCCGACGGTCACTGCATGCCAG : GTGGGGGTACATTTTGGAGTTTGTAAGAATACTACTGCAGCGAATGCAGCTCCTACAGCAACCAATACTGCTGGAATGTTTTCAGGGTCCGTGCAATTAACAGGCCATGCTTCAACAATCCATTTTTCCACTACCTTATACCTATTTTCATTGTCTTCTGTAATGGTGTTGTTTCTACTATGAGAAGAAAAAGAGAGTTCCACGCAGAAGTTACATGAGTTTCATCCACGGATGCTCGATATCTACTATATTACCCTGTGTAGAATTATGGAGTCGGAATAGGTACAGTATACACTAGAATCCACTTCGGCATGTCTGAGATGATGAATGTTCAACTTGACATTTTCCTAGTAAAATATAACTTGTCATTTTATAGGAGATTTGGATATAGAAGTAAGCAAGGGATTGGAGAAGAGTATCAACATGTAACAGATACTTTTATCACATCCCATGTGCATTTTCTAGCTGCCAGTTTTTCCCCCTTGGTATGTTGACAATGATAGTCTTATTCTTCAACTGAATTTTGGTTAATTTTTTCAGTATGAAAAATGTTATGTTCCTC</gDNA_template>
            <first_frame> F  T  I  P  C  C  R  V  S  R  R  S  T  V  C  G  E  D  T  A  Q  E  E  E  A  L  M  V  T  S  F  W  Y  C  V  T  W  L  F  T  A  Y  S  S  L  A  Q  L  L  V  L  M  G  I  A  S :   F  L  I  H  V  L  R  L  R  I  V  G  L  L  Y  T  V  V  I  A  L  N  W  E  R  V  S  P  F  A  S  E  D  K  L  *  N  L  L  P  L :   S  V  D  C  P  S  T  N  T  R  G  W  S  P  I  M  P  F  Q  W  *  M  H  H  Y  *  Q  A  L  R  E  L  H  S  I  I  K  K  T  L  S  Q  T  N  *  E :   M  E  C  G  D  *  C  W  I  C  T  I  L  R  T  I  Y  G  S  V  T  H  F  V  A  N  V  T  T  S  L  P  F :   N  R  Q  L  T  L  *  K  R  W  R  H  F  *  A  Q  I  L  Q  K  *  S  P  S  *  L  R  I  M  C  I  P  Q  R  V  *  Q  G  Y  L  L  M  L  G  W  T  S  I  G  F  L  F  L  R  C  R  E  K  V  M  I  G  P  L  *  M  I  W  L  K  R  I  I  V  C  W  F  L  L  L  T  L  P  R  K  L  L  K  E  L  L  I  S  G  D  T  W  L  K  M  S  :  L  E  T  L  E  W  C  L  A  H  A  P  V  V  R  N  Q  R  H  L  I  P  E  V  L  L  C  F  *  *  I  T  F  P  Q  L  P  Y  K  M  E  P  A  K  S  I  Q  L  N  L  L  I  R  L  V  P  V  T  K  Q  Q  A  T  *  C  P  I  M  W  Q  *  T  F  T  * :   E  V  M  G  E  E  F  L  M  F  *  I  K  *  T  V  G  H  Y  V  V  A  R  R  S  L  H  A  R :   W  G  Y  I  L  E  F  V  R  I  L  L  Q  R  M  Q  L  L  Q  Q  P  I  L  L  E  C  F  Q  G  P  C  N  *  Q  A  M  L  Q  Q  S  I  F  P  L  P  Y  T  Y  F  H  C  L  L  *  W  C  C  F  Y  Y  E  K  K  K  R  V  P  R  R  S  Y  M  S  F  I  H  G  C  S  I  S  T  I  L  P  C  V  E  L  W  S  R  N  R  Y  S  I  H  *  N  P  L  R  H  V  *  D  D  E  C  S  T  *  H  F  P  S  K  I  *  L  V  I  L  *  E  I  W  I  *  K  *  A  R  D  W  R  R  V  S  T  C  N  R  Y  F  Y  H  I  P  C  A  F  S  S  C  Q  F  F  P  L  G  M  L  T  M  I  V  L  F  F  N  *  I  L  V  N  F  F  S  M  K  N  V  M  F  L </first_frame>
            <second_frame>  L  L  S  H  A  A  V  F  L  G  E  A  Q  Y  V  E  K  T  Q  H  R  R  R  R  R  *  W  L  L  H  F  G  T  V  S  L  G  S  S  L  L  T  H  H  S  L  N  C  L  F  *  W  E  L  P   : A  S  *  F  M  C  F  G  Y  G  L  W  A  F  F  I  L  W  *  L  P  *  I  G  K  E  S  A  L  L  H  Q  R  T  S  Y  R  T  Y  F  H   : Y  Q  W  I  A  L  Q  Q  I  L  V  V  G  H  P  *  C  L  F  N  G  K  C  T  I  I  D  R  P  S  E  N  Y  I  L  *  S  R  R  H  C  H  K  P  I  E   : K  W  S  A  G  I  D  A  G  Y  V  R  F  *  E  R  Y  M  A  L  S  L  I  S  W  P  M  L  Q  L  H  C  L   : S  T  G  N  *  H  F  E  R  G  G  G  I  F  E  R  K  S  Y  R  N  S  H  H  H  N  *  G  L  C  A  F  P  K  G  F  N  K  G  I  C  *  C  W  V  G  Q  V  L  V  S  C  F  *  D  A  E  K  R  *  *  L  A  H  C  E  *  Y  G  *  K  E  L  S  S  V  G  F  Y  F  *  L  F  Q  G  S  C  *  R  N  C  L  S  V  E  I  H  G  *  K  *  A :   W  R  P  W  S  G  A  W  L  M  L  Q  S  *  G  I  K  G  T  *  F  Q  K  C  F  S  V  S  N  E  L  L  S  H  S  C  R  T  R  W  S  L  Q  R  A  F  N  S  I  C  *  Y  D  W  C  L  L  Q  S  S  R  Q  H  D  A  Q  L  C  G  S  K  L  L  H   : E  K  *  W  G  R  S  F  *  C  F  R  S  N  E  R  S  D  T  M  W  L  P  D  G  H  C  M  P   : G  G  G  T  F  W  S  L  *  E  Y  Y  C  S  E  C  S  S  Y  S  N  Q  Y  C  W  N  V  F  R  V  R  A  I  N  R  P  C  F  N  N  P  F  F  H  Y  L  I  P  I  F  I  V  F  C  N  G  V  V  S  T  M  R  R  K  R  E  F  H  A  E  V  T  *  V  S  S  T  D  A  R  Y  L  L  Y  Y  P  V  *  N  Y  G  V  G  I  G  T  V  Y  T  R  I  H  F  G  M  S  E  M  M  N  V  Q  L  D  I  F  L  V  K  Y  N  L  S  F  Y  R  R  F  G  Y  R  S  K  Q  G  I  G  E  E  Y  Q  H  V  T  D  T  F  I  T  S  H  V  H  F  L  A  A  S  F  S  P  L  V  C  *  Q  *  *  S  Y  S  S  T  E  F  W  L  I  F  S  V  *  K  M  L  C  S   </second_frame>
            <third_frame>   Y  Y  P  M  L  P  C  F  S  E  K  H  S  M  W  R  R  H  S  T  G  G  G  G  A  N  G  Y  F  I  L  V  L  C  H  L  A  L  H  C  L  L  I  T  R  S  T  A  C  S  N  G  N  C  Q  :  L  L  D  S  C  A  S  A  T  D  C  G  P  S  L  Y  C  G  D  C  P  E  L  G  K  S  Q  P  F  C  I  R  G  Q  A  I  E  P  T  S  I  :  I  S  G  L  P  F  N  K  Y  S  W  L  V  T  H  N  A  F  S  M  V  N  A  P  L  L  T  G  P  Q  R  I  T  F  Y  N  Q  E  D  T  V  T  N  Q  L  R  :  N  G  V  R  G  L  M  L  D  M  Y  D  F  E  N  D  I  W  L  C  H  S  F  R  G  Q  C  Y  N  F  T  A  F  :  Q  P  A  I  N  T  L  K  E  V  E  A  F  L  S  A  N  P  T  E  I  V  T  I  I  I  E  D  Y  V  H  S  P  K  G  L  T  R  V  F  A  D  A  G  L  D  K  Y  W  F  P  V  S  K  M  P  R  K  G  D  D  W  P  T  V  N  D  M  V  K  K  N  Y  R  L  L  V  F  T  S  D  S  S  K  E  A  A  E  G  I  A  Y  Q  W  R  Y  M  V  E  N  E   : P  G  D  P  G  V  V  P  G  S  C  S  S  R  K  E  S  K  A  L  N  S  R  S  A  S  L  F  L  M  N  Y  F  P  T  V  A  V  Q  D  G  A  C  K  E  H  S  T  Q  F  V  D  T  I  G  A  C  Y  K  A  A  G  N  M  M  P  N  Y  V  A  V  N  F  Y  M  :  R  S  D  G  G  G  V  F  D  V  L  D  Q  M  N  G  R  T  L  C  G  C  P  T  V  T  A  C  Q  :  V  G  V  H  F  G  V  C  K  N  T  T  A  A  N  A  A  P  T  A  T  N  T  A  G  M  F  S  G  S  V  Q  L  T  G  H  A  S  T  I  H  F  S  T  T  L  Y  L  F  S  L  S  S  V  M  V  L  F  L  L  *  E  E  K  E  S  S  T  Q  K  L  H  E  F  H  P  R  M  L  D  I  Y  Y  I  T  L  C  R  I  M  E  S  E  *  V  Q  Y  T  L  E  S  T  S  A  C  L  R  *  *  M  F  N  L  T  F  S  *  *  N  I  T  C  H  F  I  G  D  L  D  I  E  V  S  K  G  L  E  K  S  I  N  M  *  Q  I  L  L  S  H  P  M  C  I  F  *  L  P  V  F  P  P  W  Y  V  D  N  D  S  L  I  L  Q  L  N  F  G  *  F  F  Q  Y  E  K  C  Y  V  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48853" stop="49017"/>
                    <exon start="49213" stop="49335"/>
                    <exon start="49576" stop="49713"/>
                    <exon start="49832" stop="49930"/>
                    <exon start="50019" stop="50322"/>
                    <exon start="50404" stop="50627"/>
                    <exon start="50714" stop="50800"/>
                    <exon start="52214" stop="52396"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1320</number_coding_nucleotides>
                  <number_encoded_amino_acids>440</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYPMLPCFSEKHSMWRRHSTGGGGANGYFILVLCHLALHCLLITRSTACSNGNCQLLDSCASATDCGPSLYCGDCPELGKSQPFCIRGQAIEPTSIISGLPFNKYSWLVTHNAFSMVNAPLLTGPQRITFYNQEDTVTNQLRNGVRGLMLDMYDFENDIWLCHSFRGQCYNFTAFQPAINTLKEVEAFLSANPTEIVTIIIEDYVHSPKGLTRVFADAGLDKYWFPVSKMPRKGDDWPTVNDMVKKNYRLLVFTSDSSKEAAEGIAYQWRYMVENEPGDPGVVPGSCSSRKESKALNSRSASLFLMNYFPTVAVQDGACKEHSTQFVDTIGACYKAAGNMMPNYVAVNFYMRSDGGGVFDVLDQMNGRTLCGCPTVTACQVGVHFGVCKNTTAANAAPTATNTAGMFSGSVQLTGHASTIHFSTTLYLFSLSSVMVLFLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52477" stop="52707"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYGVGIGTVYTRIHFGMSEMMNVQLDIFLVKYNLSFYRRFGYRSKQGIGEEYQHVTDTFITSHVHFLAASFSPLVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="55427" PGL_stop="52939"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55427" e_stop="55161"/>
            <exon e_start="55075" e_stop="54929"/>
            <exon e_start="54147" e_stop="54012"/>
            <exon e_start="53594" e_stop="53496"/>
            <exon e_start="53321" e_stop="52942"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.751" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.434" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55427" e_stop="55161" e_length="267"/>
          </exon>
          <intron i_serial="1" don_prob="0.751" acc_prob="1.000">
            <gDNA_intron_boundary i_start="55160" i_stop="55076" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55075" e_stop="54929" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.995">
            <gDNA_intron_boundary i_start="54928" i_stop="54148" i_length="781"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54147" e_stop="54012" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.434">
            <gDNA_intron_boundary i_start="54011" i_stop="53595" i_length="417"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53594" e_stop="53496" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="53495" i_stop="53322" i_length="174"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53321" e_stop="52942" e_length="380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55427" stop="55161"/>
              <exon start="55075" stop="54929"/>
              <exon start="54147" stop="54012"/>
              <exon start="53594" stop="53496"/>
              <exon start="53321" stop="53285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55427" stop="55161"/>
              <exon start="55075" stop="54929"/>
              <exon start="54147" stop="54012"/>
              <exon start="53594" stop="53542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55426" stop="55161"/>
              <exon start="55075" stop="54929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55019" stop="54929"/>
              <exon start="54147" stop="54012"/>
              <exon start="53594" stop="53496"/>
              <exon start="53321" stop="52942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55016" stop="54929"/>
              <exon start="54147" stop="54012"/>
              <exon start="53594" stop="53496"/>
              <exon start="53321" stop="52942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54041" stop="54012"/>
