<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:41:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595894" ref_strand="-" ref_description="SGN-U595894 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|116780936|gb|ABK21888.1| (e_value=4e-48) unknown; (*ATH) AT1G20580.1 (e_value=5e-50)  Symbol: None | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative, similar to small nuclear ribonucleoprotein Sm D3 (snRNP core protein D3, Sm-D3) (Mus musculus) SWISS-PROT:P43331 | chr1:7128878-7130631 FORWARD | Alia... ; (*SWP) sp|P62323|SMD3_XENLA (e_value=2e-30) Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3; ">
      <seq>gtttagactctgtcacagtagaagaagctgcactccccactggtcactaaccagcaacgttaggtttactgagaagtaaggaaagcgggaggaatcagccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacagtagagatgaagagtggagagctgtacagaggaagtatggtggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtctaatagtctgagttacattcatctactttgtaacttaacctttttcacatacgactagagaatgctggaatatgagtgcttttcaagttgcctctgtgcttgtacttcacctgtgttaagaaatatggattagtccagttcttcactttttcaccctgggtgccccaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="2174" stop="7090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2474" g_stop="2732" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2733" i_stop="5656" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5657" g_stop="5709" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="312" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5710" i_stop="5781" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5782" g_stop="5848" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="379" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5849" i_stop="5921" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5922" g_stop="5978" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="436" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5979" i_stop="6462" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6463" g_stop="6788" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="762" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-U595894" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595894" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2474" e_stop="2732"/>
          <exon e_start="5657" e_stop="5709"/>
          <exon e_start="5782" e_stop="5848"/>
          <exon e_start="5922" e_stop="5978"/>
          <exon e_start="6463" e_stop="6788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAGACTCTGTCACAGTAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTCACCCTGGGTGCCCCAA</genome_strand>
        <mrna_strand>GTTTAGACTCTGTCACAGTAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTCACCCTGGGTGCCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584331" ref_strand="+" ref_description="SGN-U584331 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|116780936|gb|ABK21888.1| (e_value=3e-48) unknown; (*ATH) AT1G20580.1 (e_value=5e-50)  Symbol: None | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative, similar to small nuclear ribonucleoprotein Sm D3 (snRNP core protein D3, Sm-D3) (Mus musculus) SWISS-PROT:P43331 | chr1:7128878-7130631 FORWARD | Alia... ; (*SWP) sp|P62323|SMD3_XENLA (e_value=1e-30) Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3; ">
      <seq>nactagtctctcgaagctgcactccccactggtcactaaccagcaacgttaggtttactgagaagtaaggaaagcgggaggaatcagccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacagtagagatgaagagtggagagctgtacagaggaagtatggtggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtctaatagtctgagttacattcatctactttgtaacttaacctttttcacatacgactagagaatgctggaatatgagtgcttttcaagttgcctctgtgcttgtacttcacctgtgttaagaaatatggattagtccagttcttcactttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="2197" stop="7072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2492" g_stop="2732" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="248" r_length="240" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2733" i_stop="5656" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5657" g_stop="5709" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="301" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5710" i_stop="5781" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5782" g_stop="5848" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="368" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5849" i_stop="5921" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5922" g_stop="5978" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="425" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5979" i_stop="6462" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6463" g_stop="6772" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="735" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-U584331" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2492" e_stop="2732"/>
          <exon e_start="5657" e_stop="5709"/>
          <exon e_start="5782" e_stop="5848"/>
          <exon e_start="5922" e_stop="5978"/>
          <exon e_start="6463" e_stop="6772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTC</genome_strand>
        <mrna_strand>T-CTCGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595892" ref_strand="-" ref_description="SGN-U595892 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cgtgctattgctatgcgagctcaagctcagtctgctggtcgtggagcaccacctggttggggccctgtgccacctgtaagaaaatgattgctttatgcaggattttattttatctgggttagcaatcgtagaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggttcaatagtctgaggtacattcagctactgtgcaccttaacctttttcccatacgactatagaatgctgcaatatgagtgcttttcaagctgcctctgtgctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="5655" stop="7023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5955" g_stop="5978" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5979" i_stop="6462" i_length="484">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6463" g_stop="6723" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="285" r_length="261" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-U595892" ref_strand="-">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595892" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5955" e_stop="5978"/>
          <exon e_start="6463" e_stop="6723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGT</genome_strand>
        <mrna_strand>CGTGCTATTGCTATGCGAGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGTCTGCTGGTCGTGGAGCACCACCTGGTTGGGGCCCTGTGCCACCTGTAAGAAAATGATTGCTTTATGCAGGATTTTATTTTATCTGGGTTAGCAATCGTAGAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTTCAATAGTCTGAGGTACATTCAGCTACTGTGCACCTTAACCTTTTTCCCATACGACTATAGAATGCTGCAATATGAGTGCTTTTCAAGCTGCCTCTGTGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603131" ref_strand="+" ref_description="SGN-U603131 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|20149050|gb|AAM12780.1| (e_value=2e-42) auxin-induced SAUR-like protein [Capsicum annuum]; (*ATH) AT4G34760.1 (e_value=4e-34) | Symbol: None | auxin-responsive family protein, auxin-induced protein X15, Glycine max, PIR2:JQ1097 | chr4:16582188-16582884 REVERSE | Aliases: F11I11.11; (*SWP) sp|P33080|AX10A_SOYBN (e_value=1e-15) Auxin-induced protein X10A OS=Glycine max; ">
      <seq>gaaatattaataatttctctttctaaaacaacaacaaaatgggtttaaagaaaacaagtagcagcaaacaacaaacagcagctttgaaacaaatgatcaaaagatgttctagttttggaaaaaatgagaataatggtttcccacatgatgttccaaaaggacattttgttgtgtacgttggagaaaatagaagtagatatataatacctatttcttggttaacatatcctcaatttcaaaatttgcttcaaagagctgaagaagaatttggatttagtcatgatatgggcattactattccttgtcatgaacatgatttttgttcacttatttcaatgtttagatgaaacaacaaaatataatcttcctttttcctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="12252" stop="11275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11953" g_stop="11575" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-U603131" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11953" e_stop="11575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATTAATAATTTCTCTTTCTAAAACAACAACAAAATGGGTTTAAAGAAAACAAGTAGCAGCAAACAACAAACAGCAGCTTTGAAACAAATGATCAAAAGATGTTCTAGTTTTGGAAAAAATGAGAATAATGGTTTCCCACATGATGTTCCAAAAGGACATTTTGTTGTGTACGTTGGAGAAAATAGAAGTAGATATATAATACCTATTTCTTGGTTAACATATCCTCAATTTCAAAATTTGCTTCAAAGAGCTGAAGAAGAATTTGGATTTAGTCATGATATGGGCATTACTATTCCTTGTCATGAACATGATTTTTGTTCACTTATTTCAATGTTTAGATGAAACAACAAAATATAATCTTCCTTTTTCCTTTT</genome_strand>
        <mrna_strand>GAAATATTAATAATTTCTCTTTCTAAAACAACAACAAAATGGGTTTAAAGAAAACAAGTAGCAGCAAACAACAAACAGCAGCTTTGAAACAAATGATCAAAAGATGTTCTAGTTTTGGAAAAAATGAGAATAATGGTTTCCCACATGATGTTCCAAAAGGACATTTTGTTGTGTACGTTGGAGAAAATAGAAGTAGATATATAATACCTATTTCTTGGTTAACATATCCTCAATTTCAAAATTTGCTTCAAAGAGCTGAAGAAGAATTTGGATTTAGTCATGATATGGGCATTACTATTCCTTGTCATGAACATGATTTTTGTTCACTTATTTCAATGTTTAGATGAAACAACAAAATATAATCTTCCTTTTTCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571313" ref_strand="+" ref_description="SGN-U571313 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157354884|emb|CAO48230.1| (e_value=5e-43) unnamed; (*ATH) AT5G45600.1 (e_value=4e-40) | Symbol: None | YEATS family protein, contains Pfam domain PF03366: YEATS family | chr5:18505129-18507096 FORWARD | Aliases: K2N11.8, K2N11_8; (*SWP) sp|O95619|YETS4_HUMAN (e_value=5e-22) YEATS domain-containing protein 4 OS=Homo sapiens GN=YEATS4; ">
      <seq>ttttggcgggttagtttggagggaggcgaaaaaccagaattggaacattctttgttccatgcaaatactctctctacttaatacccaaaacccaccatgcctttctaattcctaccaaactcatcagatttccccttttcactcttcaatttcaaaaccctaatttccaatttcttcacaatttccataactaggttcgtttttgcatgtaaaatgcctctaaactcgccgaatgacagtgaacatggtggaaatgagtctgatccaaggctacatctcaccaaaattgcaaacccttccgaagattttgaaaaaaagacttcaagcaagaggctgaaagatgttgaaatttatgtcccaatagtctttggaacaattgcattttggctaggcaagaaagccactgaaactcagtcacataggtggtcagtatatgttcgtggggcaacaaatgaggatcttagtggagttatcaagaaggttgtttttcaattgcatccaagctttaacaatcctgttagagtggtagaatctccaccctttgagttgtcagaatgtggttggggcgaatttgaaattgcaatatcccttctcttccacgatgacgttggtgaaaagaagttggatttgtatcatcatttgaagttatacgcagagaatgagcctggcccccagtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="24769" stop="22886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24469" g_stop="24152" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24151" i_stop="23726" i_length="426">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23725" g_stop="23637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="407" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23636" i_stop="23544" i_length="93">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23543" g_stop="23322" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="629" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23321" i_stop="23235" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23234" g_stop="23186" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="678" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-U571313" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U571313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24469" e_stop="24152"/>
          <exon e_start="23725" e_stop="23637"/>
          <exon e_start="23543" e_stop="23322"/>
          <exon e_start="23234" e_stop="23186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGCGGGTTAGTTTGGAGGGAGGCGAAAAACCAGAATTGGAACATTCTTTGTTCCATGCAAATACTCTCTCTACTTAATACCCAAAACCCACCATGCCTTTCTAATTCCTACCAAACTCATCAGATTTCCCCTTTTCACTCTTCAATTTCAAAACCCTAATTTCCAATTTCTTCACAATTTCCATAACTAGGTTCGTTTTTGCATGTAAAATGCCTCTAAACTCGCCGAATGACAGTGAACATGGTGGAAATGAGTCTGATCCAAGGCTACATCTCACCAAAATTGCAAACCCTTCCGAAGATTTTGAAAAAAAGGTACGTTATTGTTATCTTATAAATTTATGACTAGTACTAATCAGTATTTATTTTCTACTTTTTTTGGTGTATCGTATGCTTTTTTTAACTCCTGTGTTTGTGCGGATATTGGTTCAATTCTGTTTCGTGTTAGGATATTGGTAAAAGTGGAGGTCGTAGACCTTGTTTTTGATAATATAGCGGTTGTAGTTCTTTATTTTTCATATTAGCTGCAGGATTCGATTTTACATAAACGATAGAGTGTAATATTTTATCATGCTGCGTATAATTTATGTATTTGATGAATTATTCTGTTTGAGCAGTTCAGAGTGTTATTTATGTCTACTCTGGAAATATTTTGACCCTTGCGCATTGACTAGTTTCTTTCGCTTCCTAACGTCTTCCATAGCTTGACATATAATTTGATTAATTTCTGGTATTACACAGACTTCAAGCAAGAGGCTGAAAGATGTTGAAATTTATGTCCCAATAGTCTTTGGAACAATTGCATTTTGGCTAGGCAAGAAAGCCACTGAGTAAGTGGGCATGGACATTCTTTTTAGTGCATTTATTTGGTAAGAGTATTATGCTTCTTGATACAATTATAAATATATCGGTTTGTCAATCAGAACTCAGTCACATAGGTGGTCAGTATATGTTCGTGGGGCAACAAATGAGGATCTTAGTGGAGTTATCAAGAAGGTTGTTTTTCAATTGCATCCAAGCTTTAACAATCCTGTTAGAGTGGTAGAATCTCCACCCTTTGAGTTGTCAGAATGTGGTTGGGGCGAATTTGAAATTGCAATATCCCTTCTCTTCCACGATGACGTTGGTGAAAAGAAGTTGGATTTGTAAGTTCTTTACTTTGTGCTTTATCTTCTTTTCCTTAAACTTTGCCTGGCAGTGTGGATATACTTCCAGTGCTCTTGTTTCCCCAGGTATCATCATTTGAAGTTATACGCAGAGAATGAGCCTGGCCCCCAGTCG</genome_strand>
        <mrna_strand>TTTTGGCGGGTTAGTTTGGAGGGAGGCGAAAAACCAGAATTGGAACATTCTTTGTTCCATGCAAATACTCTCTCTACTTAATACCCAAAACCCACCATGCCTTTCTAATTCCTACCAAACTCATCAGATTTCCCCTTTTCACTCTTCAATTTCAAAACCCTAATTTCCAATTTCTTCACAATTTCCATAACTAGGTTCGTTTTTGCATGTAAAATGCCTCTAAACTCGCCGAATGACAGTGAACATGGTGGAAATGAGTCTGATCCAAGGCTACATCTCACCAAAATTGCAAACCCTTCCGAAGATTTTGAAAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCAAGCAAGAGGCTGAAAGATGTTGAAATTTATGTCCCAATAGTCTTTGGAACAATTGCATTTTGGCTAGGCAAGAAAGCCACTGA.............................................................................................AACTCAGTCACATAGGTGGTCAGTATATGTTCGTGGGGCAACAAATGAGGATCTTAGTGGAGTTATCAAGAAGGTTGTTTTTCAATTGCATCCAAGCTTTAACAATCCTGTTAGAGTGGTAGAATCTCCACCCTTTGAGTTGTCAGAATGTGGTTGGGGCGAATTTGAAATTGCAATATCCCTTCTCTTCCACGATGACGTTGGTGAAAAGAAGTTGGATTT.......................................................................................GTATCATCATTTGAAGTTATACGCAGAGAATGAGCCTGGCCCCCAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576696" ref_strand="+" ref_description="SGN-U576696 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|37993504|gb|AAR06858.1| (e_value=8e-132) putative calcium-dependent protein kinase CPK1 adapter protein 2 [Mesembryanthemum crystallinum]; (*ATH) AT2G17990.1 (e_value=9e-105) | Symbol: None | expressed protein | chr2:7834004-7835836 FORWARD | Aliases: T27K22.14, T27K22_14; ">
