<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:30:55"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575599" ref_strand="+" ref_description="SGN-U575599 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157345159|emb|CAO71887.1| (e_value=2e-119) unnamed; (*ATH) AT4G34090.1 (e_value=5e-117) | Symbol: None | expressed protein | chr4:16328019-16330183 REVERSE | Aliases: F28A23.150, F28A23_150; ">
      <seq>gcacacaagtaatatcaggaaagataatgaagttgggtggtggagtgggttttggatgtccacgcgccgtcgcatttcccggcattttattcagccgctgccgaccaacattccgatgctattcctcttcttcttctccagaccatgtatcatttatcaaagatgtagctgcaactcaagcaccggaacatttgaatgaacttctcaaaatccttcaggtgagaggtgaagaaataatttctcctggtgccaagcaagggctggttcctctagtgattcctctttccagaaggagttcagattctgtaactgcactgttacgatggccaactgccccatctgggatggagatgccgttggtagaagtgcgcaagtatggtgtgtggctattatctaagaatgtagatcagtacattcacagggttttggcggaagaagatgcaaacggtaatcaagaaaaagtagatgaattattccggatttcagctggtgctggaaagaaactttatgagaagggtgattttggagcatcaaaaatttcaaacatagatacttatatattgaagaaggttggcttgtttccagatgtactggagcgcagaattaagcaacattttgacaatggagacaatatttcagctttggtgacgggagaattttatacaaagaaggagcattttccaggatttgcgcgaccttttgtctttaatgctgaagttttgctgaaggttgggcgcaatatagaagctaaagatgctgctaggggggctttaaaatcaccatggtggactttgggttgcgaataccatgaagttgctaatatggctgaatgggaagatgaacaaattgagtatatcaaagagaaagtaactgaggagggtagggaagccgatctaaagaaagggaagcaacctgctcaggttgcattggatgaagctgctttcttgttggatctagcttccattgacggttcatgggacgattgtgcagaaaggattgctgaatgctacaaggaggcgggcctgcatgaagttgcaaactttgtggtttacagagactgaaataccagcaactttgctgaatattaaacgtcttacactactccctatgagtcctagtaagtggcctattcagttttgcctccagcagagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="6488" stop="2977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6189" g_stop="6049" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6048" i_stop="5741" i_length="308">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5740" g_stop="5657" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="225" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5656" i_stop="5061" i_length="596">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.632" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5060" g_stop="4986" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="300" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4985" i_stop="4895" i_length="91">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4894" g_stop="4852" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="343" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4851" i_stop="4703" i_length="149">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4702" g_stop="4645" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="401" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4644" i_stop="4514" i_length="131">
            <donor d_prob="0.737" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4513" g_stop="4346" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="569" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4345" i_stop="4263" i_length="83">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4262" g_stop="4200" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="632" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4199" i_stop="4122" i_length="78">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4121" g_stop="4027" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="727" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4026" i_stop="3926" i_length="101">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="3925" g_stop="3844" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="809" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="3843" i_stop="3758" i_length="86">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="3757" g_stop="3647" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="810" r_stop="920" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="3646" i_stop="3511" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="3510" g_stop="3277" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="921" r_stop="1154" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-U575599" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1154</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6189" e_stop="6049"/>
          <exon e_start="5740" e_stop="5657"/>
          <exon e_start="5060" e_stop="4986"/>
          <exon e_start="4894" e_stop="4852"/>
          <exon e_start="4702" e_stop="4645"/>
          <exon e_start="4513" e_stop="4346"/>
          <exon e_start="4262" e_stop="4200"/>
          <exon e_start="4121" e_stop="4027"/>
          <exon e_start="3925" e_stop="3844"/>
          <exon e_start="3757" e_stop="3647"/>
          <exon e_start="3510" e_stop="3277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACAAGTAATATCAGGAAAGATAATGAAGTTGGGTGGTGGAGTGGGTTTTGGATGTCCACGCGCCGTCGCATTTCCCGGCATTTTATTCAGCCGCTGCCGACCAACATTCCGATGCTATTCCTCTTCTTCTTCTCCAGGTAAAGAAAACTGCAAACCTACAAATACTTCTTCCGTGTTTATTTGTACATGTATTGTCTAGCCGAATGCCGATGTCTACTAGTTTTGAAATGAGGTCTAGTTGATTGATATAATTGAAATAAAATGTGGATTAACCAATCGGAGATCGTTCACTGCCGTGCCATGTTAGTATGAATTGCATCACTGCCGTGAGGTTTTTTGTCTAGTCTAATTTGATACTAGTTGGTTGCTACTGCACCAATTCACATGTGTTTTGAATGCACAGATTCGTATTTGAAATGATGGAAGTGGTATTTTTTCAATGCAGACCATGTATCATTTATCAAAGATGTAGCTGCAACTCAAGCACCGGAACATTTGAATGAACTTCTCAAAATCCTTCAGGTGAGAGGTGAGGCAATCTAATTCCATTATTTAAAATTTTGATTAATTTGAGTATGCTTCTATTAGAAAATAAATATTAAATGGAGAAGCCTGCTATAATCCTTATATTAGCTCTCGACAGTTATACTGAAACCACTCTTTGGAAACTTACCTTTTTTATGTATATATCACGATATAACTGGTCATAGGTGCTTCTAGTTTTAGTTAGTGTTAGAGTTACCTTTTTCATGTATATATCACAATAACTGGTCAGGAGTGCTTCCAGTTCTAGTTAGAGTTTTAAAAAAAGTACTTTTCCTTACCTGTAGGTCCTCTTCAATGTTTGTTTCACAGTTATAGTTAGGAGTAACTTATCGTTACTGAAACTTGAGGTGTCAGGGGGGGGTCCTGTTAGGGTAATCTTTTGTTTCTCTTGGTTACTTGATATTAAGGAAGTGTCATAGGATGACCTGGTACGCCCGACAAAGACTTGGGTAATATCCTTTCATAGGCTTACTTAGATGAGATTTTTGGCTTAGGTTGTTATTGATAGTTTGATTGTCAACATAACTGATGTCTGATGGTCTCTATGAACCTCATGCACTGCTCAACACCTTATGATAGGTGAAGAAATAATTTCTCCTGGTGCCAAGCAAGGGCTGGTTCCTCTAGTGATTCCTCTTTCCAGAAGGAGTTCAGGTATGGTGGAGAAATTGGATCTGATATCAAGCTTTTCTAAAGTTGAAAGCGTGCTTCTATGTTCATTTTTTTTCCTTCTCTTCTTTTGTAGATTCTGTAACTGCACTGTTACGATGGCCAACTGCCCCATCTGGGTAATATTATTCATCAAAATGCTGAGTTTTGTGGATATCTCTGTTCTACTTTTTGGGTGCTTATCTCGGTTTATTCTCCGGTCTCCTAATTGCTCTCAGGAAAAGGGGGAAAATATTTTGTATCTGATTTACATCTTCATTGTTTACAGGATGGAGATGCCGTTGGTAGAAGTGCGCAAGTATGGTGTGTGGCTATTATCTAAGAATGTAAGCTACTATGAACTTGCTCTACTACTTGGGATCTGGATGATGTTTGATAGGGTTAATTGCTTCACTCTTGCATTCTGCTTTGGTAGCATGCACAAATTTATCCCACCTTTCCTTTTACCATGCTATAGGTAGATCAGTACATTCACAGGGTTTTGGCGGAAGAAGATGCAAACGGTAATCAAGAAAAAGTAGATGAATTATTCCGGATTTCAGCTGGTGCTGGAAAGAAACTTTATGAGAAGGGTGATTTTGGAGCATCAAAAATTTCAAACATAGATACTTATATATTGAAGAAGGTAGAAGGAAGGATGTATACGGCAATATCTTGATGATGGTCATTGTGACTCAAGCTAATTGCACTTATTGATATTTTCTCTAGGTTGGCTTGTTTCCAGATGTACTGGAGCGCAGAATTAAGCAACATTTTGACAATGGAGACAATGTAAGAAAGTTCTTTTTTATCTAGTAAGCAATGCTCAATCCATTGCATTTGGGTGATATATATACGTGCTGTTGGAAGATTTCAGCTTTGGTGACGGGAGAATTTTATACAAAGAAGGAGCATTTTCCAGGATTTGCGCGACCTTTTGTCTTTAATGCTGAAGTTTTGCTGAAGTCTGTAATATCTCATAGTTTTTCTTCCTCAATAAATCTGTGTATTTATAAAACAAGTTATTCTACAACATATTTACTCATATAGTTCTCTTCTTCTCTAGGGTTGGGCGCAATATAGAAGCTAAAGATGCTGCTAGGGGGGCTTTAAAATCACCATGGTGGACTTTGGGTTGCGAATACCATGTACGCAATTCCTTGATCCAATCAATTTGTTTTTGCCTTTTGCAGCATGCTGATGCTAGGTCTATCTGGTTCTCTCTTTATTGCAGGAAGTTGCTAATATGGCTGAATGGGAAGATGAACAAATTGAGTATATCAAAGAGAAAGTAACTGAGGAGGGTAGGGAAGCCGATCTAAAGAAAGGGAAGCAACCTGCTCAGGTATCACTAAACTCTCTATTAAACATGAATTTATATGTGTTTGCATAAGAAAATGATTTCCCAGATTTCAGCACCTACTCCTTGACAAAAAGAAGATAAACCTTCGTTCCTTTTTCTTCCTATACCTATTTTGCAGGTTGCATTGGATGAAGCTGCTTTCTTGTTGGATCTAGCTTCCATTGACGGTTCATGGGACGATTGTGCAGAAAGGATTGCTGAATGCTACAAGGAGGCGGGCCTGCATGAAGTTGCAAACTTTGTGGTTTACAGAGACTGAAATACCAGCAACTTTGCTGAATATTAAACGTCTTACACTACTCCCTATGAGTCCTAGTAAGTGGCCTATTCAGTTTTGCCTCCAGCAGAGTGT</genome_strand>
        <mrna_strand>GCACACAAGTAATATCAGGAAAGATAATGAAGTTGGGTGGTGGAGTGGGTTTTGGATGTCCACGCGCCGTCGCATTTCCCGGCATTTTATTCAGCCGCTGCCGACCAACATTCCGATGCTATTCCTCTTCTTCTTCTCCAG....................................................................................................................................................................................................................................................................................................................ACCATGTATCATTTATCAAAGATGTAGCTGCAACTCAAGCACCGGAACATTTGAATGAACTTCTCAAAATCCTTCAGGTGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAATAATTTCTCCTGGTGCCAAGCAAGGGCTGGTTCCTCTAGTGATTCCTCTTTCCAGAAGGAGTTCAG...........................................................................................ATTCTGTAACTGCACTGTTACGATGGCCAACTGCCCCATCTGG.....................................................................................................................................................GATGGAGATGCCGTTGGTAGAAGTGCGCAAGTATGGTGTGTGGCTATTATCTAAGAAT...................................................................................................................................GTAGATCAGTACATTCACAGGGTTTTGGCGGAAGAAGATGCAAACGGTAATCAAGAAAAAGTAGATGAATTATTCCGGATTTCAGCTGGTGCTGGAAAGAAACTTTATGAGAAGGGTGATTTTGGAGCATCAAAAATTTCAAACATAGATACTTATATATTGAAGAAG...................................................................................GTTGGCTTGTTTCCAGATGTACTGGAGCGCAGAATTAAGCAACATTTTGACAATGGAGACAAT..............................................................................ATTTCAGCTTTGGTGACGGGAGAATTTTATACAAAGAAGGAGCATTTTCCAGGATTTGCGCGACCTTTTGTCTTTAATGCTGAAGTTTTGCTGAA.....................................................................................................GGTTGGGCGCAATATAGAAGCTAAAGATGCTGCTAGGGGGGCTTTAAAATCACCATGGTGGACTTTGGGTTGCGAATACCAT......................................................................................GAAGTTGCTAATATGGCTGAATGGGAAGATGAACAAATTGAGTATATCAAAGAGAAAGTAACTGAGGAGGGTAGGGAAGCCGATCTAAAGAAAGGGAAGCAACCTGCTCAG........................................................................................................................................GTTGCATTGGATGAAGCTGCTTTCTTGTTGGATCTAGCTTCCATTGACGGTTCATGGGACGATTGTGCAGAAAGGATTGCTGAATGCTACAAGGAGGCGGGCCTGCATGAAGTTGCAAACTTTGTGGTTTACAGAGACTGAAATACCAGCAACTTTGCTGAATATTAAACGTCTTACACTACTCCCTATGAGTCCTAGTAAGTGGCCTATTCAGTTTTGCCTCCAGCAGAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567570" ref_strand="+" ref_description="SGN-U567570 Tomato 200607#2 [23 ESTs aligned] (*GB) gi|157345156|emb|CAO71884.1| (e_value=5e-86) unnamed; (*ATH) AT5G67150.1 (e_value=3e-75)  Symbol: None | transferase family protein, similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase, Dianthus caryophyllus (gi:2239091); contains Pfam transferase family domain PF002458 | chr5:26812997-26814538 REVERSE | Aliases: K21H1.11, K21H... ; (*SWP) sp|Q9SND9|Y3028_ARATH (e_value=3e-64) Uncharacterized acetyltransferase At3g50280 OS=Arabidopsis thaliana GN=At3g50280; ">
      <seq>gtctcagtttagcttctgcatcaaattttatattatatatatataggtatgtgagccatgactcattaagtataagtgaatttctcctcagtttagcttttgcaacaaatattcaaagatgacaaaacttcgagtagtatcagtatgtgtaattaggtcccaaaaattctcttcaagcaaaaaaatccagttaactccatgggatcttcaactcctcacagtagatcctatccaaaaaggattatttttccgtaaaccaaatcctgagcaacctaaagagttagcaaaatcatcatcagaaattattaatcgcctaaaagtttcactctctgatactctaaatcattttcctcttctcgcgggtcgacttattgctagtaaaaatagtgatggcacctcatctttctttgtagattgcaacaatgaaggagctgagttcaattacgtcactgcacctgatttaactgtggatgatatcttggaacaaacttacgtgccaaagattgtcaagtatttcttcccactcaatggagtatgcaactatgaaggtgtttcaaaaccattgttggctgtgcaagtcacagagctagtggatggattcttcattggttgcactatcaatcattgtgtagcggatgggacttcattttggcatttcttcaattgttggtctgaaatagcgcgcagtggagattccaatcttatcgttaataaaccgccggttctggaccgttggtttcctgaatttgttgctagtccaattcatgtacctttatctaatgaacatgtccatgatgaatttgatctgcctttgttagaagaaagagttttccattttagcaaggagaatatagctcaactcaaagccaaagccaattctgaatatggaaacgaccaaaagatttgtatctcttcattacaagccgttttggctcatatctggcaatctgttatccgttgccgttgtggtacgaacgctaacgaaaaatttagtttcaaattacttataggcgcaaggacaaggctccagccgcatttacctgaaggctattttggaaatgcggtacattttgtaaacgtgacaaccaccgctagggagatgttggagcatgattcaggttgggctgctatgcaaataaataaagtggtatctacgcaaactcatgaagagggtatgaatttttatcaaaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="15815" stop="13799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15516" g_stop="14969" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14968" i_stop="14839" i_length="130">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14838" g_stop="14269" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="1118" r_length="570" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14268" i_stop="14176" i_length="93">
            <donor d_prob="0.797" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14175" g_stop="14099" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1119" r_stop="1195" r_length="77" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-U567570" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1195</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15516" e_stop="14969"/>
          <exon e_start="14838" e_stop="14269"/>
          <exon e_start="14175" e_stop="14099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAGTTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAGGTGAAATTAAATATAATTATGCCAACAACCCTAAAAGTTTTCGTTGTTACATAGATACTACACTTTTTAAGTTTCAACAGGAGCATGCATGACTCTTTTTTAAATTTTAAATTATATTGTGTCTCACCAGGTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCTTCAATTGTTGGTCTGAAATAGCGCGCAGTGGAGATTCCAATCTTATCGTTAATAAACCGCCGGTTCTGGACCGTTGGTTTCCTGAATTTGTTGCTAGTCCAATTCATGTACCTTTATCTAATGAACATGTCCATGATGAATTTGATCTGCCTTTGTTAGAAGAAAGAGTTTTCCATTTTAGCAAGGAGAATATAGCTCAACTCAAAGCCAAAGCCAATTCTGAATATGGAAACGACCAAAAGATTTGTATCTCTTCATTACAAGCCGTTTTGGCTCATATCTGGCAATCTGTTATCCGTTGCCGTTGTGGTACGAACGCTAACGAAAAATTTAGTTTCAAATTACTTATAGGCGCAAGGACAAGGCTCCAGCCGCATTTACCTGAAGGCTATTTTGGAAATGCGGTACATTTTGTAAACGTGACAACCACCGCTAGGGAGATGTTGGAGCATGATTCAGGTTAGTGAGGAATTAAAAGGGCTTAAACAAGTTAAAATTCAGTAAGGAATGAATTAAACTATTTTTTAAGATATACCTTTAAAAAAACTGCAGGTTGGGCTGCTATGCAAATAAATAAGGTGGTATCTACGCAAACTCATGAAGAGGTTATGAATTTTTATCAAAATTGG</genome_strand>
        <mrna_strand>GTCTCAGTTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAG..................................................................................................................................GTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCTTCAATTGTTGGTCTGAAATAGCGCGCAGTGGAGATTCCAATCTTATCGTTAATAAACCGCCGGTTCTGGACCGTTGGTTTCCTGAATTTGTTGCTAGTCCAATTCATGTACCTTTATCTAATGAACATGTCCATGATGAATTTGATCTGCCTTTGTTAGAAGAAAGAGTTTTCCATTTTAGCAAGGAGAATATAGCTCAACTCAAAGCCAAAGCCAATTCTGAATATGGAAACGACCAAAAGATTTGTATCTCTTCATTACAAGCCGTTTTGGCTCATATCTGGCAATCTGTTATCCGTTGCCGTTGTGGTACGAACGCTAACGAAAAATTTAGTTTCAAATTACTTATAGGCGCAAGGACAAGGCTCCAGCCGCATTTACCTGAAGGCTATTTTGGAAATGCGGTACATTTTGTAAACGTGACAACCACCGCTAGGGAGATGTTGGAGCATGATTCAG.............................................................................................GTTGGGCTGCTATGCAAATAAATAAAGTGGTATCTACGCAAACTCATGAAGAGGGTATGAATTTTTATCAAAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573633" ref_strand="+" ref_description="SGN-U573633 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|34393750|dbj|BAC84951.1| (e_value=3e-34) PHCLF2 [Petunia x hybrida]; (*ATH) AT2G23380.1 (e_value=3e-13)  Symbol: None | curly leaf protein (CURLY LEAF) / polycomb-group protein, identical to polycomb group (Arabidopsis thaliana) GI:1903019 (curly leaf); contains Pfam profile PF00856: SET domain | chr2:9962650-9967197 FORWARD | Aliases: F26B6.3, F26B6_3... ; (*SWP) sp|P93831|CLF_ARATH (e_value=3e-12) Polycomb group protein CURLY LEAF OS=Arabidopsis thaliana GN=CLF; ">
      <seq>gtaagccgcagcggtggtgctgcccttatctccgcaccaaacgagaatgtagtagtagaagcatttttaggaaaagaaaataaattctggacaatgccactccgaagaaaaaaaataaaagggatgccttaacaaccaaaaccctaggatttcaacggcggccggaaaataatttcttcttctcttaatcgattcctctcactctctcggggtcgtgtaggactcccatctccttcacgccaattggaatggcgggcacttcttcaattcgcattggtcaacttaccattgatcttccaattggtgcagctgaaggaacaaccatagaagctgatgaattcttatcagtaaccgaatctttgaagcaacaatttgcttctaaacgtgctgattatgtaaagaaaaggacagaagagaatgcacaaaaggcgtatgatttgggggaattgtttttgaagttgtcaacagagagaaaaaatcatacagttcatggtgcagatagtagcattgatcttctgtctaagagacagcaggatgtaattaatatgcaaactgggattggttctagcaatggagataatgatagcaatagttctgaagatgatggatatgcctcttctgaaattcgtctaggatctagcattgccatcaaaagtgctgtatgtcccattatacttcctcaagtggaaagacngcctcaatatactacatgggtatttttgganag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="25570" stop="28726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25870" g_stop="26168" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26169" i_stop="27881" i_length="1713">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27882" g_stop="27983" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="401" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27984" i_stop="28100" i_length="117">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.482" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28101" g_stop="28426" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="727" r_length="326" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-U573633" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25870" e_stop="26168"/>
          <exon e_start="27882" e_stop="27983"/>