              <exon start="53594" stop="53496"/>
              <exon start="53321" stop="53092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358592" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTACTTGTACGATTTTTATGAATAGTTTTCCTCTGTTCCACAGCTTACATAAACCACGACTCCTTTCCCTTTTTCTTCTTGTTGAAATTTTCATCAAATTTGTTGAATTTTGAAGTTAATTCGTTTGGTTAATAATTTGATTCTTCCATCATGAAAAGAAAGGGGATGGAAGAATTAGATGATCAAAACAGGCCGATTGATAGACTCCCCTTTGACCTCTTGGCTCACATTTTTGCTATGCTTACTTGTTTCAAGGATTTGGCTCA : GACAAGTGCTGTGTGCAGGAAATGGAGACAGGGGGTGAAGGAATCGTTAGCTAGAAGAGAAAAAATGAGTTTTTCTGGCTGGAAAGTGGATGATGATTCAACAACTCGCCTTGTGCTTCATGCTTACAGTCTCAAGGAACTTGACAT : TTCGAGGAGCCGTTGGGGTTGTCAAATAACCGATCGCGGGTTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTATGGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAGCTG : ATCTCCAGAGCTAATTCTCTACAGCATCTGAATATTGGTGGTACATTTATAACAGACACGTCCTTGTTTGCTATTGCTGGTAGCTGCCCACACTTGAAG : TCTATTGTGCTGTGGGGCTGCCGTCATGTAACTGAAAATGGGCTTCTAGCTTTAGTAAATAAGTGTCGCAAACTAGAGTCTATCAATGCATGGGGCATGAGGGTTACCGTGGACTGCTTTGTCGGCCTACTCACTATTAGCCCAGCTCTACAAATAGAACCTAAAGGAATGCTGCCTAATATTGCTGTCTTCTGAGGAGCCTTTAAGTTCCTGTGCGTCCTTTGTCTTTGGAAGGGCAATCCACCTGAATTGTTATTGCATTATATCTTGTGTACAGCTTGTCAATTGTTTCATTGACCAATAATGCTTTGTATTTATTTGGACATTGCCTGCTGCAGGGCGTCGAAAAGATCCGATCTGCTAGTAATTATTAAAATTCC</gDNA_template>
            <first_frame> P  T  C  T  I  F  M  N  S  F  P  L  F  H  S  L  H  K  P  R  L  L  S  L  F  L  L  V  E  I  F  I  K  F  V  E  F  *  S  *  F  V  W  L  I  I  *  F  F  H  H  E  K  K  G  D  G  R  I  R  *  S  K  Q  A  D  *  *  T  P  L  *  P  L  G  S  H  F  C  Y  A  Y  L  F  Q  G  F  G  S  :  D  K  C  C  V  Q  E  M  E  T  G  G  E  G  I  V  S  *  K  R  K  N  E  F  F  W  L  E  S  G  *  *  F  N  N  S  P  C  A  S  C  L  Q  S  Q  G  T  *  H  :  F  E  E  P  L  G  L  S  N  N  R  S  R  V  V  P  I  V  N  C  K  M  C  Q  Q  S  I  I  T  I  F  M  G  H  Y  W  D  H  R  Y  R  C  C  S  A   : D  L  Q  S  *  F  S  T  A  S  E  Y  W  W  Y  I  Y  N  R  H  V  L  V  C  Y  C  W  *  L  P  T  L  E   : V  Y  C  A  V  G  L  P  S  C  N  *  K  W  A  S  S  F  S  K  *  V  S  Q  T  R  V  Y  Q  C  M  G  H  E  G  Y  R  G  L  L  C  R  P  T  H  Y  *  P  S  S  T  N  R  T  *  R  N  A  A  *  Y  C  C  L  L  R  S  L  *  V  P  V  R  P  L  S  L  E  G  Q  S  T  *  I  V  I  A  L  Y  L  V  Y  S  L  S  I  V  S  L  T  N  N  A  L  Y  L  F  G  H  C  L  L  Q  G  V  E  K  I  R  S  A  S  N  Y  *  N  S </first_frame>
            <second_frame>  L  L  V  R  F  L  *  I  V  F  L  C  S  T  A  Y  I  N  H  D  S  F  P  F  F  F  L  L  K  F  S  S  N  L  L  N  F  E  V  N  S  F  G  *  *  F  D  S  S  I  M  K  R  K  G  M  E  E  L  D  D  Q  N  R  P  I  D  R  L  P  F  D  L  L  A  H  I  F  A  M  L  T  C  F  K  D  L  A  Q :   T  S  A  V  C  R  K  W  R  Q  G  V  K  E  S  L  A  R  R  E  K  M  S  F  S  G  W  K  V  D  D  D  S  T  T  R  L  V  L  H  A  Y  S  L  K  E  L  D  I :   S  R  S  R  W  G  C  Q  I  T  D  R  G  L  Y  Q  L  S  T  A  K  C  V  S  N  L  S  S  L  S  L  W  G  T  T  G  I  T  D  T  G  V  V  Q  L  :  I  S  R  A  N  S  L  Q  H  L  N  I  G  G  T  F  I  T  D  T  S  L  F  A  I  A  G  S  C  P  H  L  K  :  S  I  V  L  W  G  C  R  H  V  T  E  N  G  L  L  A  L  V  N  K  C  R  K  L  E  S  I  N  A  W  G  M  R  V  T  V  D  C  F  V  G  L  L  T  I  S  P  A  L  Q  I  E  P  K  G  M  L  P  N  I  A  V  F  *  G  A  F  K  F  L  C  V  L  C  L  W  K  G  N  P  P  E  L  L  L  H  Y  I  L  C  T  A  C  Q  L  F  H  *  P  I  M  L  C  I  Y  L  D  I  A  C  C  R  A  S  K  R  S  D  L  L  V  I  I  K  I   </second_frame>
            <third_frame>   Y  L  Y  D  F  Y  E  *  F  S  S  V  P  Q  L  T  *  T  T  T  P  F  P  F  S  S  C  *  N  F  H  Q  I  C  *  I  L  K  L  I  R  L  V  N  N  L  I  L  P  S  *  K  E  R  G  W  K  N  *  M  I  K  T  G  R  L  I  D  S  P  L  T  S  W  L  T  F  L  L  C  L  L  V  S  R  I  W  L   : R  Q  V  L  C  A  G  N  G  D  R  G  *  R  N  R  *  L  E  E  K  K  *  V  F  L  A  G  K  W  M  M  I  Q  Q  L  A  L  C  F  M  L  T  V  S  R  N  L  T   : F  R  G  A  V  G  V  V  K  *  P  I  A  G  C  T  N  C  Q  L  Q  N  V  S  A  I  Y  H  H  Y  L  Y  G  A  L  L  G  S  Q  I  Q  V  L  F  S  * :   S  P  E  L  I  L  Y  S  I  *  I  L  V  V  H  L  *  Q  T  R  P  C  L  L  L  L  V  A  A  H  T  *  S :   L  L  C  C  G  A  A  V  M  *  L  K  M  G  F  *  L  *  *  I  S  V  A  N  *  S  L  S  M  H  G  A  *  G  L  P  W  T  A  L  S  A  Y  S  L  L  A  Q  L  Y  K  *  N  L  K  E  C  C  L  I  L  L  S  S  E  E  P  L  S  S  C  A  S  F  V  F  G  R  A  I  H  L  N  C  Y  C  I  I  S  C  V  Q  L  V  N  C  F  I  D  Q  *  C  F  V  F  I  W  T  L  P  A  A  G  R  R  K  D  P  I  C  *  *  L  L  K  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55291" stop="55161"/>
                    <exon start="55075" stop="54929"/>
                    <exon start="54147" stop="54012"/>
                    <exon start="53594" stop="53496"/>
                    <exon start="53321" stop="53127"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDSSIMKRKGMEELDDQNRPIDRLPFDLLAHIFAMLTCFKDLAQTSAVCRKWRQGVKESLARREKMSFSGWKVDDDSTTRLVLHAYSLKELDISRSRWGCQITDRGLYQLSTAKCVSNLSSLSLWGTTGITDTGVVQLISRANSLQHLNIGGTFITDTSLFAIAGSCPHLKSIVLWGCRHVTENGLLALVNKCRKLESINAWGMRVTVDCFVGLLTISPALQIEPKGMLPNIAVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="54131" e_stop="54012"/>
            <exon e_start="53570" e_stop="53496"/>
            <exon e_start="53321" e_stop="52939"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="0.000" e_score="0.983"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="54131" e_stop="54012" e_length="120"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54011" i_stop="53571" i_length="441"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53570" e_stop="53496" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="53495" i_stop="53322" i_length="174"/>
          </intron>
          <exon e_serial="3" e_score="0.948">
            <gDNA_exon_boundary e_start="53321" e_stop="52939" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54131" stop="54012"/>
              <exon start="53570" stop="53496"/>
              <exon start="53321" stop="52939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54131" stop="54012"/>
              <exon start="53570" stop="53496"/>
              <exon start="53321" stop="52959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695911" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTGTCAAATAACCGATCGCGGGTTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTATGGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAGCTG : CATCTGAATATTGGTGGTACATTTATAACAGACACGTCCTTGTTTGCTATTGCTGGTAGCTGCCCACACTTGAAG : TCTATTGTGCTGTGGGGCTGCCGTCATGTAACTGAAAATGGGCTTCTAGCTTTAGTAAATAAGTGTCGCAAACTAGAGTCTATCAATGCATGGGGCATGAGGGTTACCGTGGACTGCTTTGTCGGCCTACTCACTATTAGCCCAGCTCTACAAATAGAACCTAAAGGAATGCTGCCTAATATTGCTGTCTTCTGAGGAGCCTTTAAGTTCCTGTGCGTCCTTTGTCTTTGGAAGGGCAATCCACCTGAATTGTTATTGCATTATATCTTGTGTACAGCTTGTCAATTGTTTCATTGACCAATAATGCTTTGTATTTATTTGGACATTGCCTGCTGCAGGGCGTCGAAAAGATCCGATCTGCTAGTAATTATTAAAATTCCATT</gDNA_template>
            <first_frame> G  C  Q  I  T  D  R  G  L  Y  Q  L  S  T  A  K  C  V  S  N  L  S  S  L  S  L  W  G  T  T  G  I  T  D  T  G  V  V  Q  L  :  H  L  N  I  G  G  T  F  I  T  D  T  S  L  F  A  I  A  G  S  C  P  H  L  K  :  S  I  V  L  W  G  C  R  H  V  T  E  N  G  L  L  A  L  V  N  K  C  R  K  L  E  S  I  N  A  W  G  M  R  V  T  V  D  C  F  V  G  L  L  T  I  S  P  A  L  Q  I  E  P  K  G  M  L  P  N  I  A  V  F  *  G  A  F  K  F  L  C  V  L  C  L  W  K  G  N  P  P  E  L  L  L  H  Y  I  L  C  T  A  C  Q  L  F  H  *  P  I  M  L  C  I  Y  L  D  I  A  C  C  R  A  S  K  R  S  D  L  L  V  I  I  K  I  P   </first_frame>
            <second_frame>  V  V  K  *  P  I  A  G  C  T  N  C  Q  L  Q  N  V  S  A  I  Y  H  H  Y  L  Y  G  A  L  L  G  S  Q  I  Q  V  L  F  S  C :   I  *  I  L  V  V  H  L  *  Q  T  R  P  C  L  L  L  L  V  A  A  H  T  *  S :   L  L  C  C  G  A  A  V  M  *  L  K  M  G  F  *  L  *  *  I  S  V  A  N  *  S  L  S  M  H  G  A  *  G  L  P  W  T  A  L  S  A  Y  S  L  L  A  Q  L  Y  K  *  N  L  K  E  C  C  L  I  L  L  S  S  E  E  P  L  S  S  C  A  S  F  V  F  G  R  A  I  H  L  N  C  Y  C  I  I  S  C  V  Q  L  V  N  C  F  I  D  Q  *  C  F  V  F  I  W  T  L  P  A  A  G  R  R  K  D  P  I  C  *  *  L  L  K  F  H  </second_frame>
            <third_frame>   L  S  N  N  R  S  R  V  V  P  I  V  N  C  K  M  C  Q  Q  S  I  I  T  I  F  M  G  H  Y  W  D  H  R  Y  R  C  C  S  A   : A  S  E  Y  W  W  Y  I  Y  N  R  H  V  L  V  C  Y  C  W  *  L  P  T  L  E   : V  Y  C  A  V  G  L  P  S  C  N  *  K  W  A  S  S  F  S  K  *  V  S  Q  T  R  V  Y  Q  C  M  G  H  E  G  Y  R  G  L  L  C  R  P  T  H  Y  *  P  S  S  T  N  R  T  *  R  N  A  A  *  Y  C  C  L  L  R  S  L  *  V  P  V  R  P  L  S  L  E  G  Q  S  T  *  I  V  I  A  L  Y  L  V  Y  S  L  S  I  V  S  L  T  N  N  A  L  Y  L  F  G  H  C  L  L  Q  G  V  E  K  I  R  S  A  S  N  Y  *  N  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54131" stop="54012"/>
                    <exon start="53570" stop="53496"/>
                    <exon start="53321" stop="53127"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCQITDRGLYQLSTAKCVSNLSSLSLWGTTGITDTGVVQLHLNIGGTFITDTSLFAIAGSCPHLKSIVLWGCRHVTENGLLALVNKCRKLESINAWGMRVTVDCFVGLLTISPALQIEPKGMLPNIAVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="55426" e_stop="55161"/>
            <exon e_start="55075" e_stop="54929"/>
            <exon e_start="54147" e_stop="53944"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.751" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55426" e_stop="55161" e_length="266"/>
          </exon>
          <intron i_serial="1" don_prob="0.751" acc_prob="1.000">