      <seq>ggtgatgtctaaacttcctgccagtttgttttgtacttttctagccttgggaaagcacagttcgccatgaatttgtatgactttataatgttcttaataaacttttatctggaaatgctgtctttgtggtgtattgtgaatgaaattagactaattcctggggcattgcaaagaacatggtgatggatttattattctttatccaatgtcatgggaattcctcaacaagttttaaacgagtgcagcttaaccttttttaatctgaatattgtgcttgaatgaaatcactgtagaagaatttttatacgatgggccttttttacccgaaggttgagaactgcagtgtggttgttagagttaaagttttgatatgattcccatgtggtccatattaactgtcttctactagttactaaaacccaatgttcctaaaacatttaattttttaggttcctgaactcacatcagtgacttgataaggtgatggcgggggagggaaatattgatctctcagctttaaaatcccaattgactcaaactgacgttacttggaagctagagatggagaaaagccagtcccaagtggatgctttacaagcaaaactgttggaggtaaaagcttctattcagggatcagaagaagatacaaagaaggagttagatgttctatggcatagagtaagaactgctacaacattgatgacgtacttgaaagctaaagccagagtcgtggctgttccagatttggcccattcctcatgcggcatcaaagaactagatggagtgggtattgttgataaaaatggtataccattatccagttggactagggatgttgatctctcatcttttaatgatgctgatgatgaattatggattagactttcgagtaaacatggtcaacttgatgaacaagatggatcttatatgagtgaattactcagaagtgtacaattggttacagatgttatggaaagtcttgtcaagaggattataatggcggaatctgaaactgctatagagaaagacaaggtaacagtaggtgaagaagagattaaaaggaagacgctccttattgaaaacatgtctattaagttagaggaaatggaaagatttgctctgggtacaaatcttatcctgactgagatgcggcagagagttgaagatttggttgaagaaacttctagacagaggcagagagctgcagaaaatgagcaggagctttgtcgtgttaagaccgactttgagtctctaaaatcctatgtcagtaatctcgttagtgtgagagaaacaattctatcatcagaaaagcaattccagacaattgaaaggctttttgagcggctggtcgccaagtcaacacaactggagagtgagaagacgcagaaagaggctgaagtagaaaaactgatggaagaaaatgtgaggttgactgctctgcttgataagaaagaagcacagcttttggctatgaatgaacagtgcaaagttatggcgttaagtgcttcaaatatttagttcagtgtgtttagaccctttgcttcttttcgtgtttaatgtcacctgcttaaaaaggtgaagactgcaaaaccttatatccagtttatgcaactctgagtgtctcattgataaaatgcatatttatcgtcaaatctaatggaaaaactcgacaccctcagaggtgtagtgcctttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="29384" stop="25165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29085" g_stop="27743" g_length="1343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1343" r_length="1343" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27742" i_stop="25799" i_length="1944">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25798" g_stop="25444" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1344" r_stop="1697" r_length="354" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-U576696" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1698</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U576696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29085" e_stop="27743"/>
          <exon e_start="25798" e_stop="25444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGATGTCTAAACTTCCTGCCAGTTTGTTTTGTACTTTTCTAGCCTTGGGAAAGCACAGTTCGCCATGAATTTGTATGACTTTATAATGTTCTTAATAAACTTTTATCTGGAAATGCTGTCTTTGTGGTGTATTGTGAATGAAATTAGACTAATTCCTGGGGCATTGCAAAGAACATGGTGATGGATTTATTATTCTTTATCCAATGTCATGGGAATTCCTCAACAAGTTTTAAACGAGTGCAGCTTAACCTTTTTTAATCTGAATATTGTGCTTGAATGAAATCACTGTAGAAGAATTTTTATACGATGGGCCTTTTTTACCCGAAGGTTGAGAACTGCAGTGTGGTTGTTAGAGTTAAAGTTTTGATATGATTCCCATGTGGTCCATATTAACTGTCTTCTACTAGTTACTAAAACCCAATGTTCCTAAAACATTTAATTTTTTAGGTTCCTGAACTCACATCAGTGACTTGATAAGGTGATGGCGGGGGAGGGAAATATTGATCTCTCAGCTTTAAAATCCCAATTGACTCAAACTGACGTTACTTGGAAGCTAGAGATGGAGAAAAGCCAGTCCCAAGTGGATGCTTTACAAGCAAAACTGTTGGAGGTAAAAGCTTCTATTCAGGGATCAGAAGAAGATACAAAGAAGGAGTTAGATGTTCTATGGCATAGAGTAAGAACTGCTACAACATTGATGACGTACTTGAAAGCTAAAGCCAGAGTCGTGGCTGTTCCAGATTTGGCCCATTCCTCATGCGGCATCAAAGAACTAGATGGAGTGGGTATTGTTGATAAAAATGGTATACCATTATCCAGTTGGACTAGGGATGTTGATCTCTCATCTTTTAATGATGCTGATGATGAATTATGGATTAGACTTTCGAGTAAACATGGTCAACTTGATGAACAAGATGGATCTTATATGAGTGAATTACTCAGAAGTGTACAATTGGTTACAGATGTTATGGAAAGTCTTGTCAAGAGGATTATAATGGCGGAATCTGAAACTGCTATAGAGAAAGACAAGGTAACAGTAGGTGAAGAAGAGATTAAAAGGAAGACGCTCCTTATTGAAAACATGTCTATTAAGTTAGAGGAAATGGAAAGATTTGCTCTGGGTACAAATCTTATCCTGACTGAGATGCGGCAGAGAGTTGAAGATTTGGTTGAAGAAACTTCTAGACAGAGGCAGAGAGCTGCAGAAAATGAGCAGGAGCTTTGTCGTGTTAAGACCGACTTTGAGTCTCTAAAATCCTATGTCAGTAATCTCGTTAGTGTGAGAGAAACAATTCTATCATCAGAAAAGCAATTCCAGACAATTGAAAGGCTTTTTGAGCGGTAAGTGAATCCCTTTTGTCAAAAAATTTCCATTAACCATAACATGTGCACTGAACTTTTTCTTTTTTTCCTGGCTATACAATGTGTCTGATGCATGAAGTTAAATGTTAAATATATCCTTTTGCCTCACTTTCATAGCACTATATTTTAATACTTGCCATACAACTTGTAACTAGAATACAAGTGTCCAAGCACAACTTCTTCCTGTGTGATCGAATAATACTTGCCTTGCAGCTTGTGTATAATAGTCGCAATACAAATGCACAAGTCTAATGTGTATTTTTGGTAAAATGTTGCGATAGCTCCACTACATTACTACCTTGTTTCTCTGGTCTGGCTGTTTTTTTGTGTATAAAATATTGCTTTTAGGAATTAGAAGTAGTATATATATGTATTTCACCTTAAGGCAGCTATTGATTTAAAGGGAGTGCCAGCATAGATAATTAGATACTCATAGTTGTTCAAGTGTTCTAAACTTTTCTTTTTCTTTGAGTGTGGTTGATTTAGATTATTAATACCATGCTGGACTCTTGACAAGCTTAGTGCTGTAACGTCCCTTTTAAGCTATTGGACTGTTGTAGGATCTTGTTCTTGTAAAGATTTAGGCCACCATATTTCTCTTTTTTATTATTTCCAGGCTTGGGGTGGGATGGGGGATCATTTGAATCTTAACAGTGTTGATCATTGTTCACTGCTAAGGGCTGGGACCATTTGAAATTAACAATGCATTGTTTACATGATATTACAGGGATAACAGAACCAAAAAGGGGAAAAAATCCAAATTGTTGCTTATGGAGTTAATGTTTATTTTATTTTGGTATGTGCTTTGTTGCACTGACTCCCAGATGTAAGACAGATATACCATCTGAGAACTCTACAAGGGGTGAGAAATTAGGGAAAAGATAAAGAAGTGATTGGGAAAGTTTGATTATTCCGTCAAGTTTGGTTGAGAATTTATATTAGTTATTACTAACTTACAATACGGTAAGGTACTGATTCTAGGGAACAAAACATCTCTAAATTTTTGGTTGATGTCTCATTTTATGGTTTTAGACAATTCTCAGCGATGAGCTTGCTTTTGAGGTTGAGCTAAGGTTGAAGGTCCACTTTTTTTAATAGAAATATTTGTGAGAAGTTAGAACAAATAGTCGAAGGTGCAGAGGTTAGAGCCTTTACTCTATATGAAGTGCATCTGCTCTACATTGGCCAAAGAACACAAAATTAAAATAATTTCTCTATTTTTCATAAACTTGCAGGGTAAAATATAAAGTCCCTAATTTTGTTTTTATTTTTTTGTATACGAATAAAAGCATATCAGTCCAGAAACTAAAGAATCTCAAAGTATGAAATAAAACTTGATGATACCAGAATGAAATAATTGAGAATAAACTCGGAAGGTTTTACTGCTAGTTTTTAACACCTTAATCCAATATAAGGCAATAATGAGTATCAAGTTCATCAATTTTAAAACCTAGCTCTCTCAAACTTTTATTAATAGAAAAGGTTGTATTCTCTATCTCTAATGGCATAAATTTGTTCTTTTCTTTTGAGAATGAAGTCGAACAATCTTTTTCTAATTGATAATTAATTGAGATTAGAACTTTTGAGATGCTATATATTTGAAATGATAGCTTCAGTTGCAATATCCTCCATTTCATTACTCTCTTGCTCAACCCAACTAGCATCTTAAATTCGTTGGTAGTTGTACGACCAAGTAACATAGTAGTACAGAACATAAAGAAAGCGTGAACTTTGATGAAGTTTCATCTGATTTGAATTGAGCTAACACAAGGTTTAAACTTTCTGCTCCTTATTTCTGCTGTTCTCAGGCTAAATTTTCTTATATCCGAATTGGCACGAAATGTTTAAGCTGTAATAATTTGATCAACTGATATTTCATCATGCGGAAAAATTGTGTGCTGAGTTTGTTTTATGTGAAACCAGGCTGGTCGCCAAGTCAACACAACTGGAGAGTGAGAAGACGCAGAAAGAGGCTGAAGTAGAAAAACTGATGGAAGAAAATGTGAGGTTGACTGCTCTGCTTGATAAGAAAGAGGCACAGCTTTTGGCTATGAATGAACAGTGCAAAGTTATGGCGTTAAGTGCTTCAAATATTTAGTTCAGTGTGTTTAGACCCTTTGCTTCTTTTCGTGTTTAATGTCACCTGCTTAAAAAGGTGAAGACTGCAAAACCTTATATCCAGTTTATGCAACTCTGAGTGTCTCATTGATAAAATGCATATTTATCCTCAAATCTAATGGAAAAACTAGACACCCTCTTCGGTGTAGTGCCTTTTACA</genome_strand>
        <mrna_strand>GGTGATGTCTAAACTTCCTGCCAGTTTGTTTTGTACTTTTCTAGCCTTGGGAAAGCACAGTTCGCCATGAATTTGTATGACTTTATAATGTTCTTAATAAACTTTTATCTGGAAATGCTGTCTTTGTGGTGTATTGTGAATGAAATTAGACTAATTCCTGGGGCATTGCAAAGAACATGGTGATGGATTTATTATTCTTTATCCAATGTCATGGGAATTCCTCAACAAGTTTTAAACGAGTGCAGCTTAACCTTTTTTAATCTGAATATTGTGCTTGAATGAAATCACTGTAGAAGAATTTTTATACGATGGGCCTTTTTTACCCGAAGGTTGAGAACTGCAGTGTGGTTGTTAGAGTTAAAGTTTTGATATGATTCCCATGTGGTCCATATTAACTGTCTTCTACTAGTTACTAAAACCCAATGTTCCTAAAACATTTAATTTTTTAGGTTCCTGAACTCACATCAGTGACTTGATAAGGTGATGGCGGGGGAGGGAAATATTGATCTCTCAGCTTTAAAATCCCAATTGACTCAAACTGACGTTACTTGGAAGCTAGAGATGGAGAAAAGCCAGTCCCAAGTGGATGCTTTACAAGCAAAACTGTTGGAGGTAAAAGCTTCTATTCAGGGATCAGAAGAAGATACAAAGAAGGAGTTAGATGTTCTATGGCATAGAGTAAGAACTGCTACAACATTGATGACGTACTTGAAAGCTAAAGCCAGAGTCGTGGCTGTTCCAGATTTGGCCCATTCCTCATGCGGCATCAAAGAACTAGATGGAGTGGGTATTGTTGATAAAAATGGTATACCATTATCCAGTTGGACTAGGGATGTTGATCTCTCATCTTTTAATGATGCTGATGATGAATTATGGATTAGACTTTCGAGTAAACATGGTCAACTTGATGAACAAGATGGATCTTATATGAGTGAATTACTCAGAAGTGTACAATTGGTTACAGATGTTATGGAAAGTCTTGTCAAGAGGATTATAATGGCGGAATCTGAAACTGCTATAGAGAAAGACAAGGTAACAGTAGGTGAAGAAGAGATTAAAAGGAAGACGCTCCTTATTGAAAACATGTCTATTAAGTTAGAGGAAATGGAAAGATTTGCTCTGGGTACAAATCTTATCCTGACTGAGATGCGGCAGAGAGTTGAAGATTTGGTTGAAGAAACTTCTAGACAGAGGCAGAGAGCTGCAGAAAATGAGCAGGAGCTTTGTCGTGTTAAGACCGACTTTGAGTCTCTAAAATCCTATGTCAGTAATCTCGTTAGTGTGAGAGAAACAATTCTATCATCAGAAAAGCAATTCCAGACAATTGAAAGGCTTTTTGAGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGCCAAGTCAACACAACTGGAGAGTGAGAAGACGCAGAAAGAGGCTGAAGTAGAAAAACTGATGGAAGAAAATGTGAGGTTGACTGCTCTGCTTGATAAGAAAGAAGCACAGCTTTTGGCTATGAATGAACAGTGCAAAGTTATGGCGTTAAGTGCTTCAAATATTTAGTTCAGTGTGTTTAGACCCTTTGCTTCTTTTCGTGTTTAATGTCACCTGCTTAAAAAGGTGAAGACTGCAAAACCTTATATCCAGTTTATGCAACTCTGAGTGTCTCATTGATAAAATGCATATTTATCGTCAAATCTAATGGAAAAACTCGACACCCTCAGAGGTGTAGTGCC-TTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569712" ref_strand="+" ref_description="SGN-U569712 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157354879|emb|CAO48225.1| (e_value=1e-28) unnamed; (*ATH) AT2G17972.1 (e_value=2e-27) | Symbol: None | expressed protein | chr2:7828667-7829403 FORWARD | Aliases: None; ">
      <seq>acnacgatgctctctacctacccgaaacacttcactcctcttccagtacaacttttctccaaatctcaacatcgccatgtaattcgttttcccatcaaatgcaacagcagcagcagcagtgataatggcaacgaatcgcaaccaaacacggtggagattcgaatcagaagacgtccgtcaaaacgacaaaggcagaaggaagaagaaatgataaatgcagggaaacaagctgttaaacctaaacctccaccaaaggattgggaatcaatgaatctaactgagaaggcaatcgaattgtacgtcggagaaaaaggacttttgttctggctaaacaaatttgcttatgcttctatttttattataattgggggttggatactttttcgatttgttggtcctgcatttgacctttaccagttggatactcctactcctcttgctcctgaatctatgtttaaaggtacaggagacaaaccttgacccactggaaaactcaagtttcagaagaaattttcgctttaattactccaaatttttgtaacttgaaagttattagtactactagatttaagcaaataaacatgtcaattggatactatatatatttgtgaagttcaacgatgatacttgtataagttatgcgagaacatatgtatatatttgtataagtaaaacatgaagcaaatatccccttaatactatttgttgaacttgaaattgtcaacctctttgaatacccaatgacataagaaaatttaagatggtccatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="36326" stop="34956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36026" g_stop="35256" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="771" r_length="771" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-U569712" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U569712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36026" e_stop="35256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACGATGCTCTCTACCTACCCGAAACACTTCACTCCTCTTCCAGTACAACTTTTCTCCAAATCTCAACATCGCCATGTAATTCGTTTTCCCATCAAATGCAACAGCAGCAGCAGCAGTGATAATGGCAACGAATCGCAACCAAACACGGTGGAGATTCGAATCAGAAGACGTCCGTCAAAACGACAAAGGCAGAAGGAAGAAGAAATGATAAATGCAGGGAAACAAGCTGTTAAACCTAAACCTCCACCAAAGGATTGGGAATCAATGAATCTAACTGAGAAGGCAATCGAATTGTACGTCGGAGAAAAAGGACTTTTGTTCTGGCTAAACAAATTTGCTTATGCTTCTATTTTTATTATAATTGGGGGTTGGATACTTTTTCGATTTGTTGGTCCTGCATTTGACCTTTACCAGTTGGATACTCCTACTCCTCTTGCTCCTGAATCTATGTTTAAAGGTACAGGAGACAAACCTTGACCCACTGGAAAACTCAAGTTTCAGAAGAAATTTTCGCTTTAATTACTCCAAATTTTTGTAACTTGAAAGTTATTAGTACTACTAGATTTAAGCAAATAAACATGTCAATTGGATACTATATATATTTGTGAAGTTCAACGATGATACTTGTATAAGTTATGCGAGAACATATGTATATATTTGTATAAGTAAAACATGAAGCAAATATCCCCTTAATACTATTTGTTGAACTTGAAATTGTCAACCTCTTTGAATACCCAATGACATAAGAAAATTTAAGATGGTCCATGA</genome_strand>
        <mrna_strand>ACNACGATGCTCTCTACCTACCCGAAACACTTCACTCCTCTTCCAGTACAACTTTTCTCCAAATCTCAACATCGCCATGTAATTCGTTTTCCCATCAAATGCAACAGCAGCAGCAGCAGTGATAATGGCAACGAATCGCAACCAAACACGGTGGAGATTCGAATCAGAAGACGTCCGTCAAAACGACAAAGGCAGAAGGAAGAAGAAATGATAAATGCAGGGAAACAAGCTGTTAAACCTAAACCTCCACCAAAGGATTGGGAATCAATGAATCTAACTGAGAAGGCAATCGAATTGTACGTCGGAGAAAAAGGACTTTTGTTCTGGCTAAACAAATTTGCTTATGCTTCTATTTTTATTATAATTGGGGGTTGGATACTTTTTCGATTTGTTGGTCCTGCATTTGACCTTTACCAGTTGGATACTCCTACTCCTCTTGCTCCTGAATCTATGTTTAAAGGTACAGGAGACAAACCTTGACCCACTGGAAAACTCAAGTTTCAGAAGAAATTTTCGCTTTAATTACTCCAAATTTTTGTAACTTGAAAGTTATTAGTACTACTAGATTTAAGCAAATAAACATGTCAATTGGATACTATATATATTTGTGAAGTTCAACGATGATACTTGTATAAGTTATGCGAGAACATATGTATATATTTGTATAAGTAAAACATGAAGCAAATATCCCCTTAATACTATTTGTTGAACTTGAAATTGTCAACCTCTTTGAATACCCAATGACATAAGAAAATTTAAGATGGTCCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584838" ref_strand="+" ref_description="SGN-U584838 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157354878|emb|CAO48224.1| (e_value=1e-91) unnamed; (*ATH) AT2G17970.1 (e_value=7e-77) | Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to At2g17960, At4g36090; contains PF03171 2OG-Fe(II) oxygenase superfamily domain | chr2:7826198-7828358 REVERSE | Aliases: T27K22.16, T27K22_16; ">
      <seq>aattcaattcttcaattcaccgagttgactcctccgccatgtccgaccaccagagaactcggaaggacgatcccttccttctcaattacaactccgatgaactcagaatcgcctctgaatttctctccaattggctcccctttctctcccgtgacctctgccgctcctgcacccacaccctctccgaccgcatccgatccctcaattctaaagttagtggtaatgcagaatgcttgaagcaaccaaagaatgtgagtgttttgactccagaacgttgtgattcggatggatgcaatgggagtcaagagaattgtgacaacaattcgcttggaagttggaacgattatggtgacttgaatgataatgcagatacaaactcattggggagttggaaagatggggctggtggggagccctttgaggagctttctgtggacagaaattcatctgacggttgtatagatggcgcagattcacaatctcaatctgttggagaggcatctacaagtgaagcattcaaatcatccttacctgtgactaccccgaaagtgaagatgtcatgggctgatatggctcaggaggatgaacttcaagctgaggaagtgagtgagtcaattgccttgagaagtcaggtgaatggtgtggctgaagaggaaattactaatccggagagtaagcaaaaaacagaattgtcaagggagaaacgagagtacattagattctgtaatgtgaagaggaaaaaggatttcatatgtttggagagggtgagggggaaaattgtgaatatacttgatggattggagctacataagggtgtctttagcgccgctgagcaaattagaatagttaaatatgcggagaagcttgaccagatggggaagaatggggaactgaaagagaggacttatactacaccaacaaagtggatgaggggcaaaggacgtgtgacaatccaatttggctgttgttacaactatgcaccagataagaatggcaatcccccagggatcctcaaaagtgaaactgttgatccattgcctgatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="36722" stop="41656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37022" g_stop="37231" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37232" i_stop="37541" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.834" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37542" g_stop="38228" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="897" r_length="687" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38229" i_stop="40989" i_length="2761">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40990" g_stop="41075" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="898" r_stop="983" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41076" i_stop="41292" i_length="217">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41293" g_stop="41356" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="984" r_stop="1047" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-U584838" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1047</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37022" e_stop="37231"/>