          <exon e_start="28101" e_stop="28426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGCCGCAGCGGTGGTGCTGCCCTTATCTCCGCACCAAACGAGAATGTAGTAGTAGAAGCATTTTTAGGAAAAGAAAATAAATTCTGGACAATGCCACTCCGAAGAAAAAAAATAAAAGGGATGCCTTAACAACCAAAACCCTAGGATTTCAACGGCGGCCGGAAAATAATTTCTTCTTCTCTTAATCGATTCCTCTCACTCTCTCGGGGTCGTGTAGGACTCCCATCTCCTTCACGCCAATTGGAATGGCGGGCACTTCTTCAATTCGCATTGGTCAACTTACCATTGATCTTCCAGTAAAGTTCTTATTCCCATTATGTGTTAACTGTTTTTTTTTTCAATTGATTTTAGTTGAATTATGAATAAGATTGTTGATTCTTTGTTTTGATTAATTGGACTGTTCTGAGTTGATTCCAATTGCATTGTAGAATAATCTGGTAGGTCACGCTGCAGTGGTATTATTATCATTGTGCTTGTTAACATAGGAATTTAGTTGAATTATGAATAAGATTGTTGATTCTTTATCTTGATTAATCCGACTGCGTTGTGTTGATTCTAATTGCATTGCTGCTTTGAGTTGATTCTAATTGCATTGCAGGAAGTCACGCTGCAGTGGTAGTAGGATTGTGCTTGTTAACCTAGATTTTAATTGAATTATGAATAAGATTGTTGATTCTTTATCTTGATTAAACCCGACTGCTTTGAGTTGATTCCAATTGCATTGTAGGATAATCTGGTAAGTCACACTGCAGTGGTAGTGGGATTGTGCTTGTTAACCTAGGAATTTAGTTGAATTATGAATAAGATTGTTGATTTTTATCTTGATTAACCCGACTGCTTTGAGTTGATTCCAATTGCATTTCAGGATAATCTGGTAAGTCACGCTGCAGTGGTAGTAGAATTGTGCTTGTTAACCTAGGATTTTCGATGTACTGAATATATCCCTAAAAGAAATTTGGTTTACTCGCATCATTTAGTGCAATTTTCTTCTTGTTCTCTCTCTGGTTGGTCTTTCATTTCCATTTGATATCATGTAGTATGGTGGCCTATCCCATTTGTTGACTGGACTTATTTATACCGGAGTGAATCTTTCCTCCAGGTATATTGTTTAATACTCTTGACCATTGCTTCATAGTTGAAGTCATGAACTTCAACAAAGTGTAAGCTTAAGAGTTCAGACATGATTGGTGAATTGCATAGTTTGTAACTTCACTTCTTGCACTTGGTTAGTGCTGATTCTTTCTTTCTAGTACAATTCATCATCATTATCTAAAAAAGAAAAAAACAAGGTGTAAGCTTCAGAAAATGACGTGCAAAGTGATCACAACTAGAAGTGATCAGGAGATCAGTGATCACAACTAGAAGGGATCAGGAGATTGATTAGTACCAGCATTATTGTAATTTGATTCGATAATTAGTTATTTTAGTAGTCCATATGTGTTTGATACTTATTAATACTTGAATTGTGCGCTTCGCCTAAAAGAAATAGTGCACTTCATTTCTCGATTTTCGCTTCAAGGCCCATGATTTTTTTTTTTTTTTGCTTTTTCGCTTTAGAAAATACTAGCAATTTAGATGTAACCTTCTCAAAAAACAAAAAAACAAAAAACAAAAACCACACCGGCAATTGGGTTGTCACAATGATGGTGTTGCAATAGTTGAGGTGCGCAGGACACCAGCACTAAAAAATGACAGTGTTGGCAGTTTGGTGTGTGTATATTCATACTCTCTTGGTTTTGGGGTTCCATTTTATTACCACGTCTATTGACAATTGATGCCTGGAGCCATATTTCTGTCCCACCAATGTCTTTCTCATAATTATTTTCCTTTTCTCAATTCCTTTCTGCTCACTGCATTGACCTGGTGGCTTGCACTTTTGACTTTGAGGTTTGGAAAACTATTTGTCAATCTTATTCTCCATGTTTGCCATTTTCTTTTTACCTTAGTTATATAGTTATTTTTCCTTCTGTGACTTGTTATGTCATCCAATGCTATACTTCTTTGAACAGATTGGTGCAGCTGAAGGAACAACCATAGAAGCTGATGAATTCTTATCAGTAACCGAATCTTTGAAGCAACAATTTGCTTCTAAACGTGCTGATTATGTAAAGGTGTGTTTTATGAATTGTTAGTTTTCTCCCACTTTTCCCCAATGTTTTATTATGTATTTCGATTGAGGTGCTTTTACAAGGTTTGAACAACCAAGGAACTGTTTTGTCTACTTCCAGAAAAGGACAGAAGAGAATGCACAAAAGGCGTATGATTTGGGGGAATTGTTTTTGAAGTTGTCAACAGAGAGAAAAAATCATACAGTTCATGGTGCAGATAGTAGCATTGATCTTCTGTCTAAGAGACAGCAGGATGTAATTAATATGCAAACTGGGATTGGTTCTAGCAATGGAGATAATGATAGCAATAGTTCTGAAGATGATGGATATGCCTCTTCTGAAATTCGTCTAGGATCTAGCATTGCCATCAAAAGTGCTGTATGTCCCATTATACTTCCTCAAGTGGAAAGACTGCCTCAATATACTACATGGGTATTTTTGGATAG</genome_strand>
        <mrna_strand>GTAAGCCGCAGCGGTGGTGCTGCCCTTATCTCCGCACCAAACGAGAATGTAGTAGTAGAAGCATTTTTAGGAAAAGAAAATAAATTCTGGACAATGCCACTCCGAAGAAAAAAAATAAAAGGGATGCCTTAACAACCAAAACCCTAGGATTTCAACGGCGGCCGGAAAATAATTTCTTCTTCTCTTAATCGATTCCTCTCACTCTCTCGGGGTCGTGTAGGACTCCCATCTCCTTCACGCCAATTGGAATGGCGGGCACTTCTTCAATTCGCATTGGTCAACTTACCATTGATCTTCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTGCAGCTGAAGGAACAACCATAGAAGCTGATGAATTCTTATCAGTAACCGAATCTTTGAAGCAACAATTTGCTTCTAAACGTGCTGATTATGTAAAG.....................................................................................................................AAAAGGACAGAAGAGAATGCACAAAAGGCGTATGATTTGGGGGAATTGTTTTTGAAGTTGTCAACAGAGAGAAAAAATCATACAGTTCATGGTGCAGATAGTAGCATTGATCTTCTGTCTAAGAGACAGCAGGATGTAATTAATATGCAAACTGGGATTGGTTCTAGCAATGGAGATAATGATAGCAATAGTTCTGAAGATGATGGATATGCCTCTTCTGAAATTCGTCTAGGATCTAGCATTGCCATCAAAAGTGCTGTATGTCCCATTATACTTCCTCAAGTGGAAAGACNGCCTCAATATACTACATGGGTATTTTTGGANAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565041" ref_strand="+" ref_description="SGN-U565041 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|157345151|emb|CAO71879.1| (e_value=1e-168) unnamed; (*ATH) AT5G67130.1 (e_value=4e-161) | Symbol: None | expressed protein | chr5:26808592-26811253 FORWARD | Aliases: K21H1.9, K21H1_9; (*SWP) sp|Q93XX5|Y5713_ARATH (e_value=3e-160) PI-PLC X domain-containing protein At5g67130 OS=Arabidopsis thaliana GN=At5g67130; ">
      <seq>gctaattgggctcgcctcaagtaaccaccaatatagggagtaataaagttggtttagcagttggcagacagtgatagagatgcacaaaaattggcatcttctttgtcctctctcataaatctcactatttctatttcttgactttttgccttttgctcttttccttttatacatgcgacaatatttgatttatcaaaagactagtgtttttcatttactatcccatgctgccgtgtttctcggagaagcacagtatgtggagaagacacagcacaggaggaggaggcgctaatggttacttcattttggtactgtgtcacttggctcttcactgcttactcatcactcgctcaactgcttgttctaatgggaattgccagcttcttgattcatgtgcttcggctacggattgtgggccttctttatactgtggtgattgccctgaattgggaaagagtcagcccttttgcatcagaggacaagctatagaacctacttccattatcagtggattgcccttcaacaaatactcgtggttggtcacccataatgccttttcaatggtaaatgcaccattattgacaggccctcagagaattacattctataatcaagaagacactgtcacaaaccaattgagaaatggagtgcggggattgatgctggatatgtacgattttgagaacgatatatggctctgtcactcatttcgtggccaatgttacaacttcactgcctttcaaccggcaattaacactttgaaagaggtggaggcatttttgagcgcaaatcctacagaaatagtcaccatcataattgaggattatgtgcattccccaaagggtttaacaagggtatttgctgatgctgggttggacaagtattggtttcctgtttctaagatgccgagaaaaggtgatgattggcccactgtgaatgatatggttaaaaagaattatcgtctgttggtttttacttctgactcttccaaggaagctgctgaaggaattgcttatcagtggagatacatggttgaaaatgagcctggagaccctggagtggtgcctggctcatgctccagtcgtaaggaatcaaaggcacttaattccagaagtgcttctctgtttctaatgaattactttcccacagttgccgtacaagatggagcctgcaaagagcattcaactcaatttgttgatacgattggtgcctgttacaaagcaccaggcaacatgatgcccaattatgtggcagtaaacttttacatgagaagcgatgggggaggagtttttgatgttttagatcaaatgaacggtcggacactatgtggttgcccgacggtcactgcatgccaggtgggggtacattttggagtttgtaagaatactactgcagcgaatgcagctcctacagcaaccaatactgctggaatgttttcagggtccgtgcaattaacaggccatgcttcaacaatccatttttccactaccttatacctattttcattgtcttctgtaatggtgttgtttctactatgagaagaaaaagagagttccacgcagaagttacatgagtttcatccacggatgctcgatatctactatattaccctgtgtagaattatggagtcggaataggtacagtatacactagaatccacttcggcatgtctgagatgatgaatgttcaacttgacattttcctagtaaaatataacttgtcattttataggagatttggatatagaagtaagcaagggattggagaagagtatcaacatgtaacagatacttttatcacatcccatgtgcattttctagctgccagtttttcccccttggtatgttgacaatgatagtcttattcttcaactgaattttggttaattttttcagtatgaaaaatgttatgttcctcatgttgctacctagagtgttaaaatgcttcagcttttatataataccacaatatatatcatgtgatacttctacagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="48338" stop="53153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48638" g_stop="49017" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49018" i_stop="49212" i_length="195">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49213" g_stop="49335" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="503" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49336" i_stop="49575" i_length="240">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.646" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49576" g_stop="49713" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="641" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49714" i_stop="49831" i_length="118">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49832" g_stop="49930" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="740" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49931" i_stop="50018" i_length="88">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50019" g_stop="50322" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="1044" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50323" i_stop="50403" i_length="81">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50404" g_stop="50627" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1045" r_stop="1268" r_length="224" r_score="0.996"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50628" i_stop="50713" i_length="86">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50714" g_stop="50800" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1269" r_stop="1355" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="50801" i_stop="52213" i_length="1413">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="52214" g_stop="52853" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1356" r_stop="1995" r_length="640" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-U565041" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1995</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48638" e_stop="49017"/>
          <exon e_start="49213" e_stop="49335"/>
          <exon e_start="49576" e_stop="49713"/>
          <exon e_start="49832" e_stop="49930"/>
          <exon e_start="50019" e_stop="50322"/>
          <exon e_start="50404" e_stop="50627"/>
          <exon e_start="50714" e_stop="50800"/>
          <exon e_start="52214" e_stop="52853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAATTGGGCTCGCCTCAAGTAACCACCAATATAGGGAGTAATAAAGTTGGTTTAGCAGTTGGCAGACAGTGATAGAGATGCACAAAAATTGGCATCTTCTTTGTCCTCTCTCATAAATCTCACTATTTCTATTTCTTGACTTTTTGCCTTTTGCTCTTTTCCTTTTATACATGCGACAATATTTGATTTATCAAAAGACTAGTGTTTTTCATTTACTATCCCATGCTGCCGTGTTTCTCGGAGAAGCACAGTATGTGGAGAAGACACAGCACAGGAGGAGGAGGCGCTAATGGTTACTTCATTTTGGTACTGTGTCACTTGGCTCTTCACTGCTTACTCATCACTCGCTCAACTGCTTGTTCTAATGGGAATTGCCAGGTTCCTCTCTCTTTATTGATTTCTTGATATATACATTATGCAACAAAGATTTATTTGGGAAAAAAAACTCATTTTCTTGAATATTTGCGGTCTCTATACGCAATTCTTGTATGAATTCTTGAACCCCATTTGCAGATCCGTGCAATTTTCAATTTTCATTTGTGGGTTTCAGCTGAAATTTCATGAATATTACAGCTTCTTGATTCATGTGCTTCGGCTACGGATTGTGGGCCTTCTTTATACTGTGGTGATTGCCCTGAATTGGGAAAGAGTCAGCCCTTTTGCATCAGAGGACAAGCTATAGAACCTACTTCCATTGTAAGTTTCTTTCTAACTTTCTTTACTCTACTCTGCAGTTTCTGTTTTCTAAGCTGAGGTTTATCAGAAACAACCTTTCTATCTCATAGTGAGGTTGGGTTAGGGTAAGGTTTGCAAACTCTCTATCCTCTTCGAACCTCACTTGTGGTATTACACTGGGTATGTTATTGTTGTCCTTTTTGAGTAGCGATGATGTATGTATAATGCTTTTCTTCTCCTTTTGGACTTGGCAATGAGCAGATCAGTGGATTGCCCTTCAACAAATACTCGTGGTTGGTCACCCATAATGCCTTTTCAATGGTAAATGCACCATTATTGACAGGCCCTCAGAGAATTACATTCTATAATCAAGAAGACACTGTCACAAACCAATTGAGAGTATGTGGTTTCTTATATTTGTGATTTTTCCAACCTTCATCTCTTCTACATTCTGTTCAAAGACACGAGTTCTTATGCTCTTTTATACTAATTCTGTTTATTTTATCTATCTTCTTAGAATGGAGTGCGGGGATTGATGCTGGATATGTACGATTTTGAGAACGATATATGGCTCTGTCACTCATTTCGTGGCCAATGTTACAACTTCACTGCCTTTGTAATGTCATACAATCCCTCTCTTCTTTTGATGTGAGATTGCCTTTGAGTAGCTATTCTGATGTTAATATGTAAAATGTGCTTTCTAGCAACCGGCAATTAACACTTTGAAAGAGGTGGAGGCATTTTTGAGCGCAAATCCTACAGAAATAGTCACCATCATAATTGAGGATTATGTGCATTCCCCAAAGGGTTTAACAAGGGTATTTGCTGATGCTGGGTTGGACAAGTATTGGTTTCCTGTTTCTAAGATGCCGAGAAAAGGTGATGATTGGCCCACTGTGAATGATATGGTTAAAAAGAATTATCGTCTGTTGGTTTTTACTTCTGACTCTTCCAAGGAAGCTGCTGAAGGAATTGCTTATCAGTGGAGATACATGGTTGAAAATGAGCGTAAGTACTAATCGCTCCTTTTTGGTGATTCTGGTTTGTGGATTGATTCTGTAGCAATAATATGTGGTAATGATGTTTCAGCTGGAGACCCTGGAGTGGTGCCTGGCTCATGCTCCAGTCGTAAGGAATCAAAGGCACTTAATTCCAGAAGTGCTTCTCTGTTTCTAATGAATTACTTTCCCACAGTTGCCGTACAAGATGGAGCCTGCAAAGAGCATTCAACTCAATTTGTTGATACGATTGGTGCCTGTTACAAAGCAGCAGGCAACATGATGCCCAATTATGTGGCAGTAAACTTTTACATGGTATTAAAATATTTACTGCTTACTGATGCTGGTGCAGAATTACTAAATATTTTCAACATTGACTGATGAAAAACAAAATCCTGCAGAGAAGTGATGGGGGAGGAGTTTTTGATGTTTTAGATCAAATGAACGGTCGGACACTATGTGGTTGCCCGACGGTCACTGCATGCCAGGTTATTTTTTCTCAAATATCCAATATTTGGATAACTGCTTTAGTTGTAAACATGTGTCTATGTGCCAAAGGTTCACTCTATGAAGAGAGATAGGAGGAAGAACCATGATTGATTCTCTTTAAGTTGAGTCATTATGTAGTCCGTAGGTGACACATTTTTTTTCAATACGGTAGTAGAAAAAGTAACATAAGTCTGTCCAAAAAAGAAAAAGAAGTGAAAGTCCACAATTAGAAATAGCTTTTGAAGAAACCTTGTAGATGAGAAATAGCATGCTGCTTATGATTTATCAGATCACAGGAGCTTGAAACATCGATTGCAACATCTTTTTCTTGACTTCAAACAAATTTGATGTATTATTCACGGTAGAAGTGGTGAGGCTAGCCCGTGATATTTAACATCCTCCTCACATGAATAGTTTAAAAAAAACAACAACTTAGCAATCAGCAGGAGAGTTGACTTGCAGTTTTGCACCATCTTTGCCTACATATGGTCAAAAAGTTCTGATATAGGATGTTCCTTCCTAGTCTCCTTTGTAACCTATGTCTCAAAATAAAAATGTGCAATATGATGACATACCTGGAAGATCTAATCTTAAACATGACTTTGATGAGTGACGTGATCTTTTGATATTAATCTTTGATAAAAATTGGAAGATTTGTGCTGGAAGGACATTGTCATGATTGAACTCACAAAATTCCTTAACATAGCTTCATTAGCTTTTATTATGATAAACTGTTTTCGCCTTTATGGATATTGCAAACATTCTGAGGGATCTATTAAGCTTAAAGAGTTTTGTTGGTCAAACAATTCTTCAGAAATATAGGGTCATCACTGAGATTCTCAGTAGCAGCCTTCAAGAGACAAGAAGTACATATCTCAATATAAAAACTAGCGATATACTTGACAGTTTCTTCTCAGATGACATATCAGACCATTTCTCATTACCATTCTGTTGGTTCCAATTGAAATGTCTCAGCTTGGCTTAACTTTGTTATTAAGAAAAAAGTTGAAATAATGAATTGTTTATGATGTATTGGAGGCATGCATACATGACTACATGAGGCCATAGTTTCACTTTTCCTTTTCAGAATACAGAATCAAGAAAAGCTAGTTTAAGATGACCGAAAATAGGCCCTGTAATATTTTTGAATCATACCATGGTTTAAGTTTGTTTTTCAGGAAAGTTGACACTATATTATAGCAGACCAAAATGTAAAGGTTGACATTCAATTTGGGAAGGAAGGAATCGTTTTCATTTGGGTAATAGACTGTTCTGGAAGATTTACTTGAAGTTGAGGGAAAAGAAACATGGTTGTACTGAAGCTTTTTCTGTGGAGTCAAGGATGCAGCCTCAAAGTTGTTACAAAAATTATCATTTTAGAACTTGTTCTTAAATGGACTTTCTTTTTGCAGGTGGGGGTACATTTTGGAGTTTGTAAGAATACTACTGCAGCGAATGCAGCTCCTACAGCAACCAATACTGCTGGAATGTTTTCAGGGTCCGTGCAATTAACAGGCCATGCTTCAACAATCCATTTTTCCACTACCTTATACCTATTTTCATTGTCTTCTGTAATGGTGTTGTTTCTACTATGAGAAGAAAAAGAGAGTTCCACGCAGAAGTTACATGAGTTTCATCCACGGATGCTCGATATCTACTATATTACCCTGTGTAGAATTATGGAGTCGGAATAGGTACAGTATACACTAGAATCCACTTCGGCATGTCTGAGATGATGAATGTTCAACTTGACATTTTCCTAGTAAAATATAACTTGTCATTTTATAGGAGATTTGGATATAGAAGTAAGCAAGGGATTGGAGAAGAGTATCAACATGTAACAGATACTTTTATCACATCCCATGTGCATTTTCTAGCTGCCAGTTTTTCCCCCTTGGTATGTTGACAATGATAGTCTTATTCTTCAACTGAATTTTGGTTAATTTTTTCAGTATGAAAAATGTTATGTTCCTCATGTTGCTACCTAGAGTGTTAAAATGCTTCAGCTTTTATATAATACCACAATATATATCATGTGATACTTCTACAGTG</genome_strand>
        <mrna_strand>GCTAATTGGGCTCGCCTCAAGTAACCACCAATATAGGGAGTAATAAAGTTGGTTTAGCAGTTGGCAGACAGTGATAGAGATGCACAAAAATTGGCATCTTCTTTGTCCTCTCTCATAAATCTCACTATTTCTATTTCTTGACTTTTTGCCTTTTGCTCTTTTCCTTTTATACATGCGACAATATTTGATTTATCAAAAGACTAGTGTTTTTCATTTACTATCCCATGCTGCCGTGTTTCTCGGAGAAGCACAGTATGTGGAGAAGACACAGCACAGGAGGAGGAGGCGCTAATGGTTACTTCATTTTGGTACTGTGTCACTTGGCTCTTCACTGCTTACTCATCACTCGCTCAACTGCTTGTTCTAATGGGAATTGCCAG...................................................................................................................................................................................................CTTCTTGATTCATGTGCTTCGGCTACGGATTGTGGGCCTTCTTTATACTGTGGTGATTGCCCTGAATTGGGAAAGAGTCAGCCCTTTTGCATCAGAGGACAAGCTATAGAACCTACTTCCATT................................................................................................................................................................................................................................................ATCAGTGGATTGCCCTTCAACAAATACTCGTGGTTGGTCACCCATAATGCCTTTTCAATGGTAAATGCACCATTATTGACAGGCCCTCAGAGAATTACATTCTATAATCAAGAAGACACTGTCACAAACCAATTGAGA......................................................................................................................AATGGAGTGCGGGGATTGATGCTGGATATGTACGATTTTGAGAACGATATATGGCTCTGTCACTCATTTCGTGGCCAATGTTACAACTTCACTGCCTTT........................................................................................CAACCGGCAATTAACACTTTGAAAGAGGTGGAGGCATTTTTGAGCGCAAATCCTACAGAAATAGTCACCATCATAATTGAGGATTATGTGCATTCCCCAAAGGGTTTAACAAGGGTATTTGCTGATGCTGGGTTGGACAAGTATTGGTTTCCTGTTTCTAAGATGCCGAGAAAAGGTGATGATTGGCCCACTGTGAATGATATGGTTAAAAAGAATTATCGTCTGTTGGTTTTTACTTCTGACTCTTCCAAGGAAGCTGCTGAAGGAATTGCTTATCAGTGGAGATACATGGTTGAAAATGAGC.................................................................................CTGGAGACCCTGGAGTGGTGCCTGGCTCATGCTCCAGTCGTAAGGAATCAAAGGCACTTAATTCCAGAAGTGCTTCTCTGTTTCTAATGAATTACTTTCCCACAGTTGCCGTACAAGATGGAGCCTGCAAAGAGCATTCAACTCAATTTGTTGATACGATTGGTGCCTGTTACAAAGCACCAGGCAACATGATGCCCAATTATGTGGCAGTAAACTTTTACATG......................................................................................AGAAGCGATGGGGGAGGAGTTTTTGATGTTTTAGATCAAATGAACGGTCGGACACTATGTGGTTGCCCGACGGTCACTGCATGCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGGTACATTTTGGAGTTTGTAAGAATACTACTGCAGCGAATGCAGCTCCTACAGCAACCAATACTGCTGGAATGTTTTCAGGGTCCGTGCAATTAACAGGCCATGCTTCAACAATCCATTTTTCCACTACCTTATACCTATTTTCATTGTCTTCTGTAATGGTGTTGTTTCTACTATGAGAAGAAAAAGAGAGTTCCACGCAGAAGTTACATGAGTTTCATCCACGGATGCTCGATATCTACTATATTACCCTGTGTAGAATTATGGAGTCGGAATAGGTACAGTATACACTAGAATCCACTTCGGCATGTCTGAGATGATGAATGTTCAACTTGACATTTTCCTAGTAAAATATAACTTGTCATTTTATAGGAGATTTGGATATAGAAGTAAGCAAGGGATTGGAGAAGAGTATCAACATGTAACAGATACTTTTATCACATCCCATGTGCATTTTCTAGCTGCCAGTTTTTCCCCCTTGGTATGTTGACAATGATAGTCTTATTCTTCAACTGAATTTTGGTTAATTTTTTCAGTATGAAAAATGTTATGTTCCTCATGTTGCTACCTAGAGTGTTAAAATGCTTCAGCTTTTATATAATACCACAATATATATCATGTGATACTTCTACAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569490" ref_strand="+" ref_description="SGN-U569490 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|157345150|emb|CAO71878.1| (e_value=1e-88) unnamed; (*ATH) AT5G67140.1 (e_value=1e-86) | Symbol: None | F-box family protein, similar to unknown protein (dbj:BAA78736.1) ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 | chr5:26810672-26812529 REVERSE | Aliases: K21H1.10, K21H1_10; (*SWP) sp|Q9FH99|FB302_ARATH (e_value=1e-85) F-box protein At5g67140 OS=Arabidopsis thaliana GN=At5g67140; ">