            <gDNA_intron_boundary i_start="55160" i_stop="55076" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55075" e_stop="54929" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.995">
            <gDNA_intron_boundary i_start="54928" i_stop="54148" i_length="781"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="54147" e_stop="53944" e_length="204"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55426" stop="55161"/>
              <exon start="55075" stop="54929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55291" stop="55161"/>
              <exon start="55075" stop="54929"/>
              <exon start="54147" stop="53944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251236" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACTTGTACGATTTTTATGAATAGTTTTCCTCTGTTCCACAGCTTACATAAACCACGACTCCTTTCCCTTTTTCTTCTTGTTGAAATTTTCATCAAATTTGTTGAATTTTGAAGTTAATTCGTTTGGTTAATAATTTGATTCTTCCATCATGAAAAGAAAGGGGATGGAAGAATTAGATGATCAAAACAGGCCGATTGATAGACTCCCCTTTGACCTCTTGGCTCACATTTTTGCTATGCTTACTTGTTTCAAGGATTTGGCTCA : GACAAGTGCTGTGTGCAGGAAATGGAGACAGGGGGTGAAGGAATCGTTAGCTAGAAGAGAAAAAATGAGTTTTTCTGGCTGGAAAGTGGATGATGATTCAACAACTCGCCTTGTGCTTCATGCTTACAGTCTCAAGGAACTTGACAT : TTCGAGGAGCCGTTGGGGTTGTCAAATAACCGATCGCGGGTTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTATGGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAGCTGGTATGTCGTCCTCATTGTTTATCGTGTCTGTGATCGTGATATTAAGTAGGTCTAGTTAGATGTTATTT</gDNA_template>
            <first_frame> L  L  V  R  F  L  *  I  V  F  L  C  S  T  A  Y  I  N  H  D  S  F  P  F  F  F  L  L  K  F  S  S  N  L  L  N  F  E  V  N  S  F  G  *  *  F  D  S  S  I  M  K  R  K  G  M  E  E  L  D  D  Q  N  R  P  I  D  R  L  P  F  D  L  L  A  H  I  F  A  M  L  T  C  F  K  D  L  A  Q :   T  S  A  V  C  R  K  W  R  Q  G  V  K  E  S  L  A  R  R  E  K  M  S  F  S  G  W  K  V  D  D  D  S  T  T  R  L  V  L  H  A  Y  S  L  K  E  L  D  I :   S  R  S  R  W  G  C  Q  I  T  D  R  G  L  Y  Q  L  S  T  A  K  C  V  S  N  L  S  S  L  S  L  W  G  T  T  G  I  T  D  T  G  V  V  Q  L  V  C  R  P  H  C  L  S  C  L  *  S  *  Y  *  V  G  L  V  R  C  Y   </first_frame>
            <second_frame>  Y  L  Y  D  F  Y  E  *  F  S  S  V  P  Q  L  T  *  T  T  T  P  F  P  F  S  S  C  *  N  F  H  Q  I  C  *  I  L  K  L  I  R  L  V  N  N  L  I  L  P  S  *  K  E  R  G  W  K  N  *  M  I  K  T  G  R  L  I  D  S  P  L  T  S  W  L  T  F  L  L  C  L  L  V  S  R  I  W  L   : R  Q  V  L  C  A  G  N  G  D  R  G  *  R  N  R  *  L  E  E  K  K  *  V  F  L  A  G  K  W  M  M  I  Q  Q  L  A  L  C  F  M  L  T  V  S  R  N  L  T   : F  R  G  A  V  G  V  V  K  *  P  I  A  G  C  T  N  C  Q  L  Q  N  V  S  A  I  Y  H  H  Y  L  Y  G  A  L  L  G  S  Q  I  Q  V  L  F  S  W  Y  V  V  L  I  V  Y  R  V  C  D  R  D  I  K  *  V  *  L  D  V  I  </second_frame>
            <third_frame>   T  C  T  I  F  M  N  S  F  P  L  F  H  S  L  H  K  P  R  L  L  S  L  F  L  L  V  E  I  F  I  K  F  V  E  F  *  S  *  F  V  W  L  I  I  *  F  F  H  H  E  K  K  G  D  G  R  I  R  *  S  K  Q  A  D  *  *  T  P  L  *  P  L  G  S  H  F  C  Y  A  Y  L  F  Q  G  F  G  S  :  D  K  C  C  V  Q  E  M  E  T  G  G  E  G  I  V  S  *  K  R  K  N  E  F  F  W  L  E  S  G  *  *  F  N  N  S  P  C  A  S  C  L  Q  S  Q  G  T  *  H  :  F  E  E  P  L  G  L  S  N  N  R  S  R  V  V  P  I  V  N  C  K  M  C  Q  Q  S  I  I  T  I  F  M  G  H  Y  W  D  H  R  Y  R  C  C  S  A  G  M  S  S  S  L  F  I  V  S  V  I  V  I  L  S  R  S  S  *  M  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55291" stop="55161"/>
                    <exon start="55075" stop="54929"/>
                    <exon start="54147" stop="53979"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDSSIMKRKGMEELDDQNRPIDRLPFDLLAHIFAMLTCFKDLAQTSAVCRKWRQGVKESLARREKMSFSGWKVDDDSTTRLVLHAYSLKELDISRSRWGCQITDRGLYQLSTAKCVSNLSSLSLWGTTGITDTGVVQLVCRPHCLSCL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="56330" PGL_stop="56776"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56330" e_stop="56776"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="56330" e_stop="56776" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56330" stop="56651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56330" stop="56623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56331" stop="56776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAAATATACATTTTTGCATGTGTATATACAACTTTCTCTCGCTTTACACAATACAGAAACAGAATTATATACTTCTGTGTATACAGCGAGAGAGGCGAGCGAGAATGAAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACGCTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAACCCTAGCTATTCCATTTAATTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  L  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  C  I  I  R  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  T  F  S  R  F  T  Q  Y  R  N  R  I  I  Y  F  C  V  Y  S  E  R  G  E  R  E  *  R  V  A  S  E  I  F  G  R  E  T  L  A  N  F  S  *  C  L  L  W  S  T  I  K  S  T  L  A  I  P  F  N  L  G  Y  * </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  Y  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  K  Y  T  F  L  H  V  Y  I  Q  L  S  L  A  L  H  N  T  E  T  E  L  Y  T  S  V  Y  T  A  R  E  A  S  E  N  E  E  W  R  A  R  F  L  G  E  R  R  W  Q  I  L  A  N  V  C  Y  G  A  Q  L  N  Q  P  *  L  F  H  L  I  *  V  I   </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  M  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  N  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  I  Q  K  Q  N  Y  I  L  L  C  I  Q  R  E  R  R  A  R  M  K  S  G  E  R  D  F  W  E  R  D  A  G  K  F  *  L  M  F  A  M  E  H  N  *  I  N  P  S  Y  S  I  *  F  R  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56517" stop="56750"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMFVNCIIKCITRKYTFLHVYIQLSLALHNTETELYTSVYTAREASENEEWRARFLGERRWQILANVCYGAQLNQP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="58858" PGL_stop="57557"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58858" e_stop="58717"/>
            <exon e_start="58623" e_stop="58544"/>
            <exon e_start="58458" e_stop="58314"/>
            <exon e_start="58239" e_stop="58108"/>
            <exon e_start="58024" e_stop="57557"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58858" e_stop="58717" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58716" i_stop="58624" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58623" e_stop="58544" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="58543" i_stop="58459" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58458" e_stop="58314" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58239" e_stop="58108" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="58107" i_stop="58025" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58024" e_stop="57557" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58858" stop="58717"/>
              <exon start="58623" stop="58544"/>
              <exon start="58458" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58858" stop="58717"/>
              <exon start="58623" stop="58544"/>
              <exon start="58458" stop="58341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58840" stop="58717"/>
              <exon start="58623" stop="58544"/>
              <exon start="58458" stop="58314"/>
              <exon start="58239" stop="58149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58838" stop="58717"/>
              <exon start="58623" stop="58544"/>
              <exon start="58458" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58816" stop="58717"/>
              <exon start="58623" stop="58544"/>
              <exon start="58458" stop="58362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58797" stop="58717"/>
              <exon start="58623" stop="58544"/>
              <exon start="58458" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58737" stop="58717"/>
              <exon start="58623" stop="58544"/>
              <exon start="58458" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58591" stop="58544"/>
              <exon start="58458" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58581" stop="58544"/>
              <exon start="58458" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58408" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58408" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58408" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58408" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58408" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58400" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58379" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352305" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTATCTATTTCAGAAACAGCAAGATATATAGTTTAAAAATATATCCATAAGCAGTTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG : TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG : GAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG : ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC : GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATCAAGGCATTATTTTTGAAATTTCCCCTATTTCGAATTTTTCATTATTTTACGCTTTATTTTTAATTCTGTCTTTTCTGGTAAAAAATTGTTGTCTATGTACCTATTGATTAATTTTACAATGTATTTTCATAAATAAGAACAAAAGTTCAAGTAAATTAAGTTTCAAGG</gDNA_template>