          <exon e_start="37542" e_stop="38228"/>
          <exon e_start="40990" e_stop="41075"/>
          <exon e_start="41293" e_stop="41356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCAATTCTTCAATTCACCGAGTTGACTCCTCCGCCATGTCCGACCACCAGAGAACTCGGAAGGACGATCCCTTCCTTCTCAATTACAACTCCGATGAACTCAGAATCGCCTCTGAATTTCTCTCCAATTGGCTCCCCTTTCTCTCCCGTGACCTCTGCCGCTCCTGCACCCACACCCTCTCCGACCGCATCCGATCCCTCAATTCTAGTAATTTCTCTTTATCCTTCTCTATCCTTATATTAATGTGTGTTAATGCATATGTTTGATATTGAAAAACGGTGTAGTTCGTATACTGATTTGTACTTGCATAAAGTTCACAGCTTTACTCTTTTTATTGGATGAGATTTATCGTGTGTTGCTTCAAGTTTGATTATTTGTTGAAATTTTGTAATAAAGATGTTTTTGGGCAGTTACTTAGTCGTGAAGAACCCTACTATGATTTCTGCTTTTCGGTTATACTTTAATGTTATGAAGGTTGTTAGTTTTCTGATCAGAGACTTTGTGGGTATGATTGCAGAAGTTAGTGGTAATGCAGAATGCTTGAAGCAACCAAAGAATGTGAGTGTTTTGACTCCAGAACGTTGTGATTCGGATGGATGCAATGGGAGTCAAGAGAATTGTGACAACAATTCGCTTGGAAGTTGGAACGATTATGGTGACTTGAATGATAATGCAGATACAAACTCATTGGGGAGTTGGAAAGATGGGGCTGGTGGGGAGCCCTTTGAGGAGCTTTCTGTGGACAGAAATTCATCTGACGGTTGTATAGATGGCGCAGATTCACAATCTCAATCTGTTGGAGAGGCATCTACAAGTGAAGCATTCAAATCATCCTTACCTGTGACTACCCCGAAAGTGAAGATGTCATGGGCTGATATGGCTCAGGAGGATGAACTTCAAGCTGAGGAAGTGAGTGAGTCAATTGCCTTGAGAAGTCAGGTGAATGGTGTGGCTGAAGAGGAAATTACTAATCCGGAGAGTAAGCAAAAAACAGAATTGTCAAGGGAGAAACGAGAGTACATTAGATTCTGTAATGTGAAGAGGAAAAAGGATTTCATATGTTTGGAGAGGGTGAGGGGGAAAATTGTGAATATACTTGATGGATTGGAGCTACATAAGGGTGTCTTTAGCGCCGCTGAGCAAATTAGAATAGTTAAATATGCGGAGAAGCTTGACCAGATGGGGAAGAATGGGGAACTGAAAGGTTTGTTTTACTCTTGATATAGCCCTTAACCATTCTTTTTCCTTTTCTCAAATGGATTTTATTGTCATATTGGGTTTTGCAAATCATGCTTAAAGCAGGTTTAGTTGCTTGCTTGATATTGTGTAGCTGTTTCTGTTTAAACTTCAAGTGTGTTTGAAATTTAAGCTGGTATTTCTGTGAATTAGAACACTCATTTTTAATCCATTTTGTTGTTGTTAGACTTGTGTTAGCATTACAATATTAATGGTGTTTGATGATTGGTAATAACTAGTGTGTCCTCTTTCTTTCTTTTTCTTATTGTTCTCTTTATTTGCTCTTGAGCTCTCTAAATCATGGCATGCAGTCCTGTCACTGACAGAGGGAAAATAATCTGTATTTGTTGCATAGATGTGAGGTTATTTGTCAAATTTATATTTGTTTCCCTGTGAGGTGGTAGGGCTGGCTGATTTTAACGGAGAAATCACACGGCAAGCTCAAAAATTCTGCTTGATTGTGGGTACATTACACAACTGCTAGTTTTGTAGAATGTGAGATGTACCATTGTTGATTCTGATTCAATTTTTCAACAATTTAGCAATGGAGTAAAGCATTTGATGTTAATATAGTTGTTCATGCCTGAATCTTTATTTTGGCAGATAGTCACCCAATTCCTTTTAGGTTCTATGCTATTTAGATGCTGAAATCTTTCAAGTAGGGCGATTGAAATGGAGTTAGTCTATTAGCTTAACTATCAGAAAACTAAGAAAAAGAATTTTGGCTTTGCTTGAGAGAGCATCAGTTTATTGCATTGGGGTTGGCGTGCTTCTTTTTACCTACCAGTATCTTTTACAGTAAGAATCTTATGCAGGAAAACATACCTATTACTCCTTATTTGAGATGATATCTAATCATCCAGATTCAACATTAGATTTCTCTTTTTTGTCTGTTATTGAGAGCTGCAGTAATGTATGTTAAACCAAAGCTGTTTGGGCATCCTAGACTTCAATATATTGAAATGGGGAATCTTGTCTCAGTAATGATTATTCTATTTTAGTTTGTTGATGTTGATATCTATATAAGGTGGTACTGTGGCATGAGAAATTTCTTCTTCCTTTTTTTGTAATTGAAGAAACTTCGTTAAAATGCCTAGTTTTAATGCCAGATGTCTAGGTTTATTGCACATACCTAGATTAATTGCATAGAAATCGAGTAATATGGAAACTTAACTTATTTACCGTGTCTAAACTAAAAGGAAAAAGTCCGCTTCTACTATGGTAACTCTTGGAGACCCACATTGGTGGGTCAAAGTTTACTTGGTCTCTTTATATGGTCTTGGGCAATCCTCACGTCTTGAGCTTAGCTTTTGAAGTTTTATTACGCTCAAGGTCCATTTCTCTAACATGGTATAATAGTCAAGCTCATCAAAATTCATTGTTTCCAATGTTGGGTCCCCTATCTTATATTGTCCATGCTCTAGATTTCCAATCCTGGGCGTATGGGGTGTATTAGCTTCCCATATTGACGGGTCAAGACTTATTTGTTCTCTTTATATGTTCTTGATCAATCTGCACTTTGTGATCTAGCTTTTGAGGTTGAGTTAGGTTTAAGTTGTTTGTACCTGTATCAAGGTCAGTAAAAAATACACAAATATAGACAGAAAATACACTTTTAATCCGAGTCCACAGAAGCTAAGTTGTCTCCTTAAGAAATTTAATCCCCTCACTGTACCCGAGGTTACATATTAATATCTCTGAAGATAAAACAGATTAATCCTGTTAAAGAAGTAGCGTTACCTCAAACTTCAATAACTTCAGCGAACTTAAGAACAGTAACAAGCCACACAGACTCAGTCGATCGACAATTTTGTTTATGAGAGCAAATGTATGCAGAGAGAAGGAAAAAATCTTCAGTATTCGAAAACTGGAAAATCCTCTTATTTATAGCCATTTTCAGCAAGGGACGCGTCTGTTCGAAAAAATATGTTAAGACCCGTTTTGTCCAGAGCGTTGTGTCGTTTGGGAAGAGTAACGACTTTTCGGAAAGAGTAACGACTTTCCGGAATGTTACCGTTACACGCGAATTAAAATCCCGTTATATTAAATTAATTTTGTTGATTAACTAATTAACTAACATCCTGAATTAATTTATAAGAGAAAGGAAATTAGGAAAAGAATTTAATTGATGAGATTGATGAAATAAATTTTGTCCAAAAATATGATCAATCACATCATTTGTCAAATCCGAAGTTGAGCGACGACGACGGCAGCGCGAGGGGCACCTTTTACTTGATTCAACTTAGAAACTGTTACCTGTTTGAACATTAATAAAGATATCATAGATTTTTGTTGGTATGGTATAGGAAAGAAGAAGTTGCAAAAATAACGATTGAGGCATAACTATAAGTTTTCATTTGAAAAAATTAGCAAGTAGTTTTACAAGGTGCACATTTTCTCTGTTTGGCTAATTTGTCGTTTTCTGTTAAGAATGACACAGGCACCTTCTCTTTGTGAAGATTCGTGAAGCAGTTCAGGAACCTTTCTTTTATAAATTTCTATATTAATTCAGTAATTTTACCCTAGTTTCGTGTCAATTTTGTCTTCCTTGTGACTCACATCACGAATTAGTTCGATCTGGTATTGTTTTTTCCTTTATGCTTGTTACAACGGTGATTTTTTTTCTTTGAGCTTCCTCCTTAAGTTTCTCTTTTAAATTTGTTTGTAAAGTTATTTCTGTCAATTTTAGTTATCTCATGGCTTCTTACCTGCCTGTGGTGATTGTTTAGAGAGGACTTATACTACACCAACAAAGTGGATGAGGGGCAAAGGACGTGTGACAATCCAATTTGGCTGTTGTTACAACTATGCACCAGTAAGCATTTTACAATCTTATCTTTCATCCCTCCTTCTCCACACAGAACTGAGTGCCTTAAATTATGTGTTATTATTAGGTGACAATTCTGTAACGAAGACCCCCCCCCCTCCCTCCAAAACCCAATCCCCAGCAGTTGACAACCTTCTTATATGATAGGGATGTGGCATATGGGTTAATCACAGATGGCATAATGACTAAACTTTCTTTATGGCAGGATAAGAATGGCAATCCCCCAGGGATCCTCAAAAGTGAAACTGTTGATCCATTGCCTGATCTTT</genome_strand>
        <mrna_strand>AATTCAATTCTTCAATTCACCGAGTTGACTCCTCCGCCATGTCCGACCACCAGAGAACTCGGAAGGACGATCCCTTCCTTCTCAATTACAACTCCGATGAACTCAGAATCGCCTCTGAATTTCTCTCCAATTGGCTCCCCTTTCTCTCCCGTGACCTCTGCCGCTCCTGCACCCACACCCTCTCCGACCGCATCCGATCCCTCAATTCTA......................................................................................................................................................................................................................................................................................................................AAGTTAGTGGTAATGCAGAATGCTTGAAGCAACCAAAGAATGTGAGTGTTTTGACTCCAGAACGTTGTGATTCGGATGGATGCAATGGGAGTCAAGAGAATTGTGACAACAATTCGCTTGGAAGTTGGAACGATTATGGTGACTTGAATGATAATGCAGATACAAACTCATTGGGGAGTTGGAAAGATGGGGCTGGTGGGGAGCCCTTTGAGGAGCTTTCTGTGGACAGAAATTCATCTGACGGTTGTATAGATGGCGCAGATTCACAATCTCAATCTGTTGGAGAGGCATCTACAAGTGAAGCATTCAAATCATCCTTACCTGTGACTACCCCGAAAGTGAAGATGTCATGGGCTGATATGGCTCAGGAGGATGAACTTCAAGCTGAGGAAGTGAGTGAGTCAATTGCCTTGAGAAGTCAGGTGAATGGTGTGGCTGAAGAGGAAATTACTAATCCGGAGAGTAAGCAAAAAACAGAATTGTCAAGGGAGAAACGAGAGTACATTAGATTCTGTAATGTGAAGAGGAAAAAGGATTTCATATGTTTGGAGAGGGTGAGGGGGAAAATTGTGAATATACTTGATGGATTGGAGCTACATAAGGGTGTCTTTAGCGCCGCTGAGCAAATTAGAATAGTTAAATATGCGGAGAAGCTTGACCAGATGGGGAAGAATGGGGAACTGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGACTTATACTACACCAACAAAGTGGATGAGGGGCAAAGGACGTGTGACAATCCAATTTGGCTGTTGTTACAACTATGCACCA.........................................................................................................................................................................................................................GATAAGAATGGCAATCCCCCAGGGATCCTCAAAAGTGAAACTGTTGATCCATTGCCTGATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602678" ref_strand="+" ref_description="SGN-U602678 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157354878|emb|CAO48224.1| (e_value=3e-43) unnamed; (*ATH) AT4G36090.2 (e_value=2e-42)  Symbol: None | expressed protein, similar to hypothetical protein [Arabidopsis thaliana] (TAIR:At1g48980.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP51882.1); contains InterPro domain 2OG-Fe(II) oxygenase superfami... ; ">
      <seq>gcattttaccacttattgacaatcatgattatgtgcggggatggggtactgtttcattggttaccgagtgcaacattgtgttcggatccaacttgaaaataatgggtcctggtgaatttgctggtgcgattgcaataccattgccagttggatctgtacttgtcttgaatggaaatggagctgatgtagctaaacactgtgtgccagctgtgcctactaataggatttcaatcacatttagaagaatggatgaatctaaaaggccaactggatatgttcccgagcatgatttacaagggttgcagcctttatcatatgaatcagactcgcaaaagaaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="41160" stop="42262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41453" g_stop="41603" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41604" i_stop="41676" i_length="73">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41677" g_stop="41748" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="223" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41749" i_stop="41843" i_length="95">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41844" g_stop="41962" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="342" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-U602678" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41453" e_stop="41603"/>
          <exon e_start="41677" e_stop="41748"/>
          <exon e_start="41844" e_stop="41962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATACCACCACATATTGACAATCATGATTTTGTGCGCCCATTTTGTACTGTTTCATTCCTTAGCGAGTGCAACATTGTGTTCGGATCCAACTTGAAAATAGTGGGTCCTGGTGAATTTGCTGGTGCGATTGCAATACCATTGCCAGTTGGGTAAGTGAGCGTATTCGTCTTATCATAACTTGTGAAATTAGGAAGATTGATCATTAATGACATTATATTGCAGATCTGTACTTGTCTTGAATGGAAATGGAGCTGATGTAGCTAAACACTGTGTGCCAGCTGTGCCTACTAAGAGGTACAAACTGAATGTTCAGAAGTCTCTAGTCATAGATAAATCTTCTGTTCCGCTGTGTAACATGCTAACGTCTTGTTAATCCTTATCTCACATAGGATTTCAATCACATTTAGAAGAATGGATGAATCTAAAAGGCCAACTGGATATGTTCCCGAGCATGATTTACAAGGGTTGCAGCCCTTATCATATGAATCAGACTCGCAAAAGAAATCAA</genome_strand>
        <mrna_strand>GCATTTTACCACTTATTGACAATCATGATTATGTGCGGGGATGGGGTACTGTTTCATTGGTTACCGAGTGCAACATTGTGTTCGGATCCAACTTGAAAATAATGGGTCCTGGTGAATTTGCTGGTGCGATTGCAATACCATTGCCAGTTGG.........................................................................ATCTGTACTTGTCTTGAATGGAAATGGAGCTGATGTAGCTAAACACTGTGTGCCAGCTGTGCCTACTAATAG...............................................................................................GATTTCAATCACATTTAGAAGAATGGATGAATCTAAAAGGCCAACTGGATATGTTCCCGAGCATGATTTACAAGGGTTGCAGCCTTTATCATATGAATCAGACTCGCAAAAGAAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591120" ref_strand="+" ref_description="SGN-U591120 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="44638" stop="45691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44938" g_stop="45397" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-U591120" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44938" e_stop="45397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTATAGATGATCAAATTTTTTCTTCGAATCCGAAATTAAATTACAATACACACACAGAAAAATAGTTTAAATTTTTAATTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATA-TTTTTTT-AAAAAAAATTAGAAGTAGTAAATATAAATTTAAAATTAATTTTTTAAAATCCGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATATGATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGG-TATATCAGCTCCAAATGACAAAGTTG-GGGGTATATCAGACCCTTTTCCCTTGATTTTTTCCT</genome_strand>
        <mrna_strand>CTTATTGTAGATGA-CCAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACA-AAAAAAATA-TTTGAATTTTT-TTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGG----TAT-ATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCC-T-ATTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589573" ref_strand="+" ref_description="SGN-U589573 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|61217026|sp|Q84VT7|WUS_SOLLC (e_value=2e-146) RecName:; (*ATH) AT2G17950.1 (e_value=3e-36) | Symbol: None | homeodomain transcription factor (WUSCHEL), 99.4% identical to WUSCHELL (GI:4090200) (Arabidopsis thaliana) | chr2:7815959-7817877 REVERSE | Aliases: T27K22.18, T27K22_18; (*SWP) sp|Q84VT7|WUS_SOLLC (e_value=1e-147) Protein WUSCHEL OS=Solanum lycopersicum GN=WUS; ">
      <seq>ggcttacatacatacatttgtagagttgttgttgttttatgatggaacatcaacacaacatagaagatggtggtaaaaatagtaacaacagtttcctgtgcaggcaaagtagtagccgttggacgccaacgagcgatcagataagaatattgaaggatctctactacaacaatggagttaggtctccaactgctgaacagattcagaggatatctgctaagttgagacagtacggtaagattgaaggcaaaaatgtgttttattggtttcagaaccataaagctcgtgaaagacaaaagaagaggctcattgctgccgcctctgccactgataataataatatctcttccatgcaaatgattccacatctttggagatctcctgatgatcaccacaagtacaacactgctactactaatccaggtgtccagtgtccatcaccatcttcacatggggtattaccagtggtacagactggaaactatggttatggaactttggctatggagaagagctttagggagtgttcaatatcaccaccaggtggtagttatcatcaaaatttgacatgggttggtgttgatccttacaacaatatgagtactacttctccagcaacttacccttttcttgaaaaaagcaacaacaaacactatgaagaaaccctagatgaagagcaagaagaagaaaattaccaaaggggtaactctgctttagaaactctgtcacttttccccatgcatgaagagaacatcatctcaaatttctgcatcaaacatcatgaatcttctggaggatggtaccattctgataataacaatttggctgctcttgaacttactctcaactctttcccctaaattatgaactagtctatcttatgtttgtagtaagtaagtactaatctaatttggtatgtgccaagctatttggaccttatggtaatgttaattaatcttaatctaagttgtactaatattattaattaaagtatggataagtttagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="+" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="47688" stop="49710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47986" g_stop="48408" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48409" i_stop="48513" i_length="105">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48514" g_stop="48611" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="521" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48612" i_stop="48926" i_length="315">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48927" g_stop="49412" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="1007" r_length="486" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="+" ref_id="SGN-U589573" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1007</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47986" e_stop="48408"/>
          <exon e_start="48514" e_stop="48611"/>