      <seq>cgggggnncacattttattttcntcttcttctcttcttcttctctctctcctacttgtacgatttttatgaatagttttcctctgttccacagcttacataaaccacgactcctttccctttttcttcttgttgaaattttcatcaaatttgttgaattttgaagttaattcgtttggttaataatttgattcttccatcatgaaaagaaaggggatggaagaattagatgatcaaaacaggccgattgatagactcccctttgacctcttggctcacatttttgctatgcttacttgtttcaaggatttggctcagacaagtgctgtgtgcaggaaatggagacagggggtgaaggaatcgttagctagaagagaaaaaatgagtttttctggctggaaagtggatgatgattcaacaactcgccttgtgcttcatgcttacagtctcaaggaacttgacatttcgaggagccgttggggttgtcaaataaccgatcgcgggttgtaccaattgtcaactgcaaaatgtgtcagcaatctatcatcactatctttatggggcactactgggatcacagatacaggtgttgttcagctgatctccagagctaattctctacagcatctgaatattggtggtacatttataacagacacgtccttgtttgctattgctggtagctgcccacacttgaagtctattgtgctgtggggctgccgtcatgtaactgaaaatgggcttctagctttagtaaataagtgtcgcaaactagagtctatcaatgcatggggcatgagggttaccgtggactgctttgtcggcctactcactattagcccagctctacaaatagaacctaaaggaatgctgcctaatattgctgtcttctgaggagcctttaagttcctgtgcgtcctttgtctttggaagggcaatccacctgaattgttattgcattatatcttgtgtacagcttgtcaattgtttcattgaccaataatgctttgtatttatttggacattgcctgctgcagggcgtcgaaaagatccgatctgctagtaattattaaaattccatttctcctttgtcagatgatgcatttggaatataaaaatcctaaaaatttatgctagtgttcaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="55768" stop="52574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55476" g_stop="55161" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55160" i_stop="55076" i_length="85">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55075" g_stop="54929" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="463" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54928" i_stop="54148" i_length="781">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54147" g_stop="54012" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="599" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54011" i_stop="53595" i_length="417">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.434" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53594" g_stop="53496" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="698" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53495" i_stop="53322" i_length="174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53321" g_stop="52874" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="1146" r_length="448" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-U569490" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1146</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U569490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55476" e_stop="55161"/>
          <exon e_start="55075" e_stop="54929"/>
          <exon e_start="54147" e_stop="54012"/>
          <exon e_start="53594" e_stop="53496"/>
          <exon e_start="53321" e_stop="52874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGACCACATTTTATTTTCATCTTCTTCTCTTCTTTTTCTCTCTCTCCTACTTGTACGATTTTTATGAATAGTTTTCCTCTGTTCCACAGCTTACATAAACCACGACTCCTTTCCCTTTTTCTTCTTGTTGAAATTTTCATCAAATTTGTTGAATTTTGAAGTTAATTCGTTTGGTTAATAATTTGATTCTTCCATCATGAAAAGAAAGGGGATGGAAGAATTAGATGATCAAAACAGGCCGATTGATAGACTCCCCTTTGACCTCTTGGCTCACATTTTTGCTATGCTTACTTGTTTCAAGGATTTGGCTCAGTTAATTTCAGCTTCTTTTTCTTTTTCCCCTTTTTGTTTAATTTGTTCTTTGTGTTTATTTGTCGTTTTTTGGTACTTGTTGTAGGACAAGTGCTGTGTGCAGGAAATGGAGACAGGGGGTGAAGGAATCGTTAGCTAGAAGAGAAAAAATGAGTTTTTCTGGCTGGAAAGTGGATGATGATTCAACAACTCGCCTTGTGCTTCATGCTTACAGTCTCAAGGAACTTGACATGTATGTATGTCTATATAATTAGTTTTGTACTCTATGCTTGCTACAAGTTAGTTTATTTCGTATACTCTTTTAACTGAAATATAGATGTTTGCAGTACATTTGATGAAACGCTATCTAAAAATGATGGAACTTAAAAGGATTTTGAGGTTGAGAATGCTTATAGTAGTAGTAAACAGAAAATTCGAGCGACTTTCTTGGACTAATTAACTTCAGTAAGACTTTATAGTCATGTTTAGACCATTGATGGTCTTCTTTTCAACTTTTGCAATCAAGAGTAATTAATTGCTCTTTTCATCTATCTTAAGTAAGATGAGCAACACTTCAACTTCTGAAAATCTGGCTAGGTCTAGACTGTGTGGCCGTTAATAGATTCACCACATTGTCTTACCTGTGAGCTGCTCTCTCTTTGATCAGTGATACAATAACCAATAGATCGATGAAGCCATCTAATCGTGCAGAGTTACTAGTATTAAAGAGTATATACATTTTTATTTCTATATGAGATCCTATTTTCTGCAACACTCGATTGATTTATAGCTATTATATTAGTCGTCACATATCAATAAATTGAGTTCCATGCTTTCTTAACCATCCTGAAGTATAATTGGGCGGGGGATATAATCAGATTTACAGGTATTCTAATCTAAAAAGCACCTGCAACCGTTTTGGTTCTTTTTCGTTGTTTCAACTTTAGATGTTTTAGTGTTCAAAAATACAATATAATGATGATTAGGGAGATAACTTGTGTGATGTACTGTTCTGACTTGTTTGCTTTCTCCAGTTCGAGGAGCCGTTGGGGTTGTCAAATAACCGATCGCGGGTTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTATGGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAGCTGGTATGTCGTCCTCATTGTTTATCGTGTCTGTGATCGTGATATTAAGTAGGTCTAGTTAGATGTTATTTTAGAGGTTTATGTCTATCGTTATCATGCTTACTTGAAGATATTTTGATAATGACATTTTGAACTTTCACACCTTTAATTTTGTTGCTTTGCATGCATATGTTTTGATTCCCCGAATAAGGAAGATGTTTGTTAGGAAAAAAGGTTGATGGCTAAGGCGCTGGAGCTATCTTGTTACCTCAATCTGTACTTAACACAATTGCTTTTAGAATTGGAAAGAGAATCATATATTGATTAGAGAAGAGAGATTTCTTCACCTGTTTAAATCTGCCTGTACTTTTCGGTGGAATTAGCTGCTTATGTATAGTTCAAGTAGACTATTGCCTCATTTAGTTTTGGGTTTTCTGATAGATCTCCAGAGCTAATTCTCTACAGCATCTGAATATTGGTGGTACATTTATAACAGACACGTCCTTGTTTGCTATTGCTGGTAGCTGCCCACACTTGAAGGTAAGTCTCCGAAAATTCCACATCTTAAGGTCGCATCACCAATTCACTAGTAGGTTCTAACCTCTTTTTTTAATTTTTATGTTTACTTTCTCCATTGTTATAATAAGATATAACACGAAAGTGTTTGATTCACGGGATTTTTAAGATACGAATACTTGTCCATATCTTTTGCAGTCTATTGTGCTGTGGGGCTGCCGTCATGTAACTGAAAATGGGCTTCTAGCTTTAGTAAATAAGTGTCGCAAACTAGAGTCTATCAATGCATGGGGCATGAGGGTTACCGTGGACTGCTTTGTCGGCCTACTCACTATTAGCCCAGCTCTACAAATAGAACCTAAAGGAATGCTGCCTAATATTGCTGTCTTCTGAGGAGCCTTTAAGTTCCTGTGCGTCCTTTGTCTTTGGAAGGGCAATCCACCTGAATTGTTATTGCATTATATCTTGTGTACAGCTTGTCAATTGTTTCATTGACCAATAATGCTTTGTATTTATTTGGACATTGCCTGCTGCAGGGCGTCGAAAAGATCCGATCTGCTAGTAATTATTAAAATTCCATTTCTCCTTTGTCAGATGATGCATTTGGAATCTAAAAATCCTAAAAATTTATGCTAGTGTTCAATCC</genome_strand>
        <mrna_strand>CGGGGGNNCACATTTTATTTTCNTCTTCTTCTCTTCTTCTTCTCTCTCTCCTACTTGTACGATTTTTATGAATAGTTTTCCTCTGTTCCACAGCTTACATAAACCACGACTCCTTTCCCTTTTTCTTCTTGTTGAAATTTTCATCAAATTTGTTGAATTTTGAAGTTAATTCGTTTGGTTAATAATTTGATTCTTCCATCATGAAAAGAAAGGGGATGGAAGAATTAGATGATCAAAACAGGCCGATTGATAGACTCCCCTTTGACCTCTTGGCTCACATTTTTGCTATGCTTACTTGTTTCAAGGATTTGGCTCA.....................................................................................GACAAGTGCTGTGTGCAGGAAATGGAGACAGGGGGTGAAGGAATCGTTAGCTAGAAGAGAAAAAATGAGTTTTTCTGGCTGGAAAGTGGATGATGATTCAACAACTCGCCTTGTGCTTCATGCTTACAGTCTCAAGGAACTTGACAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAGGAGCCGTTGGGGTTGTCAAATAACCGATCGCGGGTTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTATGGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCAGAGCTAATTCTCTACAGCATCTGAATATTGGTGGTACATTTATAACAGACACGTCCTTGTTTGCTATTGCTGGTAGCTGCCCACACTTGAAG..............................................................................................................................................................................TCTATTGTGCTGTGGGGCTGCCGTCATGTAACTGAAAATGGGCTTCTAGCTTTAGTAAATAAGTGTCGCAAACTAGAGTCTATCAATGCATGGGGCATGAGGGTTACCGTGGACTGCTTTGTCGGCCTACTCACTATTAGCCCAGCTCTACAAATAGAACCTAAAGGAATGCTGCCTAATATTGCTGTCTTCTGAGGAGCCTTTAAGTTCCTGTGCGTCCTTTGTCTTTGGAAGGGCAATCCACCTGAATTGTTATTGCATTATATCTTGTGTACAGCTTGTCAATTGTTTCATTGACCAATAATGCTTTGTATTTATTTGGACATTGCCTGCTGCAGGGCGTCGAAAAGATCCGATCTGCTAGTAATTATTAAAATTCCATTTCTCCTTTGTCAGATGATGCATTTGGAATATAAAAATCCTAAAAATTTATGCTAGTGTTCAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569491" ref_strand="+" ref_description="SGN-U569491 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157345150|emb|CAO71878.1| (e_value=1e-47) unnamed; (*ATH) AT5G67140.1 (e_value=4e-48) | Symbol: None | F-box family protein, similar to unknown protein (dbj:BAA78736.1) ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 | chr5:26810672-26812529 REVERSE | Aliases: K21H1.10, K21H1_10; (*SWP) sp|Q9FH99|FB302_ARATH (e_value=3e-47) F-box protein At5g67140 OS=Arabidopsis thaliana GN=At5g67140; ">
      <seq>ggttgtcaaataacggatcgcgggctgtaccaattgtcaactgcaaaatgtgtcagcaatctatcatcactatctttatggggcactactgggatcacagatacaggtgttgttcagctgcatctgaatattggtggtacatttataacagacacgtccttgtttgctattgctggtagctgcccacacttgaagtctattgtgctgtggggctgccgtcatgtaactgagaatgggcttctagctttagtaaataagtgtcgcaaactagagtctatcaatgcatggggcatgagggttaccgtggactgctttgtcggcctactcactattagcccagctctacaaatagaacctaaaggaatgctgcctaatattgctgtcttctgaggagcctttaagttcctgtgtgacctttgtctttgaagggccatccacctgaattgttattgcattatatcttgtgtacagcttgtcaattgtttcaatgaccaataatgatttgtttttatttggacattgcctgctgcaggcttctgaaaagatctgctagtaattattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="54431" stop="52646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54131" g_stop="54012" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54011" i_stop="53571" i_length="441">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53570" g_stop="53496" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="195" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53495" i_stop="53322" i_length="174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53321" g_stop="52939" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="572" r_length="377" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-U569491" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U569491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54131" e_stop="54012"/>
          <exon e_start="53570" e_stop="53496"/>
          <exon e_start="53321" e_stop="52939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTCAAATAACCGATCGCGGGTTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTATGGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAGCTGGTATGTCGTCCTCATTGTTTATCGTGTCTGTGATCGTGATATTAAGTAGGTCTAGTTAGATGTTATTTTAGAGGTTTATGTCTATCGTTATCATGCTTACTTGAAGATATTTTGATAATGACATTTTGAACTTTCACACCTTTAATTTTGTTGCTTTGCATGCATATGTTTTGATTCCCCGAATAAGGAAGATGTTTGTTAGGAAAAAAGGTTGATGGCTAAGGCGCTGGAGCTATCTTGTTACCTCAATCTGTACTTAACACAATTGCTTTTAGAATTGGAAAGAGAATCATATATTGATTAGAGAAGAGAGATTTCTTCACCTGTTTAAATCTGCCTGTACTTTTCGGTGGAATTAGCTGCTTATGTATAGTTCAAGTAGACTATTGCCTCATTTAGTTTTGGGTTTTCTGATAGATCTCCAGAGCTAATTCTCTACAGCATCTGAATATTGGTGGTACATTTATAACAGACACGTCCTTGTTTGCTATTGCTGGTAGCTGCCCACACTTGAAGGTAAGTCTCCGAAAATTCCACATCTTAAGGTCGCATCACCAATTCACTAGTAGGTTCTAACCTCTTTTTTTAATTTTTATGTTTACTTTCTCCATTGTTATAATAAGATATAACACGAAAGTGTTTGATTCACGGGATTTTTAAGATACGAATACTTGTCCATATCTTTTGCAGTCTATTGTGCTGTGGGGCTGCCGTCATGTAACTGAAAATGGGCTTCTAGCTTTAGTAAATAAGTGTCGCAAACTAGAGTCTATCAATGCATGGGGCATGAGGGTTACCGTGGACTGCTTTGTCGGCCTACTCACTATTAGCCCAGCTCTACAAATAGAACCTAAAGGAATGCTGCCTAATATTGCTGTCTTCTGAGGAGCCTTTAAGTTCCTGTGCGTCCTTTGTCTTTGGAAGGGCAATCCACCTGAATTGTTATTGCATTATATCTTGTGTACAGCTTGTCAATTGTTTCATTGACCAATAATGCTTTGTATTTATTTGGACATTGCCTGCTGCAGGGCGTCGAAAAGATCCGATCTGCTAGTAATTATTAAAATTCCATT</genome_strand>
        <mrna_strand>GGTTGTCAAATAACGGATCGCGGGCTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTATGGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTGAATATTGGTGGTACATTTATAACAGACACGTCCTTGTTTGCTATTGCTGGTAGCTGCCCACACTTGAAG..............................................................................................................................................................................TCTATTGTGCTGTGGGGCTGCCGTCATGTAACTGAGAATGGGCTTCTAGCTTTAGTAAATAAGTGTCGCAAACTAGAGTCTATCAATGCATGGGGCATGAGGGTTACCGTGGACTGCTTTGTCGGCCTACTCACTATTAGCCCAGCTCTACAAATAGAACCTAAAGGAATGCTGCCTAATATTGCTGTCTTCTGAGGAGCCTTTAAGTTCCTGTGTGACCTTTGTCTTT-GAAGGGCCATCCACCTGAATTGTTATTGCATTATATCTTGTGTACAGCTTGTCAATTGTTTCAATGACCAATAATGATTTGTTTTTATTTGGACATTGCCTGCTGCA-GGCTTCTGAAA-A---GATCTGCTAGTAATTATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577382" ref_strand="+" ref_description="SGN-U577382 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|30580349|sp|Q8H9B6|CAMT_SOLTU (e_value=6e-135) Caffeoyl-CoA O-methyltransferase (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT); (*ATH) AT4G34050.1 (e_value=6e-124)  Symbol: None | caffeoyl-CoA 3-O-methyltransferase, putative, nearly identical to GI:2960356 (Populus balsamifera subsp. trichocarpa), GI:684942 (Medicago sativa subsp. sativa) isoform contains a GT-TG intron which removes an internal segment of the ... ; (*SWP) sp|Q8H9B6|CAMT_SOLTU (e_value=4e-136) Caffeoyl-CoA O-methyltransferase OS=Solanum tuberosum GN=CCOAOMT; ">
      <seq>agctcttcaataccaacaagcaatggcaagcaatggagaaaatggtagacaccaagaagttggacacaagagtctcttgcaaagcgatgccctatatcagtacattcttgaaacaagtgtgtacccgagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacctctgctgatgaaggtcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcacaagagattaatcgacttggttaaggttggtggagtaattgggtatgacaatactctatggaacggatcagtggtggcaccacctgatgcaccccttagaaaatacgttaggtattatagggatttcgtattggaactcaacaaggccttggctgctgattccagaattgaaatctgtcagcttcctgttggtgatggtatcactttgtgtcgccgcatcagttaaaatattcaggcattatttttgaaatttcccctatttcgaatttttcattattttacgctttatttttaattctgtcttttctggtaaaaaattgttgtctatgtacctattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="69727" stop="57319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58892" g_stop="58878" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.533"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58877" i_stop="58801" i_length="77">
            <donor d_prob="0.763" d_score="0.00"/>
            <acceptor a_prob="0.901" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58800" g_stop="58717" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="100" r_length="84" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58716" i_stop="58624" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58623" g_stop="58544" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="180" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58543" i_stop="58459" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58458" g_stop="58314" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="325" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58239" g_stop="58108" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="457" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58107" i_stop="58025" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58024" g_stop="57619" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="863" r_length="406" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-U577382" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58892" e_stop="58878"/>
          <exon e_start="58800" e_stop="58717"/>
          <exon e_start="58623" e_stop="58544"/>
          <exon e_start="58458" e_stop="58314"/>
          <exon e_start="58239" e_stop="58108"/>
          <exon e_start="58024" e_stop="57619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTAAAA-AGCAGGTTGCTTACTTTAAACACTTTTTTTATCTATTTCAGAAACAGCAAGATATATAGTTTAAAAATATATCCATAAGCAGTTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAGGTAACCAAATTAAACCCCACATTTTAATTCCTATTGTCATACAAGAAATTAATATGCAAAACCTGTGTTGATCTTAATAAATTGTTTGAACAGTACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTAAAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATCAAGGCATTATTTTTGAAATTTCCCCTATTTCGAATTTTTCATTATTTTACGCTTTATTTTTAATTCTGTCTTTTCTGGTAAAAAATTGTTGTCTATGTACCTATTG</genome_strand>
        <mrna_strand>AGCTCTTCAATACCAA.............................................................................CAAGCAATGGCAAGCAATGGAGAAAATGGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG.............................................................................................TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG.....................................................................................GAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATTCAGGCATTATTTTTGAAATTTCCCCTATTTCGAATTTTTCATTATTTTACGCTTTATTTTTAATTCTGTCTTTTCTGGTAAAAAATTGTTGTCTATGTACCTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577729" ref_strand="+" ref_description="SGN-U577729 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|30580349|sp|Q8H9B6|CAMT_SOLTU (e_value=2e-133) Caffeoyl-CoA O-methyltransferase (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT); (*ATH) AT4G34050.1 (e_value=3e-124)  Symbol: None | caffeoyl-CoA 3-O-methyltransferase, putative, nearly identical to GI:2960356 (Populus balsamifera subsp. trichocarpa), GI:684942 (Medicago sativa subsp. sativa) isoform contains a GT-TG intron which removes an internal segment of the ... ; (*SWP) sp|Q8H9B6|CAMT_SOLTU (e_value=1e-134) Caffeoyl-CoA O-methyltransferase OS=Solanum tuberosum GN=CCOAOMT; ">
      <seq>agtttgcttactttaaacactttttttatctatttcagaaacagcaagatatatagtttaaaaatatatccataagcagttagcaatgatgagcaatggagaaaacagtagacaccaagaagttggacacaagagtctcttgcaaagcgatgccctatatcagtacattcttgaaacaagtgtgtacccgagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacctctgctgatgaaggtcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcacaagagattaatcgacttggttaagattggtggagtaattgggtatgacaacaccctatggaacggatcagtggtggcaccacctgatgcacccctaaggaaatacgttaggtattatagagattttgtattggaactcaacaaggccttggctgctgattccagaattgaaatctgtcagcttcctgttggtgatggtatcactttgtgtcgccgcatcagttaaaatatcaaggcattattttttaaatacccctatttcgaatcttttcattattttatgctttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="59179" stop="57366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58879" g_stop="58717" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58716" i_stop="58624" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58623" g_stop="58544" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="243" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58543" i_stop="58459" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58458" g_stop="58314" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="388" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58239" g_stop="58108" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="520" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58107" i_stop="58025" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58024" g_stop="57666" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="879" r_length="359" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-U577729" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58879" e_stop="58717"/>
          <exon e_start="58623" e_stop="58544"/>
          <exon e_start="58458" e_stop="58314"/>
          <exon e_start="58239" e_stop="58108"/>
          <exon e_start="58024" e_stop="57666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTGCTTACTTTAAACACTTTTTTTATCTATTTCAGAAACAGCAAGATATATAGTTTAAAAATATATCCATAAGCAGTTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAGGTAACCAAATTAAACCCCACATTTTAATTCCTATTGTCATACAAGAAATTAATATGCAAAACCTGTGTTGATCTTAATAAATTGTTTGAACAGTACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTAAAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATCAAGGCATTATTTTTGAAATTTCCCCTATTTCGAAT-TTTTCATTATTTTACGCTTTATTT</genome_strand>