            <first_frame> F  F  I  Y  F  R  N  S  K  I  Y  S  L  K  I  Y  P  *  A  V  S  N  D  E  Q  W  R  K  Q  *  T  P  R  S  W  T  Q  E  S  L  A  K  R  C  P  I  S   : V  H  S  *  N  K  C  V  P  E  R  A  *  S  H  E  R  A  K  R  D  Y  C  K  T  P  L  :  E  P  Y  D  H  L  C  *  *  R  S  I  F  E  Y  A  S  Q  T  H  Q  C  Q  K  H  H  G  N  W  G  F  Y  W  L  L  S  A  G  N  C  Y  G  S  S  *  *  W  Q   : D  S  S  N  G  Y  *  P  R  *  L  *  D  W  S  S  S  N  *  K  G  W  S  S  A  Q  N  *  I  Q  R  R  P  C  T  S  C  S  *  P  N  D  *  R   : R  P  I  P  W  I  I  *  F  H  I  C  G  C  *  Q  G  Q  L  F  E  L  S  Q  E  I  N  R  L  G  *  G  W  W  S  N  W  V  *  Q  Y  S  M  E  R  I  S  G  G  T  T  *  C  T  P  *  K  I  R  *  V  L  *  G  F  R  I  G  T  Q  Q  G  L  G  C  *  F  Q  N  *  N  L  S  A  S  C  W  *  W  Y  H  F  V  S  P  H  Q  L  K  Y  Q  G  I  I  F  E  I  S  P  I  S  N  F  S  L  F  Y  A  L  F  L  I  L  S  F  L  V  K  N  C  C  L  C  T  Y  *  L  I  L  Q  C  I  F  I  N  K  N  K  S  S  S  K  L  S  F  K  </first_frame>
            <second_frame>  F  L  S  I  S  E  T  A  R  Y  I  V  *  K  Y  I  H  K  Q  L  A  M  M  S  N  G  E  N  S  R  H  Q  E  V  G  H  K  S  L  L  Q  S  D  A  L  Y  Q  :  Y  I  L  E  T  S  V  Y  P  R  E  P  E  A  M  K  E  L  R  E  I  T  A  K  H  P  W :   N  L  M  T  T  S  A  D  E  G  Q  F  L  N  M  L  L  K  L  I  N  A  K  N  T  M  E  I  G  V  F  T  G  Y  S  L  L  A  T  A  M  A  L  P  D  D  G  K  :  I  L  A  M  D  I  N  R  D  N  Y  E  I  G  L  P  V  I  E  K  A  G  L  A  H  K  I  E  F  R  E  G  P  A  L  P  V  L  D  Q  M  I  E  D  :  G  Q  Y  H  G  S  Y  D  F  I  F  V  D  A  D  K  D  N  Y  L  N  Y  H  K  R  L  I  D  L  V  K  V  G  G  V  I  G  Y  D  N  T  L  W  N  G  S  V  V  A  P  P  D  A  P  L  R  K  Y  V  R  Y  Y  R  D  F  V  L  E  L  N  K  A  L  A  A  D  S  R  I  E  I  C  Q  L  P  V  G  D  G  I  T  L  C  R  R  I  S  *  N  I  K  A  L  F  L  K  F  P  L  F  R  I  F  H  Y  F  T  L  Y  F  *  F  C  L  F  W  *  K  I  V  V  Y  V  P  I  D  *  F  Y  N  V  F  S  *  I  R  T  K  V  Q  V  N  *  V  S  R </second_frame>
            <third_frame>   F  Y  L  F  Q  K  Q  Q  D  I  *  F  K  N  I  S  I  S  S  *  Q  *  *  A  M  E  K  T  V  D  T  K  K  L  D  T  R  V  S  C  K  A  M  P  Y  I  S :   T  F  L  K  Q  V  C  T  R  E  S  L  K  P  *  K  S  *  E  R  L  L  Q  N  T  L   : G  T  L  *  P  P  L  L  M  K  V  N  F  *  I  C  F  S  N  S  S  M  P  K  T  P  W  K  L  G  F  L  L  V  T  L  C  W  Q  L  L  W  L  F  L  M  M  A  R :   F  *  Q  W  I  L  T  A  I  T  M  R  L  V  F  Q  *  L  K  R  L  V  *  R  T  K  L  N  S  E  K  A  L  H  F  L  F  L  T  K  *  L  K  T :   A  N  T  M  D  H  M  I  S  Y  L  W  M  L  T  R  T  T  I  *  I  I  T  R  D  *  S  T  W  L  R  L  V  E  *  L  G  M  T  I  L  Y  G  T  D  Q  W  W  H  H  L  M  H  P  L  E  N  T  L  G  I  I  G  I  S  Y  W  N  S  T  R  P  W  L  L  I  P  E  L  K  S  V  S  F  L  L  V  M  V  S  L  C  V  A  A  S  V  K  I  S  R  H  Y  F  *  N  F  P  Y  F  E  F  F  I  I  L  R  F  I  F  N  S  V  F  S  G  K  K  L  L  S  M  Y  L  L  I  N  F  T  M  Y  F  H  K  *  E  Q  K  F  K  *  I  K  F  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58818" stop="58717"/>
                    <exon start="58623" stop="58544"/>
                    <exon start="58458" stop="58314"/>
                    <exon start="58239" stop="58108"/>
                    <exon start="58024" stop="57731"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYIHKQLAMMSNGENSRHQEVGHKSLLQSDALYQYILETSVYPREPEAMKELREITAKHPWNLMTTSADEGQFLNMLLKLINAKNTMEIGVFTGYSLLATAMALPDDGKILAMDINRDNYEIGLPVIEKAGLAHKIEFREGPALPVLDQMIEDGQYHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADSRIEICQLPVGDGITLCRRIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58840" e_stop="58717"/>
            <exon e_start="58623" e_stop="58314"/>
            <exon e_start="58239" e_stop="58108"/>
            <exon e_start="58024" e_stop="57596"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58840" e_stop="58717" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58716" i_stop="58624" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58623" e_stop="58314" e_length="310"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58239" e_stop="58108" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="58107" i_stop="58025" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58024" e_stop="57596" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58840" stop="58717"/>
              <exon start="58623" stop="58314"/>
              <exon start="58239" stop="58148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58408" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58408" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58408" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58408" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58408" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58400" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58379" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352305" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAGCAAGATATATAGTTTAAAAATATATCCATAAGCAGTTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG : TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG : ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC : GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATCAAGGCATTATTTTTGAAATTTCCCCTATTTCGAATTTTTCATTATTTTACGCTTTATTTTTAATTCTGTCTTTTCTGGTAAAAAATTGTTGTCTATGTACCTATTGATTAATTTTACAATGTATTTTCA</gDNA_template>
            <first_frame> N  S  K  I  Y  S  L  K  I  Y  P  *  A  V  S  N  D  E  Q  W  R  K  Q  *  T  P  R  S  W  T  Q  E  S  L  A  K  R  C  P  I  S   : V  H  S  *  N  K  C  V  P  E  R  A  *  S  H  E  R  A  K  R  D  Y  C  K  T  P  L  V  I  T  H  F  L  T  N  Y  F  I  Q  F  D  T  Y  C  M  L  I  S  S  F  C  G  K  K  T  G  T  L  *  P  P  L  L  M  K  V  N  F  *  I  C  F  S  N  S  S  M  P  K  T  P  W  K  L  G  F  L  L  V  T  L  C  W  Q  L  L  W  L  F  L  M  M  A  R :   F  *  Q  W  I  L  T  A  I  T  M  R  L  V  F  Q  *  L  K  R  L  V  *  R  T  K  L  N  S  E  K  A  L  H  F  L  F  L  T  K  *  L  K  T :   A  N  T  M  D  H  M  I  S  Y  L  W  M  L  T  R  T  T  I  *  I  I  T  R  D  *  S  T  W  L  R  L  V  E  *  L  G  M  T  I  L  Y  G  T  D  Q  W  W  H  H  L  M  H  P  L  E  N  T  L  G  I  I  G  I  S  Y  W  N  S  T  R  P  W  L  L  I  P  E  L  K  S  V  S  F  L  L  V  M  V  S  L  C  V  A  A  S  V  K  I  S  R  H  Y  F  *  N  F  P  Y  F  E  F  F  I  I  L  R  F  I  F  N  S  V  F  S  G  K  K  L  L  S  M  Y  L  L  I  N  F  T  M  Y  F   </first_frame>
            <second_frame>  T  A  R  Y  I  V  *  K  Y  I  H  K  Q  L  A  M  M  S  N  G  E  N  S  R  H  Q  E  V  G  H  K  S  L  L  Q  S  D  A  L  Y  Q  :  Y  I  L  E  T  S  V  Y  P  R  E  P  E  A  M  K  E  L  R  E  I  T  A  K  H  P  W  *  *  L  I  F  S  L  I  T  S  S  N  S  I  L  I  V  C  *  Y  L  H  F  V  E  K  K  Q  E  P  Y  D  H  L  C  *  *  R  S  I  F  E  Y  A  S  Q  T  H  Q  C  Q  K  H  H  G  N  W  G  F  Y  W  L  L  S  A  G  N  C  Y  G  S  S  *  *  W  Q   : D  S  S  N  G  Y  *  P  R  *  L  *  D  W  S  S  S  N  *  K  G  W  S  S  A  Q  N  *  I  Q  R  R  P  C  T  S  C  S  *  P  N  D  *  R   : R  P  I  P  W  I  I  *  F  H  I  C  G  C  *  Q  G  Q  L  F  E  L  S  Q  E  I  N  R  L  G  *  G  W  W  S  N  W  V  *  Q  Y  S  M  E  R  I  S  G  G  T  T  *  C  T  P  *  K  I  R  *  V  L  *  G  F  R  I  G  T  Q  Q  G  L  G  C  *  F  Q  N  *  N  L  S  A  S  C  W  *  W  Y  H  F  V  S  P  H  Q  L  K  Y  Q  G  I  I  F  E  I  S  P  I  S  N  F  S  L  F  Y  A  L  F  L  I  L  S  F  L  V  K  N  C  C  L  C  T  Y  *  L  I  L  Q  C  I  F  </second_frame>
            <third_frame>   Q  Q  D  I  *  F  K  N  I  S  I  S  S  *  Q  *  *  A  M  E  K  T  V  D  T  K  K  L  D  T  R  V  S  C  K  A  M  P  Y  I  S :   T  F  L  K  Q  V  C  T  R  E  S  L  K  P  *  K  S  *  E  R  L  L  Q  N  T  L  G  N  N  S  F  S  H  *  L  L  H  P  I  R  Y  L  L  Y  A  D  I  F  I  L  W  K  K  N  R  N  L  M  T  T  S  A  D  E  G  Q  F  L  N  M  L  L  K  L  I  N  A  K  N  T  M  E  I  G  V  F  T  G  Y  S  L  L  A  T  A  M  A  L  P  D  D  G  K  :  I  L  A  M  D  I  N  R  D  N  Y  E  I  G  L  P  V  I  E  K  A  G  L  A  H  K  I  E  F  R  E  G  P  A  L  P  V  L  D  Q  M  I  E  D  :  G  Q  Y  H  G  S  Y  D  F  I  F  V  D  A  D  K  D  N  Y  L  N  Y  H  K  R  L  I  D  L  V  K  V  G  G  V  I  G  Y  D  N  T  L  W  N  G  S  V  V  A  P  P  D  A  P  L  R  K  Y  V  R  Y  Y  R  D  F  V  L  E  L  N  K  A  L  A  A  D  S  R  I  E  I  C  Q  L  P  V  G  D  G  I  T  L  C  R  R  I  S  *  N  I  K  A  L  F  L  K  F  P  L  F  R  I  F  H  Y  F  T  L  Y  F  *  F  C  L  F  W  *  K  I  V  V  Y  V  P  I  D  *  F  Y  N  V  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58520" stop="58314"/>
                    <exon start="58239" stop="58108"/>
                    <exon start="58024" stop="57731"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLHPIRYLLYADIFILWKKNRNLMTTSADEGQFLNMLLKLINAKNTMEIGVFTGYSLLATAMALPDDGKILAMDINRDNYEIGLPVIEKAGLAHKIEFREGPALPVLDQMIEDGQYHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADSRIEICQLPVGDGITLCRRIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="69452" PGL_stop="68183"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69452" e_stop="69328"/>
            <exon e_start="69234" e_stop="69155"/>
            <exon e_start="69069" e_stop="68925"/>
            <exon e_start="68850" e_stop="68719"/>
            <exon e_start="68635" e_stop="68183"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69452" e_stop="69328" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="69327" i_stop="69235" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69234" e_stop="69155" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="69154" i_stop="69070" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69069" e_stop="68925" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="68924" i_stop="68851" i_length="74"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68850" e_stop="68719" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="68718" i_stop="68636" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68635" e_stop="68183" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69452" stop="69328"/>
              <exon start="69234" stop="69155"/>