          <exon e_start="48927" e_stop="49412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATACATACATACATTTGTAGAGTTGTTGTTGTTTTATGATGGAACATCAACACAACATAGAAGATGGTGGTAAAAATAGTAACAACAGTTTCCTGTGCAGGCAAAGTAGTAGCCGTTGGACGCCAACGAGCGATCAGATAAGAATATTGAAGGATCTCTACTACAACAATGGAGTTAGGTCTCCAACTGCTGAACAGATTCAGAGGATATCTGCTAAGTTGAGACAGTACGGTAAGATTGAAGGCAAAAATGTGTTTTATTGGTTTCAGAACCATAAAGCTCGTGAAAGACAAAAGAAGAGGCTCATTGCTGCTGCCTCTGCCACTGATAATAATAATATCTCTTCCATGCAAATGATTCCACATCTTTGGAGATCTCCTGATGATCACCACAAGTACAACACTACTACTACTAATCCAGGTAATTCTTTCTACTTTTTAGTATTGTCTTGGTTAAAATAAAGCGGACTACCTGCTGCTATAACATGTTAAAATACATTAATAGTTTACGATTATATATATACAGGTGTTCAGTGTCCATCACCATCTTCACATGGGGTATTACCAGTGGTACAGACTGGAAACTATGGTTATGGAACTTTGGCTATGGAGAAGAGCTTTAGGGTAAGTTTTGGCCTAATAAAACAACACCAATCTTAGAGTTAAATACTCTATGTTGCTTGTGTTTTTTTTTCCAACTAAGTACACATGAAATGAAGAAGAAAAAAAAAGAAGAGGATATATATATATAGTCCTATTATCAAAACAACATTTTCTTCACCATAAAAATATGAGAACAACTACTCAACTTGTCATATGTCAAATTTTCCTTTATTCTATACATATAGTATATAAGATTTGAACTAGAAAAAAAAGAAAATAAGATTTTTGAAATTGAACCCTAATTTTGCAATTGTTGTTGATGAATGGTTGAAACAGGAGTGTTCAATATCACCACCAGGTGGTAGTTATCATCAAAATTTGACATGGGTTGGTGTTGATCCTTACAACAATATGAGTACTACTTCTCCAGCAACTTACCCTTTTCTTGAAAAAAGCAACAACAAACACTATGAAGAAACCCTAGATGAAGAGCAAGAAGAAGAAAATTACCAAAGGGGTAACTCTGCTTTAGAAACTCTGTCACTTTTCCCCATGCATGAAGAGAACATCATCTCAAATTTCTGCATCAAACATCATGAATCTTCTGGAGGATGGTACCATTCTGATAATAACAATTTGGCTGCTCTTGAACTTACTCTCAACTCTTTCCCCTAAATTATGAACTAGTCTATCTTATGTTTGTAGTAAGTAAGTACTAATCTAATTTGGTATGTGCCAAGCTATTTGGACCTTATGGTAATGTTAATTAATCTTAATCTAAGTTGTACTAATATTATTAATTAAAGTATGGATAAGTTTATT</genome_strand>
        <mrna_strand>GGCTTACATACATACATTTGTAGAGTTGTTGTTGTTTTATGATGGAACATCAACACAACATAGAAGATGGTGGTAAAAATAGTAACAACAGTTTCCTGTGCAGGCAAAGTAGTAGCCGTTGGACGCCAACGAGCGATCAGATAAGAATATTGAAGGATCTCTACTACAACAATGGAGTTAGGTCTCCAACTGCTGAACAGATTCAGAGGATATCTGCTAAGTTGAGACAGTACGGTAAGATTGAAGGCAAAAATGTGTTTTATTGGTTTCAGAACCATAAAGCTCGTGAAAGACAAAAGAAGAGGCTCATTGCTGCCGCCTCTGCCACTGATAATAATAATATCTCTTCCATGCAAATGATTCCACATCTTTGGAGATCTCCTGATGATCACCACAAGTACAACACTGCTACTACTAATCCAG.........................................................................................................GTGTCCAGTGTCCATCACCATCTTCACATGGGGTATTACCAGTGGTACAGACTGGAAACTATGGTTATGGAACTTTGGCTATGGAGAAGAGCTTTAGG...........................................................................................................................................................................................................................................................................................................................GAGTGTTCAATATCACCACCAGGTGGTAGTTATCATCAAAATTTGACATGGGTTGGTGTTGATCCTTACAACAATATGAGTACTACTTCTCCAGCAACTTACCCTTTTCTTGAAAAAAGCAACAACAAACACTATGAAGAAACCCTAGATGAAGAGCAAGAAGAAGAAAATTACCAAAGGGGTAACTCTGCTTTAGAAACTCTGTCACTTTTCCCCATGCATGAAGAGAACATCATCTCAAATTTCTGCATCAAACATCATGAATCTTCTGGAGGATGGTACCATTCTGATAATAACAATTTGGCTGCTCTTGAACTTACTCTCAACTCTTTCCCCTAAATTATGAACTAGTCTATCTTATGTTTGTAGTAAGTAAGTACTAATCTAATTTGGTATGTGCCAAGCTATTTGGACCTTATGGTAATGTTAATTAATCTTAATCTAAGTTGTACTAATATTATTAATTAAAGTATGGATAAGTTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585584" ref_strand="+" ref_description="SGN-U585584 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147857700|emb|CAN80813.1| (e_value=1e-106) hypothetical; (*ATH) AT5G66240.2 (e_value=2e-103)  Symbol: None | transducin family protein / WD-40 repeat family protein, contains Pfam PF00400: WD domain, G-beta repeat (4 copies, 1 weak); similar to Will die slowly protein. {Drosophila melanogaster} (SP:Q9V3J8) {Drosophila melanogaster} | chr5:26... ; (*SWP) sp|Q58E77|WD82B_XENLA (e_value=8e-50) WD repeat-containing protein 82-B OS=Xenopus laevis GN=wdr82-B; ">
      <seq>gctcgagttctcagttgtaaacttccgtcgccgccggtgaaatacaatacaaaagaatctgcaacttgcttgttatcgaagaacaccatggcaggtggaccaactgacagagaagacaaggtctcacttgagaccactgaagaaattctacagagcatggaagtcggcatgacatttcgcgactatagtggtagaatcagttcaatggatttccataagacatcaaattttatggtgacagccagtgatgatgagtccatacgtctatatgatgttgcaaatgcaacgtgtttgaaaactattaatagcaaaaagtacggggtcgatctggttagcttcacttctcatccaacgactgtaatatactcctccaagaatggttgggatgaatctctacgacttctttcattgcatgacaacaagtacttgcggtatttcaagggtcatcgtgacagggtcgtctctcttagcttatgctatagaaaggagtattttatctctggctcacttgatcgaactgttctactttgggatcaaagggctgagaaatgccagggccttcttcgagtgcaaggaagaccagctactgcttatgatgagcaaggccttgtatttgctattgcttttggaggatatataaggatgtttgatgcacgctatttcgacaagggaccttttgaaattttctctgttggtggagatgtgtctgangctaacagcgttaagttcagtaacgatgggngacttgtgcttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="61317" stop="57576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61017" g_stop="60924" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60923" i_stop="60836" i_length="88">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60835" g_stop="60744" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="186" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60743" i_stop="59806" i_length="938">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59805" g_stop="59705" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="287" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59704" i_stop="58709" i_length="996">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58708" g_stop="58608" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="388" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58607" i_stop="58515" i_length="93">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.679" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58514" g_stop="58448" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="455" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58447" i_stop="58365" i_length="83">
            <donor d_prob="0.425" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58364" g_stop="58265" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="555" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58264" i_stop="58183" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58182" g_stop="58069" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="669" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="58068" i_stop="57964" i_length="105">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="57963" g_stop="57876" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="757" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-U585584" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61017" e_stop="60924"/>
          <exon e_start="60835" e_stop="60744"/>
          <exon e_start="59805" e_stop="59705"/>
          <exon e_start="58708" e_stop="58608"/>
          <exon e_start="58514" e_stop="58448"/>
          <exon e_start="58364" e_stop="58265"/>
          <exon e_start="58182" e_stop="58069"/>
          <exon e_start="57963" e_stop="57876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCGAGTTCTCAGTTGTAAACTTCCGTCGCCGCCGGTGAAATACAATACAAAAGAATCTGCAACTTGCTTGTTATCGAAGAACACCATGGCAGGTACAGTAGAAATTATGAAGTAAATTGAATTATCTTTGTGTTACTTGATTATTTTCTGTTGCTTCTTGACGATTTCAGTTTTTCTCAGGTGGACCAACTGACAGAGAAGACAAGGTCTCACTTGAGACCACTGAAGAAATTCTACAGAGCATGGAAGTCGGCATGACATTTCGCGACTATGTAAGTTTGGTAATTTGGATAGCTCTTTCGTTTAAGAATTCATAAGCTACAGGAAACCGATTTTAAAAGCCGTAAAATTTGTCCTCGTTTTTTTGTCCCTTCCTTAGTATATTGTTCACACTGGCGCTGTTGATTACTTCAAGGGAAATATTAGGTTCAGAAGGAACAGTGGTGTAATTGATCGCAGTATGTGTTATCAGACTGCCAAATCTAATTGAACAACCCTAGCAGAAGTGCCGCTTGATCTTTTAATGGGGAAAATCTTGTTTTTTTAAGCTAATTTTAGCTTTATTGGTTTAATACAGTTGCGTTATCATCATTTATGATTTCAATGATAGCTAATACTTAAGAGAAATATACACCTTCTTTTAATTTAAAGTTTTGCATTTGTGTTGGTTAAGGTTGTCGGAGAAACGAAACAAACACTTCTATTACTCGTTCCATTTCATGAAAAGAGGAATATACATAGGCATGCATAAGGGATGCACAATGTTTGCTTCTATTTGACAAGAGTAGTAAGACTCTTTCAATTATTGTATTGAGGGTCGTTGTGTTCATGCAACGATTATAATATAGTAGTAAATTAGAGTTGTATTAGTAATACAAAGTTCTATACGTAAAAGCAATCATTGTACTGGTAATATAGAATTAAACGGGTGGTTATTTTTTCCTTATACAACAAATAGAATGAGCTCTAAAAGAACTTTGTAGTTGTATGATCTTTTTTTTTTTTTGAGACGCAACAATATGATCATTATCTGTTAATTAATGTATATTCTTGTCAACACCTTGTGTCTAAAAAGGTTGAGTAACGGTATTATAGACCAACTATTAAGAGCTATGCTGTGATCCTTTCTAAAACAGCTGTTGTTCTTCTTCACTAAAGTGTGTAGGCTGTGTAAGCATTTAATATTGACATAGATTTTCTCTACATGCAGAGTGGTAGAATCAGTTCAATGGATTTCCATAAGACATCAAATTTTATGGTGACAGCCAGTGATGATGAGTCCATACGTCTATATGATGTTGCAAATGCAACGTAAGCATCTTTACTTTTACTTTATTGGCAGCAAATTTAATTAAACGATTCATACTTTCTTTATTGTTGTTTCTTGGTACTTTTAGCAGGCAGTGCTACATTTCTGTTAACCTCTGTATAACTGATAAATTAGGAAAGTTAAAACTTTGTTCTTCCAAGAGCGCAACTTACAGTATATTCTTATATTCTTTCCCAGCTCAAAAAGAGCAGTGTTTAATAAAACGGCGTATTGGTTGTCAAATAATGATGTGCTGCTGCACCCATTAACCATTTAAATTCCTTTCACAGCTATTAATTATTTCCATTTGGGGCGTGAAGTAATCCTCTTTACACTTATGATGCACTAAATTAGCAAGTACTCAAAAAGACTCTCAAGCAGGTTGGCTTCTCAAAACCACACTTTGCCCTGTAATCATCTCCTCACTTATCAGTGTCCTACTTTAGATGATCATTTGTTGAGAAGCGCAAAATAATTTAAAACAGAAGCTTGAGATCATCTGCTGAGGTGGGTTTGAGGGCTAGCTCACTTGGTGGGCTCCCTGCCTTCCACCGTTGAGGTTTCCAAGCCCCATTACTAGCGTAGCATCCCTCTCCCTGATGTAATCAAAATAAAAAGGAAAGGCACGTATGAAAAAAAAAGAAGGTCATTGCTGTATATCTGCTTCTTTACAATCAAGCCTTACAAAGTGAATTTTGAACCAGAATTTGTTATTGGACTCAAATATGAGCTAAGATCCTTATGGCCTTCTCATTCATCATGTTTGGCCTCATAAAATAACTCTACATTTTATCATTATTAACAAGGTGGCTCCCTATAGAAGCATCTTTTCTTCAGAAAGAGCTTCTATTAGAAAAACTTGGGGAAAATGCTCTTATTCTGTCTCTTCTCCTTCCGTGTTTTTTTTTTCATTTTTGTTTCTTCTTTTCATTAAATGTTATCTTGATGCCTTCTTCTCATGTTGTTGGGGATGCTATGTAATATATCCATCATTGCAGGTGTTTGAAAACTATTAATAGCAAAAAGTACGGGGTCGATCTGGTTAGCTTCACTTCTCATCCAACGACTGTAATATACTCCTCCAAGAATGGTTGGGATGGTATGCACCTTATTCTAAGATGATAAATTCCGGTGTATAATCTTTGAAAAGCAGAACAAGTGAATTACTAATTTGTCTGATGGACTGTTTCAGAATCTCTACGACTTCTTTCATTGCATGACAACAAGTACTTGCGGTATTTCAAGGGTCATCGTGACAGGCACACTTCTAAGCAGTACCAACTTTGTCAGACTTCCATTGAATATCAATCCTCAGTACTAAGTCTGTATTTGTCATTTGCAGGGTCGTCTCTCTTAGCTTATGCTATAGAAAGGAGTATTTTATCTCTGGCTCACTTGATCGAACTGTTCTACTTTGGGATCAAAGGGCTGAGAAATGCCAGGTAAAGTCCTCATTGACATTATTTGTTCTTATCAAATGTTTTCTTCATATATCTGATTAATTGATAAGTTTTCTGTTCTTAGGGCCTTCTTCGAGTGCAAGGAAGACCAGCTACTGCTTATGATGAGCAAGGCCTTGTATTTGCTATTGCTTTTGGAGGATATATAAGGATGTTTGATGCACGCTATTTCGACAAGGTTTTGCATTTGATACATGAAAATGAATTACTTAATTGACATGCGTAATATTTGTCATTTGCATCTTTAGCTTTCATTAATTTGTCGAAAGTTAACTCTTTGAAGGGACCTTTTGAAATTTTCTCTGTTGGTGGAGATGTGTCTGATGCTAACAGCGTTAAGTTCAGTAACGATGGGAGACTTGTGCTTTTGA</genome_strand>
        <mrna_strand>GCTCGAGTTCTCAGTTGTAAACTTCCGTCGCCGCCGGTGAAATACAATACAAAAGAATCTGCAACTTGCTTGTTATCGAAGAACACCATGGCAG........................................................................................GTGGACCAACTGACAGAGAAGACAAGGTCTCACTTGAGACCACTGAAGAAATTCTACAGAGCATGGAAGTCGGCATGACATTTCGCGACTAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTAGAATCAGTTCAATGGATTTCCATAAGACATCAAATTTTATGGTGACAGCCAGTGATGATGAGTCCATACGTCTATATGATGTTGCAAATGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGAAAACTATTAATAGCAAAAAGTACGGGGTCGATCTGGTTAGCTTCACTTCTCATCCAACGACTGTAATATACTCCTCCAAGAATGGTTGGGATG.............................................................................................AATCTCTACGACTTCTTTCATTGCATGACAACAAGTACTTGCGGTATTTCAAGGGTCATCGTGACAG...................................................................................GGTCGTCTCTCTTAGCTTATGCTATAGAAAGGAGTATTTTATCTCTGGCTCACTTGATCGAACTGTTCTACTTTGGGATCAAAGGGCTGAGAAATGCCAG..................................................................................GGCCTTCTTCGAGTGCAAGGAAGACCAGCTACTGCTTATGATGAGCAAGGCCTTGTATTTGCTATTGCTTTTGGAGGATATATAAGGATGTTTGATGCACGCTATTTCGACAAG.........................................................................................................GGACCTTTTGAAATTTTCTCTGTTGGTGGAGATGTGTCTGANGCTAACAGCGTTAAGTTCAGTAACGATGGGNGACTTGTGCTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601488" ref_strand="+" ref_description="SGN-U601488 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cgaattgagtggagttttacttttagtctcttttttatcacaacactctgaattagtgataattggaaaatggaaggggaagaaggcgtattaatgcgggggcgggtagagattgatatgcgtcagccttttcagtctgtgaaggaagcagttatgttgtttggggaaaaggttttagccggagaaattcatgctaagcaacttcaacaaataaatcatgagatttgtactgatgaacataacaagtgaaggtaacttaatggtgcacaaatgacggtgcctataacttagactgataagttatatgtgtatctctatatactatgaaacttattatgatgttcaacgtcaatggcggacctatgtagtgacttatgggtgcttaagcacccagtgccttttgtgacaacatcattatttctgtacataatttaataattcactgaaatatatatcaattgagcaccccattatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0057H03-O0tca/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0057H03.1" temp_strand="-" temp_description="C02SLm0057H03.1  AC215481.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0057H03 sequenced_by:kribb upload_account_name:korea">
        <position start="69921" stop="68697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69628" g_stop="69419" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69418" i_stop="69265" i_length="154">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.552" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69264" g_stop="68997" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="478" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0057H03.1" gen_strand="-" ref_id="SGN-U601488" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0057H03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U601488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69628" e_stop="69419"/>
          <exon e_start="69264" e_stop="68997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTCAAGTGGAGTTTTAATTTTAGTCTCTTTTTTATCACAACACTCTGAATTAGTGATAATTGGAAAATGGAAGGGGAAGAAGGCGTAGTAGTGCGGGGGCGGGTAGAGATTGATATGCGTCAGCCTTTTCAGTCTGTGAAGGAAGCAGTTATGTTGTTTGGGGAAAAGGTTTTAGCCGGAGAAATTCATGCTAAGCAACTTCAACAGGTTTTTTTTTTCCTTCTTTAATTTACTTTATAATTTGGTCAGAGTTTGAGTCTATATGCTTCCACAATAAAACATGCAAATATGATTTTAAACTGTATATAAATAATTGTTTCTTTTTTATAATTCTATTAAGTCACTTAAAAGATATTTACAGATAAATCATGAGATTTGTACTGATGAACATAACAAGTGAAGGTAACTTAATGGTGCACAAATGACGGTGCCTATAACTTAGACTGATAAGTTATATGTGTATCTCTATATACTATGAAACTTATTATGATGTTCAACGTCAATGGCGGACCTATGTAGTGACTTATGGGTGCTTAAGCACCCAGTGCCTTTTGTGACAACATCATTATTTCTGTACATAATTTAATAATTCACTGAAATATATATCAATTGAGCACCCCATTATATGT</genome_strand>