        <mrna_strand>AGTTTGCTTACTTTAAACACTTTTTTTATCTATTTCAGAAACAGCAAGATATATAGTTTAAAAATATATCCATAAGCAGTTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG.............................................................................................TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG.....................................................................................GAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGATTGGTGGAGTAATTGGGTATGACAACACCCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTAAGGAAATACGTTAGGTATTATAGAGATTTTGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATCAAGGCATTATTTTTTAAA-TACCCCTATTTCGAATCTTTTCATTATTTTATGCTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590852" ref_strand="+" ref_description="SGN-U590852 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|30580349|sp|Q8H9B6|CAMT_SOLTU (e_value=9e-133) Caffeoyl-CoA O-methyltransferase (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT); (*ATH) AT4G34050.1 (e_value=3e-123)  Symbol: None | caffeoyl-CoA 3-O-methyltransferase, putative, nearly identical to GI:2960356 (Populus balsamifera subsp. trichocarpa), GI:684942 (Medicago sativa subsp. sativa) isoform contains a GT-TG intron which removes an internal segment of the ... ; (*SWP) sp|Q8H9B6|CAMT_SOLTU (e_value=6e-134) Caffeoyl-CoA O-methyltransferase OS=Solanum tuberosum GN=CCOAOMT; ">
      <seq>cggccggggaggttgcttactttaaacactttttttatctatttcagaaacagcaagatatatagtttaaaaatatatccataagcagttagcaatgatgagcaatggagaaaacagtagacaccaagaagttggacacaagagtctcttgcaaagcgatgccctatatcagtacattcttgaaacaagtgtgtacccgagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggaaccttatgaccacctctgctgatgaaggtcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagagaaggccctgcacttcctgttcttgaccaaatgattgaagacggccaataccatggatcatatgatttcatatttgtggatgctgacaaggacaactatttgaattatcacaagagattaatcgacttggttaaggttggtggagtaattgggtatgacaatactctatggaacggatcagtggtggcaccacctgatgcaccccttagaaaatacgttaggtattatagggatttcgtattggaactcaacaaggccttggctgctgattccagaattgaaatctgtcagcttcctgttggtgatggtatcactttgtgtcgccgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="59181" stop="57438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58888" g_stop="58717" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58716" i_stop="58624" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58623" g_stop="58544" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="252" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58543" i_stop="58459" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58458" g_stop="58314" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="397" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58239" g_stop="58108" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="529" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58107" i_stop="58025" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58024" g_stop="57738" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="816" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-U590852" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58888" e_stop="58717"/>
          <exon e_start="58623" e_stop="58544"/>
          <exon e_start="58458" e_stop="58314"/>
          <exon e_start="58239" e_stop="58108"/>
          <exon e_start="58024" e_stop="57738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAAGCAGGTTGCTTACTTTAAACACTTTTTTTATCTATTTCAGAAACAGCAAGATATATAGTTTAAAAATATATCCATAAGCAGTTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAGGTAACCAAATTAAACCCCACATTTTAATTCCTATTGTCATACAAGAAATTAATATGCAAAACCTGTGTTGATCTTAATAAATTGTTTGAACAGTACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGACGTAAGTACATAAAGTAAAACAACAAATAAATAAATTGATAACTTGTGCACAATGTTTAATGTTGATCTTTCTTTTTACAACAGGGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCAT</genome_strand>
        <mrna_strand>CGGCCGGGGAGGTTGCTTACTTTAAACACTTTTTTTATCTATTTCAGAAACAGCAAGATATATAGTTTAAAAATATATCCATAAGCAGTTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG.............................................................................................TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG.....................................................................................GAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC...................................................................................GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590082" ref_strand="+" ref_description="SGN-U590082 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|30580349|sp|Q8H9B6|CAMT_SOLTU (e_value=2e-61) Caffeoyl-CoA O-methyltransferase (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT); (*ATH) AT4G34050.1 (e_value=5e-57)  Symbol: None | caffeoyl-CoA 3-O-methyltransferase, putative, nearly identical to GI:2960356 (Populus balsamifera subsp. trichocarpa), GI:684942 (Medicago sativa subsp. sativa) isoform contains a GT-TG intron which removes an internal segment of the ... ; (*SWP) sp|Q8H9B6|CAMT_SOLTU (e_value=1e-62) Caffeoyl-CoA O-methyltransferase OS=Solanum tuberosum GN=CCOAOMT; ">
      <seq>ttccaggaaacagcaagatatatagtttaaaaatatatccataagcagttagcaatgatgagcaatggagaaaacagtagacaccaagaagttggacacaagagtctcttgcaaagcgatgccctatatcagtacattcttgaaacaagtgtgtacccgagagagcctgaagccatgaaagagctaagagagattactgcaaaacacccttggtaataactcattttctcactaattacttcatccaattcgatacttattgtatgctgatatcttcattttgtggaaaaaaaacaggaaccttatgaccacctctgctgatgaaggtcaatttttgaatatgcttctcaaactcatcaatgccaaaaacaccatggaaattggggtttttactggttactctctgctggcaactgctatggctcttcctgatgatggcaagattctagcaatggatattaaccgcgataactatgagattggtcttccagtaattgaaaaggctggtctagcgcacaaaattgaattcagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="-" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="59147" stop="57849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58847" g_stop="58717" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58716" i_stop="58624" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58623" g_stop="58314" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="442" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58239" g_stop="58149" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="533" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="-" ref_id="SGN-U590082" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58847" e_stop="58717"/>
          <exon e_start="58623" e_stop="58314"/>
          <exon e_start="58239" e_stop="58149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCA-GAAACAGCAAGATATATAGTTTAAAAATATATCCATAAGCAGTTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAGGTAACCAAATTAAACCCCACATTTTAATTCCTATTGTCATACAAGAAATTAATATGCAAAACCTGTGTTGATCTTAATAAATTGTTTGAACAGTACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAGGTAATTAACTTATACCAATTTCTTACCCATGATAAACTTATAAATTTTGTACTAATCTGCTTAAACTGATTCAGATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAG</genome_strand>
        <mrna_strand>TTCCAGGAAACAGCAAGATATATAGTTTAAAAATATATCCATAAGCAGTTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG.............................................................................................TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG..........................................................................ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567860" ref_strand="+" ref_description="SGN-U567860 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|54306640|gb|AAV33474.1| (e_value=3e-41) basic helix-loop-helix protein [Fragaria x ananassa]; (*ATH) AT4G36930.1 (e_value=4e-41) | Symbol: None | basic helix-loop-helix (bHLH) protein SPATULA (SPT), identical to SPATULA (SPT) GI:11245493 from (Arabidopsis thaliana) | chr4:17414124-17416291 FORWARD | Aliases: AP22.25, AP22_25; (*SWP) sp|Q9FUA4|SPT_ARATH (e_value=3e-40) Transcription factor SPATULA OS=Arabidopsis thaliana GN=SPT; ">
      <seq>tcctagatataaaacagtgtgcacatagacaaaattaacttgatctgctcaacagctggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtttcttcctcatctgttgggaccatagattacgatccggatgagtatgaatgtgaaagtgaggatggtacagaggatttgggggcggaagcttcagttcaaccgccatctcgtaacacttccaagagaagcagagcagctgaagtgcacaatttgtctgaaaagaggagaagaagcaggattaatgagaagatgaaagcattgcaaaaacttattccaaattcaaataagactgacaaggcttcaatgcttgatgaagccattgagtatcttaagcagcttcagctccaagtacagatgttgacaatgagaaacgggttaaacatgtatcctcttggcctgccccgaatgctacaaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="84730" stop="86679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85030" g_stop="85462" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85463" i_stop="85596" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85597" g_stop="85698" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="521" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85699" i_stop="85781" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85782" g_stop="85847" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="587" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85848" i_stop="85971" i_length="124">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85972" g_stop="86037" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="653" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86038" i_stop="86314" i_length="277">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86315" g_stop="86379" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="718" r_length="65" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-U567860" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85030" e_stop="85462"/>
          <exon e_start="85597" e_stop="85698"/>
          <exon e_start="85782" e_stop="85847"/>
          <exon e_start="85972" e_stop="86037"/>
          <exon e_start="86315" e_stop="86379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTACATGTAAAACAGTGTGAACGTAGACAAAATTAACTTGATCTGCTCAACACTGAACTTGATTTTGCTGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAGGTATTTCTACATTTTCTACTTAATTCGTTTTGATTAATTAGTGTATTTAAGTTTTTATTTCCGAATTTGACTTTTTTACTTAATCCTGGTATATATATATATATATATTTTGTGATGATTTTTTTAATATGTAGGATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAGGTTTGTTTATTTTTTTGTTAATTAAGTTCATTATTGTCTGAATCGATGATTCCACGGGTTTAAATCTTGAATATGATTTACAGAGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAGGTGAGGAGTTGCATGTCTAGCAATTTTGAATCGAGTCTTGAAATAAGTAAATAACATAAACTTTTAGCAATATAAAGCTTAAAAGATTTTTGATTTTATTATTTTCTGATGGATTTCTGGACAGACTGACAAGGCTTCAATGCTTGATGAAGCCATTGAGTATCTTAAGCAGCTTCAGCTCCAAGTACAGGTTTGCTGCTTCTGTTTAAATTTGCTGCATGTAATTTGTTTGGTATGATGGGGAGATAAAGATATTTTTTTAGAGGATAATATAATGTAATATTGTGTTGATTGGCCCAACTTTAGTGAAATTTAAAGTTCAGATAGTTGCAAAGAACATGTAGTGTTATTTGACTCAATTCAGTATATTTCCTAGATTGGTTCTAGCTGGTTATCTGTTCATTTAACACTAGTTGATTCGATCAAGTTATATGATTTATAGCATAAGAATGTACTTTGATCTGTAGATGTTGACAATGAGAAACGGGTTAAACATGTATCCTCTTGGCCTGCCACGAATGCTACAACAAAA</genome_strand>
        <mrna_strand>TCCTAGATATAAAACAGTGTGCACATAGACAAAATTAACTTGATCTGCT-----C--AAC---A----GCTGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG......................................................................................................................................GATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAG...................................................................................AGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAG............................................................................................................................ACTGACAAGGCTTCAATGCTTGATGAAGCCATTGAGTATCTTAAGCAGCTTCAGCTCCAAGTACAG.....................................................................................................................................................................................................................................................................................ATGTTGACAATGAGAAACGGGTTAAACATGTATCCTCTTGGCCTGCCCCGAATGCTACAACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600981" ref_strand="-" ref_description="SGN-U600981 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>catcaaaaagtaggtttgtgcgaggggaatgcattcacaaatgccaaagtggctgggaatctacaagttaaccaagacgcctcgttaaatgctattttcaacccaactgaaaattgtacagaaactaaggtaacaccaccgataactatgtcaaatataaaccggtcagacagtgcgtttgagcttgagtcatcgatgaatattcaccttgatccctttcagctctcaagatctaccagcaaggaaatttggagggaggatgacttacctttatatggtatgaatgagctaacgaccaaaactgcatcaactggatcaaatctggcattctcagttcccctagatacggatgcatctaacctgaagagaagcactcgggaggcctgcttgcttcgatatcagtttggtgctgtgaatgaaaccaatctggattgtgaccaacttctttcccaacaactgtatagcaacttctgaattttggcctgcatcgccttgctggattttgttgaagtaatgagacatgcattttgctgcttaggacgtttaatgttgttaacttttgggctcactagccactgtaatgaatgaatggaatataaatgaaaagattggactagtttctatcttgttatgaaatacgaaaattactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0055O24-xJLpn/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0055O24.2" temp_strand="+" temp_description="C02SLm0055O24.2  AC215480.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0055O24 sequenced_by:kribb upload_account_name:korea">
        <position start="86090" stop="87659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86390" g_stop="86632" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86633" i_stop="86743" i_length="111">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86744" g_stop="86813" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="313" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86814" i_stop="86903" i_length="90">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86904" g_stop="87054" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="464" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87055" i_stop="87171" i_length="117">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87172" g_stop="87359" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="652" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0055O24.2" gen_strand="+" ref_id="SGN-U600981" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0055O24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U600981" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86390" e_stop="86632"/>
          <exon e_start="86744" e_stop="86813"/>
          <exon e_start="86904" e_stop="87054"/>
          <exon e_start="87172" e_stop="87359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAAAAGTAGGTTTGTGCGAGGGGAATGCATTCACAAATGCCAAAGTGGCTGGGAATCTACAAGTTAACCAAGACGCCTCGTTAAATGCTATTTTCAACCCAACTGAAAATTGTACAGAAACTAAGGTAACACCACCGATAACTATGTCAAATATAAACCGGTCAGACAGTGCGTTTGAGCTTGAGTCATCGATGAATATTCACCTTGATCCCTTTCAGCTCTCAAGATCTACCAGCAAGGTATGTTGGATACAAAACCTATTGGAATGCCATTTTTTATGAGGATGCAGAATTGCAGATTAAGGAATCAATTTATTTAACCATTTGACATTCACATTCTGTTTTGCGAAGGAAATTTGGAGGGAGGATGACTTACCTTTATATGGTATGAATGAGCTAACGACCAAAACTGCATCAACTGGTAGATTATTTGCTTGATATCCTTGCCTAGTTGACAACTTTTGCCTTGTATCCAGGTCTCTTTACCATTTTATATTTCATTGTATTATAGGATCAAATCTGGCATTCTCAGTTCCCCTAGATACGGATGCATCTAACCTGAAGAGAAGCACTCGGGAGGCCTGCTTGCTTCGATATCAGTTTGGTGCTGTGAATGAAACCAATCTGGATTGTGACCAACTTCTTTCCCAACAACTGTATAGGTAAGTGAACTCACATTATACCCGTGCTCTTACATAGCAATGATTTTTTTTAGTCCTTGTTCTATTGTTAGTCACTTTGGAAGTACTTATGTTGACATTATCTTAAGGTGAATGCAGCAACTTCTGAATTTTGGCCTGCATCGCCTTGCTGGATTTTGTTGAAGTAATGAGACATGCATTTTGCTGCTTAGGACGTTTAATGTTGTTAACTTTTGGGCTCACTAGCCACTGTAATGAATGAATGGAATATAAATGAAAAGATTGGACTAGTTTCTATCTTGTTATGAAATACGAAAATTACTACT</genome_strand>
        <mrna_strand>CATCAAAAAGTAGGTTTGTGCGAGGGGAATGCATTCACAAATGCCAAAGTGGCTGGGAATCTACAAGTTAACCAAGACGCCTCGTTAAATGCTATTTTCAACCCAACTGAAAATTGTACAGAAACTAAGGTAACACCACCGATAACTATGTCAAATATAAACCGGTCAGACAGTGCGTTTGAGCTTGAGTCATCGATGAATATTCACCTTGATCCCTTTCAGCTCTCAAGATCTACCAGCAAG...............................................................................................................GAAATTTGGAGGGAGGATGACTTACCTTTATATGGTATGAATGAGCTAACGACCAAAACTGCATCAACTG..........................................................................................GATCAAATCTGGCATTCTCAGTTCCCCTAGATACGGATGCATCTAACCTGAAGAGAAGCACTCGGGAGGCCTGCTTGCTTCGATATCAGTTTGGTGCTGTGAATGAAACCAATCTGGATTGTGACCAACTTCTTTCCCAACAACTGTATAG.....................................................................................................................CAACTTCTGAATTTTGGCCTGCATCGCCTTGCTGGATTTTGTTGAAGTAATGAGACATGCATTTTGCTGCTTAGGACGTTTAATGTTGTTAACTTTTGGGCTCACTAGCCACTGTAATGAATGAATGGAATATAAATGAAAAGATTGGACTAGTTTCTATCTTGTTATGAAATACGAAAATTACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>12</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6189" PGL_stop="3277"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6189" e_stop="6049"/>
            <exon e_start="5740" e_stop="5657"/>
            <exon e_start="5060" e_stop="4986"/>
            <exon e_start="4894" e_stop="4852"/>
            <exon e_start="4702" e_stop="4645"/>
            <exon e_start="4513" e_stop="4346"/>
            <exon e_start="4262" e_stop="4200"/>
            <exon e_start="4121" e_stop="4027"/>
            <exon e_start="3925" e_stop="3844"/>
            <exon e_start="3757" e_stop="3647"/>
            <exon e_start="3510" e_stop="3277"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.993"/>
          <exon-intron don_prob="0.999" acc_prob="0.632" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.737" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="6189" e_stop="6049" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6048" i_stop="5741" i_length="308"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5740" e_stop="5657" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.632">