              <exon start="69069" stop="68925"/>
              <exon start="68850" stop="68719"/>
              <exon start="68635" stop="68473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69452" stop="69328"/>
              <exon start="69234" stop="69155"/>
              <exon start="69069" stop="68925"/>
              <exon start="68850" stop="68719"/>
              <exon start="68635" stop="68549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69442" stop="69328"/>
              <exon start="69234" stop="69155"/>
              <exon start="69069" stop="68925"/>
              <exon start="68850" stop="68719"/>
              <exon start="68635" stop="68471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69442" stop="69328"/>
              <exon start="69234" stop="69155"/>
              <exon start="69069" stop="68925"/>
              <exon start="68850" stop="68719"/>
              <exon start="68635" stop="68567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69440" stop="69328"/>
              <exon start="69234" stop="69155"/>
              <exon start="69069" stop="68925"/>
              <exon start="68850" stop="68719"/>
              <exon start="68635" stop="68329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69440" stop="69328"/>
              <exon start="69234" stop="69155"/>
              <exon start="69069" stop="68925"/>
              <exon start="68850" stop="68719"/>
              <exon start="68635" stop="68547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69440" stop="69328"/>
              <exon start="69234" stop="69155"/>
              <exon start="69069" stop="68925"/>
              <exon start="68850" stop="68719"/>
              <exon start="68635" stop="68552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69440" stop="69328"/>
              <exon start="69234" stop="69155"/>
              <exon start="69069" stop="68925"/>
              <exon start="68850" stop="68801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69434" stop="69328"/>
              <exon start="69234" stop="69155"/>
              <exon start="69069" stop="68925"/>
              <exon start="68850" stop="68719"/>
              <exon start="68635" stop="68477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69019" stop="68925"/>
              <exon start="68850" stop="68719"/>
              <exon start="68635" stop="68564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68764" stop="68719"/>
              <exon start="68635" stop="68194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357786" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68527" stop="68183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282203" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAATCTACATCAGAAACAAAATATAGCTCTTCAATACCAACAAGCAATGGCAAGCAATGGAGAAAATGGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG : TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG : GAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG : ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC : GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATTGACTTGGTTAAGGTTGGTGGAGTAATTGGCTACGATAACACCTTATGGAACGGATCAGTAGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTAGCTGCTGATCCCAGAATTGAAATCTGCCAGCTTCCCGTTGGTGATGGCATTACCCTTTGCCGTCGTATCAGTTAAAATATTCAACATGCCACCCACAGGATTCATAACAACGGGGAATTTTATCATTTTTTAAATTCTCTGTTTTCAGTATTCAATTGCATTGTCTATGCTGTTTATTTCACAGTGTATATTCTTATAAATTAAAAAAGAAATTCATGGTCAGATATGTAATGT</gDNA_template>
            <first_frame> L  I  Y  I  R  N  K  I  *  L  F  N  T  N  K  Q  W  Q  A  M  E  K  M  V  D  T  K  K  L  D  T  R  V  S  C  K  A  M  P  Y  I  S :   T  F  L  K  Q  V  C  T  R  E  S  L  K  P  *  K  S  *  E  R  L  L  Q  N  T  L   : G  T  L  *  P  P  L  L  M  K  V  N  F  *  I  C  F  S  N  S  S  M  P  K  T  P  W  K  L  G  F  L  L  V  T  L  C  W  Q  L  L  W  L  F  L  M  M  A  R :   F  *  Q  W  I  L  T  A  I  T  M  R  L  V  F  Q  *  L  K  R  L  V  *  R  T  K  L  N  S  E  K  A  L  H  F  L  F  L  T  K  *  L  K  T :   A  N  T  M  D  H  M  I  S  Y  L  W  M  L  T  R  T  T  I  *  I  I  T  R  D  *  L  T  W  L  R  L  V  E  *  L  A  T  I  T  P  Y  G  T  D  Q  *  W  H  H  L  M  H  P  L  E  N  T  L  G  I  I  G  I  S  Y  W  N  S  T  R  P  *  L  L  I  P  E  L  K  S  A  S  F  P  L  V  M  A  L  P  F  A  V  V  S  V  K  I  F  N  M  P  P  T  G  F  I  T  T  G  N  F  I  I  F  *  I  L  C  F  Q  Y  S  I  A  L  S  M  L  F  I  S  Q  C  I  F  L  *  I  K  K  E  I  H  G  Q  I  C  N   </first_frame>
            <second_frame>  *  S  T  S  E  T  K  Y  S  S  S  I  P  T  S  N  G  K  Q  W  R  K  W  *  T  P  R  S  W  T  Q  E  S  L  A  K  R  C  P  I  S   : V  H  S  *  N  K  C  V  P  E  R  A  *  S  H  E  R  A  K  R  D  Y  C  K  T  P  L  :  E  P  Y  D  H  L  C  *  *  R  S  I  F  E  Y  A  S  Q  T  H  Q  C  Q  K  H  H  G  N  W  G  F  Y  W  L  L  S  A  G  N  C  Y  G  S  S  *  *  W  Q   : D  S  S  N  G  Y  *  P  R  *  L  *  D  W  S  S  S  N  *  K  G  W  S  S  A  Q  N  *  I  Q  R  R  P  C  T  S  C  S  *  P  N  D  *  R   : R  P  I  P  W  I  I  *  F  H  I  C  G  C  *  Q  G  Q  L  F  E  L  S  Q  E  I  N  *  L  G  *  G  W  W  S  N  W  L  R  *  H  L  M  E  R  I  S  S  G  T  T  *  C  T  P  *  K  I  R  *  V  L  *  G  F  R  I  G  T  Q  Q  G  L  S  C  *  S  Q  N  *  N  L  P  A  S  R  W  *  W  H  Y  P  L  P  S  Y  Q  L  K  Y  S  T  C  H  P  Q  D  S  *  Q  R  G  I  L  S  F  F  K  F  S  V  F  S  I  Q  L  H  C  L  C  C  L  F  H  S  V  Y  S  Y  K  L  K  K  K  F  M  V  R  Y  V  M  </second_frame>
            <third_frame>   N  L  H  Q  K  Q  N  I  A  L  Q  Y  Q  Q  A  M  A  S  N  G  E  N  G  R  H  Q  E  V  G  H  K  S  L  L  Q  S  D  A  L  Y  Q  :  Y  I  L  E  T  S  V  Y  P  R  E  P  E  A  M  K  E  L  R  E  I  T  A  K  H  P  W :   N  L  M  T  T  S  A  D  E  G  Q  F  L  N  M  L  L  K  L  I  N  A  K  N  T  M  E  I  G  V  F  T  G  Y  S  L  L  A  T  A  M  A  L  P  D  D  G  K  :  I  L  A  M  D  I  N  R  D  N  Y  E  I  G  L  P  V  I  E  K  A  G  L  A  H  K  I  E  F  R  E  G  P  A  L  P  V  L  D  Q  M  I  E  D  :  G  Q  Y  H  G  S  Y  D  F  I  F  V  D  A  D  K  D  N  Y  L  N  Y  H  K  R  L  I  D  L  V  K  V  G  G  V  I  G  Y  D  N  T  L  W  N  G  S  V  V  A  P  P  D  A  P  L  R  K  Y  V  R  Y  Y  R  D  F  V  L  E  L  N  K  A  L  A  A  D  P  R  I  E  I  C  Q  L  P  V  G  D  G  I  T  L  C  R  R  I  S  *  N  I  Q  H  A  T  H  R  I  H  N  N  G  E  F  Y  H  F  L  N  S  L  F  S  V  F  N  C  I  V  Y  A  V  Y  F  T  V  Y  I  L  I  N  *  K  R  N  S  W  S  D  M  *  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69450" stop="69328"/>
                    <exon start="69234" stop="69155"/>
                    <exon start="69069" stop="68925"/>
                    <exon start="68850" stop="68719"/>
                    <exon start="68635" stop="68342"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLHQKQNIALQYQQAMASNGENGRHQEVGHKSLLQSDALYQYILETSVYPREPEAMKELREITAKHPWNLMTTSADEGQFLNMLLKLINAKNTMEIGVFTGYSLLATAMALPDDGKILAMDINRDNYEIGLPVIEKAGLAHKIEFREGPALPVLDQMIEDGQYHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICQLPVGDGITLCRRIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="72699" PGL_stop="74150"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72699" e_stop="72733"/>
            <exon e_start="73717" e_stop="74150"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.468" acc_prob="0.000" e_score="0.600"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.600">
            <gDNA_exon_boundary e_start="72699" e_stop="72733" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.468" acc_prob="0.000">
            <gDNA_intron_boundary i_start="72734" i_stop="73716" i_length="983"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="73717" e_stop="74150" e_length="434"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72699" stop="72733"/>
              <exon start="73717" stop="74150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244646" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACAAAATATTGCTCGATTTGATTTATGTAGCGAT : CATTCAACTTGAATTTCTTTCTTTTTTTATTCATCAAATACATTGTGAAATAAGCATTTGGTAACATAGACAATGCAATCTTTTGCCATAATACGAACTAAAATGATAAAATTAAACGAATGAGTAAAACAGGGGATTTCAAAAATGATAAATCCTCTATCGTCATGACTCATGAGTTGTTGATTGCCACCAATAGTACTATACGAATATTTTAACTGATGCGACGGCAAAGAGTGATGCCATCACCAACAGGAAGCTGGCAAATTTCGATTCTGGGATCAGCAGCCAACGCCTTGTTAAGTTCCAATACGAAATCCCTGTAATACCTAACATATTTCCTGAGGGGTGCATCAGGTGGTGCAACTACTGATCCATTCCATAGGGTGTTGTCATAGCCAATTAATCCACCAATCTTGACCAAGTCGATTAATCTC</gDNA_template>
            <first_frame> D  K  I  L  L  D  L  I  Y  V  A  I :   I  Q  L  E  F  L  S  F  F  I  H  Q  I  H  C  E  I  S  I  W  *  H  R  Q  C  N  L  L  P  *  Y  E  L  K  *  *  N  *  T  N  E  *  N  R  G  F  Q  K  *  *  I  L  Y  R  H  D  S  *  V  V  D  C  H  Q  *  Y  Y  T  N  I  L  T  D  A  T  A  K  S  D  A  I  T  N  R  K  L  A  N  F  D  S  G  I  S  S  Q  R  L  V  K  F  Q  Y  E  I  P  V  I  P  N  I  F  P  E  G  C  I  R  W  C  N  Y  *  S  I  P  *  G  V  V  I  A  N  *  S  T  N  L  D  Q  V  D  *  S  </first_frame>
            <second_frame>  T  K  Y  C  S  I  *  F  M  *  R   : S  F  N  L  N  F  F  L  F  L  F  I  K  Y  I  V  K  *  A  F  G  N  I  D  N  A  I  F  C  H  N  T  N  *  N  D  K  I  K  R  M  S  K  T  G  D  F  K  N  D  K  S  S  I  V  M  T  H  E  L  L  I  A  T  N  S  T  I  R  I  F  *  L  M  R  R  Q  R  V  M  P  S  P  T  G  S  W  Q  I  S  I  L  G  S  A  A  N  A  L  L  S  S  N  T  K  S  L  *  Y  L  T  Y  F  L  R  G  A  S  G  G  A  T  T  D  P  F  H  R  V  L  S  *  P  I  N  P  P  I  L  T  K  S  I  N  L </second_frame>