        <mrna_strand>CGAATTGAGTGGAGTTTTACTTTTAGTCTCTTTTTTATCACAACACTCTGAATTAGTGATAATTGGAAAATGGAAGGGGAAGAAGGCGTATTAATGCGGGGGCGGGTAGAGATTGATATGCGTCAGCCTTTTCAGTCTGTGAAGGAAGCAGTTATGTTGTTTGGGGAAAAGGTTTTAGCCGGAGAAATTCATGCTAAGCAACTTCAACAA..........................................................................................................................................................ATAAATCATGAGATTTGTACTGATGAACATAACAAGTGAAGGTAACTTAATGGTGCACAAATGACGGTGCCTATAACTTAGACTGATAAGTTATATGTGTATCTCTATATACTATGAAACTTATTATGATGTTCAACGTCAATGGCGGACCTATGTAGTGACTTATGGGTGCTTAAGCACCCAGTGCCTTTTGTGACAACATCATTATTTCTGTACATAATTTAATAATTCACTGAAATATATATCAATTGAGCACCCCATTATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>13</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2474" PGL_stop="6788"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2474" e_stop="2732"/>
            <exon e_start="5657" e_stop="5709"/>
            <exon e_start="5782" e_stop="5848"/>
            <exon e_start="5922" e_stop="5978"/>
            <exon e_start="6463" e_stop="6788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2474" e_stop="2732" e_length="259"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2733" i_stop="5656" i_length="2924"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5657" e_stop="5709" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="5710" i_stop="5781" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5782" e_stop="5848" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.998">
            <gDNA_intron_boundary i_start="5849" i_stop="5921" i_length="73"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5922" e_stop="5978" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5979" i_stop="6462" i_length="484"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6463" e_stop="6788" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2474" stop="2732"/>
              <exon start="5657" stop="5709"/>
              <exon start="5782" stop="5848"/>
              <exon start="5922" stop="5978"/>
              <exon start="6463" stop="6788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595894" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2492" stop="2732"/>
              <exon start="5657" stop="5709"/>
              <exon start="5782" stop="5848"/>
              <exon start="5922" stop="5978"/>
              <exon start="6463" stop="6772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5955" stop="5978"/>
              <exon start="6463" stop="6723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595892" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTAGACTCTGTCACAGTAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA : GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG : GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG : GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA : GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTCACCCTGGGTGCCCCAA</gDNA_template>
            <first_frame> V  *  T  L  S  Q  *  K  K  L  H  S  P  L  V  T  N  Q  Q  R  *  V  Y  *  E  V  R  K  A  G  G  I  S  H  E  S  E  L  G  H  T  G  E  A  S  T  *  S  D  R  A  Y  S  D  S  R  D  E  E  W  R  A  V  Q  R  K  Y  G  G  V  R  G  *  L  E  L  P  T  R  E  H  H  L  H  C  Q   : R  W  E  S  V  A  T  R  A  C  F  H  S  R  Q  Q  S  Q  :  V  H  D  N  S  *  Y  A  *  E  C  S  H  V  Q  A  A  R  S  K  N  Q   : G  K  R  Y  I  T  W  C  W  S  G  T  C  Y  C  Y  A  S  *   : S  S  G  C  W  S  W  S  T  T  W  S  G  Y  C  A  T  C  K  K  M  I  A  *  C  R  I  L  F  Y  L  V  *  Q  S  *  K  F  S  V  R  M  L  E  *  I  S  K  V  G  S  L  V  *  *  S  E  L  H  S  S  T  L  *  L  N  L  F  H  I  R  L  E  N  A  G  I  *  V  L  F  K  L  P  L  C  L  Y  F  T  C  V  K  K  Y  G  L  V  Q  F  F  T  F  S  P  W  V  P  Q </first_frame>
            <second_frame>  F  R  L  C  H  S  R  R  S  C  T  P  H  W  S  L  T  S  N  V  R  F  T  E  K  *  G  K  R  E  E  S  A  M  S  R  S  L  G  I  P  V  K  L  L  H  E  A  T  G  H  I  V  T  V  E  M  K  S  G  E  L  Y  R  G  S  M  V  E  C  E  D  N  W  N  C  Q  L  E  S  I  T  Y  T  A  K  :  D  G  R  V  S  Q  L  E  H  V  F  I  R  G  S  K  V  R :   F  M  I  I  P  D  M  L  K  N  A  P  M  F  K  R  L  E  A  R  I  K  :  G  K  G  T  S  L  G  V  G  R  G  R  A  I  A  M  R  A  K  :  A  Q  A  A  G  R  G  A  P  P  G  R  G  T  V  P  P  V  R  R  *  L  L  D  A  G  F  Y  F  I  W  F  S  N  R  K  N  S  V  *  E  C  W  S  R  F  L  R  L  V  P  W  S  N  S  L  S  Y  I  H  L  L  C  N  L  T  F  F  T  Y  D  *  R  M  L  E  Y  E  C  F  S  S  C  L  C  A  C  T  S  P  V  L  R  N  M  D  *  S  S  S  S  L  F  H  P  G  C  P   </second_frame>
            <third_frame>   L  D  S  V  T  V  E  E  A  A  L  P  T  G  H  *  P  A  T  L  G  L  L  R  S  K  E  S  G  R  N  Q  P  *  V  G  A  W  A  Y  R  *  S  F  Y  M  K  R  Q  G  I  *  *  Q  *  R  *  R  V  E  S  C  T  E  E  V  W  W  S  A  R  I  T  G  I  A  N  S  R  A  S  L  T  L  P  K :   M  G  E  C  R  N  *  S  M  F  S  F  E  A  A  K  S   : G  S  *  *  F  L  I  C  L  R  M  L  P  C  S  S  G  *  K  Q  E  S  R :   E  K  V  H  H  L  V  L  V  G  D  V  L  L  L  C  E  L  K :   L  R  L  L  V  V  E  H  H  L  V  G  V  L  C  H  L  *  E  D  D  C  L  M  Q  D  F  I  L  S  G  L  A  I  V  K  I  Q  C  K  N  V  G  V  D  F  *  G  W  F  L  G  L  I  V  *  V  T  F  I  Y  F  V  T  *  P  F  S  H  T  T  R  E  C  W  N  M  S  A  F  Q  V  A  S  V  L  V  L  H  L  C  *  E  I  W  I  S  P  V  L  H  F  F  T  L  G  A  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0057H03.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2553" stop="2732"/>
                    <exon start="5657" stop="5709"/>
                    <exon start="5782" stop="5848"/>
                    <exon start="5922" stop="5978"/>
                    <exon start="6463" stop="6525"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKREESAMSRSLGIPVKLLHEATGHIVTVEMKSGELYRGSMVECEDNWNCQLESITYTAKDGRVSQLEHVFIRGSKVRFMIIPDMLKNAPMFKRLEARIKGKGTSLGVGRGRAIAMRAKAQAAGRGAPPGRGTVPPVRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="11953" PGL_stop="11575"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11953" e_stop="11575"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="11953" e_stop="11575" e_length="379"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11953" stop="11575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATATTAATAATTTCTCTTTCTAAAACAACAACAAAATGGGTTTAAAGAAAACAAGTAGCAGCAAACAACAAACAGCAGCTTTGAAACAAATGATCAAAAGATGTTCTAGTTTTGGAAAAAATGAGAATAATGGTTTCCCACATGATGTTCCAAAAGGACATTTTGTTGTGTACGTTGGAGAAAATAGAAGTAGATATATAATACCTATTTCTTGGTTAACATATCCTCAATTTCAAAATTTGCTTCAAAGAGCTGAAGAAGAATTTGGATTTAGTCATGATATGGGCATTACTATTCCTTGTCATGAACATGATTTTTGTTCACTTATTTCAATGTTTAGATGAAACAACAAAATATAATCTTCCTTTTTCCTTTT</gDNA_template>
            <first_frame> K  I  L  I  I  S  L  S  K  T  T  T  K  W  V  *  R  K  Q  V  A  A  N  N  K  Q  Q  L  *  N  K  *  S  K  D  V  L  V  L  E  K  M  R  I  M  V  S  H  M  M  F  Q  K  D  I  L  L  C  T  L  E  K  I  E  V  D  I  *  Y  L  F  L  G  *  H  I  L  N  F  K  I  C  F  K  E  L  K  K  N  L  D  L  V  M  I  W  A  L  L  F  L  V  M  N  M  I  F  V  H  L  F  Q  C  L  D  E  T  T  K  Y  N  L  P  F  S  F  </first_frame>
            <second_frame>  K  Y  *  *  F  L  F  L  K  Q  Q  Q  N  G  F  K  E  N  K  *  Q  Q  T  T  N  S  S  F  E  T  N  D  Q  K  M  F  *  F  W  K  K  *  E  *  W  F  P  T  *  C  S  K  R  T  F  C  C  V  R  W  R  K  *  K  *  I  Y  N  T  Y  F  L  V  N  I  S  S  I  S  K  F  A  S  K  S  *  R  R  I  W  I  *  S  *  Y  G  H  Y  Y  S  L  S  *  T  *  F  L  F  T  Y  F  N  V  *  M  K  Q  Q  N  I  I  F  L  F  P  F </second_frame>
            <third_frame>   N  I  N  N  F  S  F  *  N  N  N  K  M  G  L  K  K  T  S  S  S  K  Q  Q  T  A  A  L  K  Q  M  I  K  R  C  S  S  F  G  K  N  E  N  N  G  F  P  H  D  V  P  K  G  H  F  V  V  Y  V  G  E  N  R  S  R  Y  I  I  P  I  S  W  L  T  Y  P  Q  F  Q  N  L  L  Q  R  A  E  E  E  F  G  F  S  H  D  M  G  I  T  I  P  C  H  E  H  D  F  C  S  L  I  S  M  F  R  *  N  N  K  I  *  S  S  F  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0057H03.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11927" stop="11607"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNNKMGLKKTSSSKQQTAALKQMIKRCSSFGKNENNGFPHDVPKGHFVVYVGENRSRYIIPISWLTYPQFQNLLQRAEEEFGFSHDMGITIPCHEHDFCSLISMFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="24469" PGL_stop="23186"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24469" e_stop="24152"/>
            <exon e_start="23725" e_stop="23637"/>
            <exon e_start="23543" e_stop="23322"/>
            <exon e_start="23234" e_stop="23186"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24469" e_stop="24152" e_length="318"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.964">
            <gDNA_intron_boundary i_start="24151" i_stop="23726" i_length="426"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23725" e_stop="23637" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.961" acc_prob="0.899">
            <gDNA_intron_boundary i_start="23636" i_stop="23544" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23543" e_stop="23322" e_length="222"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23321" i_stop="23235" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23234" e_stop="23186" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24469" stop="24152"/>
              <exon start="23725" stop="23637"/>
              <exon start="23543" stop="23322"/>
              <exon start="23234" stop="23186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571313" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGGCGGGTTAGTTTGGAGGGAGGCGAAAAACCAGAATTGGAACATTCTTTGTTCCATGCAAATACTCTCTCTACTTAATACCCAAAACCCACCATGCCTTTCTAATTCCTACCAAACTCATCAGATTTCCCCTTTTCACTCTTCAATTTCAAAACCCTAATTTCCAATTTCTTCACAATTTCCATAACTAGGTTCGTTTTTGCATGTAAAATGCCTCTAAACTCGCCGAATGACAGTGAACATGGTGGAAATGAGTCTGATCCAAGGCTACATCTCACCAAAATTGCAAACCCTTCCGAAGATTTTGAAAAAAAG : ACTTCAAGCAAGAGGCTGAAAGATGTTGAAATTTATGTCCCAATAGTCTTTGGAACAATTGCATTTTGGCTAGGCAAGAAAGCCACTGA : AACTCAGTCACATAGGTGGTCAGTATATGTTCGTGGGGCAACAAATGAGGATCTTAGTGGAGTTATCAAGAAGGTTGTTTTTCAATTGCATCCAAGCTTTAACAATCCTGTTAGAGTGGTAGAATCTCCACCCTTTGAGTTGTCAGAATGTGGTTGGGGCGAATTTGAAATTGCAATATCCCTTCTCTTCCACGATGACGTTGGTGAAAAGAAGTTGGATTT : GTATCATCATTTGAAGTTATACGCAGAGAATGAGCCTGGCCCCCAGTCG</gDNA_template>
            <first_frame> F  W  R  V  S  L  E  G  G  E  K  P  E  L  E  H  S  L  F  H  A  N  T  L  S  T  *  Y  P  K  P  T  M  P  F  *  F  L  P  N  S  S  D  F  P  F  S  L  F  N  F  K  T  L  I  S  N  F  F  T  I  S  I  T  R  F  V  F  A  C  K  M  P  L  N  S  P  N  D  S  E  H  G  G  N  E  S  D  P  R  L  H  L  T  K  I  A  N  P  S  E  D  F  E  K  K  :  T  S  S  K  R  L  K  D  V  E  I  Y  V  P  I  V  F  G  T  I  A  F  W  L  G  K  K  A  T  E :   T  Q  S  H  R  W  S  V  Y  V  R  G  A  T  N  E  D  L  S  G  V  I  K  K  V  V  F  Q  L  H  P  S  F  N  N  P  V  R  V  V  E  S  P  P  F  E  L  S  E  C  G  W  G  E  F  E  I  A  I  S  L  L  F  H  D  D  V  G  E  K  K  L  D  L :   Y  H  H  L  K  L  Y  A  E  N  E  P  G  P  Q  S </first_frame>
            <second_frame>  F  G  G  L  V  W  R  E  A  K  N  Q  N  W  N  I  L  C  S  M  Q  I  L  S  L  L  N  T  Q  N  P  P  C  L  S  N  S  Y  Q  T  H  Q  I  S  P  F  H  S  S  I  S  K  P  *  F  P  I  S  S  Q  F  P  *  L  G  S  F  L  H  V  K  C  L  *  T  R  R  M  T  V  N  M  V  E  M  S  L  I  Q  G  Y  I  S  P  K  L  Q  T  L  P  K  I  L  K  K  R :   L  Q  A  R  G  *  K  M  L  K  F  M  S  Q  *  S  L  E  Q  L  H  F  G  *  A  R  K  P  L   : K  L  S  H  I  G  G  Q  Y  M  F  V  G  Q  Q  M  R  I  L  V  E  L  S  R  R  L  F  F  N  C  I  Q  A  L  T  I  L  L  E  W  *  N  L  H  P  L  S  C  Q  N  V  V  G  A  N  L  K  L  Q  Y  P  F  S  S  T  M  T  L  V  K  R  S  W  I   : C  I  I  I  *  S  Y  T  Q  R  M  S  L  A  P  S   </second_frame>
            <third_frame>   L  A  G  *  F  G  G  R  R  K  T  R  I  G  T  F  F  V  P  C  K  Y  S  L  Y  L  I  P  K  T  H  H  A  F  L  I  P  T  K  L  I  R  F  P  L  F  T  L  Q  F  Q  N  P  N  F  Q  F  L  H  N  F  H  N  *  V  R  F  C  M  *  N  A  S  K  L  A  E  *  Q  *  T  W  W  K  *  V  *  S  K  A  T  S  H  Q  N  C  K  P  F  R  R  F  *  K  K   : D  F  K  Q  E  A  E  R  C  *  N  L  C  P  N  S  L  W  N  N  C  I  L  A  R  Q  E  S  H  *  :  N  S  V  T  *  V  V  S  I  C  S  W  G  N  K  *  G  S  *  W  S  Y  Q  E  G  C  F  S  I  A  S  K  L  *  Q  S  C  *  S  G  R  I  S  T  L  *  V  V  R  M  W  L  G  R  I  *  N  C  N  I  P  S  L  P  R  *  R  W  *  K  E  V  G  F  :  V  S  S  F  E  V  I  R  R  E  *  A  W  P  P  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0057H03.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24361" stop="24152"/>
                    <exon start="23725" stop="23637"/>
                    <exon start="23543" stop="23322"/>
                    <exon start="23234" stop="23186"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLPNSSDFPFSLFNFKTLISNFFTISITRFVFACKMPLNSPNDSEHGGNESDPRLHLTKIANPSEDFEKKTSSKRLKDVEIYVPIVFGTIAFWLGKKATETQSHRWSVYVRGATNEDLSGVIKKVVFQLHPSFNNPVRVVESPPFELSECGWGEFEIAISLLFHDDVGEKKLDLYHHLKLYAENEPGPQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="29085" PGL_stop="25444"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29085" e_stop="27743"/>
            <exon e_start="25798" e_stop="25444"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="0.999"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="29085" e_stop="27743" e_length="1343"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="27742" i_stop="25799" i_length="1944"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="25798" e_stop="25444" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29085" stop="27743"/>