            <gDNA_intron_boundary i_start="5656" i_stop="5061" i_length="596"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5060" e_stop="4986" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="4985" i_stop="4895" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4894" e_stop="4852" e_length="43"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="0.995">
            <gDNA_intron_boundary i_start="4851" i_stop="4703" i_length="149"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4702" e_stop="4645" e_length="58"/>
          </exon>
          <intron i_serial="5" don_prob="0.737" acc_prob="0.988">
            <gDNA_intron_boundary i_start="4644" i_stop="4514" i_length="131"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="4513" e_stop="4346" e_length="168"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="4345" i_stop="4263" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="4262" e_stop="4200" e_length="63"/>
          </exon>
          <intron i_serial="7" don_prob="0.982" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4199" i_stop="4122" i_length="78"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4121" e_stop="4027" e_length="95"/>
          </exon>
          <intron i_serial="8" don_prob="0.939" acc_prob="0.975">
            <gDNA_intron_boundary i_start="4026" i_stop="3926" i_length="101"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="3925" e_stop="3844" e_length="82"/>
          </exon>
          <intron i_serial="9" don_prob="0.938" acc_prob="0.999">
            <gDNA_intron_boundary i_start="3843" i_stop="3758" i_length="86"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="3757" e_stop="3647" e_length="111"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="3646" i_stop="3511" i_length="136"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="3510" e_stop="3277" e_length="234"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6189" stop="6049"/>
              <exon start="5740" stop="5657"/>
              <exon start="5060" stop="4986"/>
              <exon start="4894" stop="4852"/>
              <exon start="4702" stop="4645"/>
              <exon start="4513" stop="4346"/>
              <exon start="4262" stop="4200"/>
              <exon start="4121" stop="4027"/>
              <exon start="3925" stop="3844"/>
              <exon start="3757" stop="3647"/>
              <exon start="3510" stop="3277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575599" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACACAAGTAATATCAGGAAAGATAATGAAGTTGGGTGGTGGAGTGGGTTTTGGATGTCCACGCGCCGTCGCATTTCCCGGCATTTTATTCAGCCGCTGCCGACCAACATTCCGATGCTATTCCTCTTCTTCTTCTCCAG : ACCATGTATCATTTATCAAAGATGTAGCTGCAACTCAAGCACCGGAACATTTGAATGAACTTCTCAAAATCCTTCAGGTGAGAG : GTGAAGAAATAATTTCTCCTGGTGCCAAGCAAGGGCTGGTTCCTCTAGTGATTCCTCTTTCCAGAAGGAGTTCAG : ATTCTGTAACTGCACTGTTACGATGGCCAACTGCCCCATCTGG : GATGGAGATGCCGTTGGTAGAAGTGCGCAAGTATGGTGTGTGGCTATTATCTAAGAAT : GTAGATCAGTACATTCACAGGGTTTTGGCGGAAGAAGATGCAAACGGTAATCAAGAAAAAGTAGATGAATTATTCCGGATTTCAGCTGGTGCTGGAAAGAAACTTTATGAGAAGGGTGATTTTGGAGCATCAAAAATTTCAAACATAGATACTTATATATTGAAGAAG : GTTGGCTTGTTTCCAGATGTACTGGAGCGCAGAATTAAGCAACATTTTGACAATGGAGACAAT : ATTTCAGCTTTGGTGACGGGAGAATTTTATACAAAGAAGGAGCATTTTCCAGGATTTGCGCGACCTTTTGTCTTTAATGCTGAAGTTTTGCTGAA : GGTTGGGCGCAATATAGAAGCTAAAGATGCTGCTAGGGGGGCTTTAAAATCACCATGGTGGACTTTGGGTTGCGAATACCAT : GAAGTTGCTAATATGGCTGAATGGGAAGATGAACAAATTGAGTATATCAAAGAGAAAGTAACTGAGGAGGGTAGGGAAGCCGATCTAAAGAAAGGGAAGCAACCTGCTCAG : GTTGCATTGGATGAAGCTGCTTTCTTGTTGGATCTAGCTTCCATTGACGGTTCATGGGACGATTGTGCAGAAAGGATTGCTGAATGCTACAAGGAGGCGGGCCTGCATGAAGTTGCAAACTTTGTGGTTTACAGAGACTGAAATACCAGCAACTTTGCTGAATATTAAACGTCTTACACTACTCCCTATGAGTCCTAGTAAGTGGCCTATTCAGTTTTGCCTCCAGCAGAGTGT</gDNA_template>
            <first_frame> T  H  K  *  Y  Q  E  R  *  *  S  W  V  V  E  W  V  L  D  V  H  A  P  S  H  F  P  A  F  Y  S  A  A  A  D  Q  H  S  D  A  I  P  L  L  L  L  Q  :  T  M  Y  H  L  S  K  M  *  L  Q  L  K  H  R  N  I  *  M  N  F  S  K  S  F  R  *  E  :  V  K  K  *  F  L  L  V  P  S  K  G  W  F  L  *  *  F  L  F  P  E  G  V  Q  :  I  L  *  L  H  C  Y  D  G  Q  L  P  H  L   : G  W  R  C  R  W  *  K  C  A  S  M  V  C  G  Y  Y  L  R  M :   *  I  S  T  F  T  G  F  W  R  K  K  M  Q  T  V  I  K  K  K  *  M  N  Y  S  G  F  Q  L  V  L  E  R  N  F  M  R  R  V  I  L  E  H  Q  K  F  Q  T  *  I  L  I  Y  *  R  R :   L  A  C  F  Q  M  Y  W  S  A  E  L  S  N  I  L  T  M  E  T  I :   F  Q  L  W  *  R  E  N  F  I  Q  R  R  S  I  F  Q  D  L  R  D  L  L  S  L  M  L  K  F  C  *   : R  L  G  A  I  *  K  L  K  M  L  L  G  G  L  *  N  H  H  G  G  L  W  V  A  N  T  M :   K  L  L  I  W  L  N  G  K  M  N  K  L  S  I  S  K  R  K  *  L  R  R  V  G  K  P  I  *  R  K  G  S  N  L  L  R :   L  H  W  M  K  L  L  S  C  W  I  *  L  P  L  T  V  H  G  T  I  V  Q  K  G  L  L  N  A  T  R  R  R  A  C  M  K  L  Q  T  L  W  F  T  E  T  E  I  P  A  T  L  L  N  I  K  R  L  T  L  L  P  M  S  P  S  K  W  P  I  Q  F  C  L  Q  Q  S   </first_frame>
            <second_frame>  H  T  S  N  I  R  K  D  N  E  V  G  W  W  S  G  F  W  M  S  T  R  R  R  I  S  R  H  F  I  Q  P  L  P  T  N  I  P  M  L  F  L  F  F  F  S  R :   P  C  I  I  Y  Q  R  C  S  C  N  S  S  T  G  T  F  E  *  T  S  Q  N  P  S  G  E  R :   *  R  N  N  F  S  W  C  Q  A  R  A  G  S  S  S  D  S  S  F  Q  K  E  F  R :   F  C  N  C  T  V  T  M  A  N  C  P  I  W  :  D  G  D  A  V  G  R  S  A  Q  V  W  C  V  A  I  I  *  E   : C  R  S  V  H  S  Q  G  F  G  G  R  R  C  K  R  *  S  R  K  S  R  *  I  I  P  D  F  S  W  C  W  K  E  T  L  *  E  G  *  F  W  S  I  K  N  F  K  H  R  Y  L  Y  I  E  E   : G  W  L  V  S  R  C  T  G  A  Q  N  *  A  T  F  *  Q  W  R  Q   : Y  F  S  F  G  D  G  R  I  L  Y  K  E  G  A  F  S  R  I  C  A  T  F  C  L  *  C  *  S  F  A  E  :  G  W  A  Q  Y  R  S  *  R  C  C  *  G  G  F  K  I  T  M  V  D  F  G  L  R  I  P   : *  S  C  *  Y  G  *  M  G  R  *  T  N  *  V  Y  Q  R  E  S  N  *  G  G  *  G  S  R  S  K  E  R  E  A  T  C  S   : G  C  I  G  *  S  C  F  L  V  G  S  S  F  H  *  R  F  M  G  R  L  C  R  K  D  C  *  M  L  Q  G  G  G  P  A  *  S  C  K  L  C  G  L  Q  R  L  K  Y  Q  Q  L  C  *  I  L  N  V  L  H  Y  S  L  *  V  L  V  S  G  L  F  S  F  A  S  S  R  V  </second_frame>
            <third_frame>   T  Q  V  I  S  G  K  I  M  K  L  G  G  G  V  G  F  G  C  P  R  A  V  A  F  P  G  I  L  F  S  R  C  R  P  T  F  R  C  Y  S  S  S  S  S  P   : D  H  V  S  F  I  K  D  V  A  A  T  Q  A  P  E  H  L  N  E  L  L  K  I  L  Q  V  R   : G  E  E  I  I  S  P  G  A  K  Q  G  L  V  P  L  V  I  P  L  S  R  R  S  S   : D  S  V  T  A  L  L  R  W  P  T  A  P  S  G :   M  E  M  P  L  V  E  V  R  K  Y  G  V  W  L  L  S  K  N  :  V  D  Q  Y  I  H  R  V  L  A  E  E  D  A  N  G  N  Q  E  K  V  D  E  L  F  R  I  S  A  G  A  G  K  K  L  Y  E  K  G  D  F  G  A  S  K  I  S  N  I  D  T  Y  I  L  K  K  :  V  G  L  F  P  D  V  L  E  R  R  I  K  Q  H  F  D  N  G  D  N  :  I  S  A  L  V  T  G  E  F  Y  T  K  K  E  H  F  P  G  F  A  R  P  F  V  F  N  A  E  V  L  L  K :   V  G  R  N  I  E  A  K  D  A  A  R  G  A  L  K  S  P  W  W  T  L  G  C  E  Y  H  :  E  V  A  N  M  A  E  W  E  D  E  Q  I  E  Y  I  K  E  K  V  T  E  E  G  R  E  A  D  L  K  K  G  K  Q  P  A  Q  :  V  A  L  D  E  A  A  F  L  L  D  L  A  S  I  D  G  S  W  D  D  C  A  E  R  I  A  E  C  Y  K  E  A  G  L  H  E  V  A  N  F  V  V  Y  R  D  *  N  T  S  N  F  A  E  Y  *  T  S  Y  T  T  P  Y  E  S  *  *  V  A  Y  S  V  L  P  P  A  E  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6187" stop="6049"/>
                    <exon start="5740" stop="5657"/>
                    <exon start="5060" stop="4986"/>
                    <exon start="4894" stop="4852"/>
                    <exon start="4702" stop="4645"/>
                    <exon start="4513" stop="4346"/>
                    <exon start="4262" stop="4200"/>
                    <exon start="4121" stop="4027"/>
                    <exon start="3925" stop="3844"/>
                    <exon start="3757" stop="3647"/>
                    <exon start="3510" stop="3370"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQVISGKIMKLGGGVGFGCPRAVAFPGILFSRCRPTFRCYSSSSSPDHVSFIKDVAATQAPEHLNELLKILQVRGEEIISPGAKQGLVPLVIPLSRRSSDSVTALLRWPTAPSGMEMPLVEVRKYGVWLLSKNVDQYIHRVLAEEDANGNQEKVDELFRISAGAGKKLYEKGDFGASKISNIDTYILKKVGLFPDVLERRIKQHFDNGDNISALVTGEFYTKKEHFPGFARPFVFNAEVLLKVGRNIEAKDAARGALKSPWWTLGCEYHEVANMAEWEDEQIEYIKEKVTEEGREADLKKGKQPAQVALDEAAFLLDLASIDGSWDDCAERIAECYKEAGLHEVANFVVYRD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="15516" PGL_stop="14099"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15516" e_stop="14969"/>
            <exon e_start="14838" e_stop="14269"/>
            <exon e_start="14175" e_stop="14099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.994" e_score="0.998"/>
          <exon-intron don_prob="0.797" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="15516" e_stop="14969" e_length="548"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14968" i_stop="14839" i_length="130"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14838" e_stop="14269" e_length="570"/>
          </exon>
          <intron i_serial="2" don_prob="0.797" acc_prob="0.991">
            <gDNA_intron_boundary i_start="14268" i_stop="14176" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="14175" e_stop="14099" e_length="77"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15516" stop="14969"/>
              <exon start="14838" stop="14269"/>
              <exon start="14175" stop="14099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567570" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCAGTTTAGCTTCTGCATCAAATTTTATATTATATATATATAGGTATGTGAGCCATGACTCATTAAGTATAAGTGAATTTCTCCTCAGTTTAGCTTTTGCAACAAATATTCAAAGATGACAAAACTTCGAGTAGTATCAGTATGTGTAATTAGGTCCCAAAAATTCTCTTCAAGCAAAAAAATCCAGTTAACTCCATGGGATCTTCAACTCCTCACAGTAGATCCTATCCAAAAAGGATTATTTTTCCGTAAACCAAATCCTGAGCAACCTAAAGAGTTAGCAAAATCATCATCAGAAATTATTAATCGCCTAAAAGTTTCACTCTCTGATACTCTAAATCATTTTCCTCTTCTCGCGGGTCGACTTATTGCTAGTAAAAATAGTGATGGCACCTCATCTTTCTTTGTAGATTGCAACAATGAAGGAGCTGAGTTCAATTACGTCACTGCACCTGATTTAACTGTGGATGATATCTTGGAACAAACTTACGTGCCAAAGATTGTCAAGTATTTCTTCCCACTCAATGGAGTATGCAACTATGAAG : GTGTTTCAAAACCATTGTTGGCTGTGCAAGTCACAGAGCTAGTGGATGGATTCTTCATTGGTTGCACTATCAATCATTGTGTAGCGGATGGGACTTCATTTTGGCATTTCTTCAATTGTTGGTCTGAAATAGCGCGCAGTGGAGATTCCAATCTTATCGTTAATAAACCGCCGGTTCTGGACCGTTGGTTTCCTGAATTTGTTGCTAGTCCAATTCATGTACCTTTATCTAATGAACATGTCCATGATGAATTTGATCTGCCTTTGTTAGAAGAAAGAGTTTTCCATTTTAGCAAGGAGAATATAGCTCAACTCAAAGCCAAAGCCAATTCTGAATATGGAAACGACCAAAAGATTTGTATCTCTTCATTACAAGCCGTTTTGGCTCATATCTGGCAATCTGTTATCCGTTGCCGTTGTGGTACGAACGCTAACGAAAAATTTAGTTTCAAATTACTTATAGGCGCAAGGACAAGGCTCCAGCCGCATTTACCTGAAGGCTATTTTGGAAATGCGGTACATTTTGTAAACGTGACAACCACCGCTAGGGAGATGTTGGAGCATGATTCAG : GTTGGGCTGCTATGCAAATAAATAAGGTGGTATCTACGCAAACTCATGAAGAGGTTATGAATTTTTATCAAAATTGG</gDNA_template>
            <first_frame> F  S  V  *  L  L  H  Q  I  L  Y  Y  I  Y  I  G  M  *  A  M  T  H  *  V  *  V  N  F  S  S  V  *  L  L  Q  Q  I  F  K  D  D  K  T  S  S  S  I  S  M  C  N  *  V  P  K  I  L  F  K  Q  K  N  P  V  N  S  M  G  S  S  T  P  H  S  R  S  Y  P  K  R  I  I  F  P  *  T  K  S  *  A  T  *  R  V  S  K  I  I  I  R  N  Y  *  S  P  K  S  F  T  L  *  Y  S  K  S  F  S  S  S  R  G  S  T  Y  C  *  *  K  *  *  W  H  L  I  F  L  C  R  L  Q  Q  *  R  S  *  V  Q  L  R  H  C  T  *  F  N  C  G  *  Y  L  G  T  N  L  R  A  K  D  C  Q  V  F  L  P  T  Q  W  S  M  Q  L  *  R :   C  F  K  T  I  V  G  C  A  S  H  R  A  S  G  W  I  L  H  W  L  H  Y  Q  S  L  C  S  G  W  D  F  I  L  A  F  L  Q  L  L  V  *  N  S  A  Q  W  R  F  Q  S  Y  R  *  *  T  A  G  S  G  P  L  V  S  *  I  C  C  *  S  N  S  C  T  F  I  *  *  T  C  P  *  *  I  *  S  A  F  V  R  R  K  S  F  P  F  *  Q  G  E  Y  S  S  T  Q  S  Q  S  Q  F  *  I  W  K  R  P  K  D  L  Y  L  F  I  T  S  R  F  G  S  Y  L  A  I  C  Y  P  L  P  L  W  Y  E  R  *  R  K  I  *  F  Q  I  T  Y  R  R  K  D  K  A  P  A  A  F  T  *  R  L  F  W  K  C  G  T  F  C  K  R  D  N  H  R  *  G  D  V  G  A  *  F  R :   L  G  C  Y  A  N  K  *  G  G  I  Y  A  N  S  *  R  G  Y  E  F  L  S  K  L  </first_frame>
            <second_frame>  S  Q  F  S  F  C  I  K  F  Y  I  I  Y  I  *  V  C  E  P  *  L  I  K  Y  K  *  I  S  P  Q  F  S  F  C  N  K  Y  S  K  M  T  K  L  R  V  V  S  V  C  V  I  R  S  Q  K  F  S  S  S  K  K  I  Q  L  T  P  W  D  L  Q  L  L  T  V  D  P  I  Q  K  G  L  F  F  R  K  P  N  P  E  Q  P  K  E  L  A  K  S  S  S  E  I  I  N  R  L  K  V  S  L  S  D  T  L  N  H  F  P  L  L  A  G  R  L  I  A  S  K  N  S  D  G  T  S  S  F  F  V  D  C  N  N  E  G  A  E  F  N  Y  V  T  A  P  D  L  T  V  D  D  I  L  E  Q  T  Y  V  P  K  I  V  K  Y  F  F  P  L  N  G  V  C  N  Y  E   : G  V  S  K  P  L  L  A  V  Q  V  T  E  L  V  D  G  F  F  I  G  C  T  I  N  H  C  V  A  D  G  T  S  F  W  H  F  F  N  C  W  S  E  I  A  R  S  G  D  S  N  L  I  V  N  K  P  P  V  L  D  R  W  F  P  E  F  V  A  S  P  I  H  V  P  L  S  N  E  H  V  H  D  E  F  D  L  P  L  L  E  E  R  V  F  H  F  S  K  E  N  I  A  Q  L  K  A  K  A  N  S  E  Y  G  N  D  Q  K  I  C  I  S  S  L  Q  A  V  L  A  H  I  W  Q  S  V  I  R  C  R  C  G  T  N  A  N  E  K  F  S  F  K  L  L  I  G  A  R  T  R  L  Q  P  H  L  P  E  G  Y  F  G  N  A  V  H  F  V  N  V  T  T  T  A  R  E  M  L  E  H  D  S   : G  W  A  A  M  Q  I  N  K  V  V  S  T  Q  T  H  E  E  V  M  N  F  Y  Q  N  W </second_frame>
            <third_frame>   L  S  L  A  S  A  S  N  F  I  L  Y  I  Y  R  Y  V  S  H  D  S  L  S  I  S  E  F  L  L  S  L  A  F  A  T  N  I  Q  R  *  Q  N  F  E  *  Y  Q  Y  V  *  L  G  P  K  N  S  L  Q  A  K  K  S  S  *  L  H  G  I  F  N  S  S  Q  *  I  L  S  K  K  D  Y  F  S  V  N  Q  I  L  S  N  L  K  S  *  Q  N  H  H  Q  K  L  L  I  A  *  K  F  H  S  L  I  L  *  I  I  F  L  F  S  R  V  D  L  L  L  V  K  I  V  M  A  P  H  L  S  L  *  I  A  T  M  K  E  L  S  S  I  T  S  L  H  L  I  *  L  W  M  I  S  W  N  K  L  T  C  Q  R  L  S  S  I  S  S  H  S  M  E  Y  A  T  M  K  :  V  F  Q  N  H  C  W  L  C  K  S  Q  S  *  W  M  D  S  S  L  V  A  L  S  I  I  V  *  R  M  G  L  H  F  G  I  S  S  I  V  G  L  K  *  R  A  V  E  I  P  I  L  S  L  I  N  R  R  F  W  T  V  G  F  L  N  L  L  L  V  Q  F  M  Y  L  Y  L  M  N  M  S  M  M  N  L  I  C  L  C  *  K  K  E  F  S  I  L  A  R  R  I  *  L  N  S  K  P  K  P  I  L  N  M  E  T  T  K  R  F  V  S  L  H  Y  K  P  F  W  L  I  S  G  N  L  L  S  V  A  V  V  V  R  T  L  T  K  N  L  V  S  N  Y  L  *  A  Q  G  Q  G  S  S  R  I  Y  L  K  A  I  L  E  M  R  Y  I  L  *  T  *  Q  P  P  L  G  R  C  W  S  M  I  Q  :  V  G  L  L  C  K  *  I  R  W  Y  L  R  K  L  M  K  R  L  *  I  F  I  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15437" stop="14969"/>
                    <exon start="14838" stop="14269"/>
                    <exon start="14175" stop="14099"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1116</number_coding_nucleotides>
                  <number_encoded_amino_acids>372</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISPQFSFCNKYSKMTKLRVVSVCVIRSQKFSSSKKIQLTPWDLQLLTVDPIQKGLFFRKPNPEQPKELAKSSSEIINRLKVSLSDTLNHFPLLAGRLIASKNSDGTSSFFVDCNNEGAEFNYVTAPDLTVDDILEQTYVPKIVKYFFPLNGVCNYEGVSKPLLAVQVTELVDGFFIGCTINHCVADGTSFWHFFNCWSEIARSGDSNLIVNKPPVLDRWFPEFVASPIHVPLSNEHVHDEFDLPLLEERVFHFSKENIAQLKAKANSEYGNDQKICISSLQAVLAHIWQSVIRCRCGTNANEKFSFKLLIGARTRLQPHLPEGYFGNAVHFVNVTTTAREMLEHDSGWAAMQINKVVSTQTHEEVMNFYQNW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="25870" PGL_stop="28426"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25870" e_stop="26168"/>
            <exon e_start="27882" e_stop="27983"/>
            <exon e_start="28101" e_stop="28426"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.482" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25870" e_stop="26168" e_length="299"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26169" i_stop="27881" i_length="1713"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27882" e_stop="27983" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.482">
            <gDNA_intron_boundary i_start="27984" i_stop="28100" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="28101" e_stop="28426" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25870" stop="26168"/>
              <exon start="27882" stop="27983"/>
              <exon start="28101" stop="28426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573633" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAGCCGCAGCGGTGGTGCTGCCCTTATCTCCGCACCAAACGAGAATGTAGTAGTAGAAGCATTTTTAGGAAAAGAAAATAAATTCTGGACAATGCCACTCCGAAGAAAAAAAATAAAAGGGATGCCTTAACAACCAAAACCCTAGGATTTCAACGGCGGCCGGAAAATAATTTCTTCTTCTCTTAATCGATTCCTCTCACTCTCTCGGGGTCGTGTAGGACTCCCATCTCCTTCACGCCAATTGGAATGGCGGGCACTTCTTCAATTCGCATTGGTCAACTTACCATTGATCTTCCA : ATTGGTGCAGCTGAAGGAACAACCATAGAAGCTGATGAATTCTTATCAGTAACCGAATCTTTGAAGCAACAATTTGCTTCTAAACGTGCTGATTATGTAAAG : AAAAGGACAGAAGAGAATGCACAAAAGGCGTATGATTTGGGGGAATTGTTTTTGAAGTTGTCAACAGAGAGAAAAAATCATACAGTTCATGGTGCAGATAGTAGCATTGATCTTCTGTCTAAGAGACAGCAGGATGTAATTAATATGCAAACTGGGATTGGTTCTAGCAATGGAGATAATGATAGCAATAGTTCTGAAGATGATGGATATGCCTCTTCTGAAATTCGTCTAGGATCTAGCATTGCCATCAAAAGTGCTGTATGTCCCATTATACTTCCTCAAGTGGAAAGACTGCCTCAATATACTACATGGGTATTTTTGGATAG</gDNA_template>