            <third_frame>   Q  N  I  A  R  F  D  L  C  S  D  :  H  S  T  *  I  S  F  F  F  Y  S  S  N  T  L  *  N  K  H  L  V  T  *  T  M  Q  S  F  A  I  I  R  T  K  M  I  K  L  N  E  *  V  K  Q  G  I  S  K  M  I  N  P  L  S  S  *  L  M  S  C  *  L  P  P  I  V  L  Y  E  Y  F  N  *  C  D  G  K  E  *  C  H  H  Q  Q  E  A  G  K  F  R  F  W  D  Q  Q  P  T  P  C  *  V  P  I  R  N  P  C  N  T  *  H  I  S  *  G  V  H  Q  V  V  Q  L  L  I  H  S  I  G  C  C  H  S  Q  L  I  H  Q  S  *  P  S  R  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0055O24.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="75033" PGL_stop="73644"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75033" e_stop="74912"/>
            <exon e_start="74833" e_stop="74754"/>
            <exon e_start="74662" e_stop="74518"/>
            <exon e_start="74441" e_stop="74310"/>
            <exon e_start="74221" e_stop="73644"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75033" e_stop="74912" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="74911" i_stop="74834" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74833" e_stop="74754" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.948">
            <gDNA_intron_boundary i_start="74753" i_stop="74663" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74662" e_stop="74518" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="74517" i_stop="74442" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74441" e_stop="74310" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="74309" i_stop="74222" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="74221" e_stop="73644" e_length="578"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75033" stop="74912"/>
              <exon start="74833" stop="74754"/>
              <exon start="74662" stop="74518"/>
              <exon start="74441" stop="74310"/>
              <exon start="74221" stop="73818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75022" stop="74912"/>
              <exon start="74833" stop="74754"/>
              <exon start="74662" stop="74518"/>
              <exon start="74441" stop="74310"/>
              <exon start="74221" stop="73817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75021" stop="74912"/>
              <exon start="74833" stop="74754"/>
              <exon start="74662" stop="74518"/>
              <exon start="74441" stop="74310"/>
              <exon start="74221" stop="73879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75020" stop="74912"/>
              <exon start="74833" stop="74754"/>
              <exon start="74662" stop="74518"/>
              <exon start="74441" stop="74310"/>
              <exon start="74221" stop="74044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75010" stop="74912"/>
              <exon start="74833" stop="74754"/>
              <exon start="74662" stop="74518"/>
              <exon start="74441" stop="74351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74768" stop="74754"/>
              <exon start="74662" stop="74518"/>
              <exon start="74441" stop="74310"/>
              <exon start="74221" stop="73663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74766" stop="74754"/>
              <exon start="74662" stop="74518"/>
              <exon start="74441" stop="74310"/>
              <exon start="74221" stop="74087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74605" stop="74518"/>
              <exon start="74441" stop="74310"/>
              <exon start="74221" stop="73735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74439" stop="74310"/>
              <exon start="74221" stop="73834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74023" stop="73644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74022" stop="73644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73891" stop="73708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335900" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGTTGGTTGCTTACTATTATCTGTTTCAGAGTCAAAAAAGCAATGGCAACCAACGGAGAAAATGGAAGACATCAAGAAGTTGGACACAAGAGTCTATTGCAAAGTGATGCCCTTTATCAG : TATATTCTTGAAACCAGTGTGTACCCAAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG : GAACCTTATGACCACTTCTGCTGACGAAGGGCAGTTCTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACAATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTTGCTACTGCCATGGCTCTTCCTGATGATGGCAAG : ATTCTAGCCATGGATATCAACCGCGATAACTATGAGATTGGACTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTACCTGTTCTTGACCAAATGATTGAAGAC : GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAATTACTTGAACTATCACAAGAGATTAATCGACTTGGTCAAGATTGGTGGATTAATTGGCTATGACAACACCCTATGGAATGGATCAGTAGTTGCACCACCTGATGCACCCCTCAGGAAATATGTTAGGTATTACAGGGATTTCGTATTGGAACTTAACAAGGCGTTGGCTGCTGATCCCAGAATCGAAATTTGCCAGCTTCCTGTTGGTGATGGCATCACTCTTTGCCGTCGCATCAGTTAAAATATTCGTATAGTACTATTGGTGGCAATCAACAACTCATGAGTCATGACGATAGAGGATTTATCATTTTTGAAATCCCCTGTTTTACTCATTCGTTTAATTTTATCATTTTAGTTCGTATTATGGCAAAAGATTGCATTGTCTATGTTACCAAATGCTTATTTCACAATGTATTTGATGAATAAAAAAAGAAAGAAATTCAAGTTGAATGATCAAATGTACACAAACGTCATATGTCAATGGGGCAATGTCATGCTTATTTTCTGTTCATCTTTGAATTCCAA</gDNA_template>
            <first_frame> Q  V  G  C  L  L  L  S  V  S  E  S  K  K  Q  W  Q  P  T  E  K  M  E  D  I  K  K  L  D  T  R  V  Y  C  K  V  M  P  F  I  S :   I  F  L  K  P  V  C  T  Q  E  S  L  K  P  *  K  S  *  E  R  L  L  Q  N  T  L   : G  T  L  *  P  L  L  L  T  K  G  S  S  *  I  C  F  S  N  S  S  M  P  K  T  Q  W  K  L  G  F  L  L  V  T  L  C  L  L  L  P  W  L  F  L  M  M  A  R :   F  *  P  W  I  S  T  A  I  T  M  R  L  D  F  Q  *  L  K  R  L  V  *  R  T  K  L  N  S  E  K  A  L  H  Y  L  F  L  T  K  *  L  K  T :   A  N  T  M  D  H  M  I  S  Y  L  W  M  L  T  R  T  I  T  *  T  I  T  R  D  *  S  T  W  S  R  L  V  D  *  L  A  M  T  T  P  Y  G  M  D  Q  *  L  H  H  L  M  H  P  S  G  N  M  L  G  I  T  G  I  S  Y  W  N  L  T  R  R  W  L  L  I  P  E  S  K  F  A  S  F  L  L  V  M  A  S  L  F  A  V  A  S  V  K  I  F  V  *  Y  Y  W  W  Q  S  T  T  H  E  S  *  R  *  R  I  Y  H  F  *  N  P  L  F  Y  S  F  V  *  F  Y  H  F  S  S  Y  Y  G  K  R  L  H  C  L  C  Y  Q  M  L  I  S  Q  C  I  *  *  I  K  K  E  R  N  S  S  *  M  I  K  C  T  Q  T  S  Y  V  N  G  A  M  S  C  L  F  S  V  H  L  *  I  P  </first_frame>
            <second_frame>  R  L  V  A  Y  Y  Y  L  F  Q  S  Q  K  S  N  G  N  Q  R  R  K  W  K  T  S  R  S  W  T  Q  E  S  I  A  K  *  C  P  L  S   : V  Y  S  *  N  Q  C  V  P  K  R  A  *  S  H  E  R  A  K  R  D  Y  C  K  T  P  L  :  E  P  Y  D  H  F  C  *  R  R  A  V  L  E  Y  A  S  Q  T  H  Q  C  Q  K  H  N  G  N  W  G  F  Y  W  L  L  S  A  C  Y  C  H  G  S  S  *  *  W  Q   : D  S  S  H  G  Y  Q  P  R  *  L  *  D  W  T  S  S  N  *  K  G  W  S  S  A  Q  N  *  I  Q  R  R  P  C  T  T  C  S  *  P  N  D  *  R   : R  P  I  P  W  I  I  *  F  H  I  C  G  C  *  Q  G  Q  L  L  E  L  S  Q  E  I  N  R  L  G  Q  D  W  W  I  N  W  L  *  Q  H  P  M  E  W  I  S  S  C  T  T  *  C  T  P  Q  E  I  C  *  V  L  Q  G  F  R  I  G  T  *  Q  G  V  G  C  *  S  Q  N  R  N  L  P  A  S  C  W  *  W  H  H  S  L  P  S  H  Q  L  K  Y  S  Y  S  T  I  G  G  N  Q  Q  L  M  S  H  D  D  R  G  F  I  I  F  E  I  P  C  F  T  H  S  F  N  F  I  I  L  V  R  I  M  A  K  D  C  I  V  Y  V  T  K  C  L  F  H  N  V  F  D  E  *  K  K  K  E  I  Q  V  E  *  S  N  V  H  K  R  H  M  S  M  G  Q  C  H  A  Y  F  L  F  I  F  E  F  Q </second_frame>
            <third_frame>   G  W  L  L  T  I  I  C  F  R  V  K  K  A  M  A  T  N  G  E  N  G  R  H  Q  E  V  G  H  K  S  L  L  Q  S  D  A  L  Y  Q  :  Y  I  L  E  T  S  V  Y  P  R  E  P  E  A  M  K  E  L  R  E  I  T  A  K  H  P  W :   N  L  M  T  T  S  A  D  E  G  Q  F  L  N  M  L  L  K  L  I  N  A  K  N  T  M  E  I  G  V  F  T  G  Y  S  L  L  A  T  A  M  A  L  P  D  D  G  K  :  I  L  A  M  D  I  N  R  D  N  Y  E  I  G  L  P  V  I  E  K  A  G  L  A  H  K  I  E  F  R  E  G  P  A  L  P  V  L  D  Q  M  I  E  D  :  G  Q  Y  H  G  S  Y  D  F  I  F  V  D  A  D  K  D  N  Y  L  N  Y  H  K  R  L  I  D  L  V  K  I  G  G  L  I  G  Y  D  N  T  L  W  N  G  S  V  V  A  P  P  D  A  P  L  R  K  Y  V  R  Y  Y  R  D  F  V  L  E  L  N  K  A  L  A  A  D  P  R  I  E  I  C  Q  L  P  V  G  D  G  I  T  L  C  R  R  I  S  *  N  I  R  I  V  L  L  V  A  I  N  N  S  *  V  M  T  I  E  D  L  S  F  L  K  S  P  V  L  L  I  R  L  I  L  S  F  *  F  V  L  W  Q  K  I  A  L  S  M  L  P  N  A  Y  F  T  M  Y  L  M  N  K  K  R  K  K  F  K  L  N  D  Q  M  Y  T  N  V  I  C  Q  W  G  N  V  M  L  I  F  C  S  S  L  N  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75031" stop="74912"/>
                    <exon start="74833" stop="74754"/>
                    <exon start="74662" stop="74518"/>
                    <exon start="74441" stop="74310"/>
                    <exon start="74221" stop="73928"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GWLLTIICFRVKKAMATNGENGRHQEVGHKSLLQSDALYQYILETSVYPREPEAMKELREITAKHPWNLMTTSADEGQFLNMLLKLINAKNTMEIGVFTGYSLLATAMALPDDGKILAMDINRDNYEIGLPVIEKAGLAHKIEFREGPALPVLDQMIEDGQYHGSYDFIFVDADKDNYLNYHKRLIDLVKIGGLIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICQLPVGDGITLCRRIS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73958" stop="73743"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WHHSLPSHQLKYSYSTIGGNQQLMSHDDRGFIIFEIPCFTHSFNFIILVRIMAKDCIVYVTKCLFHNVFDE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="85059" PGL_stop="86360"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85059" e_stop="85462"/>
            <exon e_start="85597" e_stop="85698"/>
            <exon e_start="85782" e_stop="85847"/>
            <exon e_start="85972" e_stop="86037"/>
            <exon e_start="86315" e_stop="86360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.802" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85059" e_stop="85462" e_length="404"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="85463" i_stop="85596" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85597" e_stop="85698" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.929">