              <exon start="25798" stop="25444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576696" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTGATGTCTAAACTTCCTGCCAGTTTGTTTTGTACTTTTCTAGCCTTGGGAAAGCACAGTTCGCCATGAATTTGTATGACTTTATAATGTTCTTAATAAACTTTTATCTGGAAATGCTGTCTTTGTGGTGTATTGTGAATGAAATTAGACTAATTCCTGGGGCATTGCAAAGAACATGGTGATGGATTTATTATTCTTTATCCAATGTCATGGGAATTCCTCAACAAGTTTTAAACGAGTGCAGCTTAACCTTTTTTAATCTGAATATTGTGCTTGAATGAAATCACTGTAGAAGAATTTTTATACGATGGGCCTTTTTTACCCGAAGGTTGAGAACTGCAGTGTGGTTGTTAGAGTTAAAGTTTTGATATGATTCCCATGTGGTCCATATTAACTGTCTTCTACTAGTTACTAAAACCCAATGTTCCTAAAACATTTAATTTTTTAGGTTCCTGAACTCACATCAGTGACTTGATAAGGTGATGGCGGGGGAGGGAAATATTGATCTCTCAGCTTTAAAATCCCAATTGACTCAAACTGACGTTACTTGGAAGCTAGAGATGGAGAAAAGCCAGTCCCAAGTGGATGCTTTACAAGCAAAACTGTTGGAGGTAAAAGCTTCTATTCAGGGATCAGAAGAAGATACAAAGAAGGAGTTAGATGTTCTATGGCATAGAGTAAGAACTGCTACAACATTGATGACGTACTTGAAAGCTAAAGCCAGAGTCGTGGCTGTTCCAGATTTGGCCCATTCCTCATGCGGCATCAAAGAACTAGATGGAGTGGGTATTGTTGATAAAAATGGTATACCATTATCCAGTTGGACTAGGGATGTTGATCTCTCATCTTTTAATGATGCTGATGATGAATTATGGATTAGACTTTCGAGTAAACATGGTCAACTTGATGAACAAGATGGATCTTATATGAGTGAATTACTCAGAAGTGTACAATTGGTTACAGATGTTATGGAAAGTCTTGTCAAGAGGATTATAATGGCGGAATCTGAAACTGCTATAGAGAAAGACAAGGTAACAGTAGGTGAAGAAGAGATTAAAAGGAAGACGCTCCTTATTGAAAACATGTCTATTAAGTTAGAGGAAATGGAAAGATTTGCTCTGGGTACAAATCTTATCCTGACTGAGATGCGGCAGAGAGTTGAAGATTTGGTTGAAGAAACTTCTAGACAGAGGCAGAGAGCTGCAGAAAATGAGCAGGAGCTTTGTCGTGTTAAGACCGACTTTGAGTCTCTAAAATCCTATGTCAGTAATCTCGTTAGTGTGAGAGAAACAATTCTATCATCAGAAAAGCAATTCCAGACAATTGAAAGGCTTTTTGAGCG : GCTGGTCGCCAAGTCAACACAACTGGAGAGTGAGAAGACGCAGAAAGAGGCTGAAGTAGAAAAACTGATGGAAGAAAATGTGAGGTTGACTGCTCTGCTTGATAAGAAAGAGGCACAGCTTTTGGCTATGAATGAACAGTGCAAAGTTATGGCGTTAAGTGCTTCAAATATTTAGTTCAGTGTGTTTAGACCCTTTGCTTCTTTTCGTGTTTAATGTCACCTGCTTAAAAAGGTGAAGACTGCAAAACCTTATATCCAGTTTATGCAACTCTGAGTGTCTCATTGATAAAATGCATATTTATCCTCAAATCTAATGGAAAAACTAGACACCCTCTTCGGTGTAGTGCCTTTTACA</gDNA_template>
            <first_frame> S  D  V  *  T  S  C  Q  F  V  L  Y  F  S  S  L  G  K  A  Q  F  A  M  N  L  Y  D  F  I  M  F  L  I  N  F  Y  L  E  M  L  S  L  W  C  I  V  N  E  I  R  L  I  P  G  A  L  Q  R  T  W  *  W  I  Y  Y  S  L  S  N  V  M  G  I  P  Q  Q  V  L  N  E  C  S  L  T  F  F  N  L  N  I  V  L  E  *  N  H  C  R  R  I  F  I  R  W  A  F  F  T  R  R  L  R  T  A  V  W  L  L  E  L  K  F  *  Y  D  S  H  V  V  H  I  N  C  L  L  L  V  T  K  T  Q  C  S  *  N  I  *  F  F  R  F  L  N  S  H  Q  *  L  D  K  V  M  A  G  E  G  N  I  D  L  S  A  L  K  S  Q  L  T  Q  T  D  V  T  W  K  L  E  M  E  K  S  Q  S  Q  V  D  A  L  Q  A  K  L  L  E  V  K  A  S  I  Q  G  S  E  E  D  T  K  K  E  L  D  V  L  W  H  R  V  R  T  A  T  T  L  M  T  Y  L  K  A  K  A  R  V  V  A  V  P  D  L  A  H  S  S  C  G  I  K  E  L  D  G  V  G  I  V  D  K  N  G  I  P  L  S  S  W  T  R  D  V  D  L  S  S  F  N  D  A  D  D  E  L  W  I  R  L  S  S  K  H  G  Q  L  D  E  Q  D  G  S  Y  M  S  E  L  L  R  S  V  Q  L  V  T  D  V  M  E  S  L  V  K  R  I  I  M  A  E  S  E  T  A  I  E  K  D  K  V  T  V  G  E  E  E  I  K  R  K  T  L  L  I  E  N  M  S  I  K  L  E  E  M  E  R  F  A  L  G  T  N  L  I  L  T  E  M  R  Q  R  V  E  D  L  V  E  E  T  S  R  Q  R  Q  R  A  A  E  N  E  Q  E  L  C  R  V  K  T  D  F  E  S  L  K  S  Y  V  S  N  L  V  S  V  R  E  T  I  L  S  S  E  K  Q  F  Q  T  I  E  R  L  F  E  R :   L  V  A  K  S  T  Q  L  E  S  E  K  T  Q  K  E  A  E  V  E  K  L  M  E  E  N  V  R  L  T  A  L  L  D  K  K  E  A  Q  L  L  A  M  N  E  Q  C  K  V  M  A  L  S  A  S  N  I  *  F  S  V  F  R  P  F  A  S  F  R  V  *  C  H  L  L  K  K  V  K  T  A  K  P  Y  I  Q  F  M  Q  L  *  V  S  H  *  *  N  A  Y  L  S  S  N  L  M  E  K  L  D  T  L  F  G  V  V  P  F  T </first_frame>
            <second_frame>  V  M  S  K  L  P  A  S  L  F  C  T  F  L  A  L  G  K  H  S  S  P  *  I  C  M  T  L  *  C  S  *  *  T  F  I  W  K  C  C  L  C  G  V  L  *  M  K  L  D  *  F  L  G  H  C  K  E  H  G  D  G  F  I  I  L  Y  P  M  S  W  E  F  L  N  K  F  *  T  S  A  A  *  P  F  L  I  *  I  L  C  L  N  E  I  T  V  E  E  F  L  Y  D  G  P  F  L  P  E  G  *  E  L  Q  C  G  C  *  S  *  S  F  D  M  I  P  M  W  S  I  L  T  V  F  Y  *  L  L  K  P  N  V  P  K  T  F  N  F  L  G  S  *  T  H  I  S  D  L  I  R  *  W  R  G  R  E  I  L  I  S  Q  L  *  N  P  N  *  L  K  L  T  L  L  G  S  *  R  W  R  K  A  S  P  K  W  M  L  Y  K  Q  N  C  W  R  *  K  L  L  F  R  D  Q  K  K  I  Q  R  R  S  *  M  F  Y  G  I  E  *  E  L  L  Q  H  *  *  R  T  *  K  L  K  P  E  S  W  L  F  Q  I  W  P  I  P  H  A  A  S  K  N  *  M  E  W  V  L  L  I  K  M  V  Y  H  Y  P  V  G  L  G  M  L  I  S  H  L  L  M  M  L  M  M  N  Y  G  L  D  F  R  V  N  M  V  N  L  M  N  K  M  D  L  I  *  V  N  Y  S  E  V  Y  N  W  L  Q  M  L  W  K  V  L  S  R  G  L  *  W  R  N  L  K  L  L  *  R  K  T  R  *  Q  *  V  K  K  R  L  K  G  R  R  S  L  L  K  T  C  L  L  S  *  R  K  W  K  D  L  L  W  V  Q  I  L  S  *  L  R  C  G  R  E  L  K  I  W  L  K  K  L  L  D  R  G  R  E  L  Q  K  M  S  R  S  F  V  V  L  R  P  T  L  S  L  *  N  P  M  S  V  I  S  L  V  *  E  K  Q  F  Y  H  Q  K  S  N  S  R  Q  L  K  G  F  L  S   : G  W  S  P  S  Q  H  N  W  R  V  R  R  R  R  K  R  L  K  *  K  N  *  W  K  K  M  *  G  *  L  L  C  L  I  R  K  R  H  S  F  W  L  *  M  N  S  A  K  L  W  R  *  V  L  Q  I  F  S  S  V  C  L  D  P  L  L  L  F  V  F  N  V  T  C  L  K  R  *  R  L  Q  N  L  I  S  S  L  C  N  S  E  C  L  I  D  K  M  H  I  Y  P  Q  I  *  W  K  N  *  T  P  S  S  V  *  C  L  L   </second_frame>
            <third_frame>   *  C  L  N  F  L  P  V  C  F  V  L  F  *  P  W  E  S  T  V  R  H  E  F  V  *  L  Y  N  V  L  N  K  L  L  S  G  N  A  V  F  V  V  Y  C  E  *  N  *  T  N  S  W  G  I  A  K  N  M  V  M  D  L  L  F  F  I  Q  C  H  G  N  S  S  T  S  F  K  R  V  Q  L  N  L  F  *  S  E  Y  C  A  *  M  K  S  L  *  K  N  F  Y  T  M  G  L  F  Y  P  K  V  E  N  C  S  V  V  V  R  V  K  V  L  I  *  F  P  C  G  P  Y  *  L  S  S  T  S  Y  *  N  P  M  F  L  K  H  L  I  F  *  V  P  E  L  T  S  V  T  *  *  G  D  G  G  G  G  K  Y  *  S  L  S  F  K  I  P  I  D  S  N  *  R  Y  L  E  A  R  D  G  E  K  P  V  P  S  G  C  F  T  S  K  T  V  G  G  K  S  F  Y  S  G  I  R  R  R  Y  K  E  G  V  R  C  S  M  A  *  S  K  N  C  Y  N  I  D  D  V  L  E  S  *  S  Q  S  R  G  C  S  R  F  G  P  F  L  M  R  H  Q  R  T  R  W  S  G  Y  C  *  *  K  W  Y  T  I  I  Q  L  D  *  G  C  *  S  L  I  F  *  *  C  *  *  *  I  M  D  *  T  F  E  *  T  W  S  T  *  *  T  R  W  I  L  Y  E  *  I  T  Q  K  C  T  I  G  Y  R  C  Y  G  K  S  C  Q  E  D  Y  N  G  G  I  *  N  C  Y  R  E  R  Q  G  N  S  R  *  R  R  D  *  K  E  D  A  P  Y  *  K  H  V  Y  *  V  R  G  N  G  K  I  C  S  G  Y  K  S  Y  P  D  *  D  A  A  E  S  *  R  F  G  *  R  N  F  *  T  E  A  E  S  C  R  K  *  A  G  A  L  S  C  *  D  R  L  *  V  S  K  I  L  C  Q  *  S  R  *  C  E  R  N  N  S  I  I  R  K  A  I  P  D  N  *  K  A  F  *  A  :  A  G  R  Q  V  N  T  T  G  E  *  E  D  A  E  R  G  *  S  R  K  T  D  G  R  K  C  E  V  D  C  S  A  *  *  E  R  G  T  A  F  G  Y  E  *  T  V  Q  S  Y  G  V  K  C  F  K  Y  L  V  Q  C  V  *  T  L  C  F  F  S  C  L  M  S  P  A  *  K  G  E  D  C  K  T  L  Y  P  V  Y  A  T  L  S  V  S  L  I  K  C  I  F  I  L  K  S  N  G  K  T  R  H  P  L  R  C  S  A  F  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0057H03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28614" stop="27743"/>
                    <exon start="25798" stop="25624"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDKVMAGEGNIDLSALKSQLTQTDVTWKLEMEKSQSQVDALQAKLLEVKASIQGSEEDTKKELDVLWHRVRTATTLMTYLKAKARVVAVPDLAHSSCGIKELDGVGIVDKNGIPLSSWTRDVDLSSFNDADDELWIRLSSKHGQLDEQDGSYMSELLRSVQLVTDVMESLVKRIIMAESETAIEKDKVTVGEEEIKRKTLLIENMSIKLEEMERFALGTNLILTEMRQRVEDLVEETSRQRQRAAENEQELCRVKTDFESLKSYVSNLVSVRETILSSEKQFQTIERLFERLVAKSTQLESEKTQKEAEVEKLMEENVRLTALLDKKEAQLLAMNEQCKVMALSASNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="36026" PGL_stop="35256"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36026" e_stop="35256"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="36026" e_stop="35256" e_length="771"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36026" stop="35256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569712" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAACGATGCTCTCTACCTACCCGAAACACTTCACTCCTCTTCCAGTACAACTTTTCTCCAAATCTCAACATCGCCATGTAATTCGTTTTCCCATCAAATGCAACAGCAGCAGCAGCAGTGATAATGGCAACGAATCGCAACCAAACACGGTGGAGATTCGAATCAGAAGACGTCCGTCAAAACGACAAAGGCAGAAGGAAGAAGAAATGATAAATGCAGGGAAACAAGCTGTTAAACCTAAACCTCCACCAAAGGATTGGGAATCAATGAATCTAACTGAGAAGGCAATCGAATTGTACGTCGGAGAAAAAGGACTTTTGTTCTGGCTAAACAAATTTGCTTATGCTTCTATTTTTATTATAATTGGGGGTTGGATACTTTTTCGATTTGTTGGTCCTGCATTTGACCTTTACCAGTTGGATACTCCTACTCCTCTTGCTCCTGAATCTATGTTTAAAGGTACAGGAGACAAACCTTGACCCACTGGAAAACTCAAGTTTCAGAAGAAATTTTCGCTTTAATTACTCCAAATTTTTGTAACTTGAAAGTTATTAGTACTACTAGATTTAAGCAAATAAACATGTCAATTGGATACTATATATATTTGTGAAGTTCAACGATGATACTTGTATAAGTTATGCGAGAACATATGTATATATTTGTATAAGTAAAACATGAAGCAAATATCCCCTTAATACTATTTGTTGAACTTGAAATTGTCAACCTCTTTGAATACCCAATGACATAAGAAAATTTAAGATGGTCCATGA</gDNA_template>
            <first_frame> T  T  M  L  S  T  Y  P  K  H  F  T  P  L  P  V  Q  L  F  S  K  S  Q  H  R  H  V  I  R  F  P  I  K  C  N  S  S  S  S  S  D  N  G  N  E  S  Q  P  N  T  V  E  I  R  I  R  R  R  P  S  K  R  Q  R  Q  K  E  E  E  M  I  N  A  G  K  Q  A  V  K  P  K  P  P  P  K  D  W  E  S  M  N  L  T  E  K  A  I  E  L  Y  V  G  E  K  G  L  L  F  W  L  N  K  F  A  Y  A  S  I  F  I  I  I  G  G  W  I  L  F  R  F  V  G  P  A  F  D  L  Y  Q  L  D  T  P  T  P  L  A  P  E  S  M  F  K  G  T  G  D  K  P  *  P  T  G  K  L  K  F  Q  K  K  F  S  L  *  L  L  Q  I  F  V  T  *  K  L  L  V  L  L  D  L  S  K  *  T  C  Q  L  D  T  I  Y  I  C  E  V  Q  R  *  Y  L  Y  K  L  C  E  N  I  C  I  Y  L  Y  K  *  N  M  K  Q  I  S  P  *  Y  Y  L  L  N  L  K  L  S  T  S  L  N  T  Q  *  H  K  K  I  *  D  G  P  * </first_frame>
            <second_frame>  Q  R  C  S  L  P  T  R  N  T  S  L  L  F  Q  Y  N  F  S  P  N  L  N  I  A  M  *  F  V  F  P  S  N  A  T  A  A  A  A  V  I  M  A  T  N  R  N  Q  T  R  W  R  F  E  S  E  D  V  R  Q  N  D  K  G  R  R  K  K  K  *  *  M  Q  G  N  K  L  L  N  L  N  L  H  Q  R  I  G  N  Q  *  I  *  L  R  R  Q  S  N  C  T  S  E  K  K  D  F  C  S  G  *  T  N  L  L  M  L  L  F  L  L  *  L  G  V  G  Y  F  F  D  L  L  V  L  H  L  T  F  T  S  W  I  L  L  L  L  L  L  L  N  L  C  L  K  V  Q  E  T  N  L  D  P  L  E  N  S  S  F  R  R  N  F  R  F  N  Y  S  K  F  L  *  L  E  S  Y  *  Y  Y  *  I  *  A  N  K  H  V  N  W  I  L  Y  I  F  V  K  F  N  D  D  T  C  I  S  Y  A  R  T  Y  V  Y  I  C  I  S  K  T  *  S  K  Y  P  L  N  T  I  C  *  T  *  N  C  Q  P  L  *  I  P  N  D  I  R  K  F  K  M  V  H   </second_frame>
            <third_frame>   N  D  A  L  Y  L  P  E  T  L  H  S  S  S  S  T  T  F  L  Q  I  S  T  S  P  C  N  S  F  S  H  Q  M  Q  Q  Q  Q  Q  Q  *  *  W  Q  R  I  A  T  K  H  G  G  D  S  N  Q  K  T  S  V  K  T  T  K  A  E  G  R  R  N  D  K  C  R  E  T  S  C  *  T  *  T  S  T  K  G  L  G  I  N  E  S  N  *  E  G  N  R  I  V  R  R  R  K  R  T  F  V  L  A  K  Q  I  C  L  C  F  Y  F  Y  Y  N  W  G  L  D  T  F  S  I  C  W  S  C  I  *  P  L  P  V  G  Y  S  Y  S  S  C  S  *  I  Y  V  *  R  Y  R  R  Q  T  L  T  H  W  K  T  Q  V  S  E  E  I  F  A  L  I  T  P  N  F  C  N  L  K  V  I  S  T  T  R  F  K  Q  I  N  M  S  I  G  Y  Y  I  Y  L  *  S  S  T  M  I  L  V  *  V  M  R  E  H  M  Y  I  F  V  *  V  K  H  E  A  N  I  P  L  I  L  F  V  E  L  E  I  V  N  L  F  E  Y  P  M  T  *  E  N  L  R  W  S  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0057H03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36026" stop="35547"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTMLSTYPKHFTPLPVQLFSKSQHRHVIRFPIKCNSSSSSDNGNESQPNTVEIRIRRRPSKRQRQKEEEMINAGKQAVKPKPPPKDWESMNLTEKAIELYVGEKGLLFWLNKFAYASIFIIIGGWILFRFVGPAFDLYQLDTPTPLAPESMFKGTGDKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="37022" PGL_stop="41356"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37022" e_stop="37231"/>
            <exon e_start="37542" e_stop="38228"/>
            <exon e_start="40990" e_stop="41075"/>
            <exon e_start="41293" e_stop="41356"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.834" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.912" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37022" e_stop="37231" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.834">
            <gDNA_intron_boundary i_start="37232" i_stop="37541" i_length="310"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37542" e_stop="38228" e_length="687"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="38229" i_stop="40989" i_length="2761"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40990" e_stop="41075" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.912">
            <gDNA_intron_boundary i_start="41076" i_stop="41292" i_length="217"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41293" e_stop="41356" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37022" stop="37231"/>
              <exon start="37542" stop="38228"/>
              <exon start="40990" stop="41075"/>