            <first_frame> V  S  R  S  G  G  A  A  L  I  S  A  P  N  E  N  V  V  V  E  A  F  L  G  K  E  N  K  F  W  T  M  P  L  R  R  K  K  I  K  G  M  P  *  Q  P  K  P  *  D  F  N  G  G  R  K  I  I  S  S  S  L  N  R  F  L  S  L  S  R  G  R  V  G  L  P  S  P  S  R  Q  L  E  W  R  A  L  L  Q  F  A  L  V  N  L  P  L  I  F  Q :   L  V  Q  L  K  E  Q  P  *  K  L  M  N  S  Y  Q  *  P  N  L  *  S  N  N  L  L  L  N  V  L  I  M  *  R :   K  G  Q  K  R  M  H  K  R  R  M  I  W  G  N  C  F  *  S  C  Q  Q  R  E  K  I  I  Q  F  M  V  Q  I  V  A  L  I  F  C  L  R  D  S  R  M  *  L  I  C  K  L  G  L  V  L  A  M  E  I  M  I  A  I  V  L  K  M  M  D  M  P  L  L  K  F  V  *  D  L  A  L  P  S  K  V  L  Y  V  P  L  Y  F  L  K  W  K  D  C  L  N  I  L  H  G  Y  F  W  I  </first_frame>
            <second_frame>  *  A  A  A  V  V  L  P  L  S  P  H  Q  T  R  M  *  *  *  K  H  F  *  E  K  K  I  N  S  G  Q  C  H  S  E  E  K  K  *  K  G  C  L  N  N  Q  N  P  R  I  S  T  A  A  G  K  *  F  L  L  L  L  I  D  S  S  H  S  L  G  V  V  *  D  S  H  L  L  H  A  N  W  N  G  G  H  F  F  N  S  H  W  S  T  Y  H  *  S  S   : N  W  C  S  *  R  N  N  H  R  S  *  *  I  L  I  S  N  R  I  F  E  A  T  I  C  F  *  T  C  *  L  C  K   : E  K  D  R  R  E  C  T  K  G  V  *  F  G  G  I  V  F  E  V  V  N  R  E  K  K  S  Y  S  S  W  C  R  *  *  H  *  S  S  V  *  E  T  A  G  C  N  *  Y  A  N  W  D  W  F  *  Q  W  R  *  *  *  Q  *  F  *  R  *  W  I  C  L  F  *  N  S  S  R  I  *  H  C  H  Q  K  C  C  M  S  H  Y  T  S  S  S  G  K  T  A  S  I  Y  Y  M  G  I  F  G  * </second_frame>
            <third_frame>   K  P  Q  R  W  C  C  P  Y  L  R  T  K  R  E  C  S  S  R  S  I  F  R  K  R  K  *  I  L  D  N  A  T  P  K  K  K  N  K  R  D  A  L  T  T  K  T  L  G  F  Q  R  R  P  E  N  N  F  F  F  S  *  S  I  P  L  T  L  S  G  S  C  R  T  P  I  S  F  T  P  I  G  M  A  G  T  S  S  I  R  I  G  Q  L  T  I  D  L  P  :  I  G  A  A  E  G  T  T  I  E  A  D  E  F  L  S  V  T  E  S  L  K  Q  Q  F  A  S  K  R  A  D  Y  V  K  :  K  R  T  E  E  N  A  Q  K  A  Y  D  L  G  E  L  F  L  K  L  S  T  E  R  K  N  H  T  V  H  G  A  D  S  S  I  D  L  L  S  K  R  Q  Q  D  V  I  N  M  Q  T  G  I  G  S  S  N  G  D  N  D  S  N  S  S  E  D  D  G  Y  A  S  S  E  I  R  L  G  S  S  I  A  I  K  S  A  V  C  P  I  I  L  P  Q  V  E  R  L  P  Q  Y  T  T  W  V  F  L  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26058" stop="26168"/>
                    <exon start="27882" stop="27983"/>
                    <exon start="28101" stop="28424"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIPLTLSGSCRTPISFTPIGMAGTSSIRIGQLTIDLPIGAAEGTTIEADEFLSVTESLKQQFASKRADYVKKRTEENAQKAYDLGELFLKLSTERKNHTVHGADSSIDLLSKRQQDVINMQTGIGSSNGDNDSNSSEDDGYASSEIRLGSSIAIKSAVCPIILPQVERLPQYTTWVFLD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="48638" PGL_stop="52853"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48638" e_stop="49017"/>
            <exon e_start="49213" e_stop="49335"/>
            <exon e_start="49576" e_stop="49713"/>
            <exon e_start="49832" e_stop="49930"/>
            <exon e_start="50019" e_stop="50322"/>
            <exon e_start="50404" e_stop="50627"/>
            <exon e_start="50714" e_stop="50800"/>
            <exon e_start="52214" e_stop="52853"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.646" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.957" e_score="0.996"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.989"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48638" e_stop="49017" e_length="380"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.871">
            <gDNA_intron_boundary i_start="49018" i_stop="49212" i_length="195"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49213" e_stop="49335" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.646">
            <gDNA_intron_boundary i_start="49336" i_stop="49575" i_length="240"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49576" e_stop="49713" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.864" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49714" i_stop="49831" i_length="118"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49832" e_stop="49930" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.886" acc_prob="0.985">
            <gDNA_intron_boundary i_start="49931" i_stop="50018" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50019" e_stop="50322" e_length="304"/>
          </exon>
          <intron i_serial="5" don_prob="0.947" acc_prob="0.964">
            <gDNA_intron_boundary i_start="50323" i_stop="50403" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="50404" e_stop="50627" e_length="224"/>
          </exon>
          <intron i_serial="6" don_prob="0.945" acc_prob="0.957">
            <gDNA_intron_boundary i_start="50628" i_stop="50713" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="50714" e_stop="50800" e_length="87"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="50801" i_stop="52213" i_length="1413"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="52214" e_stop="52853" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48638" stop="49017"/>
              <exon start="49213" stop="49335"/>
              <exon start="49576" stop="49713"/>
              <exon start="49832" stop="49930"/>
              <exon start="50019" stop="50322"/>
              <exon start="50404" stop="50627"/>
              <exon start="50714" stop="50800"/>
              <exon start="52214" stop="52853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565041" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTAATTGGGCTCGCCTCAAGTAACCACCAATATAGGGAGTAATAAAGTTGGTTTAGCAGTTGGCAGACAGTGATAGAGATGCACAAAAATTGGCATCTTCTTTGTCCTCTCTCATAAATCTCACTATTTCTATTTCTTGACTTTTTGCCTTTTGCTCTTTTCCTTTTATACATGCGACAATATTTGATTTATCAAAAGACTAGTGTTTTTCATTTACTATCCCATGCTGCCGTGTTTCTCGGAGAAGCACAGTATGTGGAGAAGACACAGCACAGGAGGAGGAGGCGCTAATGGTTACTTCATTTTGGTACTGTGTCACTTGGCTCTTCACTGCTTACTCATCACTCGCTCAACTGCTTGTTCTAATGGGAATTGCCAG : CTTCTTGATTCATGTGCTTCGGCTACGGATTGTGGGCCTTCTTTATACTGTGGTGATTGCCCTGAATTGGGAAAGAGTCAGCCCTTTTGCATCAGAGGACAAGCTATAGAACCTACTTCCATT : ATCAGTGGATTGCCCTTCAACAAATACTCGTGGTTGGTCACCCATAATGCCTTTTCAATGGTAAATGCACCATTATTGACAGGCCCTCAGAGAATTACATTCTATAATCAAGAAGACACTGTCACAAACCAATTGAGA : AATGGAGTGCGGGGATTGATGCTGGATATGTACGATTTTGAGAACGATATATGGCTCTGTCACTCATTTCGTGGCCAATGTTACAACTTCACTGCCTTT : CAACCGGCAATTAACACTTTGAAAGAGGTGGAGGCATTTTTGAGCGCAAATCCTACAGAAATAGTCACCATCATAATTGAGGATTATGTGCATTCCCCAAAGGGTTTAACAAGGGTATTTGCTGATGCTGGGTTGGACAAGTATTGGTTTCCTGTTTCTAAGATGCCGAGAAAAGGTGATGATTGGCCCACTGTGAATGATATGGTTAAAAAGAATTATCGTCTGTTGGTTTTTACTTCTGACTCTTCCAAGGAAGCTGCTGAAGGAATTGCTTATCAGTGGAGATACATGGTTGAAAATGAGC : CTGGAGACCCTGGAGTGGTGCCTGGCTCATGCTCCAGTCGTAAGGAATCAAAGGCACTTAATTCCAGAAGTGCTTCTCTGTTTCTAATGAATTACTTTCCCACAGTTGCCGTACAAGATGGAGCCTGCAAAGAGCATTCAACTCAATTTGTTGATACGATTGGTGCCTGTTACAAAGCAGCAGGCAACATGATGCCCAATTATGTGGCAGTAAACTTTTACATG : AGAAGTGATGGGGGAGGAGTTTTTGATGTTTTAGATCAAATGAACGGTCGGACACTATGTGGTTGCCCGACGGTCACTGCATGCCAG : GTGGGGGTACATTTTGGAGTTTGTAAGAATACTACTGCAGCGAATGCAGCTCCTACAGCAACCAATACTGCTGGAATGTTTTCAGGGTCCGTGCAATTAACAGGCCATGCTTCAACAATCCATTTTTCCACTACCTTATACCTATTTTCATTGTCTTCTGTAATGGTGTTGTTTCTACTATGAGAAGAAAAAGAGAGTTCCACGCAGAAGTTACATGAGTTTCATCCACGGATGCTCGATATCTACTATATTACCCTGTGTAGAATTATGGAGTCGGAATAGGTACAGTATACACTAGAATCCACTTCGGCATGTCTGAGATGATGAATGTTCAACTTGACATTTTCCTAGTAAAATATAACTTGTCATTTTATAGGAGATTTGGATATAGAAGTAAGCAAGGGATTGGAGAAGAGTATCAACATGTAACAGATACTTTTATCACATCCCATGTGCATTTTCTAGCTGCCAGTTTTTCCCCCTTGGTATGTTGACAATGATAGTCTTATTCTTCAACTGAATTTTGGTTAATTTTTTCAGTATGAAAAATGTTATGTTCCTCATGTTGCTACCTAGAGTGTTAAAATGCTTCAGCTTTTATATAATACCACAATATATATCATGTGATACTTCTACAGTG</gDNA_template>
            <first_frame> A  N  W  A  R  L  K  *  P  P  I  *  G  V  I  K  L  V  *  Q  L  A  D  S  D  R  D  A  Q  K  L  A  S  S  L  S  S  L  I  N  L  T  I  S  I  S  *  L  F  A  F  C  S  F  P  F  I  H  A  T  I  F  D  L  S  K  D  *  C  F  S  F  T  I  P  C  C  R  V  S  R  R  S  T  V  C  G  E  D  T  A  Q  E  E  E  A  L  M  V  T  S  F  W  Y  C  V  T  W  L  F  T  A  Y  S  S  L  A  Q  L  L  V  L  M  G  I  A  S :   F  L  I  H  V  L  R  L  R  I  V  G  L  L  Y  T  V  V  I  A  L  N  W  E  R  V  S  P  F  A  S  E  D  K  L  *  N  L  L  P  L :   S  V  D  C  P  S  T  N  T  R  G  W  S  P  I  M  P  F  Q  W  *  M  H  H  Y  *  Q  A  L  R  E  L  H  S  I  I  K  K  T  L  S  Q  T  N  *  E :   M  E  C  G  D  *  C  W  I  C  T  I  L  R  T  I  Y  G  S  V  T  H  F  V  A  N  V  T  T  S  L  P  F :   N  R  Q  L  T  L  *  K  R  W  R  H  F  *  A  Q  I  L  Q  K  *  S  P  S  *  L  R  I  M  C  I  P  Q  R  V  *  Q  G  Y  L  L  M  L  G  W  T  S  I  G  F  L  F  L  R  C  R  E  K  V  M  I  G  P  L  *  M  I  W  L  K  R  I  I  V  C  W  F  L  L  L  T  L  P  R  K  L  L  K  E  L  L  I  S  G  D  T  W  L  K  M  S  :  L  E  T  L  E  W  C  L  A  H  A  P  V  V  R  N  Q  R  H  L  I  P  E  V  L  L  C  F  *  *  I  T  F  P  Q  L  P  Y  K  M  E  P  A  K  S  I  Q  L  N  L  L  I  R  L  V  P  V  T  K  Q  Q  A  T  *  C  P  I  M  W  Q  *  T  F  T  * :   E  V  M  G  E  E  F  L  M  F  *  I  K  *  T  V  G  H  Y  V  V  A  R  R  S  L  H  A  R :   W  G  Y  I  L  E  F  V  R  I  L  L  Q  R  M  Q  L  L  Q  Q  P  I  L  L  E  C  F  Q  G  P  C  N  *  Q  A  M  L  Q  Q  S  I  F  P  L  P  Y  T  Y  F  H  C  L  L  *  W  C  C  F  Y  Y  E  K  K  K  R  V  P  R  R  S  Y  M  S  F  I  H  G  C  S  I  S  T  I  L  P  C  V  E  L  W  S  R  N  R  Y  S  I  H  *  N  P  L  R  H  V  *  D  D  E  C  S  T  *  H  F  P  S  K  I  *  L  V  I  L  *  E  I  W  I  *  K  *  A  R  D  W  R  R  V  S  T  C  N  R  Y  F  Y  H  I  P  C  A  F  S  S  C  Q  F  F  P  L  G  M  L  T  M  I  V  L  F  F  N  *  I  L  V  N  F  F  S  M  K  N  V  M  F  L  M  L  L  P  R  V  L  K  C  F  S  F  Y  I  I  P  Q  Y  I  S  C  D  T  S  T  V </first_frame>
            <second_frame>  L  I  G  L  A  S  S  N  H  Q  Y  R  E  *  *  S  W  F  S  S  W  Q  T  V  I  E  M  H  K  N  W  H  L  L  C  P  L  S  *  I  S  L  F  L  F  L  D  F  L  P  F  A  L  F  L  L  Y  M  R  Q  Y  L  I  Y  Q  K  T  S  V  F  H  L  L  S  H  A  A  V  F  L  G  E  A  Q  Y  V  E  K  T  Q  H  R  R  R  R  R  *  W  L  L  H  F  G  T  V  S  L  G  S  S  L  L  T  H  H  S  L  N  C  L  F  *  W  E  L  P   : A  S  *  F  M  C  F  G  Y  G  L  W  A  F  F  I  L  W  *  L  P  *  I  G  K  E  S  A  L  L  H  Q  R  T  S  Y  R  T  Y  F  H   : Y  Q  W  I  A  L  Q  Q  I  L  V  V  G  H  P  *  C  L  F  N  G  K  C  T  I  I  D  R  P  S  E  N  Y  I  L  *  S  R  R  H  C  H  K  P  I  E   : K  W  S  A  G  I  D  A  G  Y  V  R  F  *  E  R  Y  M  A  L  S  L  I  S  W  P  M  L  Q  L  H  C  L   : S  T  G  N  *  H  F  E  R  G  G  G  I  F  E  R  K  S  Y  R  N  S  H  H  H  N  *  G  L  C  A  F  P  K  G  F  N  K  G  I  C  *  C  W  V  G  Q  V  L  V  S  C  F  *  D  A  E  K  R  *  *  L  A  H  C  E  *  Y  G  *  K  E  L  S  S  V  G  F  Y  F  *  L  F  Q  G  S  C  *  R  N  C  L  S  V  E  I  H  G  *  K  *  A :   W  R  P  W  S  G  A  W  L  M  L  Q  S  *  G  I  K  G  T  *  F  Q  K  C  F  S  V  S  N  E  L  L  S  H  S  C  R  T  R  W  S  L  Q  R  A  F  N  S  I  C  *  Y  D  W  C  L  L  Q  S  S  R  Q  H  D  A  Q  L  C  G  S  K  L  L  H   : E  K  *  W  G  R  S  F  *  C  F  R  S  N  E  R  S  D  T  M  W  L  P  D  G  H  C  M  P   : G  G  G  T  F  W  S  L  *  E  Y  Y  C  S  E  C  S  S  Y  S  N  Q  Y  C  W  N  V  F  R  V  R  A  I  N  R  P  C  F  N  N  P  F  F  H  Y  L  I  P  I  F  I  V  F  C  N  G  V  V  S  T  M  R  R  K  R  E  F  H  A  E  V  T  *  V  S  S  T  D  A  R  Y  L  L  Y  Y  P  V  *  N  Y  G  V  G  I  G  T  V  Y  T  R  I  H  F  G  M  S  E  M  M  N  V  Q  L  D  I  F  L  V  K  Y  N  L  S  F  Y  R  R  F  G  Y  R  S  K  Q  G  I  G  E  E  Y  Q  H  V  T  D  T  F  I  T  S  H  V  H  F  L  A  A  S  F  S  P  L  V  C  *  Q  *  *  S  Y  S  S  T  E  F  W  L  I  F  S  V  *  K  M  L  C  S  S  C  C  Y  L  E  C  *  N  A  S  A  F  I  *  Y  H  N  I  Y  H  V  I  L  L  Q   </second_frame>
            <third_frame>   *  L  G  S  P  Q  V  T  T  N  I  G  S  N  K  V  G  L  A  V  G  R  Q  *  *  R  C  T  K  I  G  I  F  F  V  L  S  H  K  S  H  Y  F  Y  F  L  T  F  C  L  L  L  F  S  F  Y  T  C  D  N  I  *  F  I  K  R  L  V  F  F  I  Y  Y  P  M  L  P  C  F  S  E  K  H  S  M  W  R  R  H  S  T  G  G  G  G  A  N  G  Y  F  I  L  V  L  C  H  L  A  L  H  C  L  L  I  T  R  S  T  A  C  S  N  G  N  C  Q  :  L  L  D  S  C  A  S  A  T  D  C  G  P  S  L  Y  C  G  D  C  P  E  L  G  K  S  Q  P  F  C  I  R  G  Q  A  I  E  P  T  S  I  :  I  S  G  L  P  F  N  K  Y  S  W  L  V  T  H  N  A  F  S  M  V  N  A  P  L  L  T  G  P  Q  R  I  T  F  Y  N  Q  E  D  T  V  T  N  Q  L  R  :  N  G  V  R  G  L  M  L  D  M  Y  D  F  E  N  D  I  W  L  C  H  S  F  R  G  Q  C  Y  N  F  T  A  F  :  Q  P  A  I  N  T  L  K  E  V  E  A  F  L  S  A  N  P  T  E  I  V  T  I  I  I  E  D  Y  V  H  S  P  K  G  L  T  R  V  F  A  D  A  G  L  D  K  Y  W  F  P  V  S  K  M  P  R  K  G  D  D  W  P  T  V  N  D  M  V  K  K  N  Y  R  L  L  V  F  T  S  D  S  S  K  E  A  A  E  G  I  A  Y  Q  W  R  Y  M  V  E  N  E   : P  G  D  P  G  V  V  P  G  S  C  S  S  R  K  E  S  K  A  L  N  S  R  S  A  S  L  F  L  M  N  Y  F  P  T  V  A  V  Q  D  G  A  C  K  E  H  S  T  Q  F  V  D  T  I  G  A  C  Y  K  A  A  G  N  M  M  P  N  Y  V  A  V  N  F  Y  M  :  R  S  D  G  G  G  V  F  D  V  L  D  Q  M  N  G  R  T  L  C  G  C  P  T  V  T  A  C  Q  :  V  G  V  H  F  G  V  C  K  N  T  T  A  A  N  A  A  P  T  A  T  N  T  A  G  M  F  S  G  S  V  Q  L  T  G  H  A  S  T  I  H  F  S  T  T  L  Y  L  F  S  L  S  S  V  M  V  L  F  L  L  *  E  E  K  E  S  S  T  Q  K  L  H  E  F  H  P  R  M  L  D  I  Y  Y  I  T  L  C  R  I  M  E  S  E  *  V  Q  Y  T  L  E  S  T  S  A  C  L  R  *  *  M  F  N  L  T  F  S  *  *  N  I  T  C  H  F  I  G  D  L  D  I  E  V  S  K  G  L  E  K  S  I  N  M  *  Q  I  L  L  S  H  P  M  C  I  F  *  L  P  V  F  P  P  W  Y  V  D  N  D  S  L  I  L  Q  L  N  F  G  *  F  F  Q  Y  E  K  C  Y  V  P  H  V  A  T  *  S  V  K  M  L  Q  L  L  Y  N  T  T  I  Y  I  M  *  Y  F  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48826" stop="49017"/>
                    <exon start="49213" stop="49335"/>
                    <exon start="49576" stop="49713"/>
                    <exon start="49832" stop="49930"/>
                    <exon start="50019" stop="50322"/>
                    <exon start="50404" stop="50627"/>
                    <exon start="50714" stop="50800"/>
                    <exon start="52214" stop="52396"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1347</number_coding_nucleotides>
                  <number_encoded_amino_acids>449</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIKRLVFFIYYPMLPCFSEKHSMWRRHSTGGGGANGYFILVLCHLALHCLLITRSTACSNGNCQLLDSCASATDCGPSLYCGDCPELGKSQPFCIRGQAIEPTSIISGLPFNKYSWLVTHNAFSMVNAPLLTGPQRITFYNQEDTVTNQLRNGVRGLMLDMYDFENDIWLCHSFRGQCYNFTAFQPAINTLKEVEAFLSANPTEIVTIIIEDYVHSPKGLTRVFADAGLDKYWFPVSKMPRKGDDWPTVNDMVKKNYRLLVFTSDSSKEAAEGIAYQWRYMVENEPGDPGVVPGSCSSRKESKALNSRSASLFLMNYFPTVAVQDGACKEHSTQFVDTIGACYKAAGNMMPNYVAVNFYMRSDGGGVFDVLDQMNGRTLCGCPTVTACQVGVHFGVCKNTTAANAAPTATNTAGMFSGSVQLTGHASTIHFSTTLYLFSLSSVMVLFLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52477" stop="52707"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYGVGIGTVYTRIHFGMSEMMNVQLDIFLVKYNLSFYRRFGYRSKQGIGEEYQHVTDTFITSHVHFLAASFSPLVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="55476" PGL_stop="52874"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55476" e_stop="55161"/>
            <exon e_start="55075" e_stop="54929"/>
            <exon e_start="54147" e_stop="54012"/>
            <exon e_start="53594" e_stop="53496"/>
            <exon e_start="53321" e_stop="52874"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.751" acc_prob="1.000" e_score="0.975"/>
          <exon-intron don_prob="0.966" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.434" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="55476" e_stop="55161" e_length="316"/>
          </exon>
          <intron i_serial="1" don_prob="0.751" acc_prob="1.000">
            <gDNA_intron_boundary i_start="55160" i_stop="55076" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55075" e_stop="54929" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.995">
            <gDNA_intron_boundary i_start="54928" i_stop="54148" i_length="781"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54147" e_stop="54012" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.434">
            <gDNA_intron_boundary i_start="54011" i_stop="53595" i_length="417"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53594" e_stop="53496" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="53495" i_stop="53322" i_length="174"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="53321" e_stop="52874" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55476" stop="55161"/>
              <exon start="55075" stop="54929"/>
              <exon start="54147" stop="54012"/>
              <exon start="53594" stop="53496"/>