            <gDNA_intron_boundary i_start="85699" i_stop="85781" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85782" e_stop="85847" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.802" acc_prob="0.991">
            <gDNA_intron_boundary i_start="85848" i_stop="85971" i_length="124"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85972" e_stop="86037" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.963">
            <gDNA_intron_boundary i_start="86038" i_stop="86314" i_length="277"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86315" e_stop="86360" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85059" stop="85462"/>
              <exon start="85597" stop="85698"/>
              <exon start="85782" stop="85847"/>
              <exon start="85972" stop="85994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85060" stop="85462"/>
              <exon start="85597" stop="85698"/>
              <exon start="85782" stop="85847"/>
              <exon start="85972" stop="86037"/>
              <exon start="86315" stop="86328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85099" stop="85462"/>
              <exon start="85597" stop="85698"/>
              <exon start="85782" stop="85847"/>
              <exon start="85972" stop="86037"/>
              <exon start="86315" stop="86360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85100" stop="85462"/>
              <exon start="85597" stop="85698"/>
              <exon start="85782" stop="85847"/>
              <exon start="85972" stop="86035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85100" stop="85462"/>
              <exon start="85597" stop="85698"/>
              <exon start="85782" stop="85847"/>
              <exon start="85972" stop="86012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85100" stop="85462"/>
              <exon start="85597" stop="85698"/>
              <exon start="85782" stop="85847"/>
              <exon start="85972" stop="85982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85100" stop="85462"/>
              <exon start="85597" stop="85698"/>
              <exon start="85782" stop="85790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85100" stop="85462"/>
              <exon start="85597" stop="85630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85100" stop="85462"/>
              <exon start="85597" stop="85618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85100" stop="85462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85100" stop="85402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATTAACTTGATCTGCTCAACACTGAACTTGATTTTGCTGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG : GATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAG : AGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAG : ACTGACAAGGCTTCAATGCTTGATGAAGCCATTGAGTATCTTAAGCAGCTTCAGCTCCAAGTACAG : ATGTTGACAATGAGAAACGGGTTAAACATGTATCCTCTTGGCCTGC</gDNA_template>
            <first_frame> Q  N  *  L  D  L  L  N  T  E  L  D  F  A  G  L  *  W  P  T  T  M  F  I  I  T  M  L  I  F  L  *  L  I  L  I  L  N  Q  M  I  F  L  C  F  F  V  I  F  Y  F  L  L  R  L  R  L  H  L  H  L  I  L  W  P  *  R  V  M  K  C  N  I  P  H  H  Y  L  I  L  C  L  I  I  I  N  R  V  I  C  H  P  *  *  I  H  Q  L  A  A  F  S  R  L  P  M  G  F  V  M  V  Q  L  L  F  L  P  H  L  L  G  P  *  I  T  I  R  M  S  M  N  V  K  V  R :   M  V  Q  R  I  W  G  R  K  L  Q  F  N  R  H  L  V  T  L  P  R  E  A  E  Q  L  K  C  T  I  C  L  K  R :   G  E  E  A  G  L  M  R  R  *  K  H  C  K  N  L  F  Q  I  Q  I  R :   L  T  R  L  Q  C  L  M  K  P  L  S  I  L  S  S  F  S  S  K  Y  R :   C  *  Q  *  E  T  G  *  T  C  I  L  L  A  C </first_frame>
            <second_frame>  K  I  N  L  I  C  S  T  L  N  L  I  L  L  D  Y  N  G  Q  Q  Q  C  L  L  S  Q  C  *  F  F  F  D  *  S  *  S  *  T  R  *  Y  F  C  V  S  S  S  Y  S  T  S  F  F  V  F  V  F  I  F  I  *  F  Y  G  P  E  E  *  *  N  A  I  F  L  I  I  T  S  S  Y  A  *  *  *  S  T  G  *  F  V  I  H  D  E  F  I  S  L  R  H  F  L  V  F  L  W  G  L  *  W  C  N  Y  C  F  F  L  I  C  W  D  H  R  L  R  S  G  *  V  *  M  *  K  *   : G  W  Y  R  G  F  G  G  G  S  F  S  S  T  A  I  S  *  H  F  Q  E  K  Q  S  S  *  S  A  Q  F  V  *  K   : E  E  K  K  Q  D  *  *  E  D  E  S  I  A  K  T  Y  S  K  F  K  *   : D  *  Q  G  F  N  A  *  *  S  H  *  V  S  *  A  A  S  A  P  S  T   : D  V  D  N  E  K  R  V  K  H  V  S  S  W  P   </second_frame>
            <third_frame>   K  L  T  *  S  A  Q  H  *  T  *  F  C  W  T  I  M  A  N  N  N  V  Y  Y  H  N  A  N  F  S  L  T  D  P  D  P  E  P  D  D  I  S  V  F  L  R  H  I  L  L  P  S  S  S  S  S  S  S  S  S  N  F  M  A  L  K  S  N  E  M  Q  Y  S  S  S  L  P  H  L  M  P  N  N  N  Q  Q  G  N  L  S  S  M  M  N  S  S  A  C  G  I  F  S  S  S  Y  G  V  C  N  G  A  T  T  V  S  S  S  S  V  G  T  I  D  Y  D  P  D  E  Y  E  C  E  S  E  :  D  G  T  E  D  L  G  A  E  A  S  V  Q  P  P  S  R  N  T  S  K  R  S  R  A  A  E  V  H  N  L  S  E  K  :  R  R  R  S  R  I  N  E  K  M  K  A  L  Q  K  L  I  P  N  S  N  K  :  T  D  K  A  S  M  L  D  E  A  I  E  Y  L  K  Q  L  Q  L  Q  V  Q  :  M  L  T  M  R  N  G  L  N  M  Y  P  L  G  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85094" stop="85462"/>
                    <exon start="85597" stop="85698"/>
                    <exon start="85782" stop="85847"/>
                    <exon start="85972" stop="86037"/>
                    <exon start="86315" stop="86359"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCWTIMANNNVYYHNANFSLTDPDPEPDDISVFLRHILLPSSSSSSSSSNFMALKSNEMQYSSSLPHLMPNNNQQGNLSSMMNSSACGIFSSSYGVCNGATTVSSSSVGTIDYDPDEYECESEDGTEDLGAEASVQPPSRNTSKRSRAAEVHNLSEKRRRSRINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLTMRNGLNMYPLGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="86390" PGL_stop="87371"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86390" e_stop="86632"/>
            <exon e_start="86744" e_stop="86813"/>
            <exon e_start="86904" e_stop="87054"/>
            <exon e_start="87172" e_stop="87371"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.837" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.534" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86390" e_stop="86632" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.900">
            <gDNA_intron_boundary i_start="86633" i_stop="86743" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86744" e_stop="86813" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.837" acc_prob="0.997">
            <gDNA_intron_boundary i_start="86814" i_stop="86903" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86904" e_stop="87054" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.534">
            <gDNA_intron_boundary i_start="87055" i_stop="87171" i_length="117"/>
          </intron>
          <exon e_serial="4" e_score="0.965">
            <gDNA_exon_boundary e_start="87172" e_stop="87371" e_length="200"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86390" stop="86632"/>
              <exon start="86744" stop="86813"/>
              <exon start="86904" stop="87054"/>
              <exon start="87172" stop="87371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390441" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCAAAAAGTAGGTTTGTGCGAGGGGAATGCATTCACAAATGCCAAAGTGGCTGGGAATCTACAAGTTAACCAAGACGCCTCGTTAAATGCTATTTTCAACCCAACTGAAAATTGTACAGAAACTAAGGTAACACCACCGATAACTATGTCAAATATAAACCGGTCAGACAGTGCGTTTGAGCTTGAGTCATCGATGAATATTCACCTTGATCCCTTTCAGCTCTCAAGATCTACCAGCAAG : GAAATTTGGAGGGAGGATGACTTACCTTTATATGGTATGAATGAGCTAACGACCAAAACTGCATCAACTG : GATCAAATCTGGCATTCTCAGTTCCCCTAGATACGGATGCATCTAACCTGAAGAGAAGCACTCGGGAGGCCTGCTTGCTTCGATATCAGTTTGGTGCTGTGAATGAAACCAATCTGGATTGTGACCAACTTCTTTCCCAACAACTGTATAG : CAACTTCTGAATTTTGGCCTGCATCGCCTTGCTGGATTTTGTTGAAGTAATGAGACATGCATTTTGCTGCTTAGGACGTTTAATGTTGTTAACTTTTGGGCTCACTAGCCACTGTAATGAATGAATGGAATATAAATGAAAAGATTGGACTAGTTTCTATCTTGTTATGAAATACGAAAATTACTACTAGGCATAGGATA</gDNA_template>
            <first_frame> H  Q  K  V  G  L  C  E  G  N  A  F  T  N  A  K  V  A  G  N  L  Q  V  N  Q  D  A  S  L  N  A  I  F  N  P  T  E  N  C  T  E  T  K  V  T  P  P  I  T  M  S  N  I  N  R  S  D  S  A  F  E  L  E  S  S  M  N  I  H  L  D  P  F  Q  L  S  R  S  T  S  K  :  E  I  W  R  E  D  D  L  P  L  Y  G  M  N  E  L  T  T  K  T  A  S  T   : G  S  N  L  A  F  S  V  P  L  D  T  D  A  S  N  L  K  R  S  T  R  E  A  C  L  L  R  Y  Q  F  G  A  V  N  E  T  N  L  D  C  D  Q  L  L  S  Q  Q  L  Y  S :   N  F  *  I  L  A  C  I  A  L  L  D  F  V  E  V  M  R  H  A  F  C  C  L  G  R  L  M  L  L  T  F  G  L  T  S  H  C  N  E  *  M  E  Y  K  *  K  D  W  T  S  F  Y  L  V  M  K  Y  E  N  Y  Y  *  A  *  D  </first_frame>
            <second_frame>  I  K  K  *  V  C  A  R  G  M  H  S  Q  M  P  K  W  L  G  I  Y  K  L  T  K  T  P  R  *  M  L  F  S  T  Q  L  K  I  V  Q  K  L  R  *  H  H  R  *  L  C  Q  I  *  T  G  Q  T  V  R  L  S  L  S  H  R  *  I  F  T  L  I  P  F  S  S  Q  D  L  P  A  R :   K  F  G  G  R  M  T  Y  L  Y  M  V  *  M  S  *  R  P  K  L  H  Q  L  :  D  Q  I  W  H  S  Q  F  P  *  I  R  M  H  L  T  *  R  E  A  L  G  R  P  A  C  F  D  I  S  L  V  L  *  M  K  P  I  W  I  V  T  N  F  F  P  N  N  C  I   : A  T  S  E  F  W  P  A  S  P  C  W  I  L  L  K  *  *  D  M  H  F  A  A  *  D  V  *  C  C  *  L  L  G  S  L  A  T  V  M  N  E  W  N  I  N  E  K  I  G  L  V  S  I  L  L  *  N  T  K  I  T  T  R  H  R  I </second_frame>