              <exon start="41293" stop="41356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584838" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTCAATTCTTCAATTCACCGAGTTGACTCCTCCGCCATGTCCGACCACCAGAGAACTCGGAAGGACGATCCCTTCCTTCTCAATTACAACTCCGATGAACTCAGAATCGCCTCTGAATTTCTCTCCAATTGGCTCCCCTTTCTCTCCCGTGACCTCTGCCGCTCCTGCACCCACACCCTCTCCGACCGCATCCGATCCCTCAATTCTA : AAGTTAGTGGTAATGCAGAATGCTTGAAGCAACCAAAGAATGTGAGTGTTTTGACTCCAGAACGTTGTGATTCGGATGGATGCAATGGGAGTCAAGAGAATTGTGACAACAATTCGCTTGGAAGTTGGAACGATTATGGTGACTTGAATGATAATGCAGATACAAACTCATTGGGGAGTTGGAAAGATGGGGCTGGTGGGGAGCCCTTTGAGGAGCTTTCTGTGGACAGAAATTCATCTGACGGTTGTATAGATGGCGCAGATTCACAATCTCAATCTGTTGGAGAGGCATCTACAAGTGAAGCATTCAAATCATCCTTACCTGTGACTACCCCGAAAGTGAAGATGTCATGGGCTGATATGGCTCAGGAGGATGAACTTCAAGCTGAGGAAGTGAGTGAGTCAATTGCCTTGAGAAGTCAGGTGAATGGTGTGGCTGAAGAGGAAATTACTAATCCGGAGAGTAAGCAAAAAACAGAATTGTCAAGGGAGAAACGAGAGTACATTAGATTCTGTAATGTGAAGAGGAAAAAGGATTTCATATGTTTGGAGAGGGTGAGGGGGAAAATTGTGAATATACTTGATGGATTGGAGCTACATAAGGGTGTCTTTAGCGCCGCTGAGCAAATTAGAATAGTTAAATATGCGGAGAAGCTTGACCAGATGGGGAAGAATGGGGAACTGAAAG : AGAGGACTTATACTACACCAACAAAGTGGATGAGGGGCAAAGGACGTGTGACAATCCAATTTGGCTGTTGTTACAACTATGCACCA : GATAAGAATGGCAATCCCCCAGGGATCCTCAAAAGTGAAACTGTTGATCCATTGCCTGATCTTT</gDNA_template>
            <first_frame> N  S  I  L  Q  F  T  E  L  T  P  P  P  C  P  T  T  R  E  L  G  R  T  I  P  S  F  S  I  T  T  P  M  N  S  E  S  P  L  N  F  S  P  I  G  S  P  F  S  P  V  T  S  A  A  P  A  P  T  P  S  P  T  A  S  D  P  S  I  L  :  K  L  V  V  M  Q  N  A  *  S  N  Q  R  M  *  V  F  *  L  Q  N  V  V  I  R  M  D  A  M  G  V  K  R  I  V  T  T  I  R  L  E  V  G  T  I  M  V  T  *  M  I  M  Q  I  Q  T  H  W  G  V  G  K  M  G  L  V  G  S  P  L  R  S  F  L  W  T  E  I  H  L  T  V  V  *  M  A  Q  I  H  N  L  N  L  L  E  R  H  L  Q  V  K  H  S  N  H  P  Y  L  *  L  P  R  K  *  R  C  H  G  L  I  W  L  R  R  M  N  F  K  L  R  K  *  V  S  Q  L  P  *  E  V  R  *  M  V  W  L  K  R  K  L  L  I  R  R  V  S  K  K  Q  N  C  Q  G  R  N  E  S  T  L  D  S  V  M  *  R  G  K  R  I  S  Y  V  W  R  G  *  G  G  K  L  *  I  Y  L  M  D  W  S  Y  I  R  V  S  L  A  P  L  S  K  L  E  *  L  N  M  R  R  S  L  T  R  W  G  R  M  G  N  *  K  :  R  G  L  I  L  H  Q  Q  S  G  *  G  A  K  D  V  *  Q  S  N  L  A  V  V  T  T  M  H  Q :   I  R  M  A  I  P  Q  G  S  S  K  V  K  L  L  I  H  C  L  I  F </first_frame>
            <second_frame>  I  Q  F  F  N  S  P  S  *  L  L  R  H  V  R  P  P  E  N  S  E  G  R  S  L  P  S  Q  L  Q  L  R  *  T  Q  N  R  L  *  I  S  L  Q  L  A  P  L  S  L  P  *  P  L  P  L  L  H  P  H  P  L  R  P  H  P  I  P  Q  F  * :   S  *  W  *  C  R  M  L  E  A  T  K  E  C  E  C  F  D  S  R  T  L  *  F  G  W  M  Q  W  E  S  R  E  L  *  Q  Q  F  A  W  K  L  E  R  L  W  *  L  E  *  *  C  R  Y  K  L  I  G  E  L  E  R  W  G  W  W  G  A  L  *  G  A  F  C  G  Q  K  F  I  *  R  L  Y  R  W  R  R  F  T  I  S  I  C  W  R  G  I  Y  K  *  S  I  Q  I  I  L  T  C  D  Y  P  E  S  E  D  V  M  G  *  Y  G  S  G  G  *  T  S  S  *  G  S  E  *  V  N  C  L  E  K  S  G  E  W  C  G  *  R  G  N  Y  *  S  G  E  *  A  K  N  R  I  V  K  G  E  T  R  V  H  *  I  L  *  C  E  E  E  K  G  F  H  M  F  G  E  G  E  G  E  N  C  E  Y  T  *  W  I  G  A  T  *  G  C  L  *  R  R  *  A  N  *  N  S  *  I  C  G  E  A  *  P  D  G  E  E  W  G  T  E  R :   E  D  L  Y  Y  T  N  K  V  D  E  G  Q  R  T  C  D  N  P  I  W  L  L  L  Q  L  C  T   : R  *  E  W  Q  S  P  R  D  P  Q  K  *  N  C  *  S  I  A  *  S   </second_frame>
            <third_frame>   F  N  S  S  I  H  R  V  D  S  S  A  M  S  D  H  Q  R  T  R  K  D  D  P  F  L  L  N  Y  N  S  D  E  L  R  I  A  S  E  F  L  S  N  W  L  P  F  L  S  R  D  L  C  R  S  C  T  H  T  L  S  D  R  I  R  S  L  N  S   : K  V  S  G  N  A  E  C  L  K  Q  P  K  N  V  S  V  L  T  P  E  R  C  D  S  D  G  C  N  G  S  Q  E  N  C  D  N  N  S  L  G  S  W  N  D  Y  G  D  L  N  D  N  A  D  T  N  S  L  G  S  W  K  D  G  A  G  G  E  P  F  E  E  L  S  V  D  R  N  S  S  D  G  C  I  D  G  A  D  S  Q  S  Q  S  V  G  E  A  S  T  S  E  A  F  K  S  S  L  P  V  T  T  P  K  V  K  M  S  W  A  D  M  A  Q  E  D  E  L  Q  A  E  E  V  S  E  S  I  A  L  R  S  Q  V  N  G  V  A  E  E  E  I  T  N  P  E  S  K  Q  K  T  E  L  S  R  E  K  R  E  Y  I  R  F  C  N  V  K  R  K  K  D  F  I  C  L  E  R  V  R  G  K  I  V  N  I  L  D  G  L  E  L  H  K  G  V  F  S  A  A  E  Q  I  R  I  V  K  Y  A  E  K  L  D  Q  M  G  K  N  G  E  L  K   : E  R  T  Y  T  T  P  T  K  W  M  R  G  K  G  R  V  T  I  Q  F  G  C  C  Y  N  Y  A  P  :  D  K  N  G  N  P  P  G  I  L  K  S  E  T  V  D  P  L  P  D  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0057H03.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37024" stop="37231"/>
                    <exon start="37542" stop="38228"/>
                    <exon start="40990" stop="41075"/>
                    <exon start="41293" stop="41355"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNSSIHRVDSSAMSDHQRTRKDDPFLLNYNSDELRIASEFLSNWLPFLSRDLCRSCTHTLSDRIRSLNSKVSGNAECLKQPKNVSVLTPERCDSDGCNGSQENCDNNSLGSWNDYGDLNDNADTNSLGSWKDGAGGEPFEELSVDRNSSDGCIDGADSQSQSVGEASTSEAFKSSLPVTTPKVKMSWADMAQEDELQAEEVSESIALRSQVNGVAEEEITNPESKQKTELSREKREYIRFCNVKRKKDFICLERVRGKIVNILDGLELHKGVFSAAEQIRIVKYAEKLDQMGKNGELKERTYTTPTKWMRGKGRVTIQFGCCYNYAPDKNGNPPGILKSETVDPLPDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="41453" PGL_stop="41962"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41453" e_stop="41603"/>
            <exon e_start="41677" e_stop="41748"/>
            <exon e_start="41844" e_stop="41962"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.991" e_score="0.901"/>
          <exon-intron don_prob="0.000" acc_prob="0.702" e_score="0.986"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="41453" e_stop="41603" e_length="151"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.991">
            <gDNA_intron_boundary i_start="41604" i_stop="41676" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="41677" e_stop="41748" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.702">
            <gDNA_intron_boundary i_start="41749" i_stop="41843" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="41844" e_stop="41962" e_length="119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41453" stop="41603"/>
              <exon start="41677" stop="41748"/>
              <exon start="41844" stop="41962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602678" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCATACCACCACATATTGACAATCATGATTTTGTGCGCCCATTTTGTACTGTTTCATTCCTTAGCGAGTGCAACATTGTGTTCGGATCCAACTTGAAAATAGTGGGTCCTGGTGAATTTGCTGGTGCGATTGCAATACCATTGCCAGTTGG : ATCTGTACTTGTCTTGAATGGAAATGGAGCTGATGTAGCTAAACACTGTGTGCCAGCTGTGCCTACTAAGAG : GATTTCAATCACATTTAGAAGAATGGATGAATCTAAAAGGCCAACTGGATATGTTCCCGAGCATGATTTACAAGGGTTGCAGCCCTTATCATATGAATCAGACTCGCAAAAGAAATCAA</gDNA_template>
            <first_frame> A  Y  H  H  I  L  T  I  M  I  L  C  A  H  F  V  L  F  H  S  L  A  S  A  T  L  C  S  D  P  T  *  K  *  W  V  L  V  N  L  L  V  R  L  Q  Y  H  C  Q  L   : D  L  Y  L  S  *  M  E  M  E  L  M  *  L  N  T  V  C  Q  L  C  L  L  R   : G  F  Q  S  H  L  E  E  W  M  N  L  K  G  Q  L  D  M  F  P  S  M  I  Y  K  G  C  S  P  Y  H  M  N  Q  T  R  K  R  N  Q </first_frame>
            <second_frame>  H  T  T  T  Y  *  Q  S  *  F  C  A  P  I  L  Y  C  F  I  P  *  R  V  Q  H  C  V  R  I  Q  L  E  N  S  G  S  W  *  I  C  W  C  D  C  N  T  I  A  S  W  :  I  C  T  C  L  E  W  K  W  S  *  C  S  *  T  L  C  A  S  C  A  Y  *  E  :  D  F  N  H  I  *  K  N  G  *  I  *  K  A  N  W  I  C  S  R  A  *  F  T  R  V  A  A  L  I  I  *  I  R  L  A  K  E  I   </second_frame>
            <third_frame>   I  P  P  H  I  D  N  H  D  F  V  R  P  F  C  T  V  S  F  L  S  E  C  N  I  V  F  G  S  N  L  K  I  V  G  P  G  E  F  A  G  A  I  A  I  P  L  P  V  G :   S  V  L  V  L  N  G  N  G  A  D  V  A  K  H  C  V  P  A  V  P  T  K  R :   I  S  I  T  F  R  R  M  D  E  S  K  R  P  T  G  Y  V  P  E  H  D  L  Q  G  L  Q  P  L  S  Y  E  S  D  S  Q  K  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0057H03.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41455" stop="41603"/>
                    <exon start="41677" stop="41748"/>
                    <exon start="41844" stop="41961"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKIVGPGEFAGAIAIPLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRRMDESKRPTGYVPEHDLQGLQPLSYESDSQKKS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="44938" PGL_stop="45397"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44938" e_stop="45397"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="44938" e_stop="45397" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44938" stop="45397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591120" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTATTATAGATGATCAAATTTTTTCTTCGAATCCGAAATTAAATTACAATACACACACAGAAAAATAGTTTAAATTTTTAATTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATATTTTTTTAAAAAAAATTAGAAGTAGTAAATATAAATTTAAAATTAATTTTTTAAAATCCGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATATGATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGTATATCAGCTCCAAATGACAAAGTTGGGGGTATATCAGACCCTTTTCCCTTGATTTTTTCCT</gDNA_template>
            <first_frame> L  I  I  D  D  Q  I  F  S  S  N  P  K  L  N  Y  N  T  H  T  E  K  *  F  K  F  L  I  L  *  T  K  E  *  K  K  K  T  K  *  E  *  E  I  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  P  L  N  I  F  L  K  K  I  R  S  S  K  Y  K  F  K  I  N  F  L  K  S  V  K  *  R  V  Y  V  S  H  F  V  T  A  G  V  Y  M  M  *  A  V  C  I  T  V  R  A  Y  M  S  H  F  Y  N  E  G  I  S  A  P  N  D  K  V  G  G  I  S  D  P  F  P  L  I  F  S  </first_frame>
            <second_frame>  L  L  *  M  I  K  F  F  L  R  I  R  N  *  I  T  I  H  T  Q  K  N  S  L  N  F  *  F  F  K  L  R  N  E  R  K  K  Q  N  K  N  K  K  F  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  P  *  I  F  F  *  K  K  L  E  V  V  N  I  N  L  K  L  I  F  *  N  P  L  N  E  G  Y  M  *  A  I  L  *  R  Q  G  Y  I  *  C  E  P  F  V  *  R  *  G  H  I  *  A  T  F  I  T  R  V  Y  Q  L  Q  M  T  K  L  G  V  Y  Q  T  L  F  P  *  F  F  P </second_frame>
            <third_frame>   Y  Y  R  *  S  N  F  F  F  E  S  E  I  K  L  Q  Y  T  H  R  K  I  V  *  I  F  N  S  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  T  P  K  Y  F  F  K  K  N  *  K  *  *  I  *  I  *  N  *  F  F  K  I  R  *  M  K  G  I  C  E  P  F  C  N  G  R  G  I  Y  D  V  S  R  L  Y  N  G  K  G  I  Y  E  P  L  L  *  R  G  Y  I  S  S  K  *  Q  S  W  G  Y  I  R  P  F  S  L  D  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0057H03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="47986" PGL_stop="49412"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47986" e_stop="48408"/>
            <exon e_start="48514" e_stop="48611"/>
            <exon e_start="48927" e_stop="49412"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="0.988"/>
          <exon-intron don_prob="0.993" acc_prob="0.941" e_score="0.990"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="47986" e_stop="48408" e_length="423"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="48409" i_stop="48513" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="48514" e_stop="48611" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.941">
            <gDNA_intron_boundary i_start="48612" i_stop="48926" i_length="315"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="48927" e_stop="49412" e_length="486"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47986" stop="48408"/>
              <exon start="48514" stop="48611"/>
              <exon start="48927" stop="49412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589573" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACATACATACATACATTTGTAGAGTTGTTGTTGTTTTATGATGGAACATCAACACAACATAGAAGATGGTGGTAAAAATAGTAACAACAGTTTCCTGTGCAGGCAAAGTAGTAGCCGTTGGACGCCAACGAGCGATCAGATAAGAATATTGAAGGATCTCTACTACAACAATGGAGTTAGGTCTCCAACTGCTGAACAGATTCAGAGGATATCTGCTAAGTTGAGACAGTACGGTAAGATTGAAGGCAAAAATGTGTTTTATTGGTTTCAGAACCATAAAGCTCGTGAAAGACAAAAGAAGAGGCTCATTGCTGCTGCCTCTGCCACTGATAATAATAATATCTCTTCCATGCAAATGATTCCACATCTTTGGAGATCTCCTGATGATCACCACAAGTACAACACTACTACTACTAATCCAG : GTGTTCAGTGTCCATCACCATCTTCACATGGGGTATTACCAGTGGTACAGACTGGAAACTATGGTTATGGAACTTTGGCTATGGAGAAGAGCTTTAGG : GAGTGTTCAATATCACCACCAGGTGGTAGTTATCATCAAAATTTGACATGGGTTGGTGTTGATCCTTACAACAATATGAGTACTACTTCTCCAGCAACTTACCCTTTTCTTGAAAAAAGCAACAACAAACACTATGAAGAAACCCTAGATGAAGAGCAAGAAGAAGAAAATTACCAAAGGGGTAACTCTGCTTTAGAAACTCTGTCACTTTTCCCCATGCATGAAGAGAACATCATCTCAAATTTCTGCATCAAACATCATGAATCTTCTGGAGGATGGTACCATTCTGATAATAACAATTTGGCTGCTCTTGAACTTACTCTCAACTCTTTCCCCTAAATTATGAACTAGTCTATCTTATGTTTGTAGTAAGTAAGTACTAATCTAATTTGGTATGTGCCAAGCTATTTGGACCTTATGGTAATGTTAATTAATCTTAATCTAAGTTGTACTAATATTATTAATTAAAGTATGGATAAGTTTATT</gDNA_template>
            <first_frame> Y  I  H  T  Y  I  C  R  V  V  V  V  L  *  W  N  I  N  T  T  *  K  M  V  V  K  I  V  T  T  V  S  C  A  G  K  V  V  A  V  G  R  Q  R  A  I  R  *  E  Y  *  R  I  S  T  T  T  M  E  L  G  L  Q  L  L  N  R  F  R  G  Y  L  L  S  *  D  S  T  V  R  L  K  A  K  M  C  F  I  G  F  R  T  I  K  L  V  K  D  K  R  R  G  S  L  L  L  P  L  P  L  I  I  I  I  S  L  P  C  K  *  F  H  I  F  G  D  L  L  M  I  T  T  S  T  T  L  L  L  L  I  Q  :  V  F  S  V  H  H  H  L  H  M  G  Y  Y  Q  W  Y  R  L  E  T  M  V  M  E  L  W  L  W  R  R  A  L  G :   S  V  Q  Y  H  H  Q  V  V  V  I  I  K  I  *  H  G  L  V  L  I  L  T  T  I  *  V  L  L  L  Q  Q  L  T  L  F  L  K  K  A  T  T  N  T  M  K  K  P  *  M  K  S  K  K  K  K  I  T  K  G  V  T  L  L  *  K  L  C  H  F  S  P  C  M  K  R  T  S  S  Q  I  S  A  S  N  I  M  N  L  L  E  D  G  T  I  L  I  I  T  I  W  L  L  L  N  L  L  S  T  L  S  P  K  L  *  T  S  L  S  Y  V  C  S  K  *  V  L  I  *  F  G  M  C  Q  A  I  W  T  L  W  *  C  *  L  I  L  I  *  V  V  L  I  L  L  I  K  V  W  I  S  L   </first_frame>