              <exon start="53321" stop="52874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569490" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGATGACCACATTTTATTTTCATCTTCTTCTCTTCTTTTTCTCTCTCTCCTACTTGTACGATTTTTATGAATAGTTTTCCTCTGTTCCACAGCTTACATAAACCACGACTCCTTTCCCTTTTTCTTCTTGTTGAAATTTTCATCAAATTTGTTGAATTTTGAAGTTAATTCGTTTGGTTAATAATTTGATTCTTCCATCATGAAAAGAAAGGGGATGGAAGAATTAGATGATCAAAACAGGCCGATTGATAGACTCCCCTTTGACCTCTTGGCTCACATTTTTGCTATGCTTACTTGTTTCAAGGATTTGGCTCA : GACAAGTGCTGTGTGCAGGAAATGGAGACAGGGGGTGAAGGAATCGTTAGCTAGAAGAGAAAAAATGAGTTTTTCTGGCTGGAAAGTGGATGATGATTCAACAACTCGCCTTGTGCTTCATGCTTACAGTCTCAAGGAACTTGACAT : TTCGAGGAGCCGTTGGGGTTGTCAAATAACCGATCGCGGGTTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTATGGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAGCTG : ATCTCCAGAGCTAATTCTCTACAGCATCTGAATATTGGTGGTACATTTATAACAGACACGTCCTTGTTTGCTATTGCTGGTAGCTGCCCACACTTGAAG : TCTATTGTGCTGTGGGGCTGCCGTCATGTAACTGAAAATGGGCTTCTAGCTTTAGTAAATAAGTGTCGCAAACTAGAGTCTATCAATGCATGGGGCATGAGGGTTACCGTGGACTGCTTTGTCGGCCTACTCACTATTAGCCCAGCTCTACAAATAGAACCTAAAGGAATGCTGCCTAATATTGCTGTCTTCTGAGGAGCCTTTAAGTTCCTGTGCGTCCTTTGTCTTTGGAAGGGCAATCCACCTGAATTGTTATTGCATTATATCTTGTGTACAGCTTGTCAATTGTTTCATTGACCAATAATGCTTTGTATTTATTTGGACATTGCCTGCTGCAGGGCGTCGAAAAGATCCGATCTGCTAGTAATTATTAAAATTCCATTTCTCCTTTGTCAGATGATGCATTTGGAATCTAAAAATCCTAAAAATTTATGCTAGTGTTCAATCC</gDNA_template>
            <first_frame> K  M  T  T  F  Y  F  H  L  L  L  F  F  F  S  L  S  Y  L  Y  D  F  Y  E  *  F  S  S  V  P  Q  L  T  *  T  T  T  P  F  P  F  S  S  C  *  N  F  H  Q  I  C  *  I  L  K  L  I  R  L  V  N  N  L  I  L  P  S  *  K  E  R  G  W  K  N  *  M  I  K  T  G  R  L  I  D  S  P  L  T  S  W  L  T  F  L  L  C  L  L  V  S  R  I  W  L   : R  Q  V  L  C  A  G  N  G  D  R  G  *  R  N  R  *  L  E  E  K  K  *  V  F  L  A  G  K  W  M  M  I  Q  Q  L  A  L  C  F  M  L  T  V  S  R  N  L  T   : F  R  G  A  V  G  V  V  K  *  P  I  A  G  C  T  N  C  Q  L  Q  N  V  S  A  I  Y  H  H  Y  L  Y  G  A  L  L  G  S  Q  I  Q  V  L  F  S  * :   S  P  E  L  I  L  Y  S  I  *  I  L  V  V  H  L  *  Q  T  R  P  C  L  L  L  L  V  A  A  H  T  *  S :   L  L  C  C  G  A  A  V  M  *  L  K  M  G  F  *  L  *  *  I  S  V  A  N  *  S  L  S  M  H  G  A  *  G  L  P  W  T  A  L  S  A  Y  S  L  L  A  Q  L  Y  K  *  N  L  K  E  C  C  L  I  L  L  S  S  E  E  P  L  S  S  C  A  S  F  V  F  G  R  A  I  H  L  N  C  Y  C  I  I  S  C  V  Q  L  V  N  C  F  I  D  Q  *  C  F  V  F  I  W  T  L  P  A  A  G  R  R  K  D  P  I  C  *  *  L  L  K  F  H  F  S  F  V  R  *  C  I  W  N  L  K  I  L  K  I  Y  A  S  V  Q  S </first_frame>
            <second_frame>  R  *  P  H  F  I  F  I  F  F  S  S  F  S  L  S  P  T  C  T  I  F  M  N  S  F  P  L  F  H  S  L  H  K  P  R  L  L  S  L  F  L  L  V  E  I  F  I  K  F  V  E  F  *  S  *  F  V  W  L  I  I  *  F  F  H  H  E  K  K  G  D  G  R  I  R  *  S  K  Q  A  D  *  *  T  P  L  *  P  L  G  S  H  F  C  Y  A  Y  L  F  Q  G  F  G  S  :  D  K  C  C  V  Q  E  M  E  T  G  G  E  G  I  V  S  *  K  R  K  N  E  F  F  W  L  E  S  G  *  *  F  N  N  S  P  C  A  S  C  L  Q  S  Q  G  T  *  H  :  F  E  E  P  L  G  L  S  N  N  R  S  R  V  V  P  I  V  N  C  K  M  C  Q  Q  S  I  I  T  I  F  M  G  H  Y  W  D  H  R  Y  R  C  C  S  A   : D  L  Q  S  *  F  S  T  A  S  E  Y  W  W  Y  I  Y  N  R  H  V  L  V  C  Y  C  W  *  L  P  T  L  E   : V  Y  C  A  V  G  L  P  S  C  N  *  K  W  A  S  S  F  S  K  *  V  S  Q  T  R  V  Y  Q  C  M  G  H  E  G  Y  R  G  L  L  C  R  P  T  H  Y  *  P  S  S  T  N  R  T  *  R  N  A  A  *  Y  C  C  L  L  R  S  L  *  V  P  V  R  P  L  S  L  E  G  Q  S  T  *  I  V  I  A  L  Y  L  V  Y  S  L  S  I  V  S  L  T  N  N  A  L  Y  L  F  G  H  C  L  L  Q  G  V  E  K  I  R  S  A  S  N  Y  *  N  S  I  S  P  L  S  D  D  A  F  G  I  *  K  S  *  K  F  M  L  V  F  N   </second_frame>
            <third_frame>   D  D  H  I  L  F  S  S  S  S  L  L  F  L  S  L  L  L  V  R  F  L  *  I  V  F  L  C  S  T  A  Y  I  N  H  D  S  F  P  F  F  F  L  L  K  F  S  S  N  L  L  N  F  E  V  N  S  F  G  *  *  F  D  S  S  I  M  K  R  K  G  M  E  E  L  D  D  Q  N  R  P  I  D  R  L  P  F  D  L  L  A  H  I  F  A  M  L  T  C  F  K  D  L  A  Q :   T  S  A  V  C  R  K  W  R  Q  G  V  K  E  S  L  A  R  R  E  K  M  S  F  S  G  W  K  V  D  D  D  S  T  T  R  L  V  L  H  A  Y  S  L  K  E  L  D  I :   S  R  S  R  W  G  C  Q  I  T  D  R  G  L  Y  Q  L  S  T  A  K  C  V  S  N  L  S  S  L  S  L  W  G  T  T  G  I  T  D  T  G  V  V  Q  L  :  I  S  R  A  N  S  L  Q  H  L  N  I  G  G  T  F  I  T  D  T  S  L  F  A  I  A  G  S  C  P  H  L  K  :  S  I  V  L  W  G  C  R  H  V  T  E  N  G  L  L  A  L  V  N  K  C  R  K  L  E  S  I  N  A  W  G  M  R  V  T  V  D  C  F  V  G  L  L  T  I  S  P  A  L  Q  I  E  P  K  G  M  L  P  N  I  A  V  F  *  G  A  F  K  F  L  C  V  L  C  L  W  K  G  N  P  P  E  L  L  L  H  Y  I  L  C  T  A  C  Q  L  F  H  *  P  I  M  L  C  I  Y  L  D  I  A  C  C  R  A  S  K  R  S  D  L  L  V  I  I  K  I  P  F  L  L  C  Q  M  M  H  L  E  S  K  N  P  K  N  L  C  *  C  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55291" stop="55161"/>
                    <exon start="55075" stop="54929"/>
                    <exon start="54147" stop="54012"/>
                    <exon start="53594" stop="53496"/>
                    <exon start="53321" stop="53127"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDSSIMKRKGMEELDDQNRPIDRLPFDLLAHIFAMLTCFKDLAQTSAVCRKWRQGVKESLARREKMSFSGWKVDDDSTTRLVLHAYSLKELDISRSRWGCQITDRGLYQLSTAKCVSNLSSLSLWGTTGITDTGVVQLISRANSLQHLNIGGTFITDTSLFAIAGSCPHLKSIVLWGCRHVTENGLLALVNKCRKLESINAWGMRVTVDCFVGLLTISPALQIEPKGMLPNIAVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="54131" e_stop="54012"/>
            <exon e_start="53570" e_stop="53496"/>
            <exon e_start="53321" e_stop="52939"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="0.000" e_score="0.983"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="54131" e_stop="54012" e_length="120"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54011" i_stop="53571" i_length="441"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53570" e_stop="53496" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="53495" i_stop="53322" i_length="174"/>
          </intron>
          <exon e_serial="3" e_score="0.943">
            <gDNA_exon_boundary e_start="53321" e_stop="52939" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54131" stop="54012"/>
              <exon start="53570" stop="53496"/>
              <exon start="53321" stop="52939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569491" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTGTCAAATAACCGATCGCGGGTTGTACCAATTGTCAACTGCAAAATGTGTCAGCAATCTATCATCACTATCTTTATGGGGCACTACTGGGATCACAGATACAGGTGTTGTTCAGCTG : CATCTGAATATTGGTGGTACATTTATAACAGACACGTCCTTGTTTGCTATTGCTGGTAGCTGCCCACACTTGAAG : TCTATTGTGCTGTGGGGCTGCCGTCATGTAACTGAAAATGGGCTTCTAGCTTTAGTAAATAAGTGTCGCAAACTAGAGTCTATCAATGCATGGGGCATGAGGGTTACCGTGGACTGCTTTGTCGGCCTACTCACTATTAGCCCAGCTCTACAAATAGAACCTAAAGGAATGCTGCCTAATATTGCTGTCTTCTGAGGAGCCTTTAAGTTCCTGTGCGTCCTTTGTCTTTGGAAGGGCAATCCACCTGAATTGTTATTGCATTATATCTTGTGTACAGCTTGTCAATTGTTTCATTGACCAATAATGCTTTGTATTTATTTGGACATTGCCTGCTGCAGGGCGTCGAAAAGATCCGATCTGCTAGTAATTATTAAAATTCCATT</gDNA_template>
            <first_frame> G  C  Q  I  T  D  R  G  L  Y  Q  L  S  T  A  K  C  V  S  N  L  S  S  L  S  L  W  G  T  T  G  I  T  D  T  G  V  V  Q  L  :  H  L  N  I  G  G  T  F  I  T  D  T  S  L  F  A  I  A  G  S  C  P  H  L  K  :  S  I  V  L  W  G  C  R  H  V  T  E  N  G  L  L  A  L  V  N  K  C  R  K  L  E  S  I  N  A  W  G  M  R  V  T  V  D  C  F  V  G  L  L  T  I  S  P  A  L  Q  I  E  P  K  G  M  L  P  N  I  A  V  F  *  G  A  F  K  F  L  C  V  L  C  L  W  K  G  N  P  P  E  L  L  L  H  Y  I  L  C  T  A  C  Q  L  F  H  *  P  I  M  L  C  I  Y  L  D  I  A  C  C  R  A  S  K  R  S  D  L  L  V  I  I  K  I  P   </first_frame>
            <second_frame>  V  V  K  *  P  I  A  G  C  T  N  C  Q  L  Q  N  V  S  A  I  Y  H  H  Y  L  Y  G  A  L  L  G  S  Q  I  Q  V  L  F  S  C :   I  *  I  L  V  V  H  L  *  Q  T  R  P  C  L  L  L  L  V  A  A  H  T  *  S :   L  L  C  C  G  A  A  V  M  *  L  K  M  G  F  *  L  *  *  I  S  V  A  N  *  S  L  S  M  H  G  A  *  G  L  P  W  T  A  L  S  A  Y  S  L  L  A  Q  L  Y  K  *  N  L  K  E  C  C  L  I  L  L  S  S  E  E  P  L  S  S  C  A  S  F  V  F  G  R  A  I  H  L  N  C  Y  C  I  I  S  C  V  Q  L  V  N  C  F  I  D  Q  *  C  F  V  F  I  W  T  L  P  A  A  G  R  R  K  D  P  I  C  *  *  L  L  K  F  H  </second_frame>
            <third_frame>   L  S  N  N  R  S  R  V  V  P  I  V  N  C  K  M  C  Q  Q  S  I  I  T  I  F  M  G  H  Y  W  D  H  R  Y  R  C  C  S  A   : A  S  E  Y  W  W  Y  I  Y  N  R  H  V  L  V  C  Y  C  W  *  L  P  T  L  E   : V  Y  C  A  V  G  L  P  S  C  N  *  K  W  A  S  S  F  S  K  *  V  S  Q  T  R  V  Y  Q  C  M  G  H  E  G  Y  R  G  L  L  C  R  P  T  H  Y  *  P  S  S  T  N  R  T  *  R  N  A  A  *  Y  C  C  L  L  R  S  L  *  V  P  V  R  P  L  S  L  E  G  Q  S  T  *  I  V  I  A  L  Y  L  V  Y  S  L  S  I  V  S  L  T  N  N  A  L  Y  L  F  G  H  C  L  L  Q  G  V  E  K  I  R  S  A  S  N  Y  *  N  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54131" stop="54012"/>
                    <exon start="53570" stop="53496"/>
                    <exon start="53321" stop="53127"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCQITDRGLYQLSTAKCVSNLSSLSLWGTTGITDTGVVQLHLNIGGTFITDTSLFAIAGSCPHLKSIVLWGCRHVTENGLLALVNKCRKLESINAWGMRVTVDCFVGLLTISPALQIEPKGMLPNIAVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="58892" PGL_stop="57619"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58888" e_stop="58717"/>
            <exon e_start="58623" e_stop="58544"/>
            <exon e_start="58458" e_stop="58314"/>
            <exon e_start="58239" e_stop="58108"/>
            <exon e_start="58024" e_stop="57666"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.994"/>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="58888" e_stop="58717" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58716" i_stop="58624" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58623" e_stop="58544" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="58543" i_stop="58459" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58458" e_stop="58314" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58239" e_stop="58108" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="58107" i_stop="58025" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="0.964">
            <gDNA_exon_boundary e_start="58024" e_stop="57666" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58888" stop="58717"/>
              <exon start="58623" stop="58544"/>
              <exon start="58458" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58879" stop="58717"/>
              <exon start="58623" stop="58544"/>
              <exon start="58458" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577729" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAAAAAGCAGGTTGCTTACTTTAAACACTTTTTTTATCTATTTCAGAAACAGCAAGATATATAGTTTAAAAATATATCCATAAGCAGTTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG : TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG : GAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG : ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC : GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATCAAGGCATTATTTTTGAAATTTCCCCTATTTCGAATTTTTCATTATTTTACGCTTTATTT</gDNA_template>
            <first_frame> L  K  S  R  L  L  T  L  N  T  F  F  I  Y  F  R  N  S  K  I  Y  S  L  K  I  Y  P  *  A  V  S  N  D  E  Q  W  R  K  Q  *  T  P  R  S  W  T  Q  E  S  L  A  K  R  C  P  I  S   : V  H  S  *  N  K  C  V  P  E  R  A  *  S  H  E  R  A  K  R  D  Y  C  K  T  P  L  :  E  P  Y  D  H  L  C  *  *  R  S  I  F  E  Y  A  S  Q  T  H  Q  C  Q  K  H  H  G  N  W  G  F  Y  W  L  L  S  A  G  N  C  Y  G  S  S  *  *  W  Q   : D  S  S  N  G  Y  *  P  R  *  L  *  D  W  S  S  S  N  *  K  G  W  S  S  A  Q  N  *  I  Q  R  R  P  C  T  S  C  S  *  P  N  D  *  R   : R  P  I  P  W  I  I  *  F  H  I  C  G  C  *  Q  G  Q  L  F  E  L  S  Q  E  I  N  R  L  G  *  G  W  W  S  N  W  V  *  Q  Y  S  M  E  R  I  S  G  G  T  T  *  C  T  P  *  K  I  R  *  V  L  *  G  F  R  I  G  T  Q  Q  G  L  G  C  *  F  Q  N  *  N  L  S  A  S  C  W  *  W  Y  H  F  V  S  P  H  Q  L  K  Y  Q  G  I  I  F  E  I  S  P  I  S  N  F  S  L  F  Y  A  L  F </first_frame>
            <second_frame>  *  K  A  G  C  L  L  *  T  L  F  L  S  I  S  E  T  A  R  Y  I  V  *  K  Y  I  H  K  Q  L  A  M  M  S  N  G  E  N  S  R  H  Q  E  V  G  H  K  S  L  L  Q  S  D  A  L  Y  Q  :  Y  I  L  E  T  S  V  Y  P  R  E  P  E  A  M  K  E  L  R  E  I  T  A  K  H  P  W :   N  L  M  T  T  S  A  D  E  G  Q  F  L  N  M  L  L  K  L  I  N  A  K  N  T  M  E  I  G  V  F  T  G  Y  S  L  L  A  T  A  M  A  L  P  D  D  G  K  :  I  L  A  M  D  I  N  R  D  N  Y  E  I  G  L  P  V  I  E  K  A  G  L  A  H  K  I  E  F  R  E  G  P  A  L  P  V  L  D  Q  M  I  E  D  :  G  Q  Y  H  G  S  Y  D  F  I  F  V  D  A  D  K  D  N  Y  L  N  Y  H  K  R  L  I  D  L  V  K  V  G  G  V  I  G  Y  D  N  T  L  W  N  G  S  V  V  A  P  P  D  A  P  L  R  K  Y  V  R  Y  Y  R  D  F  V  L  E  L  N  K  A  L  A  A  D  S  R  I  E  I  C  Q  L  P  V  G  D  G  I  T  L  C  R  R  I  S  *  N  I  K  A  L  F  L  K  F  P  L  F  R  I  F  H  Y  F  T  L  Y   </second_frame>
            <third_frame>   K  K  Q  V  A  Y  F  K  H  F  F  Y  L  F  Q  K  Q  Q  D  I  *  F  K  N  I  S  I  S  S  *  Q  *  *  A  M  E  K  T  V  D  T  K  K  L  D  T  R  V  S  C  K  A  M  P  Y  I  S :   T  F  L  K  Q  V  C  T  R  E  S  L  K  P  *  K  S  *  E  R  L  L  Q  N  T  L   : G  T  L  *  P  P  L  L  M  K  V  N  F  *  I  C  F  S  N  S  S  M  P  K  T  P  W  K  L  G  F  L  L  V  T  L  C  W  Q  L  L  W  L  F  L  M  M  A  R :   F  *  Q  W  I  L  T  A  I  T  M  R  L  V  F  Q  *  L  K  R  L  V  *  R  T  K  L  N  S  E  K  A  L  H  F  L  F  L  T  K  *  L  K  T :   A  N  T  M  D  H  M  I  S  Y  L  W  M  L  T  R  T  T  I  *  I  I  T  R  D  *  S  T  W  L  R  L  V  E  *  L  G  M  T  I  L  Y  G  T  D  Q  W  W  H  H  L  M  H  P  L  E  N  T  L  G  I  I  G  I  S  Y  W  N  S  T  R  P  W  L  L  I  P  E  L  K  S  V  S  F  L  L  V  M  V  S  L  C  V  A  A  S  V  K  I  S  R  H  Y  F  *  N  F  P  Y  F  E  F  F  I  I  L  R  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58818" stop="58717"/>
                    <exon start="58623" stop="58544"/>
                    <exon start="58458" stop="58314"/>
                    <exon start="58239" stop="58108"/>
                    <exon start="58024" stop="57731"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYIHKQLAMMSNGENSRHQEVGHKSLLQSDALYQYILETSVYPREPEAMKELREITAKHPWNLMTTSADEGQFLNMLLKLINAKNTMEIGVFTGYSLLATAMALPDDGKILAMDINRDNYEIGLPVIEKAGLAHKIEFREGPALPVLDQMIEDGQYHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADSRIEICQLPVGDGITLCRRIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58847" e_stop="58717"/>
            <exon e_start="58623" e_stop="58314"/>
            <exon e_start="58239" e_stop="58149"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.977"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="58847" e_stop="58717" e_length="131"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58716" i_stop="58624" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58623" e_stop="58314" e_length="310"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58239" e_stop="58149" e_length="91"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58847" stop="58717"/>
              <exon start="58623" stop="58314"/>
              <exon start="58239" stop="58149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590082" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAGAAACAGCAAGATATATAGTTTAAAAATATATCCATAAGCAGTTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG : TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTGGTAATAACTCATTTTCTCACTAATTACTTCATCCAATTCGATACTTATTGTATGCTGATATCTTCATTTTGTGGAAAAAAAACAGGAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG : ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAG</gDNA_template>
            <first_frame> F  Q  K  Q  Q  D  I  *  F  K  N  I  S  I  S  S  *  Q  *  *  A  M  E  K  T  V  D  T  K  K  L  D  T  R  V  S  C  K  A  M  P  Y  I  S :   T  F  L  K  Q  V  C  T  R  E  S  L  K  P  *  K  S  *  E  R  L  L  Q  N  T  L  G  N  N  S  F  S  H  *  L  L  H  P  I  R  Y  L  L  Y  A  D  I  F  I  L  W  K  K  N  R  N  L  M  T  T  S  A  D  E  G  Q  F  L  N  M  L  L  K  L  I  N  A  K  N  T  M  E  I  G  V  F  T  G  Y  S  L  L  A  T  A  M  A  L  P  D  D  G  K  :  I  L  A  M  D  I  N  R  D  N  Y  E  I  G  L  P  V  I  E  K  A  G  L  A  H  K  I  E  F  R  </first_frame>
            <second_frame>  F  R  N  S  K  I  Y  S  L  K  I  Y  P  *  A  V  S  N  D  E  Q  W  R  K  Q  *  T  P  R  S  W  T  Q  E  S  L  A  K  R  C  P  I  S   : V  H  S  *  N  K  C  V  P  E  R  A  *  S  H  E  R  A  K  R  D  Y  C  K  T  P  L  V  I  T  H  F  L  T  N  Y  F  I  Q  F  D  T  Y  C  M  L  I  S  S  F  C  G  K  K  T  G  T  L  *  P  P  L  L  M  K  V  N  F  *  I  C  F  S  N  S  S  M  P  K  T  P  W  K  L  G  F  L  L  V  T  L  C  W  Q  L  L  W  L  F  L  M  M  A  R :   F  *  Q  W  I  L  T  A  I  T  M  R  L  V  F  Q  *  L  K  R  L  V  *  R  T  K  L  N  S  E </second_frame>
            <third_frame>   S  E  T  A  R  Y  I  V  *  K  Y  I  H  K  Q  L  A  M  M  S  N  G  E  N  S  R  H  Q  E  V  G  H  K  S  L  L  Q  S  D  A  L  Y  Q  :  Y  I  L  E  T  S  V  Y  P  R  E  P  E  A  M  K  E  L  R  E  I  T  A  K  H  P  W  *  *  L  I  F  S  L  I  T  S  S  N  S  I  L  I  V  C  *  Y  L  H  F  V  E  K  K  Q  E  P  Y  D  H  L  C  *  *  R  S  I  F  E  Y  A  S  Q  T  H  Q  C  Q  K  H  H  G  N  W  G  F  Y  W  L  L  S  A  G  N  C  Y  G  S  S  *  *  W  Q   : D  S  S  N  G  Y  *  P  R  *  L  *  D  W  S  S  S  N  *  K  G  W  S  S  A  Q  N  *  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58520" stop="58314"/>