            <third_frame>   S  K  S  R  F  V  R  G  E  C  I  H  K  C  Q  S  G  W  E  S  T  S  *  P  R  R  L  V  K  C  Y  F  Q  P  N  *  K  L  Y  R  N  *  G  N  T  T  D  N  Y  V  K  Y  K  P  V  R  Q  C  V  *  A  *  V  I  D  E  Y  S  P  *  S  L  S  A  L  K  I  Y  Q  Q   : G  N  L  E  G  G  *  L  T  F  I  W  Y  E  *  A  N  D  Q  N  C  I  N  W :   I  K  S  G  I  L  S  S  P  R  Y  G  C  I  *  P  E  E  K  H  S  G  G  L  L  A  S  I  S  V  W  C  C  E  *  N  Q  S  G  L  *  P  T  S  F  P  T  T  V  *  :  Q  L  L  N  F  G  L  H  R  L  A  G  F  C  *  S  N  E  T  C  I  L  L  L  R  T  F  N  V  V  N  F  W  A  H  *  P  L  *  *  M  N  G  I  *  M  K  R  L  D  *  F  L  S  C  Y  E  I  R  K  L  L  L  G  I  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86390" stop="86632"/>
                    <exon start="86744" stop="86813"/>
                    <exon start="86904" stop="87054"/>
                    <exon start="87172" stop="87181"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HQKVGLCEGNAFTNAKVAGNLQVNQDASLNAIFNPTENCTETKVTPPITMSNINRSDSAFELESSMNIHLDPFQLSRSTSKEIWREDDLPLYGMNELTTKTASTGSNLAFSVPLDTDASNLKRSTREACLLRYQFGAVNETNLDCDQLLSQQLYSNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="89354" PGL_stop="94780"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89354" e_stop="89426"/>
            <exon e_start="90302" e_stop="90421"/>
            <exon e_start="90542" e_stop="90676"/>
            <exon e_start="90757" e_stop="90818"/>
            <exon e_start="91166" e_stop="91241"/>
            <exon e_start="92133" e_stop="92234"/>
            <exon e_start="93095" e_stop="93211"/>
            <exon e_start="93515" e_stop="93573"/>
            <exon e_start="94602" e_stop="94780"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.774" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89354" e_stop="89426" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.928">
            <gDNA_intron_boundary i_start="89427" i_stop="90301" i_length="875"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90302" e_stop="90421" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.774" acc_prob="0.879">
            <gDNA_intron_boundary i_start="90422" i_stop="90541" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90542" e_stop="90676" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.953">
            <gDNA_intron_boundary i_start="90677" i_stop="90756" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90757" e_stop="90818" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.992">
            <gDNA_intron_boundary i_start="90819" i_stop="91165" i_length="347"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91166" e_stop="91241" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.956" acc_prob="0.988">
            <gDNA_intron_boundary i_start="91242" i_stop="92132" i_length="891"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="92133" e_stop="92234" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.947" acc_prob="0.985">
            <gDNA_intron_boundary i_start="92235" i_stop="93094" i_length="860"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="93095" e_stop="93211" e_length="117"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="93212" i_stop="93514" i_length="303"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="93515" e_stop="93573" e_length="59"/>
          </exon>
          <intron i_serial="8" don_prob="0.979" acc_prob="0.996">
            <gDNA_intron_boundary i_start="93574" i_stop="94601" i_length="1028"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="94602" e_stop="94780" e_length="179"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89354" stop="89426"/>
              <exon start="90302" stop="90421"/>
              <exon start="90542" stop="90676"/>
              <exon start="90757" stop="90818"/>
              <exon start="91166" stop="91241"/>
              <exon start="92133" stop="92234"/>
              <exon start="93095" stop="93211"/>
              <exon start="93515" stop="93573"/>
              <exon start="94602" stop="94739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92161" stop="92234"/>
              <exon start="93095" stop="93211"/>
              <exon start="93515" stop="93573"/>
              <exon start="94602" stop="94780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92161" stop="92234"/>
              <exon start="93095" stop="93211"/>
              <exon start="93515" stop="93573"/>
              <exon start="94602" stop="94765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTATTGCTAATTTTAAATTTACTGAGGATGAGATAGCTTTCATCAGGTCATCGTTGCCATCGTCATGTGAG : GATGGCTTCTTTGAATACCTTCGAAGACTTGACTGTTCAGATATTGAGATATATTCTATTTCTGAAGGATCAGTAGTTTTTCCCAAGGTACCGCTGATGAGGATTGAAGGACCAGTTGCT : GTGGTTCAACTACTGGAAACACCATTTGTAAACCTCATAAATTATGCATCACTAGTTACTACTAATGCTGCAAGACACCGTTTCGTTGCTGGAAGGTCCAAAATATTGCTTGAATTTGGGCTTAGGAGAGCACAG : GGTCCTGATGGTGGTATATCAGCATCCAAGTATTGCTACATGGGTGGATTTGATGCGACAAG : CAATGTGGCAGCTGGAAAGCTGTTTGGAATCCCACTCCGTGGGACACATTCCCATGCCTTTGTTAGCTCATTTCTG : AGCCCAGATGAGATCATAGAGAAATCACTTCAACATCATAATGGTTCTAGTGTTTGTGAGGATTTTGTTAGTCTGGTACAGACATGGCTTGATAAATTAAAG : TGGTCACACTTATTGGGTGGAATTTTCAGCGAGACAAATCAAAGTGAGTTAGCCGCTTTCGCCTCGTATGCACTTGCATTTCCTGGAAGTTTTTTGGCCCTTGTAGACACTTATGAT : GTCATGAGAAGTGGTCTTCCAAATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGG : GTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAAGTAA</gDNA_template>
            <first_frame> V  Y  C  *  F  *  I  Y  *  G  *  D  S  F  H  Q  V  I  V  A  I  V  M  *   : G  W  L  L  *  I  P  S  K  T  *  L  F  R  Y  *  D  I  F  Y  F  *  R  I  S  S  F  S  Q  G  T  A  D  E  D  *  R  T  S  C   : C  G  S  T  T  G  N  T  I  C  K  P  H  K  L  C  I  T  S  Y  Y  *  C  C  K  T  P  F  R  C  W  K  V  Q  N  I  A  *  I  W  A  *  E  S  T   : G  S  *  W  W  Y  I  S  I  Q  V  L  L  H  G  W  I  *  C  D  K  :  Q  C  G  S  W  K  A  V  W  N  P  T  P  W  D  T  F  P  C  L  C  *  L  I  S   : E  P  R  *  D  H  R  E  I  T  S  T  S  *  W  F  *  C  L  *  G  F  C  *  S  G  T  D  M  A  *  *  I  K   : V  V  T  L  I  G  W  N  F  Q  R  D  K  S  K  *  V  S  R  F  R  L  V  C  T  C  I  S  W  K  F  F  G  P  C  R  H  L  *   : C  H  E  K  W  S  S  K  F  L  C  S  C  S  C  T  *  *  F  G  :  V  *  S  S  G  H  *  T  R  L  W  *  S  C  L  S  V  M  *  S  *  E  I  L  L  C  Y  *  E  R  I  W  I  A  W  F  C  K  D  E  Y  H  S  *  Q  *  S  *  *  R  N  S  G  C  T  K  *  T  S   </first_frame>
            <second_frame>  F  I  A  N  F  K  F  T  E  D  E  I  A  F  I  R  S  S  L  P  S  S  C  E  :  D  G  F  F  E  Y  L  R  R  L  D  C  S  D  I  E  I  Y  S  I  S  E  G  S  V  V  F  P  K  V  P  L  M  R  I  E  G  P  V  A  :  V  V  Q  L  L  E  T  P  F  V  N  L  I  N  Y  A  S  L  V  T  T  N  A  A  R  H  R  F  V  A  G  R  S  K  I  L  L  E  F  G  L  R  R  A  Q  :  G  P  D  G  G  I  S  A  S  K  Y  C  Y  M  G  G  F  D  A  T  S :   N  V  A  A  G  K  L  F  G  I  P  L  R  G  T  H  S  H  A  F  V  S  S  F  L  :  S  P  D  E  I  I  E  K  S  L  Q  H  H  N  G  S  S  V  C  E  D  F  V  S  L  V  Q  T  W  L  D  K  L  K  :  W  S  H  L  L  G  G  I  F  S  E  T  N  Q  S  E  L  A  A  F  A  S  Y  A  L  A  F  P  G  S  F  L  A  L  V  D  T  Y  D  :  V  M  R  S  G  L  P  N  F  C  A  V  A  L  A  L  N  D  L  G :   Y  K  A  V  G  I  R  L  D  S  G  D  L  A  Y  Q  S  C  E  A  R  K  F  F  C  A  I  E  K  E  F  G  L  P  G  F  A  K  T  S  I  T  A  S  N  D  L  N  E  E  T  L  D  A  L  N  K  Q  V  </second_frame>
            <third_frame>   L  L  L  I  L  N  L  L  R  M  R  *  L  S  S  G  H  R  C  H  R  H  V  R :   M  A  S  L  N  T  F  E  D  L  T  V  Q  I  L  R  Y  I  L  F  L  K  D  Q  *  F  F  P  R  Y  R  *  *  G  L  K  D  Q  L  L :   W  F  N  Y  W  K  H  H  L  *  T  S  *  I  M  H  H  *  L  L  L  M  L  Q  D  T  V  S  L  L  E  G  P  K  Y  C  L  N  L  G  L  G  E  H  R :   V  L  M  V  V  Y  Q  H  P  S  I  A  T  W  V  D  L  M  R  Q   : A  M  W  Q  L  E  S  C  L  E  S  H  S  V  G  H  I  P  M  P  L  L  A  H  F  * :   A  Q  M  R  S  *  R  N  H  F  N  I  I  M  V  L  V  F  V  R  I  L  L  V  W  Y  R  H  G  L  I  N  *  S :   G  H  T  Y  W  V  E  F  S  A  R  Q  I  K  V  S  *  P  L  S  P  R  M  H  L  H  F  L  E  V  F  W  P  L  *  T  L  M  M :   S  *  E  V  V  F  Q  I  F  V  Q  L  L  L  H  L  M  I  W   : G  I  K  Q  W  A  L  D  *  T  L  V  I  L  L  I  S  H  V  K  L  G  N  S  F  V  L  L  R  K  N  L  D  C  L  V  L  Q  R  R  V  S  Q  L  A  M  I  L  M  K  K  L  W  M  H  *  I  N  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89355" stop="89426"/>
                    <exon start="90302" stop="90421"/>
                    <exon start="90542" stop="90676"/>
                    <exon start="90757" stop="90818"/>
                    <exon start="91166" stop="91241"/>
                    <exon start="92133" stop="92234"/>
                    <exon start="93095" stop="93211"/>
                    <exon start="93515" stop="93573"/>
                    <exon start="94602" stop="94779"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>921</number_coding_nucleotides>
                  <number_encoded_amino_acids>307</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIANFKFTEDEIAFIRSSLPSSCEDGFFEYLRRLDCSDIEIYSISEGSVVFPKVPLMRIEGPVAVVQLLETPFVNLINYASLVTTNAARHRFVAGRSKILLEFGLRRAQGPDGGISASKYCYMGGFDATSNVAAGKLFGIPLRGTHSHAFVSSFLSPDEIIEKSLQHHNGSSVCEDFVSLVQTWLDKLKWSHLLGGIFSETNQSELAAFASYALAFPGSFLALVDTYDVMRSGLPNFCAVALALNDLGYKAVGIRLDSGDLAYQSCEARKFFCAIEKEFGLPGFAKTSITASNDLNEETLDALNKQV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 162 chains have been computed
$ 
$ memory statistics:
$ 378432 bytes spliced alignments in total
$ 104 spliced alignments have been stored
$ 3638 bytes was the average size of a spliced alignment
$ 22240 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1710 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 181 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:28:07
-->