            <second_frame>  T  Y  I  H  T  F  V  E  L  L  L  F  Y  D  G  T  S  T  Q  H  R  R  W  W  *  K  *  *  Q  Q  F  P  V  Q  A  K  *  *  P  L  D  A  N  E  R  S  D  K  N  I  E  G  S  L  L  Q  Q  W  S  *  V  S  N  C  *  T  D  S  E  D  I  C  *  V  E  T  V  R  *  D  *  R  Q  K  C  V  L  L  V  S  E  P  *  S  S  *  K  T  K  E  E  A  H  C  C  C  L  C  H  *  *  *  *  Y  L  F  H  A  N  D  S  T  S  L  E  I  S  *  *  S  P  Q  V  Q  H  Y  Y  Y  *  S  R :   C  S  V  S  I  T  I  F  T  W  G  I  T  S  G  T  D  W  K  L  W  L  W  N  F  G  Y  G  E  E  L  *   : G  V  F  N  I  T  T  R  W  *  L  S  S  K  F  D  M  G  W  C  *  S  L  Q  Q  Y  E  Y  Y  F  S  S  N  L  P  F  S  *  K  K  Q  Q  Q  T  L  *  R  N  P  R  *  R  A  R  R  R  K  L  P  K  G  *  L  C  F  R  N  S  V  T  F  P  H  A  *  R  E  H  H  L  K  F  L  H  Q  T  S  *  I  F  W  R  M  V  P  F  *  *  *  Q  F  G  C  S  *  T  Y  S  Q  L  F  P  L  N  Y  E  L  V  Y  L  M  F  V  V  S  K  Y  *  S  N  L  V  C  A  K  L  F  G  P  Y  G  N  V  N  *  S  *  S  K  L  Y  *  Y  Y  *  L  K  Y  G  *  V  Y  </second_frame>
            <third_frame>   H  T  Y  I  H  L  *  S  C  C  C  F  M  M  E  H  Q  H  N  I  E  D  G  G  K  N  S  N  N  S  F  L  C  R  Q  S  S  S  R  W  T  P  T  S  D  Q  I  R  I  L  K  D  L  Y  Y  N  N  G  V  R  S  P  T  A  E  Q  I  Q  R  I  S  A  K  L  R  Q  Y  G  K  I  E  G  K  N  V  F  Y  W  F  Q  N  H  K  A  R  E  R  Q  K  K  R  L  I  A  A  A  S  A  T  D  N  N  N  I  S  S  M  Q  M  I  P  H  L  W  R  S  P  D  D  H  H  K  Y  N  T  T  T  T  N  P   : G  V  Q  C  P  S  P  S  S  H  G  V  L  P  V  V  Q  T  G  N  Y  G  Y  G  T  L  A  M  E  K  S  F  R  :  E  C  S  I  S  P  P  G  G  S  Y  H  Q  N  L  T  W  V  G  V  D  P  Y  N  N  M  S  T  T  S  P  A  T  Y  P  F  L  E  K  S  N  N  K  H  Y  E  E  T  L  D  E  E  Q  E  E  E  N  Y  Q  R  G  N  S  A  L  E  T  L  S  L  F  P  M  H  E  E  N  I  I  S  N  F  C  I  K  H  H  E  S  S  G  G  W  Y  H  S  D  N  N  N  L  A  A  L  E  L  T  L  N  S  F  P  *  I  M  N  *  S  I  L  C  L  *  *  V  S  T  N  L  I  W  Y  V  P  S  Y  L  D  L  M  V  M  L  I  N  L  N  L  S  C  T  N  I  I  N  *  S  M  D  K  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0057H03.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48009" stop="48408"/>
                    <exon start="48514" stop="48611"/>
                    <exon start="48927" stop="49265"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCCCFMMEHQHNIEDGGKNSNNSFLCRQSSSRWTPTSDQIRILKDLYYNNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKKRLIAAASATDNNNISSMQMIPHLWRSPDDHHKYNTTTTNPGVQCPSPSSHGVLPVVQTGNYGYGTLAMEKSFRECSISPPGGSYHQNLTWVGVDPYNNMSTTSPATYPFLEKSNNKHYEETLDEEQEEENYQRGNSALETLSLFPMHEENIISNFCIKHHESSGGWYHSDNNNLAALELTLNSFP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="61017" PGL_stop="57876"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61017" e_stop="60924"/>
            <exon e_start="60835" e_stop="60744"/>
            <exon e_start="59805" e_stop="59705"/>
            <exon e_start="58708" e_stop="58608"/>
            <exon e_start="58514" e_stop="58448"/>
            <exon e_start="58364" e_stop="58265"/>
            <exon e_start="58182" e_stop="58069"/>
            <exon e_start="57963" e_stop="57876"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.582" acc_prob="0.836" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.679" e_score="1.000"/>
          <exon-intron don_prob="0.425" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.844" acc_prob="0.440" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61017" e_stop="60924" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="60923" i_stop="60836" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60835" e_stop="60744" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.582" acc_prob="0.836">
            <gDNA_intron_boundary i_start="60743" i_stop="59806" i_length="938"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59805" e_stop="59705" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="59704" i_stop="58709" i_length="996"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58708" e_stop="58608" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.962" acc_prob="0.679">
            <gDNA_intron_boundary i_start="58607" i_stop="58515" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58514" e_stop="58448" e_length="67"/>
          </exon>
          <intron i_serial="5" don_prob="0.425" acc_prob="0.993">
            <gDNA_intron_boundary i_start="58447" i_stop="58365" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="58364" e_stop="58265" e_length="100"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58264" i_stop="58183" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="58182" e_stop="58069" e_length="114"/>
          </exon>
          <intron i_serial="7" don_prob="0.844" acc_prob="0.440">
            <gDNA_intron_boundary i_start="58068" i_stop="57964" i_length="105"/>
          </intron>
          <exon e_serial="8" e_score="0.977">
            <gDNA_exon_boundary e_start="57963" e_stop="57876" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61017" stop="60924"/>
              <exon start="60835" stop="60744"/>
              <exon start="59805" stop="59705"/>
              <exon start="58708" stop="58608"/>
              <exon start="58514" stop="58448"/>
              <exon start="58364" stop="58265"/>
              <exon start="58182" stop="58069"/>
              <exon start="57963" stop="57876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585584" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTCGAGTTCTCAGTTGTAAACTTCCGTCGCCGCCGGTGAAATACAATACAAAAGAATCTGCAACTTGCTTGTTATCGAAGAACACCATGGCAG : GTGGACCAACTGACAGAGAAGACAAGGTCTCACTTGAGACCACTGAAGAAATTCTACAGAGCATGGAAGTCGGCATGACATTTCGCGACTAT : AGTGGTAGAATCAGTTCAATGGATTTCCATAAGACATCAAATTTTATGGTGACAGCCAGTGATGATGAGTCCATACGTCTATATGATGTTGCAAATGCAAC : GTGTTTGAAAACTATTAATAGCAAAAAGTACGGGGTCGATCTGGTTAGCTTCACTTCTCATCCAACGACTGTAATATACTCCTCCAAGAATGGTTGGGATG : AATCTCTACGACTTCTTTCATTGCATGACAACAAGTACTTGCGGTATTTCAAGGGTCATCGTGACAG : GGTCGTCTCTCTTAGCTTATGCTATAGAAAGGAGTATTTTATCTCTGGCTCACTTGATCGAACTGTTCTACTTTGGGATCAAAGGGCTGAGAAATGCCAG : GGCCTTCTTCGAGTGCAAGGAAGACCAGCTACTGCTTATGATGAGCAAGGCCTTGTATTTGCTATTGCTTTTGGAGGATATATAAGGATGTTTGATGCACGCTATTTCGACAAG : GGACCTTTTGAAATTTTCTCTGTTGGTGGAGATGTGTCTGATGCTAACAGCGTTAAGTTCAGTAACGATGGGAGACTTGTGCTTTTGA</gDNA_template>
            <first_frame> A  R  V  L  S  C  K  L  P  S  P  P  V  K  Y  N  T  K  E  S  A  T  C  L  L  S  K  N  T  M  A   : G  G  P  T  D  R  E  D  K  V  S  L  E  T  T  E  E  I  L  Q  S  M  E  V  G  M  T  F  R  D  Y  :  S  G  R  I  S  S  M  D  F  H  K  T  S  N  F  M  V  T  A  S  D  D  E  S  I  R  L  Y  D  V  A  N  A  T :   C  L  K  T  I  N  S  K  K  Y  G  V  D  L  V  S  F  T  S  H  P  T  T  V  I  Y  S  S  K  N  G  W  D   : E  S  L  R  L  L  S  L  H  D  N  K  Y  L  R  Y  F  K  G  H  R  D  R :   V  V  S  L  S  L  C  Y  R  K  E  Y  F  I  S  G  S  L  D  R  T  V  L  L  W  D  Q  R  A  E  K  C  Q  :  G  L  L  R  V  Q  G  R  P  A  T  A  Y  D  E  Q  G  L  V  F  A  I  A  F  G  G  Y  I  R  M  F  D  A  R  Y  F  D  K  :  G  P  F  E  I  F  S  V  G  G  D  V  S  D  A  N  S  V  K  F  S  N  D  G  R  L  V  L  L  </first_frame>
            <second_frame>  L  E  F  S  V  V  N  F  R  R  R  R  *  N  T  I  Q  K  N  L  Q  L  A  C  Y  R  R  T  P  W  Q  :  V  D  Q  L  T  E  K  T  R  S  H  L  R  P  L  K  K  F  Y  R  A  W  K  S  A  *  H  F  A  T  I :   V  V  E  S  V  Q  W  I  S  I  R  H  Q  I  L  W  *  Q  P  V  M  M  S  P  Y  V  Y  M  M  L  Q  M  Q   : R  V  *  K  L  L  I  A  K  S  T  G  S  I  W  L  A  S  L  L  I  Q  R  L  *  Y  T  P  P  R  M  V  G  M  :  N  L  Y  D  F  F  H  C  M  T  T  S  T  C  G  I  S  R  V  I  V  T   : G  S  S  L  L  A  Y  A  I  E  R  S  I  L  S  L  A  H  L  I  E  L  F  Y  F  G  I  K  G  L  R  N  A  R :   A  F  F  E  C  K  E  D  Q  L  L  L  M  M  S  K  A  L  Y  L  L  L  L  L  E  D  I  *  G  C  L  M  H  A  I  S  T  R :   D  L  L  K  F  S  L  L  V  E  M  C  L  M  L  T  A  L  S  S  V  T  M  G  D  L  C  F  * </second_frame>
            <third_frame>   S  S  S  Q  L  *  T  S  V  A  A  G  E  I  Q  Y  K  R  I  C  N  L  L  V  I  E  E  H  H  G  R :   W  T  N  *  Q  R  R  Q  G  L  T  *  D  H  *  R  N  S  T  E  H  G  S  R  H  D  I  S  R  L   : *  W  *  N  Q  F  N  G  F  P  *  D  I  K  F  Y  G  D  S  Q  *  *  *  V  H  T  S  I  *  C  C  K  C  N  :  V  F  E  N  Y  *  *  Q  K  V  R  G  R  S  G  *  L  H  F  S  S  N  D  C  N  I  L  L  Q  E  W  L  G  * :   I  S  T  T  S  F  I  A  *  Q  Q  V  L  A  V  F  Q  G  S  S  *  Q  :  G  R  L  S  *  L  M  L  *  K  G  V  F  Y  L  W  L  T  *  S  N  C  S  T  L  G  S  K  G  *  E  M  P   : G  P  S  S  S  A  R  K  T  S  Y  C  L  *  *  A  R  P  C  I  C  Y  C  F  W  R  I  Y  K  D  V  *  C  T  L  F  R  Q   : G  T  F  *  N  F  L  C  W  W  R  C  V  *  C  *  Q  R  *  V  Q  *  R  W  E  T  C  A  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0057H03.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61017" stop="60924"/>
                    <exon start="60835" stop="60744"/>
                    <exon start="59805" stop="59705"/>
                    <exon start="58708" stop="58608"/>
                    <exon start="58514" stop="58448"/>
                    <exon start="58364" stop="58265"/>
                    <exon start="58182" stop="58069"/>
                    <exon start="57963" stop="57877"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARVLSCKLPSPPVKYNTKESATCLLSKNTMAGGPTDREDKVSLETTEEILQSMEVGMTFRDYSGRISSMDFHKTSNFMVTASDDESIRLYDVANATCLKTINSKKYGVDLVSFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHRDRVVSLSLCYRKEYFISGSLDRTVLLWDQRAEKCQGLLRVQGRPATAYDEQGLVFAIAFGGYIRMFDARYFDKGPFEIFSVGGDVSDANSVKFSNDGRLVLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="69628" PGL_stop="68997"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69628" e_stop="69419"/>
            <exon e_start="69264" e_stop="68997"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.552" e_score="0.957"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="69628" e_stop="69419" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.552">
            <gDNA_intron_boundary i_start="69418" i_stop="69265" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69264" e_stop="68997" e_length="268"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69628" stop="69419"/>
              <exon start="69264" stop="68997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601488" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCTCAAGTGGAGTTTTAATTTTAGTCTCTTTTTTATCACAACACTCTGAATTAGTGATAATTGGAAAATGGAAGGGGAAGAAGGCGTAGTAGTGCGGGGGCGGGTAGAGATTGATATGCGTCAGCCTTTTCAGTCTGTGAAGGAAGCAGTTATGTTGTTTGGGGAAAAGGTTTTAGCCGGAGAAATTCATGCTAAGCAACTTCAACAG : ATAAATCATGAGATTTGTACTGATGAACATAACAAGTGAAGGTAACTTAATGGTGCACAAATGACGGTGCCTATAACTTAGACTGATAAGTTATATGTGTATCTCTATATACTATGAAACTTATTATGATGTTCAACGTCAATGGCGGACCTATGTAGTGACTTATGGGTGCTTAAGCACCCAGTGCCTTTTGTGACAACATCATTATTTCTGTACATAATTTAATAATTCACTGAAATATATATCAATTGAGCACCCCATTATATGT</gDNA_template>
            <first_frame> H  L  K  W  S  F  N  F  S  L  F  F  I  T  T  L  *  I  S  D  N  W  K  M  E  G  E  E  G  V  V  V  R  G  R  V  E  I  D  M  R  Q  P  F  Q  S  V  K  E  A  V  M  L  F  G  E  K  V  L  A  G  E  I  H  A  K  Q  L  Q  Q  :  I  N  H  E  I  C  T  D  E  H  N  K  *  R  *  L  N  G  A  Q  M  T  V  P  I  T  *  T  D  K  L  Y  V  Y  L  Y  I  L  *  N  L  L  *  C  S  T  S  M  A  D  L  C  S  D  L  W  V  L  K  H  P  V  P  F  V  T  T  S  L  F  L  Y  I  I  *  *  F  T  E  I  Y  I  N  *  A  P  H  Y  M  </first_frame>
            <second_frame>  T  S  S  G  V  L  I  L  V  S  F  L  S  Q  H  S  E  L  V  I  I  G  K  W  K  G  K  K  A  *  *  C  G  G  G  *  R  L  I  C  V  S  L  F  S  L  *  R  K  Q  L  C  C  L  G  K  R  F  *  P  E  K  F  M  L  S  N  F  N  R :   *  I  M  R  F  V  L  M  N  I  T  S  E  G  N  L  M  V  H  K  *  R  C  L  *  L  R  L  I  S  Y  M  C  I  S  I  Y  Y  E  T  Y  Y  D  V  Q  R  Q  W  R  T  Y  V  V  T  Y  G  C  L  S  T  Q  C  L  L  *  Q  H  H  Y  F  C  T  *  F  N  N  S  L  K  Y  I  S  I  E  H  P  I  I  C </second_frame>
            <third_frame>   P  Q  V  E  F  *  F  *  S  L  F  Y  H  N  T  L  N  *  *  *  L  E  N  G  R  G  R  R  R  S  S  A  G  A  G  R  D  *  Y  A  S  A  F  S  V  C  E  G  S  S  Y  V  V  W  G  K  G  F  S  R  R  N  S  C  *  A  T  S  T   : D  K  S  *  D  L  Y  *  *  T  *  Q  V  K  V  T  *  W  C  T  N  D  G  A  Y  N  L  D  *  *  V  I  C  V  S  L  Y  T  M  K  L  I  M  M  F  N  V  N  G  G  P  M  *  *  L  M  G  A  *  A  P  S  A  F  C  D  N  I  I  I  S  V  H  N  L  I  I  H  *  N  I  Y  Q  L  S  T  P  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0057H03.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69577" stop="69419"/>
                    <exon start="69264" stop="69226"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISDNWKMEGEEGVVVRGRVEIDMRQPFQSVKEAVMLFGEKVLAGEIHAKQLQQINHEICTDEHNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 18 chains have been computed
$ 
$ memory statistics:
$ 27896 bytes spliced alignments in total
$ 13 spliced alignments have been stored
$ 2145 bytes was the average size of a spliced alignment
$ 18024 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1638 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 24 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:42:07
-->