                    <exon start="58239" stop="58150"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLHPIRYLLYADIFILWKKNRNLMTTSADEGQFLNMLLKLINAKNTMEIGVFTGYSLLATAMALPDDGKILAMDINRDNYEIGLPVIEKAGLAHKIEFR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="58892" e_stop="58878"/>
            <exon e_start="58800" e_stop="58717"/>
            <exon e_start="58623" e_stop="58544"/>
            <exon e_start="58458" e_stop="58314"/>
            <exon e_start="58239" e_stop="58108"/>
            <exon e_start="58024" e_stop="57619"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.763" acc_prob="0.901" e_score="0.533"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.917"/>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.533">
            <gDNA_exon_boundary e_start="58892" e_stop="58878" e_length="15"/>
          </exon>
          <intron i_serial="1" don_prob="0.763" acc_prob="0.901">
            <gDNA_intron_boundary i_start="58877" i_stop="58801" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="0.917">
            <gDNA_exon_boundary e_start="58800" e_stop="58717" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58716" i_stop="58624" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58623" e_stop="58544" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="58543" i_stop="58459" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58458" e_stop="58314" e_length="145"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58313" i_stop="58240" i_length="74"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58239" e_stop="58108" e_length="132"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="58107" i_stop="58025" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="58024" e_stop="57619" e_length="406"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58892" stop="58878"/>
              <exon start="58800" stop="58717"/>
              <exon start="58623" stop="58544"/>
              <exon start="58458" stop="58314"/>
              <exon start="58239" stop="58108"/>
              <exon start="58024" stop="57619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577382" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTCTAAAAAGCAG : TTAGCAATGATGAGCAATGGAGAAAACAGTAGACACCAAGAAGTTGGACACAAGAGTCTCTTGCAAAGCGATGCCCTATATCAG : TACATTCTTGAAACAAGTGTGTACCCGAGAGAGCCTGAAGCCATGAAAGAGCTAAGAGAGATTACTGCAAAACACCCTTG : GAACCTTATGACCACCTCTGCTGATGAAGGTCAATTTTTGAATATGCTTCTCAAACTCATCAATGCCAAAAACACCATGGAAATTGGGGTTTTTACTGGTTACTCTCTGCTGGCAACTGCTATGGCTCTTCCTGATGATGGCAAG : ATTCTAGCAATGGATATTAACCGCGATAACTATGAGATTGGTCTTCCAGTAATTGAAAAGGCTGGTCTAGCGCACAAAATTGAATTCAGAGAAGGCCCTGCACTTCCTGTTCTTGACCAAATGATTGAAGAC : GGCCAATACCATGGATCATATGATTTCATATTTGTGGATGCTGACAAGGACAACTATTTGAATTATCACAAGAGATTAATCGACTTGGTTAAGGTTGGTGGAGTAATTGGGTATGACAATACTCTATGGAACGGATCAGTGGTGGCACCACCTGATGCACCCCTTAGAAAATACGTTAGGTATTATAGGGATTTCGTATTGGAACTCAACAAGGCCTTGGCTGCTGATTCCAGAATTGAAATCTGTCAGCTTCCTGTTGGTGATGGTATCACTTTGTGTCGCCGCATCAGTTAAAATATCAAGGCATTATTTTTGAAATTTCCCCTATTTCGAATTTTTCATTATTTTACGCTTTATTTTTAATTCTGTCTTTTCTGGTAAAAAATTGTTGTCTATGTACCTATTG</gDNA_template>
            <first_frame> I  S  K  K  Q  :  L  A  M  M  S  N  G  E  N  S  R  H  Q  E  V  G  H  K  S  L  L  Q  S  D  A  L  Y  Q  :  Y  I  L  E  T  S  V  Y  P  R  E  P  E  A  M  K  E  L  R  E  I  T  A  K  H  P  W :   N  L  M  T  T  S  A  D  E  G  Q  F  L  N  M  L  L  K  L  I  N  A  K  N  T  M  E  I  G  V  F  T  G  Y  S  L  L  A  T  A  M  A  L  P  D  D  G  K  :  I  L  A  M  D  I  N  R  D  N  Y  E  I  G  L  P  V  I  E  K  A  G  L  A  H  K  I  E  F  R  E  G  P  A  L  P  V  L  D  Q  M  I  E  D  :  G  Q  Y  H  G  S  Y  D  F  I  F  V  D  A  D  K  D  N  Y  L  N  Y  H  K  R  L  I  D  L  V  K  V  G  G  V  I  G  Y  D  N  T  L  W  N  G  S  V  V  A  P  P  D  A  P  L  R  K  Y  V  R  Y  Y  R  D  F  V  L  E  L  N  K  A  L  A  A  D  S  R  I  E  I  C  Q  L  P  V  G  D  G  I  T  L  C  R  R  I  S  *  N  I  K  A  L  F  L  K  F  P  L  F  R  I  F  H  Y  F  T  L  Y  F  *  F  C  L  F  W  *  K  I  V  V  Y  V  P  I  </first_frame>
            <second_frame>  S  L  K  S  S :   *  Q  *  *  A  M  E  K  T  V  D  T  K  K  L  D  T  R  V  S  C  K  A  M  P  Y  I  S :   T  F  L  K  Q  V  C  T  R  E  S  L  K  P  *  K  S  *  E  R  L  L  Q  N  T  L   : G  T  L  *  P  P  L  L  M  K  V  N  F  *  I  C  F  S  N  S  S  M  P  K  T  P  W  K  L  G  F  L  L  V  T  L  C  W  Q  L  L  W  L  F  L  M  M  A  R :   F  *  Q  W  I  L  T  A  I  T  M  R  L  V  F  Q  *  L  K  R  L  V  *  R  T  K  L  N  S  E  K  A  L  H  F  L  F  L  T  K  *  L  K  T :   A  N  T  M  D  H  M  I  S  Y  L  W  M  L  T  R  T  T  I  *  I  I  T  R  D  *  S  T  W  L  R  L  V  E  *  L  G  M  T  I  L  Y  G  T  D  Q  W  W  H  H  L  M  H  P  L  E  N  T  L  G  I  I  G  I  S  Y  W  N  S  T  R  P  W  L  L  I  P  E  L  K  S  V  S  F  L  L  V  M  V  S  L  C  V  A  A  S  V  K  I  S  R  H  Y  F  *  N  F  P  Y  F  E  F  F  I  I  L  R  F  I  F  N  S  V  F  S  G  K  K  L  L  S  M  Y  L  L </second_frame>
            <third_frame>   L  *  K  A   : V  S  N  D  E  Q  W  R  K  Q  *  T  P  R  S  W  T  Q  E  S  L  A  K  R  C  P  I  S   : V  H  S  *  N  K  C  V  P  E  R  A  *  S  H  E  R  A  K  R  D  Y  C  K  T  P  L  :  E  P  Y  D  H  L  C  *  *  R  S  I  F  E  Y  A  S  Q  T  H  Q  C  Q  K  H  H  G  N  W  G  F  Y  W  L  L  S  A  G  N  C  Y  G  S  S  *  *  W  Q   : D  S  S  N  G  Y  *  P  R  *  L  *  D  W  S  S  S  N  *  K  G  W  S  S  A  Q  N  *  I  Q  R  R  P  C  T  S  C  S  *  P  N  D  *  R   : R  P  I  P  W  I  I  *  F  H  I  C  G  C  *  Q  G  Q  L  F  E  L  S  Q  E  I  N  R  L  G  *  G  W  W  S  N  W  V  *  Q  Y  S  M  E  R  I  S  G  G  T  T  *  C  T  P  *  K  I  R  *  V  L  *  G  F  R  I  G  T  Q  Q  G  L  G  C  *  F  Q  N  *  N  L  S  A  S  C  W  *  W  Y  H  F  V  S  P  H  Q  L  K  Y  Q  G  I  I  F  E  I  S  P  I  S  N  F  S  L  F  Y  A  L  F  L  I  L  S  F  L  V  K  N  C  C  L  C  T  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58892" stop="58878"/>
                    <exon start="58800" stop="58717"/>
                    <exon start="58623" stop="58544"/>
                    <exon start="58458" stop="58314"/>
                    <exon start="58239" stop="58108"/>
                    <exon start="58024" stop="57731"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISKKQLAMMSNGENSRHQEVGHKSLLQSDALYQYILETSVYPREPEAMKELREITAKHPWNLMTTSADEGQFLNMLLKLINAKNTMEIGVFTGYSLLATAMALPDDGKILAMDINRDNYEIGLPVIEKAGLAHKIEFREGPALPVLDQMIEDGQYHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADSRIEICQLPVGDGITLCRRIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="85030" PGL_stop="86379"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85030" e_stop="85462"/>
            <exon e_start="85597" e_stop="85698"/>
            <exon e_start="85782" e_stop="85847"/>
            <exon e_start="85972" e_stop="86037"/>
            <exon e_start="86315" e_stop="86379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.958"/>
          <exon-intron don_prob="0.998" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.802" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="85030" e_stop="85462" e_length="433"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="85463" i_stop="85596" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85597" e_stop="85698" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.929">
            <gDNA_intron_boundary i_start="85699" i_stop="85781" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85782" e_stop="85847" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.802" acc_prob="0.991">
            <gDNA_intron_boundary i_start="85848" i_stop="85971" i_length="124"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85972" e_stop="86037" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.963">
            <gDNA_intron_boundary i_start="86038" i_stop="86314" i_length="277"/>
          </intron>
          <exon e_serial="5" e_score="0.969">
            <gDNA_exon_boundary e_start="86315" e_stop="86379" e_length="65"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85030" stop="85462"/>
              <exon start="85597" stop="85698"/>
              <exon start="85782" stop="85847"/>
              <exon start="85972" stop="86037"/>
              <exon start="86315" stop="86379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567860" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTACATGTAAAACAGTGTGAACGTAGACAAAATTAACTTGATCTGCTCAACACTGAACTTGATTTTGCTGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG : GATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAG : AGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAG : ACTGACAAGGCTTCAATGCTTGATGAAGCCATTGAGTATCTTAAGCAGCTTCAGCTCCAAGTACAG : ATGTTGACAATGAGAAACGGGTTAAACATGTATCCTCTTGGCCTGCCACGAATGCTACAACAAAA</gDNA_template>
            <first_frame> S  Y  M  *  N  S  V  N  V  D  K  I  N  L  I  C  S  T  L  N  L  I  L  L  D  Y  N  G  Q  Q  Q  C  L  L  S  Q  C  *  F  F  F  D  *  S  *  S  *  T  R  *  Y  F  C  V  S  S  S  Y  S  T  S  F  F  V  F  V  F  I  F  I  *  F  Y  G  P  E  E  *  *  N  A  I  F  L  I  I  T  S  S  Y  A  *  *  *  S  T  G  *  F  V  I  H  D  E  F  I  S  L  R  H  F  L  V  F  L  W  G  L  *  W  C  N  Y  C  F  F  L  I  C  W  D  H  R  L  R  S  G  *  V  *  M  *  K  *   : G  W  Y  R  G  F  G  G  G  S  F  S  S  T  A  I  S  *  H  F  Q  E  K  Q  S  S  *  S  A  Q  F  V  *  K   : E  E  K  K  Q  D  *  *  E  D  E  S  I  A  K  T  Y  S  K  F  K  *   : D  *  Q  G  F  N  A  *  *  S  H  *  V  S  *  A  A  S  A  P  S  T   : D  V  D  N  E  K  R  V  K  H  V  S  S  W  P  A  T  N  A  T  T  K </first_frame>
            <second_frame>  P  T  C  K  T  V  *  T  *  T  K  L  T  *  S  A  Q  H  *  T  *  F  C  W  T  I  M  A  N  N  N  V  Y  Y  H  N  A  N  F  S  L  T  D  P  D  P  E  P  D  D  I  S  V  F  L  R  H  I  L  L  P  S  S  S  S  S  S  S  S  S  N  F  M  A  L  K  S  N  E  M  Q  Y  S  S  S  L  P  H  L  M  P  N  N  N  Q  Q  G  N  L  S  S  M  M  N  S  S  A  C  G  I  F  S  S  S  Y  G  V  C  N  G  A  T  T  V  S  S  S  S  V  G  T  I  D  Y  D  P  D  E  Y  E  C  E  S  E  :  D  G  T  E  D  L  G  A  E  A  S  V  Q  P  P  S  R  N  T  S  K  R  S  R  A  A  E  V  H  N  L  S  E  K  :  R  R  R  S  R  I  N  E  K  M  K  A  L  Q  K  L  I  P  N  S  N  K  :  T  D  K  A  S  M  L  D  E  A  I  E  Y  L  K  Q  L  Q  L  Q  V  Q  :  M  L  T  M  R  N  G  L  N  M  Y  P  L  G  L  P  R  M  L  Q  Q   </second_frame>
            <third_frame>   L  H  V  K  Q  C  E  R  R  Q  N  *  L  D  L  L  N  T  E  L  D  F  A  G  L  *  W  P  T  T  M  F  I  I  T  M  L  I  F  L  *  L  I  L  I  L  N  Q  M  I  F  L  C  F  F  V  I  F  Y  F  L  L  R  L  R  L  H  L  H  L  I  L  W  P  *  R  V  M  K  C  N  I  P  H  H  Y  L  I  L  C  L  I  I  I  N  R  V  I  C  H  P  *  *  I  H  Q  L  A  A  F  S  R  L  P  M  G  F  V  M  V  Q  L  L  F  L  P  H  L  L  G  P  *  I  T  I  R  M  S  M  N  V  K  V  R :   M  V  Q  R  I  W  G  R  K  L  Q  F  N  R  H  L  V  T  L  P  R  E  A  E  Q  L  K  C  T  I  C  L  K  R :   G  E  E  A  G  L  M  R  R  *  K  H  C  K  N  L  F  Q  I  Q  I  R :   L  T  R  L  Q  C  L  M  K  P  L  S  I  L  S  S  F  S  S  K  Y  R :   C  *  Q  *  E  T  G  *  T  C  I  L  L  A  C  H  E  C  Y  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85094" stop="85462"/>
                    <exon start="85597" stop="85698"/>
                    <exon start="85782" stop="85847"/>
                    <exon start="85972" stop="86037"/>
                    <exon start="86315" stop="86377"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCWTIMANNNVYYHNANFSLTDPDPEPDDISVFLRHILLPSSSSSSSSSNFMALKSNEMQYSSSLPHLMPNNNQQGNLSSMMNSSACGIFSSSYGVCNGATTVSSSSVGTIDYDPDEYECESEDGTEDLGAEASVQPPSRNTSKRSRAAEVHNLSEKRRRSRINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLTMRNGLNMYPLGLPRMLQQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="86390" PGL_stop="87359"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86390" e_stop="86632"/>
            <exon e_start="86744" e_stop="86813"/>
            <exon e_start="86904" e_stop="87054"/>
            <exon e_start="87172" e_stop="87359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.837" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.534" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86390" e_stop="86632" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.900">
            <gDNA_intron_boundary i_start="86633" i_stop="86743" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86744" e_stop="86813" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.837" acc_prob="0.997">
            <gDNA_intron_boundary i_start="86814" i_stop="86903" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86904" e_stop="87054" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.534">
            <gDNA_intron_boundary i_start="87055" i_stop="87171" i_length="117"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87172" e_stop="87359" e_length="188"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86390" stop="86632"/>
              <exon start="86744" stop="86813"/>
              <exon start="86904" stop="87054"/>
              <exon start="87172" stop="87359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600981" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCAAAAAGTAGGTTTGTGCGAGGGGAATGCATTCACAAATGCCAAAGTGGCTGGGAATCTACAAGTTAACCAAGACGCCTCGTTAAATGCTATTTTCAACCCAACTGAAAATTGTACAGAAACTAAGGTAACACCACCGATAACTATGTCAAATATAAACCGGTCAGACAGTGCGTTTGAGCTTGAGTCATCGATGAATATTCACCTTGATCCCTTTCAGCTCTCAAGATCTACCAGCAAG : GAAATTTGGAGGGAGGATGACTTACCTTTATATGGTATGAATGAGCTAACGACCAAAACTGCATCAACTG : GATCAAATCTGGCATTCTCAGTTCCCCTAGATACGGATGCATCTAACCTGAAGAGAAGCACTCGGGAGGCCTGCTTGCTTCGATATCAGTTTGGTGCTGTGAATGAAACCAATCTGGATTGTGACCAACTTCTTTCCCAACAACTGTATAG : CAACTTCTGAATTTTGGCCTGCATCGCCTTGCTGGATTTTGTTGAAGTAATGAGACATGCATTTTGCTGCTTAGGACGTTTAATGTTGTTAACTTTTGGGCTCACTAGCCACTGTAATGAATGAATGGAATATAAATGAAAAGATTGGACTAGTTTCTATCTTGTTATGAAATACGAAAATTACTACT</gDNA_template>
            <first_frame> H  Q  K  V  G  L  C  E  G  N  A  F  T  N  A  K  V  A  G  N  L  Q  V  N  Q  D  A  S  L  N  A  I  F  N  P  T  E  N  C  T  E  T  K  V  T  P  P  I  T  M  S  N  I  N  R  S  D  S  A  F  E  L  E  S  S  M  N  I  H  L  D  P  F  Q  L  S  R  S  T  S  K  :  E  I  W  R  E  D  D  L  P  L  Y  G  M  N  E  L  T  T  K  T  A  S  T   : G  S  N  L  A  F  S  V  P  L  D  T  D  A  S  N  L  K  R  S  T  R  E  A  C  L  L  R  Y  Q  F  G  A  V  N  E  T  N  L  D  C  D  Q  L  L  S  Q  Q  L  Y  S :   N  F  *  I  L  A  C  I  A  L  L  D  F  V  E  V  M  R  H  A  F  C  C  L  G  R  L  M  L  L  T  F  G  L  T  S  H  C  N  E  *  M  E  Y  K  *  K  D  W  T  S  F  Y  L  V  M  K  Y  E  N  Y  Y  </first_frame>
            <second_frame>  I  K  K  *  V  C  A  R  G  M  H  S  Q  M  P  K  W  L  G  I  Y  K  L  T  K  T  P  R  *  M  L  F  S  T  Q  L  K  I  V  Q  K  L  R  *  H  H  R  *  L  C  Q  I  *  T  G  Q  T  V  R  L  S  L  S  H  R  *  I  F  T  L  I  P  F  S  S  Q  D  L  P  A  R :   K  F  G  G  R  M  T  Y  L  Y  M  V  *  M  S  *  R  P  K  L  H  Q  L  :  D  Q  I  W  H  S  Q  F  P  *  I  R  M  H  L  T  *  R  E  A  L  G  R  P  A  C  F  D  I  S  L  V  L  *  M  K  P  I  W  I  V  T  N  F  F  P  N  N  C  I   : A  T  S  E  F  W  P  A  S  P  C  W  I  L  L  K  *  *  D  M  H  F  A  A  *  D  V  *  C  C  *  L  L  G  S  L  A  T  V  M  N  E  W  N  I  N  E  K  I  G  L  V  S  I  L  L  *  N  T  K  I  T  T </second_frame>
            <third_frame>   S  K  S  R  F  V  R  G  E  C  I  H  K  C  Q  S  G  W  E  S  T  S  *  P  R  R  L  V  K  C  Y  F  Q  P  N  *  K  L  Y  R  N  *  G  N  T  T  D  N  Y  V  K  Y  K  P  V  R  Q  C  V  *  A  *  V  I  D  E  Y  S  P  *  S  L  S  A  L  K  I  Y  Q  Q   : G  N  L  E  G  G  *  L  T  F  I  W  Y  E  *  A  N  D  Q  N  C  I  N  W :   I  K  S  G  I  L  S  S  P  R  Y  G  C  I  *  P  E  E  K  H  S  G  G  L  L  A  S  I  S  V  W  C  C  E  *  N  Q  S  G  L  *  P  T  S  F  P  T  T  V  *  :  Q  L  L  N  F  G  L  H  R  L  A  G  F  C  *  S  N  E  T  C  I  L  L  L  R  T  F  N  V  V  N  F  W  A  H  *  P  L  *  *  M  N  G  I  *  M  K  R  L  D  *  F  L  S  C  Y  E  I  R  K  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0055O24.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86390" stop="86632"/>
                    <exon start="86744" stop="86813"/>
                    <exon start="86904" stop="87054"/>
                    <exon start="87172" stop="87181"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HQKVGLCEGNAFTNAKVAGNLQVNQDASLNAIFNPTENCTETKVTPPITMSNINRSDSAFELESSMNIHLDPFQLSRSTSKEIWREDDLPLYGMNELTTKTASTGSNLAFSVPLDTDASNLKRSTREACLLRYQFGAVNETNLDCDQLLSQQLYSNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 26 chains have been computed
$ 
$ memory statistics:
$ 49008 bytes spliced alignments in total
$ 12 spliced alignments have been stored
$ 4084 bytes was the average size of a spliced alignment
$ 15464 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1933 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 30 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:31:25
-->
